Citrus Sinensis ID: 033394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSRGVN
Secondary Structure (PSIPRED)
cEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MSYIFVCSYNLRSISSSATSVIKVLLgenpgcelgdsapsksgLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLrvrsrgvn
Flexible Loop (DISEMBL)
MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAEnkkkqikkirradapiwwkwgrkRLLYQIIkghlrvrsrgvn
Low Complexity Region (SEG)
MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSRGVN
Disordered region (IsUnstruct)
**YIFVCSYNLRSISSSATSVIKVLLGENPGCELG*****KSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRV******
Disordered Region (DISOPRED)
MSYIFVCSYNLRSISSSATSVIKVLLGENPGC*****APSKSGLVTVLEVLKIQMNFWPSLASR******************************WWKWGRKRLLYQIIKGH**V******
Disordered Region (DISEMBL)
MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSRGVN
Disordered Region (DISPRO)
MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGH*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSRGVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q8GXJ1	552	Histone deacetylase 15 OS	yes	no	0.966	0.210	0.533	2e-27

>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2

 Score =  121 bits (303), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 79/118 (66%), Gaps = 2/118 (1%)

Query: 1   MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWP 59
           M  I    YNLRSIS+SAT+VIKVLLGENP  EL   + PS +GL TVL+VL IQ+ FWP
Sbjct: 436 MLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWP 495

Query: 60  SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
           SLA  +++L S  E    ENKK Q+K+ +    P WWKWGRK+LLY  +   +  RS+
Sbjct: 496 SLAISYSKLLSELEARLIENKKNQMKR-KVVRVPTWWKWGRKKLLYNFLSARMISRSK 552

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
224121378	503	hypothetical protein POPTRDRAFT_421550 [	0.891	0.212	0.688	1e-34
449442727	600	PREDICTED: histone deacetylase 15-like [	0.916	0.183	0.637	4e-33
297734170	697	unnamed protein product [Vitis vinifera]	0.925	0.159	0.675	7e-32
359490935	621	PREDICTED: histone deacetylase 15-like [	0.925	0.178	0.675	7e-32
449476300	176	PREDICTED: histone deacetylase 15-like [	0.891	0.607	0.618	1e-29
356513908	508	PREDICTED: histone deacetylase 15-like [	0.9	0.212	0.651	4e-29
297830512	552	hypothetical protein ARALYDRAFT_479356 [	0.966	0.210	0.550	1e-27
18401915	552	histone deacetylase 15 [Arabidopsis thal	0.966	0.210	0.533	7e-26
26451468	552	putative histone deacetylase [Arabidopsi	0.966	0.210	0.533	7e-26
21554265	552	histone deacetylase, putative [Arabidops	0.966	0.210	0.533	7e-26

>gi|224121378|ref|XP_002318567.1| hypothetical protein POPTRDRAFT_421550 [Populus trichocarpa] gi|222859240|gb|EEE96787.1| hypothetical protein POPTRDRAFT_421550 [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 86/109 (78%), Gaps = 2/109 (1%)

Query: 8   SYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTE 67
            YNLRSISSSATSVIKVLLGE PG ELG+ APS++GL TVLEV+KIQMNFWPSL S + +
Sbjct: 397 GYNLRSISSSATSVIKVLLGEGPGSELGNIAPSRAGLQTVLEVMKIQMNFWPSLGSSYAK 456

Query: 68  LQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRS 116
           LQS W  Y   N +KQIKK +R + PIWWKWGRKRLLY I+   L V+S
Sbjct: 457 LQSQWGAYC--NTRKQIKKRQRTEPPIWWKWGRKRLLYHILVRRLHVKS 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442727|ref|XP_004139132.1| PREDICTED: histone deacetylase 15-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 3/113 (2%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTEL 68
           YNLRSISSSAT+VIKVLLGE+P C+L D  PS +G+ TVL+VL IQ NFWP L S F++L
Sbjct: 487 YNLRSISSSATAVIKVLLGESPECDLDDHLPSSAGMKTVLDVLAIQKNFWPVLESSFSKL 546

Query: 69  QSLWEIYAAE--NKKKQIKKIRRA-DAPIWWKWGRKRLLYQIIKGHLRVRSRG 118
           QS+ EI+A E   K K  K+ RRA  API W+WGRKRLLY ++KG +RVRS+G
Sbjct: 547 QSMLEIFATERRGKVKPCKQRRRAVVAPICWRWGRKRLLYHLLKGQIRVRSKG 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734170|emb|CBI15417.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 86/111 (77%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTEL 68
           YNLRSISSSAT+VIKVLLGE PGCEL +  PSKSGL TVLEVLKIQMNFW +LAS  T+L
Sbjct: 587 YNLRSISSSATAVIKVLLGETPGCELDNCLPSKSGLRTVLEVLKIQMNFWSTLASTLTKL 646

Query: 69  QSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSRGV 119
           +S W     EN+KK  KK RRA AP  WKWGRK LLY ++ GHLR +S+ +
Sbjct: 647 ESEWGSCLVENRKKHTKKRRRAVAPKPWKWGRKTLLYHLLSGHLRYKSKRI 697

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490935|ref|XP_002274270.2| PREDICTED: histone deacetylase 15-like [Vitis vinifera]

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 75/111 (67%), Positives = 86/111 (77%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTEL 68
           YNLRSISSSAT+VIKVLLGE PGCEL +  PSKSGL TVLEVLKIQMNFW +LAS  T+L
Sbjct: 511 YNLRSISSSATAVIKVLLGETPGCELDNCLPSKSGLRTVLEVLKIQMNFWSTLASTLTKL 570

Query: 69  QSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSRGV 119
           +S W     EN+KK  KK RRA AP  WKWGRK LLY ++ GHLR +S+ +
Sbjct: 571 ESEWGSCLVENRKKHTKKRRRAVAPKPWKWGRKTLLYHLLSGHLRYKSKRI 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476300|ref|XP_004154699.1| PREDICTED: histone deacetylase 15-like [Cucumis sativus]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 84/110 (76%), Gaps = 3/110 (2%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTEL 68
           YNLRSISSSAT+VIKVLLGE+P C+L D  PS +G+ TVL+VL IQ NFWP L S F++L
Sbjct: 65  YNLRSISSSATAVIKVLLGESPECDLDDHLPSSAGMKTVLDVLAIQKNFWPVLESSFSKL 124

Query: 69  QSLWEIYAAE--NKKKQIKKIRRA-DAPIWWKWGRKRLLYQIIKGHLRVR 115
           QS+ EI+A E   K K  K+ RRA  API W+WGRKRLLY ++KG +R +
Sbjct: 125 QSMLEIFATERRGKVKPCKQRRRAVVAPICWRWGRKRLLYHLLKGQIRCQ 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513908|ref|XP_003525650.1| PREDICTED: histone deacetylase 15-like [Glycine max]

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/109 (65%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTEL 68
           YNLRSISSSAT+VIKVLLGE+PGCEL +S PSK+GL TVLEVLKIQMNFWP+L   F  L
Sbjct: 399 YNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLQTVLEVLKIQMNFWPALGPIFVNL 458

Query: 69  QSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
           +S W +Y  E K+KQIKK RR   P+ W+WGRK LL+  + GH  V+S+
Sbjct: 459 ESQWRMYCFERKRKQIKKRRRVLVPM-WRWGRKSLLFHFLNGHHNVKSK 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830512|ref|XP_002883138.1| hypothetical protein ARALYDRAFT_479356 [Arabidopsis lyrata subsp. lyrata] gi|297328978|gb|EFH59397.1| hypothetical protein ARALYDRAFT_479356 [Arabidopsis lyrata subsp. lyrata]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/118 (55%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 1   MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSA-PSKSGLVTVLEVLKIQMNFWP 59
           M  I    YNLRSISSSAT+VIKVLLGE P   L  +A PS+ GL TVL+V+ IQM FWP
Sbjct: 436 MLVILEGGYNLRSISSSATAVIKVLLGEIPENNLPIAATPSREGLQTVLDVMNIQMKFWP 495

Query: 60  SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
           SLA  +++L S WE    ENKK Q+K+ +    P WWKWGRK+LLY+ + G +  RS+
Sbjct: 496 SLAISYSKLLSEWEARLIENKKNQMKR-KLVRVPTWWKWGRKKLLYKFLSGRMISRSK 552

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401915|ref|NP_566612.1| histone deacetylase 15 [Arabidopsis thaliana] gi|357528804|sp|Q8GXJ1.2|HDA15_ARATH RecName: Full=Histone deacetylase 15 gi|332642589|gb|AEE76110.1| histone deacetylase 15 [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 79/118 (66%), Gaps = 2/118 (1%)

Query: 1   MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWP 59
           M  I    YNLRSIS+SAT+VIKVLLGENP  EL   + PS +GL TVL+VL IQ+ FWP
Sbjct: 436 MLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWP 495

Query: 60  SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
           SLA  +++L S  E    ENKK Q+K+ +    P WWKWGRK+LLY  +   +  RS+
Sbjct: 496 SLAISYSKLLSELEARLIENKKNQMKR-KVVRVPTWWKWGRKKLLYNFLSARMISRSK 552

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451468|dbj|BAC42833.1| putative histone deacetylase [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 79/118 (66%), Gaps = 2/118 (1%)

Query: 1   MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWP 59
           M  I    YNLRSIS+SAT+VIKVLLGENP  EL   + PS +GL TVL+VL IQ+ FWP
Sbjct: 436 MLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWP 495

Query: 60  SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
           SLA  +++L S  E    ENKK Q+K+ +    P WWKWGRK+LLY  +   +  RS+
Sbjct: 496 SLAISYSKLLSELEARLIENKKNQMKR-KVVRVPTWWKWGRKKLLYNFLSARMISRSK 552

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554265|gb|AAM63340.1| histone deacetylase, putative [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 79/118 (66%), Gaps = 2/118 (1%)

Query: 1   MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWP 59
           M  I    YNLRSIS+SAT+VIKVLLGENP  EL   + PS +GL TVL+VL IQ+ FWP
Sbjct: 436 MLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWP 495

Query: 60  SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKGHLRVRSR 117
           SLA  +++L S  E    ENKK Q+K+ +    P WWKWGRK+LLY  +   +  RS+
Sbjct: 496 SLAISYSKLLSELEARLIENKKNQMKR-KVVRVPTWWKWGRKKLLYNFLSARMISRSK 552

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2095087	564	HDA15 "AT3G18520" [Arabidopsis	0.916	0.195	0.459	2.5e-15
ASPGD|ASPL0000014944	766	hdaA [Emericella nidulans (tax	0.566	0.088	0.347	1.8e-05
CGD|CAL0003359	833	HDA1 [Candida albicans (taxid:	0.75	0.108	0.354	0.00031
UNIPROTKB|Q5A960	833	HDA1 "Likely class II histone	0.75	0.108	0.354	0.00031

TAIR|locus:2095087 HDA15 "AT3G18520" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 51/111 (45%), Positives = 65/111 (58%)

Query:     1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWP 59
             M  I    YNLRSIS+SAT+VIKVLLGENP  EL   + PS +GL TVL+VL IQ+ FWP
Sbjct:   436 MLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWP 495

Query:    60 SLASRFTELQSLWEIYAAENKKKQIKKIRRADAPIWWKWGRKRLLYQIIKG 110
             SLA  +++L S  E    ENK ++  +          + G K    Q+  G
Sbjct:   496 SLAISYSKLLSELEARLIENKSEKSDEKEGCSGSDMVEMGTKEAFVQLSLG 546

GO:0004407 "histone deacetylase activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISS

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=RCA

ASPGD|ASPL0000014944 hdaA [Emericella nidulans (taxid:162425)]

 Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query:     4 IFVC---SYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPS 60
             + VC    YN RSIS SA +V K L+G NP   L  + PS++ + T+  V  IQ ++W  
Sbjct:   432 VAVCLEGGYNFRSISKSALAVTKTLMG-NPPDRLSFTCPSEAAISTIRRVSSIQSDYWKC 490

Query:    61 LASRFTELQSLW 72
             +  +  + + +W
Sbjct:   491 MYPKAIKNEGVW 502

GO:0004407 "histone deacetylase activity" evidence=IMP;IDA

GO:0016575 "histone deacetylation" evidence=IMP;IDA

GO:0006348 "chromatin silencing at telomere" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:1900376 "regulation of secondary metabolite biosynthetic process" evidence=IMP

GO:1900197 "negative regulation of penicillin biosynthetic process" evidence=IMP

GO:0042316 "penicillin metabolic process" evidence=IMP

GO:0045460 "sterigmatocystin metabolic process" evidence=IMP

GO:0010913 "regulation of sterigmatocystin biosynthetic process" evidence=IMP

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0031934 "mating-type region heterochromatin" evidence=IEA

GO:0031933 "telomeric heterochromatin" evidence=IEA

GO:0030874 "nucleolar chromatin" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IEA

GO:0071585 "detoxification of cadmium ion" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IEA

CGD|CAL0003359 HDA1 [Candida albicans (taxid:5476)]

 Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:     1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPS 60
             ++ I    YNL SIS SA +V KVL+GE P   +    P    +  V EV+KIQ  ++ S
Sbjct:   431 LAVILEGGYNLDSISKSALAVAKVLVGEPPENTI-TLRPQAEAIEVVDEVIKIQSKYFKS 489

Query:    61 LASRFTELQSLWE-IY-AAENKKKQIKKIRRADAPI 94
             L +       ++E +Y  A+ +K   K +  AD PI
Sbjct:   490 LRNGIPN--GIFEDVYDLADVEKSNYKLVNIAD-PI 522

GO:0004407 "histone deacetylase activity" evidence=IEA;ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0031934 "mating-type region heterochromatin" evidence=IEA

GO:0031933 "telomeric heterochromatin" evidence=IEA

GO:0030874 "nucleolar chromatin" evidence=IEA

GO:0070823 "HDA1 complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:1900436 "positive regulation of filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036177 "filamentous growth of a population of unicellular organisms in response to pH" evidence=IMP

GO:1900743 "positive regulation of filamentous growth of a population of unicellular organisms in response to pH" evidence=IMP

GO:0071469 "cellular response to alkalinity" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:1900445 "positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IEA

GO:0034401 "regulation of transcription by chromatin organization" evidence=IEA

GO:0031047 "gene silencing by RNA" evidence=IEA

GO:0010978 "gene silencing involved in chronological cell aging" evidence=IEA

GO:0006348 "chromatin silencing at telomere" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0010621 "negative regulation of transcription by transcription factor localization" evidence=IEA

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0001308 "negative regulation of chromatin silencing involved in replicative cell aging" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:1900239 "regulation of phenotypic switching" evidence=IMP

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|Q5A960 HDA1 "Likely class II histone deacetylase subunit Hda1p" [Candida albicans SC5314 (taxid:237561)]

 Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 34/96 (35%), Positives = 50/96 (52%)

Query:     1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPS 60
             ++ I    YNL SIS SA +V KVL+GE P   +    P    +  V EV+KIQ  ++ S
Sbjct:   431 LAVILEGGYNLDSISKSALAVAKVLVGEPPENTI-TLRPQAEAIEVVDEVIKIQSKYFKS 489

Query:    61 LASRFTELQSLWE-IY-AAENKKKQIKKIRRADAPI 94
             L +       ++E +Y  A+ +K   K +  AD PI
Sbjct:   490 LRNGIPN--GIFEDVYDLADVEKSNYKLVNIAD-PI 522


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120       120   0.00091  102 3  11 22  0.48    30
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.28u 0.16s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.28u 0.16s 13.44t   Elapsed:  00:00:01
  Start:  Sat May 11 01:48:21 2013   End:  Sat May 11 01:48:22 2013

GO:0004407 "histone deacetylase activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0016575 "histone deacetylation" evidence=ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036177 "filamentous growth of a population of unicellular organisms in response to pH" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0071469 "cellular response to alkalinity" evidence=IMP

GO:1900239 "regulation of phenotypic switching" evidence=IMP

GO:1900436 "positive regulation of filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:1900445 "positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:1900743 "positive regulation of filamentous growth of a population of unicellular organisms in response to pH" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
cd10003	350	cd10003, HDAC6-dom2, Histone deacetylase 6, domain	9e-08
cd11600	313	cd11600, HDAC_Clr3, Class II Histone deacetylase C	4e-06

>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLA 62
           YNL SIS S +   K LLG+ P        P  S L ++  VL++   +W SL 
Sbjct: 297 YNLTSISESMSMCTKTLLGDPPPVLDLPRPPCSSALKSINNVLQVHQKYWKSLR 350

Histone deacetylase 6 is a class IIb Zn-dependent enzyme that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC6 is the only histone deacetylase with internal duplication of two catalytic domains which appear to function independently of each other, and also has a C-terminal ubiquitin-binding domain. It is located in the cytoplasm and associates with microtubule motor complex, functioning as the tubulin deacetylase and regulating microtubule-dependent cell motility. Known interaction partners of HDAC6 are alpha tubulin and ubiquitin-like modifier FAT10 (also known as Ubiquitin D or UBD). Length = 350

>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 9   YNLRSISSSATSVIKVLLGENPG 31
           YNL +IS SA +V KVLLGE P 
Sbjct: 288 YNLDAISDSALAVAKVLLGEAPP 310

Clr3 is a class II Histone deacetylase Zn-dependent enzyme that catalyzes hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Clr3 is the homolog of the class-II HDAC HdaI in S. cerevisiae, and is essential for silencing in heterochromatin regions, such as centromeric regions, ribosomal DNA, the mating-type region and telomeric loci. Clr3 has also been implicated in the regulation of stress-related genes; the histone acetyltransferase, Gcn5, in S. cerevisiae, preferentially acetylates global histone H3K14 while Clr3 preferentially deacetylates H3K14ac, and therefore, interplay between Gcn5 and Clr3 is crucial for the regulation of many stress-response genes. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG1343	797	consensus Histone deacetylase complex, catalytic c	98.98
KOG1343	797	consensus Histone deacetylase complex, catalytic c	98.27
PTZ00346	429	histone deacetylase; Provisional	97.06
COG0123	340	AcuC Deacetylases, including yeast histone deacety	96.62
PTZ00063	436	histone deacetylase; Provisional	95.93
PF09757	178	Arb2: Arb2 domain; InterPro: IPR019154 The fission	93.53

>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]

Probab=98.98  E-value=7.4e-10  Score=99.64  Aligned_cols=63  Identities=24%  Similarity=0.462  Sum_probs=55.6

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCccccc
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLAS   63 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~---~~~ps~~~~~tI~~Vi~~q~~yW~~L~~   63 (120)
                      ++++||||||+.++++|+.+|+++|+|++.++++.   +..|+..+..++++++.+|++||+|++.
T Consensus       731 vv~~LEggy~lt~is~s~~~~~~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~~  796 (797)
T KOG1343|consen  731 VVLALEGGYDLTAISDSAEACVRALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQG  796 (797)
T ss_pred             EEEEecCCcchhhhhHHHHHHHHhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhcccccccC
Confidence            47899999999999999999999999998776543   2467788999999999999999999963

>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]

Probab=98.27  E-value=8.8e-07  Score=80.10  Aligned_cols=63  Identities=19%  Similarity=0.288  Sum_probs=56.1

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcccccc
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASR   64 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~~~ps~~~~~tI~~Vi~~q~~yW~~L~~~   64 (120)
                      ++++||||||+++++++ ..++..|+|++++.+..+..|.+++.+++..+.++|..||+|+...
T Consensus       329 l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~~  391 (797)
T KOG1343|consen  329 LVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGGS  391 (797)
T ss_pred             cceecchhHHHHHHHHh-hhhHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhcccccccCC
Confidence            46789999999999999 8999999999987776656688999999999999999999999644

>PTZ00346 histone deacetylase; Provisional

Probab=97.06  E-value=0.00058  Score=58.35  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=28.1

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      ++++||||||+.++++|.+.++.+|+|.+.+
T Consensus       310 lv~vleGGY~~~~lar~w~~~t~~l~g~~i~  340 (429)
T PTZ00346        310 MLALGGGGYTIRNVAKLWAYETSILTGHPLP  340 (429)
T ss_pred             EEEEeCCcCCccHHHHHHHHHHHHHcCCCCC
Confidence            5789999999999999999999999998643

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.62  E-value=0.0024  Score=52.91  Aligned_cols=31  Identities=19%  Similarity=0.265  Sum_probs=27.9

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      ++++|||||++++++.++.+.+..|.|.+..
T Consensus       285 ~~~vleGGY~~~~l~~~~~~~~~~l~~~~~~  315 (340)
T COG0123         285 VVAVLEGGYNLDALARSLVAFLAGLAGLVEE  315 (340)
T ss_pred             eEEEecCCCChHHHHHHHHHHHHHHcCCCcc
Confidence            4789999999999999999999999997543

>PTZ00063 histone deacetylase; Provisional

Probab=95.93  E-value=0.0072  Score=51.83  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGE   28 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~   28 (120)
                      +++++|||||+.++++|.+..+.+++|.
T Consensus       292 il~l~gGGY~~~~lar~w~~~t~~~~~~  319 (436)
T PTZ00063        292 LLVLGGGGYTIRNVARCWAYETGVILNK  319 (436)
T ss_pred             EEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999995

>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []

Probab=93.53  E-value=0.066  Score=40.08  Aligned_cols=26  Identities=35%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             CCChhHHHHHHHHHHHHhccCccccc
Q 033394           38 APSKSGLVTVLEVLKIQMNFWPSLAS   63 (120)
Q Consensus        38 ~ps~~~~~tI~~Vi~~q~~yW~~L~~   63 (120)
                      .+++.|.+++++|+.+|++||+||.+
T Consensus         9 ~~~~~a~~~v~~v~~~qs~yw~~l~~   34 (178)
T PF09757_consen    9 VASPSAFETVKNVRRIQSKYWKCLNP   34 (178)
T ss_dssp             ---HHHHHHHHHHHHHHTTT-GGGTS
T ss_pred             CCCHHHeeeHHHHHHHHHHHHHHhcC
Confidence            56889999999999999999999966

This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
2pqp_A	421	HD7A, histone deacetylase 7A; HDAC, structural gen	2e-10
1zz1_A	369	Histone deacetylase-like amidohydrolase; HET: SHH;	5e-05

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASRFTEL 68
           Y+   +     +VI+ L G     +      +  G  T+L+    +      +     ++
Sbjct: 312 YSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDA---ERAAIEEIVPLLADI 368

Query: 69  Q 69
           +
Sbjct: 369 R 369

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2pqp_A	421	HD7A, histone deacetylase 7A; HDAC, structural gen	99.5
2vqm_A	413	HD4, histone deacetylase 4; inhibitor, repressor,	99.36
1zz1_A	369	Histone deacetylase-like amidohydrolase; HET: SHH;	98.09
1c3p_A	375	Protein (HDLP (histone deacetylase-like protein) )	97.83
4a69_A	376	Histone deacetylase 3,; transcription, hydrolase;	97.04
3ew8_A	388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	96.99
3max_A	367	HD2, histone deacetylase 2; class 2, HDAC, foot po	96.68

>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*

Probab=99.36  E-value=6.8e-13  Score=110.24  Aligned_cols=64  Identities=16%  Similarity=0.341  Sum_probs=56.7

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCC---CCCChhHHHHHHHHHHHHhccCcccccc
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGD---SAPSKSGLVTVLEVLKIQMNFWPSLASR   64 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~---~~ps~~~~~tI~~Vi~~q~~yW~~L~~~   64 (120)
                      ++++||||||++++++|+.+++++|+|++.++++..   ..|+..+.++|++|+++|++||+||+..
T Consensus       324 ~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~~~~v~~~~~~~W~~l~~~  390 (413)
T 2vqm_A          324 IVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRT  390 (413)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHTTCGGGTSC
T ss_pred             EEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHHHHHHHHHHHHHhhhhhcc
Confidence            478999999999999999999999999987665532   3688999999999999999999999764

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*

Probab=98.09  E-value=2.3e-06  Score=70.08  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=43.1

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCC----CCCChhHHHHHHHHHHHHhccC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGD----SAPSKSGLVTVLEVLKIQMNFW   58 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~----~~ps~~~~~tI~~Vi~~q~~yW   58 (120)
                      ++++||||||++++++|+.+++++|+|.++.+.+..    ..|+.+..+.+.++++..+.+|
T Consensus       304 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~  365 (369)
T 1zz1_A          304 IVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLL  365 (369)
T ss_dssp             EEEEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGG
T ss_pred             EEEEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhccccchHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999876111110    1334455667777777777777

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*

Probab=97.83  E-value=3.2e-05  Score=63.47  Aligned_cols=53  Identities=11%  Similarity=0.034  Sum_probs=39.1

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhccCcccccc
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASR   64 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~~~~ps~~~~~tI~~Vi~~q~~yW~~L~~~   64 (120)
                      ++++||||||+.++++|+++++++|+|.+.++.    -| ....    +  ..+..+|++..+.
T Consensus       289 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~----lp-~~~~----~--~~~~~~~~~~~~~  341 (375)
T 1c3p_A          289 GVYLGGGGYHPYALARAWTLIWCELSGREVPEK----LN-NKAK----E--LLKSIDFEEFDDE  341 (375)
T ss_dssp             CEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS----CC-HHHH----H--HHHHSCCCCSSTT
T ss_pred             eEEEECCCCChHHHHHHHHHHHHHHcCCCCCcc----CC-HHHH----H--HHHhcCcccccCC
Confidence            589999999999999999999999999874322    12 1111    2  2366899988644

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}

Probab=97.04  E-value=0.00044  Score=56.81  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=28.0

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      +++++|||||++++++|.+.+..+|+|.+.+
T Consensus       290 ~v~v~eGGY~~~~var~w~~~~a~l~g~~~~  320 (376)
T 4a69_A          290 LLVLGGGGYTVRNVARCWTYETSLLVEEAIS  320 (376)
T ss_dssp             EEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred             EEEEECCCCChhHHHHHHHHHHHHhcCCCcc
Confidence            4789999999999999999999999998643

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*

Probab=96.99  E-value=0.0005  Score=56.82  Aligned_cols=31  Identities=23%  Similarity=0.209  Sum_probs=27.8

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      +++++|||||+.++++|.+.+..+|+|.+.+
T Consensus       298 ~l~~~gGGY~~~~var~w~~~~~~l~g~~l~  328 (388)
T 3ew8_A          298 TLILGGGGYNLANTARCWTYLTGVILGKTLS  328 (388)
T ss_dssp             EEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEEEECCCCChhHHHHHHHHHHHHHcCCCCC
Confidence            3678999999999999999999999998743

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}

Probab=96.68  E-value=0.0013  Score=53.90  Aligned_cols=31  Identities=16%  Similarity=0.089  Sum_probs=28.0

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      +++++|||||+.++++|.+.+..+++|.+.+
T Consensus       289 ~v~~~eGGY~~~~var~wt~~ta~~~~~~i~  319 (367)
T 3max_A          289 LLMLGGGGYTIRNVARCWTYETAVALDCEIP  319 (367)
T ss_dssp             EEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred             EEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence            4789999999999999999999999998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d3c10a1	386	c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7	1e-07

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 8/56 (14%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 9   YNLRSISSSATSVIKVLLGENPGCELGDS---APSKSGLVTVLEVLKIQMNFWPSL 61
           ++L +I  ++ + +  LLG        +     P+ + + ++  V+++   +W  +
Sbjct: 329 HDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCM 384

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d3c10a1	386	Histone deacetylase 7, HDAC7 {Human (Homo sapiens)	99.35
d1c3pa_	372	HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	97.77
d1t64a_	364	Histone deacetylase 8, HDAC8 {Human (Homo sapiens)	97.22

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.3e-13  Score=108.04  Aligned_cols=63  Identities=13%  Similarity=0.326  Sum_probs=54.8

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhccCccccc
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPGCELG---DSAPSKSGLVTVLEVLKIQMNFWPSLAS   63 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~~l~~---~~~ps~~~~~tI~~Vi~~q~~yW~~L~~   63 (120)
                      ++++||||||++++++|+.+++++|+|++.++...   ...|+..+.++|++++++|++||+||++
T Consensus       321 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~  386 (386)
T d3c10a1         321 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR  386 (386)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred             EEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHhhHhhcC
Confidence            47899999999999999999999999987655433   2368888999999999999999999963

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.77  E-value=9.2e-06  Score=64.46  Aligned_cols=31  Identities=16%  Similarity=0.073  Sum_probs=28.5

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      ++++||||||++++++|+++++.+|+|.+.+
T Consensus       288 ~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~  318 (372)
T d1c3pa_         288 GVYLGGGGYHPYALARAWTLIWCELSGREVP  318 (372)
T ss_dssp             CEEECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred             eEEEEcCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            5789999999999999999999999998743

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00011  Score=58.14  Aligned_cols=31  Identities=23%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             CeeeecCCCChhhHHHHHHHHHHHHcCCCCC
Q 033394            1 MSYIFVCSYNLRSISSSATSVIKVLLGENPG   31 (120)
Q Consensus         1 LvvvLEGGYNL~sla~sa~avlr~LlG~~p~   31 (120)
                      +++++|||||+++++.|.+.++.+|+|.+.+
T Consensus       285 ~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~  315 (364)
T d1t64a_         285 TLILGGGGYNLANTARCWTYLTGVILGKTLS  315 (364)
T ss_dssp             EEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence            3688999999999999999999999998643