Citrus Sinensis ID: 033422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mhdfcftipyglilIGGGIVgfakkgstaslaggVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKiatggnqiptkae
Flexible Loop (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIatggnqiptkae
Low Complexity Region (SEG)
MHDFCFTIPYgliligggivgFAKKgstaslaggvgtglllvsagYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE
Disordered region (IsUnstruct)
**DFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATG*********
Disordered Region (DISOPRED)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYK*************
Disordered Region (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE
Disordered Region (DISPRO)
*HDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQI*****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
O64847	108	UPF0136 membrane protein	no	no	0.789	0.870	0.39	2e-08
Q0P436	107	Transmembrane protein 14C	yes	no	0.823	0.915	0.339	2e-06
Q5R751	112	Transmembrane protein 14C	yes	no	0.756	0.803	0.343	6e-06
Q9CQN6	114	Transmembrane protein 14C	yes	no	0.756	0.789	0.343	2e-05
Q9P0S9	112	Transmembrane protein 14C	yes	no	0.764	0.812	0.33	2e-05
Q924P2	115	Transmembrane protein 14C	no	no	0.756	0.782	0.333	4e-05
P56983	99	Transmembrane protein 14A	no	no	0.613	0.737	0.312	4e-05
P56982	99	Transmembrane protein 14A	yes	no	0.613	0.737	0.337	8e-05
Q9NUH8	114	Transmembrane protein 14B	no	no	0.764	0.798	0.343	9e-05
Q9Y6G1	99	Transmembrane protein 14A	no	no	0.672	0.808	0.321	0.0001

>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 6   FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIE 65
           FT+ Y  +L  GG++G+ K+GS  SL  G G      SA        E   N   A  I 
Sbjct: 9   FTLAYASLLGVGGLMGYLKRGSKISLVAGGG------SAALFYYVYTELPGNPVLASSIG 62

Query: 66  TVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLY 105
            V +A LT +M  RY+ T K++PAG+V+ +S +MTG YL+
Sbjct: 63  IVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLH 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q0P436|TM14C_DANRE Transmembrane protein 14C OS=Danio rerio GN=tmem14c PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 10  YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCA 69
           Y  ++  GG++G+ K GS  SLA G+  G L   AG+ + +  +   N    I +    +
Sbjct: 10  YAALVASGGVIGYVKAGSVPSLAAGLVFGGL---AGFGAYQTSQDPGN----IWVSLAAS 62

Query: 70  ALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKA 118
             L A+M +R+  + KI PAG++AG S LM    L K+  G  Q P K+
Sbjct: 63  GTLAAIMGKRFYNSRKITPAGLIAGASVLM----LAKLGAGMLQKPQKS 107

Required for normal heme biosynthesis.

Danio rerio (taxid: 7955)

>sp|Q5R751|TM14C_PONAB Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
          +H F F   Y  ++  GGI+G+AK GS  SLA G+  G L       SL A++  ++   
Sbjct: 10 LHWFGFG--YAALVASGGIIGYAKAGSVPSLAAGLLFGSL------ASLGAYQLSQDPR- 60

Query: 61 AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALM 99
           + +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 61 NVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 99

Required for normal heme biosynthesis.

Pongo abelii (taxid: 9601)

>sp|Q9CQN6|TM14C_MOUSE Transmembrane protein 14C OS=Mus musculus GN=Tmem14c PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           +H F F   Y  ++  GGI+G+AK GS  SLA G+  G L   AG  + +  +  +N   
Sbjct: 11  LHYFGFG--YAALVATGGIIGYAKAGSVPSLAAGLFFGGL---AGLGAYQLSQDPRN--- 62

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALM 99
            + +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 63  -VWVFLATSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100

Required for normal heme biosynthesis.

Mus musculus (taxid: 10090)

>sp|Q9P0S9|TM14C_HUMAN Transmembrane protein 14C OS=Homo sapiens GN=TMEM14C PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           +H F F   Y  ++  GGI+G+ K GS  SLA G+  G L   AG  + +  +  +N + 
Sbjct: 10  LHWFGFG--YAALVASGGIIGYVKAGSVPSLAAGLLFGSL---AGLGAYQLSQDPRNVW- 63

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMT 100
              +    +  L  +M  R+  + K MPAG++AG S LM 
Sbjct: 64  ---VFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMV 100

Required for normal heme biosynthesis.

Homo sapiens (taxid: 9606)

>sp|Q924P2|TM14C_RAT Transmembrane protein 14C OS=Rattus norvegicus GN=Tmem14c PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           +H + F   Y  ++  GGI+G+AK GS  SLA G+  G L   AG  + +  +  +N + 
Sbjct: 11  LHYYGFG--YAALVATGGIIGYAKAGSVPSLAAGLFFGGL---AGLGAYQLSQDPRNVW- 64

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALM 99
              +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 65  ---VFLATSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100

Required for normal heme biosynthesis.

Rattus norvegicus (taxid: 10116)

>sp|P56983|TM14A_MOUSE Transmembrane protein 14A OS=Mus musculus GN=Tmem14a PE=2 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 17 GGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVM 76
          G ++G+ ++G   SL  G+  GLL   AGY + +    +++    + +    A  L  +M
Sbjct: 15 GSVLGYKRRGGVPSLIAGLSVGLL---AGYGAYRVSNDRRD----VKVSLFTAFFLATIM 67

Query: 77 AQRYMETSKIMPAGIVAGIS 96
            R+  + K+MPAG+VAG+S
Sbjct: 68 GVRFKRSKKVMPAGLVAGLS 87

Mus musculus (taxid: 10090)

>sp|P56982|TM14A_BOVIN Transmembrane protein 14A OS=Bos taurus GN=TMEM14A PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 17 GGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVM 76
          G I+G+ ++G   SL  G+  G L   AGY + +    K++    + +    A  L  +M
Sbjct: 15 GSILGYKRRGGVLSLIAGLFVGFL---AGYGAYRVSNDKRD----VKLSLFTAFFLATIM 67

Query: 77 AQRYMETSKIMPAGIVAGIS 96
            R+  + KIMPAG+VAG+S
Sbjct: 68 GVRFKRSKKIMPAGLVAGLS 87

Bos taurus (taxid: 9913)

>sp|Q9NUH8|TM14B_HUMAN Transmembrane protein 14B OS=Homo sapiens GN=TMEM14B PE=2 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           +H F F   Y  +++ GGIVG+ K GS  SLA G+  G L   AG  + + ++  +N + 
Sbjct: 11  LHWFGFG--YTALVVSGGIVGYVKTGSVPSLAAGLLFGSL---AGLGAYQLYQDPRNVWG 65

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALM 99
            +   +V       VM  R     K MP G++AG S LM
Sbjct: 66  FLAATSVT---FVGVMGMRSYYYGKFMPVGLIAGASLLM 101

Homo sapiens (taxid: 9606)

>sp|Q9Y6G1|TM14A_HUMAN Transmembrane protein 14A OS=Homo sapiens GN=TMEM14A PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 10 YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCA 69
          Y  ++  G I G+ ++G   SL  G+  G L   AGY + +    K++    + +    A
Sbjct: 8  YAALVTFGSIFGYKRRGGVPSLIAGLFVGCL---AGYGAYRVSNDKRD----VKVSLFTA 60

Query: 70 ALLTAVMAQRYMETSKIMPAGIVAGIS 96
            L  +M  R+  + KIMPAG+VAG+S
Sbjct: 61 FFLATIMGVRFKRSKKIMPAGLVAGLS 87

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
225461013	119	PREDICTED: UPF0136 membrane protein At2g	1.0	1.0	0.823	2e-50
224126437	119	predicted protein [Populus trichocarpa]	1.0	1.0	0.773	8e-47
351723771	119	uncharacterized protein LOC100306195 [Gl	1.0	1.0	0.756	7e-46
357494405	121	hypothetical protein MTR_5g092160 [Medic	1.0	0.983	0.731	3e-45
449468492	119	PREDICTED: UPF0136 membrane protein At2g	1.0	1.0	0.747	5e-45
388503384	119	unknown [Lotus japonicus]	1.0	1.0	0.714	2e-43
15232290	119	Transmembrane proteins 14C [Arabidopsis	1.0	1.0	0.739	3e-43
297830734	119	hypothetical protein ARALYDRAFT_479576 [	1.0	1.0	0.731	7e-43
18403201	119	Transmembrane proteins 14C [Arabidopsis	1.0	1.0	0.722	8e-42
297847424	119	hypothetical protein ARALYDRAFT_892015 [	1.0	1.0	0.705	5e-41

>gi|225461013|ref|XP_002280849.1| PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera] gi|297737418|emb|CBI26619.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 109/119 (91%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGGIVG+AKKGS ASL GG+GTG +L+ AGYLSLKAF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGIVGYAKKGSLASLGGGLGTGFVLILAGYLSLKAFKKKKNSYL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+++ETVCAA LT VM QRYM+TSKIMPAGIVAGISALMT FYLYKIATGGN IPTKAE
Sbjct: 61  ALILETVCAAALTWVMGQRYMQTSKIMPAGIVAGISALMTTFYLYKIATGGNHIPTKAE 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126437|ref|XP_002319838.1| predicted protein [Populus trichocarpa] gi|118488838|gb|ABK96229.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858214|gb|EEE95761.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 104/119 (87%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+ GG++G+ KKGS ASL GG GTGL+L+ AGYLSLKAFEK+KNS+ 
Sbjct: 1   MHDFCFTIPYGLVLVIGGVIGYLKKGSMASLGGGAGTGLVLIFAGYLSLKAFEKRKNSFL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
            + IETVCAA+LT VM QRYM+TSKIMPAGIVAGISALMT FYLYKIA GGN IP KAE
Sbjct: 61  GLAIETVCAAILTFVMGQRYMQTSKIMPAGIVAGISALMTLFYLYKIAAGGNHIPAKAE 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723771|ref|NP_001235243.1| uncharacterized protein LOC100306195 [Glycine max] gi|255627833|gb|ACU14261.1| unknown [Glycine max]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 104/119 (87%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+  +  KGS ASLAGGVG+GLLL+ AGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLMLVGGGLFAYISKGSIASLAGGVGSGLLLIVAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+ +ETVCAA+LT VM QRY+ TSKIMPAG+VAGISALMT FYLYK+ATGGN +PTKAE
Sbjct: 61  ALFLETVCAAILTWVMGQRYLGTSKIMPAGLVAGISALMTLFYLYKLATGGNHLPTKAE 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494405|ref|XP_003617491.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|217071360|gb|ACJ84040.1| unknown [Medicago truncatula] gi|355518826|gb|AET00450.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|388495030|gb|AFK35581.1| unknown [Medicago truncatula]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 103/119 (86%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+ GF  KGSTASLAGGVGTGLLL+ AGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGLFGFIHKGSTASLAGGVGTGLLLILAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+ IE +CA +LT +M QRY++TSKIMPAG++AG+SALMT FYLYK+ATGGN IP  A+
Sbjct: 61  ALAIEILCAGVLTWIMGQRYLQTSKIMPAGMIAGLSALMTLFYLYKLATGGNHIPATAK 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468492|ref|XP_004151955.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus] gi|449489972|ref|XP_004158473.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 103/119 (86%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGLIL+GGGI G+ +KGS  SLAGGVGTGL L+ AGYLSL AF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLILVGGGIFGYLRKGSIVSLAGGVGTGLALILAGYLSLGAFKKKKNSYL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+++ETVC+  LT VM QRY++TSKIMPAG+VAGIS+LMT FYLYK+ATGGN I  KAE
Sbjct: 61  ALILETVCSGALTWVMGQRYLQTSKIMPAGVVAGISSLMTLFYLYKLATGGNHISPKAE 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503384|gb|AFK39758.1| unknown [Lotus japonicus]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 99/119 (83%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG  G+  KGS  SL GGV +GLLL+ AGY+SL AF K+KNSYF
Sbjct: 1   MHDFCFTIPYGLLLVGGGAFGYIHKGSIPSLLGGVVSGLLLIVAGYISLNAFGKRKNSYF 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+ +ETVCA  LT VM QRYMETSK+MPAG+VAGIS LMT FYLYK+ATGGN +P KA+
Sbjct: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAKAD 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232290|ref|NP_188687.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|11994139|dbj|BAB01160.1| unnamed protein product [Arabidopsis thaliana] gi|34365633|gb|AAQ65128.1| At3g20510 [Arabidopsis thaliana] gi|51971331|dbj|BAD44330.1| unknown protein [Arabidopsis thaliana] gi|51971899|dbj|BAD44614.1| unknown protein [Arabidopsis thaliana] gi|332642868|gb|AEE76389.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LIGGG +G+ KKGS  S AGG GTGLLL+ AGY+SLKAFEKKKNS  
Sbjct: 1   MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+V++TV AA LT VM QRY+ T KIMPAG+VAGISALMT FY+YKIATGGN+ P KAE
Sbjct: 61  AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830734|ref|XP_002883249.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata] gi|297329089|gb|EFH59508.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 101/119 (84%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCF+IPYG++LIGGG +G+ KKGS  S AGG GTGLLL+ AGY+SLKAFEKKKNS  
Sbjct: 1   MHDFCFSIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSSI 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A+V++TV AA LT VM QRY+ T KIMPAG+VAGISALMT FY+YKIATGGN+ P KAE
Sbjct: 61  AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403201|ref|NP_564579.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|12321434|gb|AAG50780.1|AC079027_3 unknown protein [Arabidopsis thaliana] gi|18491153|gb|AAL69479.1| unknown protein [Arabidopsis thaliana] gi|20466055|gb|AAM20362.1| unknown protein [Arabidopsis thaliana] gi|21592962|gb|AAM64911.1| unknown [Arabidopsis thaliana] gi|332194465|gb|AEE32586.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 100/119 (84%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+V AG++SLKAFEKKK S  
Sbjct: 1   MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A ++ETV AA LT VM QR+++T KIMPA +VAGISALMT FY+YKIATGGN IP KAE
Sbjct: 61  ATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847424|ref|XP_002891593.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata] gi|297337435|gb|EFH67852.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 101/119 (84%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+V AG++SLKAFEKKK S  
Sbjct: 1   MHDFCFTIPYGMLLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSSL 60

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
           A +++TV AA LT VM QR+++T KI+PAG+VAGISALMT FY++KIATGGN IP KAE
Sbjct: 61  ATLLQTVIAAALTFVMGQRFLQTQKIIPAGLVAGISALMTCFYVFKIATGGNHIPPKAE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	1.0	1.0	0.563	2.1e-29
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	1.0	1.0	0.537	8.2e-28
TAIR|locus:2082578	226	AT3G57280 "AT3G57280" [Arabido	0.983	0.517	0.324	1.5e-10
TAIR|locus:2057721	108	AT2G26240 [Arabidopsis thalian	0.411	0.453	0.448	3.4e-06
UNIPROTKB|F1NWB5	117	TMEM14C "Uncharacterized prote	0.436	0.444	0.396	2.4e-05
TAIR|locus:2098189	240	AT3G43520 "AT3G43520" [Arabido	0.394	0.195	0.446	0.00013
ZFIN|ZDB-GENE-070410-137	99	zgc:163080 "zgc:163080" [Danio	0.302	0.363	0.5	0.00013
ZFIN|ZDB-GENE-060825-156	107	tmem14c "transmembrane protein	0.445	0.495	0.368	0.00045

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/119 (56%), Positives = 76/119 (63%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXYLSLKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                    Y+SLKAFEKKKNS  
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:    61 AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
             A+V++TV AA LT VM QRY+ T KIMPAG+VAGISALMT FY+YKIATGGN+ P KAE
Sbjct:    61 AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/119 (53%), Positives = 74/119 (62%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXYLSLKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                    ++SLKAFEKKK S  
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:    61 AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
             A ++ETV AA LT VM QR+++T KIMPA +VAGISALMT FY+YKIATGGN IP KAE
Sbjct:    61 ATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2082578 AT3G57280 "AT3G57280" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 38/117 (32%), Positives = 52/117 (44%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXYLSLKAFEKKKNSYF 60
             +HDFCF IPY           FA                       LSLK + + K+S+ 
Sbjct:   100 IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYGGGLLALSTLSLKIWREGKSSFP 159

Query:    61 AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTK 117
              I+ + V +A++       Y  T K+ PAG+ A ISA M  FY Y + +GGN  P K
Sbjct:   160 YILGQAVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKK 216

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2057721 AT2G26240 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query:    57 NSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLY 105
             N   A  I  V +A LT +M  RY+ T K++PAG+V+ +S +MTG YL+
Sbjct:    54 NPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLH 102

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NWB5 TMEM14C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query:    49 LKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTG 101
             L A++  +N    + I  + +  LTAVM  R+  + K MPAG++AG+S LM G
Sbjct:    53 LGAYQLSQNPS-NVWISLITSGTLTAVMGTRFYNSGKFMPAGLIAGVSLLMVG 104

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2098189 AT3G43520 "AT3G43520" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query:    61 AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKI 107
             A  +  V A  L  VM  RYM + KI PAG+V+ +S +MTG Y++ I
Sbjct:   189 ASTVGVVMAGALMYVMGTRYMRSKKIFPAGVVSIMSFIMTGGYIHGI 235

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

ZFIN|ZDB-GENE-070410-137 zgc:163080 "zgc:163080" [Danio rerio (taxid:7955)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query:    64 IETVCAALLTAVMAQRYMETSKIMPAGIVAGISALM 99
             I  + A +L AVM  R+ ++ K+MPAGI+AG+S LM
Sbjct:    57 ISLLSAGVLAAVMGMRFRKSGKLMPAGIMAGLSLLM 92

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060825-156 tmem14c "transmembrane protein 14C" [Danio rerio (taxid:7955)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query:    62 IVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKA 118
             I +    +  L A+M +R+  + KI PAG++AG S LM    L K+  G  Q P K+
Sbjct:    55 IWVSLAASGTLAAIMGKRFYNSRKITPAGLIAGASVLM----LAKLGAGMLQKPQKS 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119        88   0.00091  102 3  11 22  0.38    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  510 (54 KB)
  Total size of DFA:  92 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.12u 0.17s 8.29t   Elapsed:  00:00:00
  Total cpu time:  8.12u 0.17s 8.29t   Elapsed:  00:00:00
  Start:  Sat May 11 02:39:07 2013   End:  Sat May 11 02:39:07 2013

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006783 "heme biosynthetic process" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P436	TM14C_DANRE	No assigned EC number	0.3394	0.8235	0.9158	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	8e-23
COG5548	105	COG5548, COG5548, Small integral membrane protein	3e-07

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 84.6 bits (210), Expect = 8e-23
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 4   FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIV 63
               I Y  ++  GGI+G+AK GS  SL  G+  G LL    YL        +N  + + 
Sbjct: 1   DHPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLL------SQNQPYGLE 54

Query: 64  IETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLY 105
           +  + +A+L  VM  RY++T K MPAG+V G+SA M  FY Y
Sbjct: 55  LALLASAVLAGVMGPRYIKTRKFMPAGLVLGLSAAMLAFYYY 96

This family of short membrane proteins are as yet uncharacterized. Length = 96

>gnl|CDD|227835 COG5548, COG5548, Small integral membrane protein [Function unknown]

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 8  IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETV 67
          I   ++   GG++G+ +K S  SL  GV +GLLL  A YL L      +   + +++ TV
Sbjct: 8  IALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQL------QGQTWGLILATV 61

Query: 68 CAALLTAVMAQRYMETSKIMPAGIVA 93
           +A L    A R + + K +PAG+  
Sbjct: 62 VSAALLVFFALRLVRSRKPVPAGLTT 87

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG4267	110	consensus Predicted membrane protein [Function unk	100.0
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.96
COG5548	105	Small integral membrane protein [Function unknown]	99.87

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=8.4e-36  Score=209.80  Aligned_cols=108  Identities=52%  Similarity=0.807  Sum_probs=99.0

Q ss_pred             CccccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHH-HHHHHHHHHHH
Q 033422            1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKK-NSYFAIVIETV-CAALLTAVMAQ   78 (119)
Q Consensus         1 ~~Dfc~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~-~~~~~~~~~~~-~s~~L~~~m~~   78 (119)
                      |||+|++++|+.|+++||+|||.|+||+|||++|+.+|++   +||.+++.|++++ ++.    +++. +|++|+.+|+.
T Consensus         1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~----~~l~~~s~~L~gvmg~   73 (110)
T KOG4267|consen    1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSL----VALGGTSAALLGVMGQ   73 (110)
T ss_pred             CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCch----hHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999975   5677777777765 443    5666 89999999999


Q ss_pred             HHHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033422           79 RYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIP  115 (119)
Q Consensus        79 R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~~~p  115 (119)
                      ||.+|||+||+|+++.+|++|++||.|+..++.|++|
T Consensus        74 R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~  110 (110)
T KOG4267|consen   74 RFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP  110 (110)
T ss_pred             hhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999887

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.96  E-value=6.1e-31  Score=181.68  Aligned_cols=96  Identities=49%  Similarity=0.829  Sum_probs=87.1

Q ss_pred             ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033422            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMET   83 (119)
Q Consensus         4 fc~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt   83 (119)
                      ||++++|++++.+||++||+|+||+|||++|+++|++++.++++++      +|+++++.+++.+|.+|+.+|++|+.||
T Consensus         1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~------~~~~~~~~~~l~~s~~L~~~m~~R~~~t   74 (96)
T PF03647_consen    1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL------TNQKWGSELALAISAVLAGVMGYRYIKT   74 (96)
T ss_dssp             HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred             CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh------ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence            7999999999999999999999999999999999999999998875      3667888899999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHHHHH
Q 033422           84 SKIMPAGIVAGISALMTGFYLY  105 (119)
Q Consensus        84 ~K~mPaGl~~~ls~~~~~~y~~  105 (119)
                      +|+||+|+++++|++|+++|.|
T Consensus        75 ~k~~Pagl~~~~s~~~~~~y~Y   96 (96)
T PF03647_consen   75 RKFMPAGLMALLSGAMLAFYYY   96 (96)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHC-
T ss_pred             CCCccHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999976

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=99.87  E-value=1e-22  Score=140.63  Aligned_cols=92  Identities=33%  Similarity=0.509  Sum_probs=82.5

Q ss_pred             chHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033422            6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSK   85 (119)
Q Consensus         6 ~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K   85 (119)
                      -.+.++.|..+||+|||.||+|++||++|+.+|+.+.+++|+.+|      +++|++..++..|++|...++.|+.||||
T Consensus         6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRK   79 (105)
T COG5548           6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILATVVSAALLVFFALRLVRSRK   79 (105)
T ss_pred             HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehHHHHHHHHHHhcchhccccCC
Confidence            468999999999999999999999999999999999999999865      56689999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHH
Q 033422           86 IMPAGIVAGISALMTGFY  103 (119)
Q Consensus        86 ~mPaGl~~~ls~~~~~~y  103 (119)
                      +||++++++.+....-+|
T Consensus        80 pvP~~Lt~lgg~~s~y~y   97 (105)
T COG5548          80 PVPAGLTTLGGMLSLYVY   97 (105)
T ss_pred             CcchHHHHHhhhhhhhhe
Confidence            999988877665544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	9e-18
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	7e-16

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens} Length = 121

 Score = 72.0 bits (176), Expect = 9e-18
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60
           +    F   Y  ++  GGI+G+ K GS  SLA G+  G L     Y              
Sbjct: 17  VPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQL-------SQDPR 69

Query: 61  AIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKI 107
            + +    +  L  +M  R+  + K MPAG++AG S LM       +
Sbjct: 70  NVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSM 116

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 67.0 bits (163), Expect = 7e-16
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 6   FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIE 65
               Y  ++  G I G+ ++G   SL  G+  G L     Y          N    + + 
Sbjct: 13  IGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRV-------SNDKRDVKVS 65

Query: 66  TVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKI 107
              A  L  +M  R+  + KIMPAG+VAG+S +M    +  +
Sbjct: 66  LFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLL 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.92
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.92

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.92  E-value=7.4e-31  Score=184.14  Aligned_cols=97  Identities=27%  Similarity=0.445  Sum_probs=87.5

Q ss_pred             cchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033422            5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETS   84 (119)
Q Consensus         5 c~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~   84 (119)
                      +++++|++++++||++||+|+||+|||++|+.+|+++..+   +++.|+++   + ++++|+++|++|+.+|+.||.|||
T Consensus        12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~~---~~~~~~~~---~-~~~l~l~~S~~L~~~m~~R~~~t~   84 (108)
T 2loo_A           12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYG---AYRVSNDK---R-DVKVSLFTAFFLATIMGVRFKRSK   84 (108)
Confidence            5899999999999999999999999999999999987444   45555543   2 788999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHh
Q 033422           85 KIMPAGIVAGISALMTGFYLYKIA  108 (119)
Q Consensus        85 K~mPaGl~~~ls~~~~~~y~~~l~  108 (119)
                      |+||+|+++++|++|++||+|+++
T Consensus        85 K~mPaGl~a~lS~~m~~~y~~~l~  108 (108)
T 2loo_A           85 KIMPAGLVAGLSLMMILRLVLLLL  108 (108)
Confidence            999999999999999999999874

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.92  E-value=2.7e-30  Score=184.46  Aligned_cols=101  Identities=30%  Similarity=0.483  Sum_probs=89.5

Q ss_pred             ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033422            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMET   83 (119)
Q Consensus         4 fc~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt   83 (119)
                      -+++++||+++++||++||+|+||+|||+||+.+|+++..++|   +.|+++++    .++++++|++|+.+|+.||.||
T Consensus        20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a~---~~~~~~~~----~~l~l~~S~~L~~~mg~R~~~t   92 (121)
T 2los_A           20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAY---QLSQDPRN----VWVFLATSGTLAGIMGMRFYHS   92 (121)
Confidence            4589999999999999999999999999999999998655544   55655443    4678899999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhhCC
Q 033422           84 SKIMPAGIVAGISALMTGFYLYKIATGG  111 (119)
Q Consensus        84 ~K~mPaGl~~~ls~~~~~~y~~~l~~~~  111 (119)
                      ||+||+|+++++|++|++||.+++++.+
T Consensus        93 ~K~mPaGlva~lS~~m~~~~~~~ll~~~  120 (121)
T 2los_A           93 GKFMPAGLIAGASLLMVAKVGVSMFNRP  120 (121)
Confidence            9999999999999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00