Citrus Sinensis ID: 033477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Secondary Structure (PSIPRED)
ccHHHHccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEEccccEEEEEEccccEEEEEEccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcc
Coil and Loop (DISEMBL)
MSEETKKSVTGALvvkpnsddrkptvavsqsgkrIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKdfdkkhgptwhcivgsnfgsyvthetnHFVYFYLDQKAVLLFKSG
Flexible Loop (DISEMBL)
mseetkksvtgalvvkpnsddrkptvavsqsgkriiiksadmkeDLQKEAVDIAIAafeknsvekdVAERIKkdfdkkhgptwHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Low Complexity Region (SEG)
MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Disordered region (IsUnstruct)
************************************************EAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLF***
Disordered Region (DISOPRED)
***********************************IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Disordered Region (DISEMBL)
**********GALVVKPN************SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Disordered Region (DISPRO)
********************************KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q78P75	89	Dynein light chain 2, cyt	yes	no	0.745	0.988	0.670	2e-31
Q9D0M5	89	Dynein light chain 2, cyt	yes	no	0.745	0.988	0.670	2e-31
Q96FJ2	89	Dynein light chain 2, cyt	yes	no	0.745	0.988	0.670	2e-31
Q3MHR3	89	Dynein light chain 2, cyt	yes	no	0.745	0.988	0.670	2e-31
O02414	89	Dynein light chain LC6, f	N/A	no	0.745	0.988	0.681	3e-31
Q24117	89	Dynein light chain 1, cyt	yes	no	0.745	0.988	0.659	5e-31
O96860	89	Dynein light chain 2, cyt	yes	no	0.745	0.988	0.659	7e-31
Q39580	91	Dynein 8 kDa light chain,	N/A	no	0.771	1.0	0.626	8e-31
Q22799	89	Dynein light chain 1, cyt	yes	no	0.728	0.966	0.651	2e-30
P63170	89	Dynein light chain 1, cyt	no	no	0.728	0.966	0.639	7e-30

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.
Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q AVLLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAVLLFKSG 89

Anthocidaris crassispina (taxid: 7629)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 73/88 (82%)

Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRN 61

Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 28  VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
           ++    + +IK+ADM E++Q +AVD A  A EK ++EKD+A  IKK+FD+KH PTWHCIV
Sbjct: 1   MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIV 60

Query: 88  GSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           G NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 72/86 (83%)

Query: 33  KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
           ++ +IK+ADM +D+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4   RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 93  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 72/86 (83%)

Query: 33  KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
           ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4   RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFG 63

Query: 93  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
356556098	122	PREDICTED: dynein light chain 2, cytopla	1.0	0.967	0.737	7e-47
351723219	118	uncharacterized protein LOC100527842 [Gl	1.0	1.0	0.745	2e-46
427199398	125	dynein light chain [Morella rubra]	1.0	0.944	0.728	3e-46
449465567	117	PREDICTED: dynein light chain 1, cytopla	0.991	1.0	0.745	1e-45
356529436	157	PREDICTED: dynein light chain 2, cytopla	1.0	0.751	0.737	3e-45
224130510	120	predicted protein [Populus trichocarpa]	0.991	0.975	0.754	8e-45
225431758	117	PREDICTED: dynein 8 kDa light chain, fla	0.991	1.0	0.745	1e-44
351723769	118	uncharacterized protein LOC100305908 [Gl	1.0	1.0	0.754	7e-44
357478823	130	Dynein light chain 1 cytoplasmic-like pr	1.0	0.907	0.676	3e-42
297804630	123	At4g15930 [Arabidopsis lyrata subsp. lyr	0.957	0.918	0.717	1e-41

>gi|356556098|ref|XP_003546364.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max]

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 105/122 (86%), Gaps = 4/122 (3%)

Query: 1   MSEETKKSVTGALVVKPNSDDRK----PTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIA 56
           MSE+ KK++ GAL  +PNSDD+K    P+ A +   K++IIKSADM  D+QKEAVDIA+A
Sbjct: 1   MSEDAKKNIAGALTARPNSDDQKLSPLPSPAPAVPPKKVIIKSADMIPDMQKEAVDIAVA 60

Query: 57  AFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFK 116
           AFEK +VEKDVAE+IKK+FDK+HGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFK
Sbjct: 61  AFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK 120

Query: 117 SG 118
           SG
Sbjct: 121 SG 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723219|ref|NP_001238295.1| uncharacterized protein LOC100527842 [Glycine max] gi|255633354|gb|ACU17034.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 102/118 (86%)

Query: 1   MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
           MSEE KK+  GAL  +P SDD+K   A++   K++IIKSADM  D+QKEAVDIA+AAFE+
Sbjct: 1   MSEEAKKNFVGALTARPTSDDQKQAPALNVPPKKVIIKSADMIPDMQKEAVDIAVAAFER 60

Query: 61  NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
            +VEKDVAE+IKK+FDK+HGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  YNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199398|gb|AFY26900.1| dynein light chain [Morella rubra]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/125 (72%), Positives = 105/125 (84%), Gaps = 7/125 (5%)

Query: 1   MSEETKKSVTGALVVKP-NSDDRKPTVAVSQ------SGKRIIIKSADMKEDLQKEAVDI 53
           MSE+ K+++ G L+VKP +SDDRKP+ A         SGKR+IIKSADM  D+QKEA+D 
Sbjct: 1   MSEDAKRAIQGGLMVKPPSSDDRKPSAAAGPRPATPPSGKRVIIKSADMLPDMQKEAIDT 60

Query: 54  AIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVL 113
           AIAAFEK+SVEKDVAE IKK+FD++HG TWHCIVG NFGSYVTHETNHFVYFYLDQKAVL
Sbjct: 61  AIAAFEKHSVEKDVAEHIKKEFDQRHGSTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVL 120

Query: 114 LFKSG 118
           LFKSG
Sbjct: 121 LFKSG 125

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465567|ref|XP_004150499.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus] gi|449528079|ref|XP_004171034.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 105/118 (88%), Gaps = 1/118 (0%)

Query: 1   MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
           MS + K+S+ G L+VK  S+DRKP  AV+ +GK+I+IKSADM  D+QK+A+D+AIAAFEK
Sbjct: 1   MSNDAKRSIQGTLLVKSVSEDRKPP-AVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEK 59

Query: 61  NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           +SVEKD+AE IKK+FDK+HGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 60  HSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529436|ref|XP_003533298.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 104/122 (85%), Gaps = 4/122 (3%)

Query: 1   MSEETKKSVTGALVVKPNSDDRKPTVAVSQ----SGKRIIIKSADMKEDLQKEAVDIAIA 56
           MSE+ KK++ GAL  +PNSDD+KP+   S       K++IIKSADM  D+QKEAVDIA+A
Sbjct: 36  MSEDAKKNIAGALTARPNSDDQKPSPLPSPAPAVPPKKVIIKSADMIPDMQKEAVDIAVA 95

Query: 57  AFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFK 116
           AFEK +VEKDVAE+IKK+FDK+HGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFK
Sbjct: 96  AFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK 155

Query: 117 SG 118
           SG
Sbjct: 156 SG 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130510|ref|XP_002328627.1| predicted protein [Populus trichocarpa] gi|118482080|gb|ABK92971.1| unknown [Populus trichocarpa] gi|222838609|gb|EEE76974.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 2   SEETKKSVTGALVVKPNSDDRKPT-VAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
           SE+ K+S+TG + V+ +S  RK +  A +  GK+IIIK+ADMK+D+QKEAVDIAIAAFE+
Sbjct: 3   SEDMKRSITGGVKVENDSYYRKSSPAAAAPPGKKIIIKNADMKDDMQKEAVDIAIAAFER 62

Query: 61  NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           N+VEKDVAE IKK+FDKKHGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 63  NNVEKDVAEHIKKEFDKKHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431758|ref|XP_002270438.1| PREDICTED: dynein 8 kDa light chain, flagellar outer arm [Vitis vinifera] gi|147857576|emb|CAN81003.1| hypothetical protein VITISV_006994 [Vitis vinifera]

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 1   MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
           M+E+ K++   AL +K +SDDRK ++A S S KR+IIKSADMK+D+QKEA+DIAIAA E 
Sbjct: 1   MAEDLKRNGALALSLKQSSDDRKLSLAASAS-KRVIIKSADMKDDMQKEAIDIAIAASEN 59

Query: 61  NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           +SVEK++AE IKK+FDKKHGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 60  HSVEKNIAEYIKKEFDKKHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723769|ref|NP_001238570.1| uncharacterized protein LOC100305908 [Glycine max] gi|255626947|gb|ACU13818.1| unknown [Glycine max]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 101/118 (85%)

Query: 1   MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
           MSEE KK+  GAL  +PNSD+ KP    +   K++IIKSADM  D+QKEAVDIA+AAFEK
Sbjct: 1   MSEEAKKNFAGALTARPNSDEPKPAPVPAVPPKKVIIKSADMIPDMQKEAVDIAVAAFEK 60

Query: 61  NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
            +VEKDVAE+IKK+FDK+HGPTWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  YNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478823|ref|XP_003609697.1| Dynein light chain 1 cytoplasmic-like protein [Medicago truncatula] gi|355510752|gb|AES91894.1| Dynein light chain 1 cytoplasmic-like protein [Medicago truncatula] gi|388518223|gb|AFK47173.1| unknown [Medicago truncatula]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 100/130 (76%), Gaps = 12/130 (9%)

Query: 1   MSEETKKSVTG---ALVVKPNSDDRKPTVAVSQSG---------KRIIIKSADMKEDLQK 48
           MSEE KK   G   AL+ K  ++DRKP V    S          K++IIKSADM  D+QK
Sbjct: 1   MSEEAKKHSAGGGAALMAKSLTEDRKPLVTSPLSASASPATPATKKVIIKSADMLPDMQK 60

Query: 49  EAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLD 108
           EAVDIA+ AFE+++VEKDVAE IKK+FDK+HGPTWHCIVG NFGSYVTHETNHFVYFYLD
Sbjct: 61  EAVDIAVVAFERHNVEKDVAETIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLD 120

Query: 109 QKAVLLFKSG 118
           QKAVLLFKSG
Sbjct: 121 QKAVLLFKSG 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804630|ref|XP_002870199.1| At4g15930 [Arabidopsis lyrata subsp. lyrata] gi|297316035|gb|EFH46458.1| At4g15930 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 97/117 (82%), Gaps = 4/117 (3%)

Query: 6   KKSVTGALVVKPNSDDRKPTV----AVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKN 61
           KKSV G    +  SDDR+ ++    A   +GKR +IKSADMK+D+QKEA+DIAI+AFEK 
Sbjct: 7   KKSVNGGAPAQTISDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIDIAISAFEKY 66

Query: 62  SVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKD+AE IKK+FDKKHG TWHCIVG NFGSYVTHETNHFVYFYL+QKAVLLFKSG
Sbjct: 67  SVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLEQKAVLLFKSG 123

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2129805	123	AT4G15930 "AT4G15930" [Arabido	1.0	0.959	0.707	9.6e-41
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	0.771	1.0	0.659	8.8e-31
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	0.762	0.989	0.655	2.3e-30
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	0.745	0.988	0.670	3e-30
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	0.745	0.988	0.670	3e-30
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	0.745	0.988	0.670	3e-30
MGI|MGI:1915347	89	Dynll2 "dynein light chain LC8	0.745	0.988	0.670	3e-30
RGD|619860	89	Dynll2 "dynein light chain LC8	0.745	0.988	0.670	3e-30
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.762	0.714	0.644	4.9e-30
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.745	0.988	0.659	7.9e-30

TAIR|locus:2129805 AT4G15930 "AT4G15930" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 87/123 (70%), Positives = 99/123 (80%)

Query:     1 MSE-ETKKSVTGALVVKPNSDDRK---PTVAVSQ-SGKRIIIKSADMKEDLQKEAVDIAI 55
             MS+   KKSV G    +   DDR+   P V  S  +GKR +IKSADMK+D+QKEA++IAI
Sbjct:     1 MSDGRRKKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAI 60

Query:    56 AAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLF 115
             +AFEK SVEKD+AE IKK+FDKKHG TWHCIVG NFGSYVTHETNHFVYFYLDQKAVLLF
Sbjct:    61 SAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLF 120

Query:   116 KSG 118
             KSG
Sbjct:   121 KSG 123

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 60/91 (65%), Positives = 75/91 (82%)

Query:    28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
             V+ S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIV
Sbjct:     1 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 60

Query:    88 GSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             G NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    61 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 59/90 (65%), Positives = 74/90 (82%)

Query:    29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
             + S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG
Sbjct:     2 TMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 61

Query:    89 SNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
              NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 RNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

MGI|MGI:1915347 Dynll2 "dynein light chain LC8-type 2" [Mus musculus (taxid:10090)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0016459 "myosin complex" evidence=IDA

GO:0030286 "dynein complex" evidence=NAS

GO:0046907 "intracellular transport" evidence=NAS

RGD|619860 Dynll2 "dynein light chain LC8-type 2" [Rattus norvegicus (taxid:10116)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEP

GO:0008092 "cytoskeletal protein binding" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA;ISO

GO:0030286 "dynein complex" evidence=IEA

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 58/90 (64%), Positives = 74/90 (82%)

Query:    29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
             + + ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG
Sbjct:    37 NMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 96

Query:    89 SNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
              NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    97 RNFGSYVTHETKHFIYFYLGQVAILLFKSG 126

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 58/88 (65%), Positives = 73/88 (82%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
             FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    62 FGSYVTHETRHFIYFYLGQVAILLFKSG 89

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.6511	0.7288	0.9662	yes	no
Q9UR05	DYL1_SCHPO	No assigned EC number	0.6144	0.7033	0.9764	yes	no
Q78P75	DYL2_RAT	No assigned EC number	0.6704	0.7457	0.9887	yes	no
Q9D0M5	DYL2_MOUSE	No assigned EC number	0.6704	0.7457	0.9887	yes	no
Q86A88	DYL_DICDI	No assigned EC number	0.5505	0.7457	0.9670	yes	no
O94111	DYL1_EMENI	No assigned EC number	0.6296	0.6864	0.8617	yes	no
Q24117	DYL1_DROME	No assigned EC number	0.6590	0.7457	0.9887	yes	no
Q96FJ2	DYL2_HUMAN	No assigned EC number	0.6704	0.7457	0.9887	yes	no
Q3MHR3	DYL2_BOVIN	No assigned EC number	0.6704	0.7457	0.9887	yes	no
O96860	DYL2_DROME	No assigned EC number	0.6590	0.7457	0.9887	yes	no
P63169	DYL1_RABIT	No assigned EC number	0.6395	0.7288	0.9662	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__2725__AT4G15930.1 annotation not avaliable (123 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	2e-46
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	4e-45
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	6e-20

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  144 bits (365), Expect = 2e-46
 Identities = 54/84 (64%), Positives = 70/84 (83%)

Query: 35  IIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSY 94
            ++K+ADM E++Q++A++ A  A EK +VEKD+A  IKK+FDKK+GPTWHCIVG NFGSY
Sbjct: 3   AVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSY 62

Query: 95  VTHETNHFVYFYLDQKAVLLFKSG 118
           VTHET HF+YFY+ Q A LLFK+G
Sbjct: 63  VTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score =  141 bits (356), Expect = 4e-45
 Identities = 57/89 (64%), Positives = 73/89 (82%)

Query: 30  QSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGS 89
            S ++ ++K+ADM ED+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG 
Sbjct: 2   MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61

Query: 90  NFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  NFGSYVTHETKHFIYFYLGQVAILLFKSG 90

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 78.5 bits (193), Expect = 6e-20
 Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 37  IKSADMKEDLQKEAVDIA---IAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGS 93
           ++++DM   LQ  A   A   + A       K +A  +KK+FD  +GP WHCIVG++FGS
Sbjct: 38  VRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGS 97

Query: 94  YVTHETNHFVYFYLDQKAVLLFKS 117
           YVTH T  F+YF +D+  +LLFK+
Sbjct: 98  YVTHSTGGFLYFSIDKVYILLFKT 121

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PTZ00059	90	dynein light chain; Provisional	100.0
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.06
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	86.47

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=2.4e-39  Score=218.60  Aligned_cols=86  Identities=65%  Similarity=1.114  Sum_probs=83.8

Q ss_pred             CceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q 033477           33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAV  112 (118)
Q Consensus        33 ~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~  112 (118)
                      .++.|+.+|||++||++|++++.+|+++|+.++|||++||+.||++|||+||||||++|||++||++++||||++++++|
T Consensus         5 ~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~~v   84 (90)
T PTZ00059          5 RKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAI   84 (90)
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCEEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 033477          113 LLFKSG  118 (118)
Q Consensus       113 LlfKtg  118 (118)
                      ||||+|
T Consensus        85 LlfK~~   90 (90)
T PTZ00059         85 LLFKSG   90 (90)
T ss_pred             EEEecC
Confidence            999997

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=3.5e-39  Score=216.06  Aligned_cols=87  Identities=60%  Similarity=1.062  Sum_probs=84.1

Q ss_pred             CCceEEeeCCCCHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCE
Q 033477           32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNS-VEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQK  110 (118)
Q Consensus        32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~-~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~  110 (118)
                      ...+.|+.+|||++||++|++++.+|+++|+ ++++||..||+.||++||++||||||++|||+|||+.++||||++|.+
T Consensus         3 ~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l   82 (90)
T KOG3430|consen    3 ERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVL   82 (90)
T ss_pred             CccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceE
Confidence            4568899999999999999999999999999 789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 033477          111 AVLLFKSG  118 (118)
Q Consensus       111 ~~LlfKtg  118 (118)
                      +|||||++
T Consensus        83 ~illfK~~   90 (90)
T KOG3430|consen   83 AILLFKCA   90 (90)
T ss_pred             EEEEEecC
Confidence            99999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=4.5e-38  Score=224.34  Aligned_cols=90  Identities=40%  Similarity=0.720  Sum_probs=85.7

Q ss_pred             CCCCCceEEeeCCCCHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEE
Q 033477           29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNS---VEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYF  105 (118)
Q Consensus        29 ~~~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~---~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F  105 (118)
                      +..+.++.|+.+|||++||++|+++|.+|+++++   +++|||.+||+.||++|||+||||||++|||+|||++++||||
T Consensus        30 ~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF  109 (128)
T PLN03058         30 QKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYF  109 (128)
T ss_pred             hccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEE
Confidence            3457899999999999999999999999999984   5799999999999999999999999999999999999999999


Q ss_pred             EeCCEEEEEEeeC
Q 033477          106 YLDQKAVLLFKSG  118 (118)
Q Consensus       106 ~~~~~~~LlfKtg  118 (118)
                      ++|+++|||||||
T Consensus       110 ~ig~~aiLLfKt~  122 (128)
T PLN03058        110 SIDKVYILLFKTA  122 (128)
T ss_pred             EECCEEEEEEecc
Confidence            9999999999996

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=6.6e-38  Score=210.31  Aligned_cols=87  Identities=52%  Similarity=0.900  Sum_probs=82.5

Q ss_pred             CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEE
Q 033477           32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKA  111 (118)
Q Consensus        32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~  111 (118)
                      ..+++|+.+|||++||++|+++|.+|++++++++++|++||+.||++|||+||||||++|||++||+++++|||++++++
T Consensus         3 ~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~~   82 (89)
T PF01221_consen    3 ENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNIA   82 (89)
T ss_dssp             SCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTEE
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeC
Q 033477          112 VLLFKSG  118 (118)
Q Consensus       112 ~LlfKtg  118 (118)
                      |||||||
T Consensus        83 ~li~kt~   89 (89)
T PF01221_consen   83 FLIFKTQ   89 (89)
T ss_dssp             EEEEEE-
T ss_pred             EEEEecC
Confidence            9999996

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.06  E-value=0.0087  Score=38.67  Aligned_cols=54  Identities=15%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             CchHHHHHHHHHHhcccCCCceEEEEeCC-ceeeEEecCCcEEEEEeCCEEEEEEe
Q 033477           62 SVEKDVAERIKKDFDKKHGPTWHCIVGSN-FGSYVTHETNHFVYFYLDQKAVLLFK  116 (118)
Q Consensus        62 ~~ekdiA~~IK~~lD~~yG~~WhcIVGk~-Fgs~vthe~~~~i~F~~~~~~~LlfK  116 (118)
                      .+..++++.|.+.+.++||+.+-||++++ |.....+. ..|.-...++...++|+
T Consensus        22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            55678999999999999999999999995 65554444 78888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=86.47  E-value=6.1  Score=32.24  Aligned_cols=54  Identities=20%  Similarity=0.389  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHhcccCC-CceEEEEeC------C--ceeeEEecCCcEEE-EEeCCEEEEEEee
Q 033477           64 EKDVAERIKKDFDKKHG-PTWHCIVGS------N--FGSYVTHETNHFVY-FYLDQKAVLLFKS  117 (118)
Q Consensus        64 ekdiA~~IK~~lD~~yG-~~WhcIVGk------~--Fgs~vthe~~~~i~-F~~~~~~~LlfKt  117 (118)
                      ..+.|..||+.||+-.- -.+-+||-.      +  |-.+..+...++|. |.-|+..++||||
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            46789999999999644 357888833      1  11222345666666 5678999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		7e-33
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		1e-32
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		2e-32
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		3e-32
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		4e-32
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		7e-32
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		1e-31
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		1e-31
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		4e-31
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		5e-31
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		9e-31
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		7e-28
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-19

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score =  135 bits (339), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 74/90 (82%)
Query: 29  SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
           S S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG
Sbjct: 5   SMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 64
Query: 89  SNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
            NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 65  RNFGSYVTHETKHFIYFYLGQVAILLFKSG 94

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 5   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 64
Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 65  FGSYVTHETKHFIYFYLGQVAILLFKSG 92

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 28  VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
           +  S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIV
Sbjct: 1   MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 60
Query: 88  GSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           G NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61  GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 73/88 (82%)
Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETRHFIYFYLGQVAILLFKSG 89

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score =  131 bits (330), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 33  KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
           ++ +IK+ADM EDLQ++A+D A  A EK ++EKD+A  IKK+FD+KH PTWHC+VG NFG
Sbjct: 4   RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFG 63
Query: 93  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET+HF+YFY+ Q AVLLFKSG
Sbjct: 64  SYVTHETHHFIYFYIGQVAVLLFKSG 89

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
           S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2   SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFK G
Sbjct: 62  FGSYVTHETRHFIYFYLGQVAILLFKEG 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)
Query: 28  VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
           +  S ++ +IK+ADM E++Q++AVD A  A EK ++E D+A  IKK+FDKK+ PTWHCIV
Sbjct: 1   MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIV 60
Query: 88  GSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           G NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61  GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 31  SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG-- 88
           S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG  
Sbjct: 2   SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRS 61
Query: 89  SNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
            NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  GNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 72/86 (83%)
Query: 33  KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
           ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4   RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFG 63
Query: 93  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 71/85 (83%)
Query: 34  RIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGS 93
           + +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGS
Sbjct: 1   KAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 94  YVTHETNHFVYFYLDQKAVLLFKSG 118
           YVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61  YVTHETKHFIYFYLGQVAILLFKSG 85

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 36  IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYV 95
           ++K+ DM E++Q +A+D A  A +K +VEKD+A  IKK+FD+K+ PTWHC+VG NFGSYV
Sbjct: 20  VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 96  THETNHFVYFYLDQKAVLLFKSG 118
           THET +F+YFY+ Q A+LLFKSG
Sbjct: 80  THETKNFIYFYIGQVAILLFKSG 102

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 36  IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYV 95
           I+K++D+ + L+++ + I+  A +K  +E+D+A  +KK  D K+G TWH IVG NFGSYV
Sbjct: 15  IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYV 74
Query: 96  THETNHFVYFYLDQKAVLLFKS 117
           THE  HFVYFY+   A L+FK+
Sbjct: 75  THEKGHFVYFYIGPLAFLVFKT 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	7e-45
1yo3_A	102	Dynein light chain 1; structural genomics consorti	2e-43

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  139 bits (353), Expect = 7e-45
 Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 24  PTVAVSQSGK-RIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPT 82
           P  ++S   K   I+K++D+ + L+++ + I+  A +K  +E+D+A  +KK  D K+G T
Sbjct: 2   PLGSMSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNT 61

Query: 83  WHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           WH IVG NFGSYVTHE  HFVYFY+   A L+FK+ 
Sbjct: 62  WHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  136 bits (344), Expect = 2e-43
 Identities = 51/100 (51%), Positives = 71/100 (71%)

Query: 19  SDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKK 78
           S       +     +  ++K+ DM E++Q +A+D A  A +K +VEKD+A  IKK+FD+K
Sbjct: 3   SSHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRK 62

Query: 79  HGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           + PTWHC+VG NFGSYVTHET +F+YFY+ Q A+LLFKSG
Sbjct: 63  YDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=9.9e-42  Score=228.84  Aligned_cols=86  Identities=66%  Similarity=1.145  Sum_probs=84.4

Q ss_pred             CceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q 033477           33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAV  112 (118)
Q Consensus        33 ~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~  112 (118)
                      .+++|+.+|||++||++|+++|.+|+++|+.++|||++||+.||++|||+||||||++|||++||++++||||++|+++|
T Consensus         4 ~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~~i   83 (89)
T 3rjs_A            4 RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQVAV   83 (89)
T ss_dssp             CCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTEEE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 033477          113 LLFKSG  118 (118)
Q Consensus       113 LlfKtg  118 (118)
                      ||||||
T Consensus        84 LlfKtg   89 (89)
T 3rjs_A           84 LLFKSG   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            999997

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=8.7e-41  Score=229.43  Aligned_cols=89  Identities=56%  Similarity=0.994  Sum_probs=84.0

Q ss_pred             CCCCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCC
Q 033477           30 QSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQ  109 (118)
Q Consensus        30 ~~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~  109 (118)
                      ..+.+++|+.+|||++||++|+++|.+|+++|++++|||++||++||++|||+||||||++|||+|||++++||||++++
T Consensus        14 ~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~   93 (102)
T 1yo3_A           14 LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ   93 (102)
T ss_dssp             ----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence            44778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeC
Q 033477          110 KAVLLFKSG  118 (118)
Q Consensus       110 ~~~LlfKtg  118 (118)
                      ++|||||||
T Consensus        94 ~aiLlfKt~  102 (102)
T 1yo3_A           94 VAILLFKSG  102 (102)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999997

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-41  Score=228.07  Aligned_cols=87  Identities=46%  Similarity=0.847  Sum_probs=84.6

Q ss_pred             CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEE
Q 033477           32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKA  111 (118)
Q Consensus        32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~  111 (118)
                      ..+++|+.+|||++||++|+++|.+|+++|++++|||++||++||++|||+||||||++|||++||++++||||++++++
T Consensus        11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~a   90 (97)
T 4ds1_A           11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLA   90 (97)
T ss_dssp             -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEE
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeC
Q 033477          112 VLLFKSG  118 (118)
Q Consensus       112 ~LlfKtg  118 (118)
                      |||||||
T Consensus        91 iLlfKtg   97 (97)
T 4ds1_A           91 FLVFKTA   97 (97)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	7e-43

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  133 bits (336), Expect = 7e-43
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 33  KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
           ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 2   RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 61

Query: 93  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  SYVTHETRHFIYFYLGQVAILLFKSG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.3e-41  Score=223.87  Aligned_cols=86  Identities=66%  Similarity=1.124  Sum_probs=84.1

Q ss_pred             CceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q 033477           33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAV  112 (118)
Q Consensus        33 ~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~  112 (118)
                      .+++|+.+|||++||++|+++|.+|+++|++++|||++||+.||++|||+||||||++|||++||++++||||++++++|
T Consensus         2 ~k~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~~~   81 (87)
T d3e2ba1           2 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI   81 (87)
T ss_dssp             CCEEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTEEE
T ss_pred             CcceEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 033477          113 LLFKSG  118 (118)
Q Consensus       113 LlfKtg  118 (118)
                      ||||||
T Consensus        82 Ll~Ktg   87 (87)
T d3e2ba1          82 LLFKSG   87 (87)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999998