Citrus Sinensis ID: 033482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEVTIADS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHcccEEEccEEcccccEEEEEEcccccccccccEEEEEEEEEEEEEEccccccEEEEcccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHcEEEEEEEcccHHHHHHHHHHHHHHHHHcccEEEccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHcccHHHHHEcccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mayaamkptkpgleEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGakdkrlrvkgpvrmptkvlhittrkspcgegtntwDRFELRVHKRVIDlfsspditsitiepgvEVEVTIADS
Flexible Loop (DISEMBL)
mayaamkptkpgleeaQEQIHKIritlssknvknleKVCTdlvrgakdkrlrvkgpvrmptkvlhittrkspcgegtntWDRFELRVHKRVIDlfsspditsitiepgvevEVTIADS
Low Complexity Region (SEG)
MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEVTIADS
Disordered region (IsUnstruct)
*********************KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEV*****
Disordered Region (DISOPRED)
*********************KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEVTIAD*
Disordered Region (DISEMBL)
****************QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEVTIADS
Disordered Region (DISPRO)
*************EEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEVTIAD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYAAMKPTKPGxxxxxxxxxxxxxxxxxxxxxNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDITSITIEPGVEVEVTIADS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9STY6	122	40S ribosomal protein S20	yes	no	1.0	0.967	0.901	1e-56
P49200	124	40S ribosomal protein S20	yes	no	0.991	0.943	0.900	6e-56
P35686	128	40S ribosomal protein S20	no	no	0.991	0.914	0.795	3e-48
P60868	119	40S ribosomal protein S20	yes	no	0.966	0.957	0.669	7e-39
P60867	119	40S ribosomal protein S20	yes	no	0.966	0.957	0.669	7e-39
Q4R5D0	119	40S ribosomal protein S20	N/A	no	0.966	0.957	0.669	7e-39
P60866	119	40S ribosomal protein S20	yes	no	0.966	0.957	0.669	7e-39
Q3ZBH8	119	40S ribosomal protein S20	yes	no	0.966	0.957	0.669	7e-39
P23403	119	40S ribosomal protein S20	N/A	no	0.838	0.831	0.728	1e-38
Q5R924	119	40S ribosomal protein S20	yes	no	0.966	0.957	0.661	5e-38

>sp|Q9STY6|RS202_ARATH 40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1

 Score =  217 bits (553), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/122 (90%), Positives = 111/122 (90%), Gaps = 4/122 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 117 DS 118
           DS
Sbjct: 121 DS 122

Arabidopsis thaliana (taxid: 3702)

>sp|P49200|RS201_ARATH 40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2

 Score =  215 bits (548), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 109/121 (90%), Positives = 110/121 (90%), Gaps = 4/121 (3%)

Query: 2   AYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

Query: 118 S 118
           S
Sbjct: 124 S 124

Arabidopsis thaliana (taxid: 3702)

>sp|P35686|RS20_ORYSJ 40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 105/122 (86%), Gaps = 5/122 (4%)

Query: 1   MAYAA-MKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 59
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 60  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS D    ITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 116 AD 117
           +D
Sbjct: 126 SD 127

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P60868|RS20_RAT 40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1

 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Rattus norvegicus (taxid: 10116)

>sp|P60867|RS20_MOUSE 40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1

 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Mus musculus (taxid: 10090)

>sp|Q4R5D0|RS20_MACFA 40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1

 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Macaca fascicularis (taxid: 9541)

>sp|P60866|RS20_HUMAN 40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1

 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Homo sapiens (taxid: 9606)

>sp|Q3ZBH8|RS20_BOVIN 40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1

 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Bos taurus (taxid: 9913)

>sp|P23403|RS20_XENLA 40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 91/103 (88%), Gaps = 4/103 (3%)

Query: 20  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT 79
           IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ T
Sbjct: 17  IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKT 76

Query: 80  WDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
           WDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 77  WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Xenopus laevis (taxid: 8355)

>sp|Q5R924|RS20_PONAB 40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITT K+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTGKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
225455513	122	PREDICTED: 40S ribosomal protein S20-2 i	1.0	0.967	0.942	8e-59
449451803	121	PREDICTED: 40S ribosomal protein S20-2-l	0.991	0.966	0.933	5e-58
356544952	122	PREDICTED: 40S ribosomal protein S20-2-l	1.0	0.967	0.918	6e-58
357509855	122	40S ribosomal protein S20-2 [Medicago tr	1.0	0.967	0.909	1e-57
357470585	122	40S ribosomal protein S20-2 [Medicago tr	1.0	0.967	0.901	1e-57
356504833	123	PREDICTED: 40S ribosomal protein S20-1-l	0.983	0.943	0.925	2e-57
449460798	122	PREDICTED: 40S ribosomal protein S20-2-l	1.0	0.967	0.918	5e-57
351725473	123	uncharacterized protein LOC100306473 [Gl	0.983	0.943	0.908	1e-56
351723425	123	uncharacterized protein LOC100500179 [Gl	0.983	0.943	0.916	1e-56
255539715	124	40S ribosomal protein S20, putative [Ric	0.991	0.943	0.917	1e-56

>gi|225455513|ref|XP_002265347.1| PREDICTED: 40S ribosomal protein S20-2 isoform 1 [Vitis vinifera] gi|359490182|ref|XP_003634047.1| PREDICTED: 40S ribosomal protein S20-2 isoform 2 [Vitis vinifera] gi|147777804|emb|CAN62522.1| hypothetical protein VITISV_002374 [Vitis vinifera]

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/122 (94%), Positives = 115/122 (94%), Gaps = 4/122 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEE QE IHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEAIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 117 DS 118
           DS
Sbjct: 121 DS 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451803|ref|XP_004143650.1| PREDICTED: 40S ribosomal protein S20-2-like [Cucumis sativus] gi|449488600|ref|XP_004158106.1| PREDICTED: 40S ribosomal protein S20-2-like [Cucumis sativus]

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/121 (93%), Positives = 115/121 (95%), Gaps = 4/121 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+AQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS D    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 117 D 117
           D
Sbjct: 121 D 121

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544952|ref|XP_003540910.1| PREDICTED: 40S ribosomal protein S20-2-like [Glycine max] gi|356554377|ref|XP_003545523.1| PREDICTED: 40S ribosomal protein S20-2-like [Glycine max]

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/122 (91%), Positives = 116/122 (95%), Gaps = 4/122 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEE+QEQIHKIRITLSSKNVKNLEKVC DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDL+SSPD    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 117 DS 118
           D+
Sbjct: 121 DA 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509855|ref|XP_003625216.1| 40S ribosomal protein S20-2 [Medicago truncatula] gi|124360667|gb|ABN08656.1| Ribosomal protein S10, eukaryotic and archaeal form [Medicago truncatula] gi|355500231|gb|AES81434.1| 40S ribosomal protein S20-2 [Medicago truncatula]

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/122 (90%), Positives = 116/122 (95%), Gaps = 4/122 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEE+QEQIHKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVLHITTRK+PCGEGTNTWDRFELRVHKRVIDL+SSPD    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 117 DS 118
           D+
Sbjct: 121 DA 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470585|ref|XP_003605577.1| 40S ribosomal protein S20-2 [Medicago truncatula] gi|355506632|gb|AES87774.1| 40S ribosomal protein S20-2 [Medicago truncatula] gi|388508260|gb|AFK42196.1| unknown [Medicago truncatula]

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/122 (90%), Positives = 117/122 (95%), Gaps = 4/122 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEE+QEQIHKIRITLSSK+V+NLEKVC+DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVQNLEKVCSDLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVLHITTRK+PCGEGTNTWDRFELRVHKRVIDL+SSPD    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 117 DS 118
           D+
Sbjct: 121 DA 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504833|ref|XP_003521199.1| PREDICTED: 40S ribosomal protein S20-1-like [Glycine max]

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/120 (92%), Positives = 115/120 (95%), Gaps = 4/120 (3%)

Query: 3   YAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62
           YAAMKPTKPGLEE+QEQIHKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMPTK
Sbjct: 4   YAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTK 63

Query: 63  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
           VLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SSPD    ITSITIEPGVEVEVTIAD+
Sbjct: 64  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460798|ref|XP_004148131.1| PREDICTED: 40S ribosomal protein S20-2-like isoform 1 [Cucumis sativus] gi|449460800|ref|XP_004148132.1| PREDICTED: 40S ribosomal protein S20-2-like isoform 2 [Cucumis sativus] gi|449528601|ref|XP_004171292.1| PREDICTED: 40S ribosomal protein S20-2-like isoform 1 [Cucumis sativus] gi|449528603|ref|XP_004171293.1| PREDICTED: 40S ribosomal protein S20-2-like isoform 2 [Cucumis sativus]

 Score =  224 bits (571), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 112/122 (91%), Positives = 113/122 (92%), Gaps = 4/122 (3%)

Query: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+ QEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS D    ITSITIEPGVEVEVTIA
Sbjct: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 117 DS 118
           D 
Sbjct: 121 DQ 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725473|ref|NP_001235558.1| uncharacterized protein LOC100306473 [Glycine max] gi|255628657|gb|ACU14673.1| unknown [Glycine max]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/120 (90%), Positives = 114/120 (95%), Gaps = 4/120 (3%)

Query: 3   YAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62
           YAAMKPTKPGLEE+QEQ+HKIRITLSSK+VKNLEKVC DLVRGA DKRLRVKGPVRMPTK
Sbjct: 4   YAAMKPTKPGLEESQEQVHKIRITLSSKHVKNLEKVCADLVRGATDKRLRVKGPVRMPTK 63

Query: 63  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
           VLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SSPD    ITSITIEPGVEVEVTIAD+
Sbjct: 64  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723425|ref|NP_001238046.1| uncharacterized protein LOC100500179 [Glycine max] gi|255629581|gb|ACU15138.1| unknown [Glycine max]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 114/120 (95%), Gaps = 4/120 (3%)

Query: 3   YAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62
           YAAMKP KPGLEE+QEQIHKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMPTK
Sbjct: 4   YAAMKPNKPGLEESQEQIHKIRITLSSKHVKNLEKVCGDLVRGAKDKRLRVKGPVRMPTK 63

Query: 63  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
           VLHITTRKSPCGEGTNTWDRFELRVHKRVIDL+SSPD    ITSITIEPGVEVEVTIAD+
Sbjct: 64  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539715|ref|XP_002510922.1| 40S ribosomal protein S20, putative [Ricinus communis] gi|223550037|gb|EEF51524.1| 40S ribosomal protein S20, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/121 (91%), Positives = 112/121 (92%), Gaps = 4/121 (3%)

Query: 2   AYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
           AY AMKP K GLEE+ EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYGAMKPAKAGLEESPEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117
           KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIAD
Sbjct: 64  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

Query: 118 S 118
           S
Sbjct: 124 S 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2099535	122	AT3G47370 [Arabidopsis thalian	1.0	0.967	0.901	2.7e-52
TAIR|locus:2075949	124	AT3G45030 [Arabidopsis thalian	0.991	0.943	0.900	1.2e-51
TAIR|locus:2167938	124	AT5G62300 [Arabidopsis thalian	0.991	0.943	0.900	1.2e-51
ZFIN|ZDB-GENE-040426-2284	119	rps20 "ribosomal protein S20"	0.966	0.957	0.677	4.3e-38
UNIPROTKB|Q3ZBH8	119	RPS20 "40S ribosomal protein S	0.966	0.957	0.669	1.9e-37
UNIPROTKB|J9P9Z7	119	RPS20 "Uncharacterized protein	0.966	0.957	0.669	1.9e-37
UNIPROTKB|P60866	119	RPS20 "40S ribosomal protein S	0.966	0.957	0.669	1.9e-37
UNIPROTKB|F2Z539	119	RPS20 "40S ribosomal protein S	0.966	0.957	0.669	1.9e-37
MGI|MGI:1914677	119	Rps20 "ribosomal protein S20"	0.966	0.957	0.669	1.9e-37
RGD|621037	119	Rps20 "ribosomal protein S20"	0.966	0.957	0.669	1.9e-37

TAIR|locus:2099535 AT3G47370 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 110/122 (90%), Positives = 111/122 (90%)

Query:     1 MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
             MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct:     1 MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query:    61 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIA 116
             TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIA
Sbjct:    61 TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query:   117 DS 118
             DS
Sbjct:   121 DS 122

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2075949 AT3G45030 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 109/121 (90%), Positives = 110/121 (90%)

Query:     2 AYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
             AY  MKP K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT
Sbjct:     4 AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query:    62 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117
             KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIAD
Sbjct:    64 KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

Query:   118 S 118
             S
Sbjct:   124 S 124

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2167938 AT5G62300 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 109/121 (90%), Positives = 110/121 (90%)

Query:     2 AYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
             AY  MKP K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT
Sbjct:     4 AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query:    62 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117
             KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPD    ITSITIEPGVEVEVTIAD
Sbjct:    64 KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

Query:   118 S 118
             S
Sbjct:   124 S 124

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

ZFIN|ZDB-GENE-040426-2284 rps20 "ribosomal protein S20" [Danio rerio (taxid:7955)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     EA+  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKAPVEAEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKSLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

UNIPROTKB|Q3ZBH8 RPS20 "40S ribosomal protein S20" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/118 (66%), Positives = 96/118 (81%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J9P9Z7 RPS20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/118 (66%), Positives = 96/118 (81%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|P60866 RPS20 "40S ribosomal protein S20" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/118 (66%), Positives = 96/118 (81%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0003735 "structural constituent of ribosome" evidence=NAS;IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0003723 "RNA binding" evidence=NAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z539 RPS20 "40S ribosomal protein S20" [Sus scrofa (taxid:9823)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/118 (66%), Positives = 96/118 (81%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:1914677 Rps20 "ribosomal protein S20" [Mus musculus (taxid:10090)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/118 (66%), Positives = 96/118 (81%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621037 Rps20 "ribosomal protein S20" [Rattus norvegicus (taxid:10116)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/118 (66%), Positives = 96/118 (81%)

Query:     5 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
             A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct:     2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query:    65 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDI----TSITIEPGVEVEVTIADS 118
              ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +I    TSI+IEPGVEVEVTIAD+
Sbjct:    62 RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R924	RS20_PONAB	No assigned EC number	0.6610	0.9661	0.9579	yes	no
P35686	RS20_ORYSJ	No assigned EC number	0.7950	0.9915	0.9140	no	no
P49200	RS201_ARATH	No assigned EC number	0.9008	0.9915	0.9435	yes	no
P28079	RS10_THEAC	No assigned EC number	0.3939	0.8050	0.9134	yes	no
Q4R5D0	RS20_MACFA	No assigned EC number	0.6694	0.9661	0.9579	N/A	no
P14039	RS10_METVS	No assigned EC number	0.39	0.8135	0.9411	yes	no
A6UV42	RS10_META3	No assigned EC number	0.39	0.8135	0.9411	yes	no
Q5JFZ5	RS10_PYRKO	No assigned EC number	0.5066	0.6355	0.7352	yes	no
P23403	RS20_XENLA	No assigned EC number	0.7281	0.8389	0.8319	N/A	no
Q54Y41	RS20_DICDI	No assigned EC number	0.5701	0.9237	0.8790	yes	no
C5A5P5	RS10_THEGJ	No assigned EC number	0.52	0.6355	0.7352	yes	no
Q3ZBH8	RS20_BOVIN	No assigned EC number	0.6694	0.9661	0.9579	yes	no
Q3IUD7	RS10_NATPD	No assigned EC number	0.3529	0.8305	0.9607	yes	no
A0B7D7	RS10_METTP	No assigned EC number	0.3960	0.8050	0.9313	yes	no
Q979T2	RS10_THEVO	No assigned EC number	0.4040	0.8050	0.9134	yes	no
O74893	RS20_SCHPO	No assigned EC number	0.6862	0.8305	0.8305	yes	no
B0R8C2	RS10_HALS3	No assigned EC number	0.3431	0.8305	0.9607	yes	no
Q6L201	RS10_PICTO	No assigned EC number	0.41	0.8135	0.9320	yes	no
B6YVG1	RS10_THEON	No assigned EC number	0.52	0.6355	0.7352	yes	no
P60868	RS20_RAT	No assigned EC number	0.6694	0.9661	0.9579	yes	no
P23357	RS10_HALMA	No assigned EC number	0.3465	0.8220	0.9417	yes	no
P38701	RS20_YEAST	No assigned EC number	0.5454	0.8050	0.7851	yes	no
P55828	RS20_DROME	No assigned EC number	0.6198	0.9830	0.9666	yes	no
Q9STY6	RS202_ARATH	No assigned EC number	0.9016	1.0	0.9672	yes	no
A1XQU9	RS20_PIG	No assigned EC number	0.6944	0.8813	0.8739	yes	no
P60866	RS20_HUMAN	No assigned EC number	0.6694	0.9661	0.9579	yes	no
P60867	RS20_MOUSE	No assigned EC number	0.6694	0.9661	0.9579	yes	no
P48854	RS10_HALSA	No assigned EC number	0.3431	0.8305	0.9607	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XV1007	SubName- Full=Putative uncharacterized protein; (123 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.16155.2.1	Predicted protein (206 aa)	•				•		•		0.668
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)	•			•	•	•			0.567
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)	•			•	•	•			0.561
	fgenesh4_pm.C_LG_XIII000297	hypothetical protein (222 aa)	•						•		0.532
	rpl22	50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)	•						•		0.502
	eugene3.00190574	SubName- Full=Putative uncharacterized protein; (132 aa)				•	•	•			0.499
	estExt_Genewise1_v1.C_LG_XIII3119	SubName- Full=Putative uncharacterized protein; (131 aa)				•	•	•			0.499
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)	•						•		0.467
	eugene3.00141000	hypothetical protein (227 aa)	•						•		0.467
	fgenesh4_pg.C_scaffold_166000032	hypothetical protein (285 aa)	•			•			•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
PTZ00039	115	PTZ00039, PTZ00039, 40S ribosomal protein S20; Pro	2e-54
TIGR01046	99	TIGR01046, S10_Arc_S20_Euk, ribosomal protein S10(	2e-36
pfam00338	97	pfam00338, Ribosomal_S10, Ribosomal protein S10p/S	3e-32
COG0051	104	COG0051, RpsJ, Ribosomal protein S10 [Translation,	9e-28
PRK12271	102	PRK12271, rps10p, 30S ribosomal protein S10P; Revi	4e-24
CHL00135	101	CHL00135, rps10, ribosomal protein S10; Validated	2e-11
TIGR01049	99	TIGR01049, rpsJ_bact, ribosomal protein S10, bacte	1e-08
PRK00596	102	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewe	5e-08

>gnl|CDD|173336 PTZ00039, PTZ00039, 40S ribosomal protein S20; Provisional

 Score =  165 bits (419), Expect = 2e-54
 Identities = 78/113 (69%), Positives = 93/113 (82%), Gaps = 4/113 (3%)

Query: 7   KPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHI 66
           K  K G EE Q ++HKIRITL+SKN+K++EKVC D++ GAK+K L+V GPVRMP K L I
Sbjct: 3   KIKKGGEEEEQNRLHKIRITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTLRI 62

Query: 67  TTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
           TTRKSPCGEGTNTWDRFE+R++KRVIDL+SS D    ITSI I+PGVEVEV I
Sbjct: 63  TTRKSPCGEGTNTWDRFEMRIYKRVIDLYSSSDVVTQITSINIDPGVEVEVII 115

Length = 115

>gnl|CDD|130118 TIGR01046, S10_Arc_S20_Euk, ribosomal protein S10(archaeal)/S20(eukaryotic)

 Score =  119 bits (300), Expect = 2e-36
 Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 4/99 (4%)

Query: 21  HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
           HK RI L+S NV++LEKVC  + R A+   +R+ GPV +PTK L + TRKSP GEG+ TW
Sbjct: 1   HKARIKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGSKTW 60

Query: 81  DRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
           DR+E+R+HKR+ID+ +       I  I++   VE+E+T+
Sbjct: 61  DRWEMRIHKRLIDIEADERALRQIMRISVPEDVEIEITL 99

This model describes the archaeal ribosomal protein and its equivalents in eukaryotes [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 99

>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e

 Score =  108 bits (272), Expect = 3e-32
 Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 6/98 (6%)

Query: 23  IRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDR 82
           IRI L S + K LE     +V  AK   ++V GP+ +PTK L +T  +SP  +   + ++
Sbjct: 1   IRIKLKSYDHKLLESYVKFIVEAAKRLGIKVSGPIPLPTKRLRVTVLRSPHVD-KKSREQ 59

Query: 83  FELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
           FE+R HKR+ID++ +       +  I +  GV+VE+ +
Sbjct: 60  FEMRTHKRLIDIYDATPETVDQLLRIDLPEGVDVEIKL 97

This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Length = 97

>gnl|CDD|223129 COG0051, RpsJ, Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]

 Score = 97.3 bits (243), Expect = 9e-28
 Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 21  HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
            KIRI L S + + L++VC ++V  AK     VKGP+ +PTK   +T  +SP GE   + 
Sbjct: 4   QKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEKD-SR 62

Query: 81  DRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTIAD 117
           ++FE+R HKR+ID+          +  + +  GV+VE+ +  
Sbjct: 63  EQFEMRTHKRLIDIVDPTPKTVDALMRLDLPAGVDVEIKLES 104

Length = 104

>gnl|CDD|183392 PRK12271, rps10p, 30S ribosomal protein S10P; Reviewed

 Score = 88.1 bits (219), Expect = 4e-24
 Identities = 36/74 (48%), Positives = 52/74 (70%)

Query: 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
           K RI LSS N ++L++VC  +   A+   + + GP+ +PTK L + TRKSP GEGT TW
Sbjct: 2  QKARIRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATW 61

Query: 81 DRFELRVHKRVIDL 94
          D +E+R+HKR+ID+
Sbjct: 62 DHWEMRIHKRLIDI 75

Length = 102

>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated

 Score = 55.8 bits (135), Expect = 2e-11
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 19  QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTN 78
              KIRI L S N + L   C  ++  A        GP+ +PTK       +SP     +
Sbjct: 5   TNAKIRIKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSP---HVD 61

Query: 79  TWDR--FELRVHKRVIDLFSSPD-----ITSITIEPGVEV 111
              R  FE+R HKR+ID++         +  + + PGV++
Sbjct: 62  KDSREHFEIRTHKRIIDIYYPSSETIDSLMKLDLPPGVDI 101

Length = 101

>gnl|CDD|130121 TIGR01049, rpsJ_bact, ribosomal protein S10, bacterial/organelle

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 12/102 (11%)

Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L S + + L++    +V  AK    +VKGP+ +PTK    T  +SP     +  +
Sbjct: 2   KIRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSR-E 60

Query: 82  RFELRVHKRVIDLFSSPDITSITIE--------PGVEVEVTI 115
           +FE+R HKR+ID+    D    TI+         GV++E+ +
Sbjct: 61  QFEIRTHKRLIDII---DPNPKTIDALMKLDLPAGVDIEIKL 99

This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 99

>gnl|CDD|179076 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 16/102 (15%)

Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L + + + L++    +V  AK    +V+GP+ +PTK    T  +SP     N   
Sbjct: 5   KIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSP---HVNKDS 61

Query: 82  R--FELRVHKRVIDLFSSPDITSITIE--------PGVEVEV 113
           R  FE+R HKR+ID+    D T  T++         GV+VE+
Sbjct: 62  REQFEIRTHKRLIDI---VDPTPKTVDALMKLDLPAGVDVEI 100

Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PTZ00039	115	40S ribosomal protein S20; Provisional	100.0
COG0051	104	RpsJ Ribosomal protein S10 [Translation, ribosomal	100.0
PRK12271	102	rps10p 30S ribosomal protein S10P; Reviewed	100.0
TIGR01046	99	S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S2	100.0
PRK00596	102	rpsJ 30S ribosomal protein S10; Reviewed	100.0
CHL00135	101	rps10 ribosomal protein S10; Validated	100.0
TIGR01049	99	rpsJ_bact ribosomal protein S10, bacterial/organel	100.0
PF00338	97	Ribosomal_S10: Ribosomal protein S10p/S20e; InterP	100.0
KOG3321	175	consensus Mitochondrial ribosomal protein S10 [Tra	99.9
KOG0900	121	consensus 40S ribosomal protein S20 [Translation,	99.89
KOG4060	176	consensus Uncharacterized conserved protein [Funct	98.59

>PTZ00039 40S ribosomal protein S20; Provisional

Probab=100.00  E-value=3.9e-41  Score=237.79  Aligned_cols=107  Identities=72%  Similarity=1.156  Sum_probs=99.2

Q ss_pred             CCCCccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEE
Q 033482            9 TKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVH   88 (118)
Q Consensus         9 ~~~~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~h   88 (118)
                      +|-+.++..+++++++|+|+|||+..||.+|++|.+.|++.|+.++||+||||++.+||+||||||+||+||||||+|+|
T Consensus         5 ~~~~~~~~~~~~~kirI~L~S~d~~~Ld~~~~~Ii~~ak~~g~~v~GPipLPtK~~~~tvlrSPhg~~kksreqfE~RiH   84 (115)
T PTZ00039          5 KKGGEEEEQNRLHKIRITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTLRITTRKSPCGEGTNTWDRFEMRIY   84 (115)
T ss_pred             ccccchhhhheeeEEEEEEEECCHHHHHHHHHHHHHHHHHcCCEeECCccCCceeEEEEeeeCCCCCCCchHHHheeeee
Confidence            33355566678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCC----ceeeecCCCcEEEEEE
Q 033482           89 KRVIDLFSSPD----ITSITIEPGVEVEVTI  115 (118)
Q Consensus        89 kR~i~I~~~~~----l~~~~lP~gV~iev~l  115 (118)
                      ||+|+|.++++    |+++++|+||+|||.+
T Consensus        85 KRlIdI~~~~~~v~~l~~~~lp~GV~Iei~~  115 (115)
T PTZ00039         85 KRVIDLYSSSDVVTQITSINIDPGVEVEVII  115 (115)
T ss_pred             eEEEEEeCCHHHHHHHhCCCCCCCcEEEEeC
Confidence            99999998755    8999999999999974

>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-40  Score=229.30  Aligned_cols=98  Identities=37%  Similarity=0.663  Sum_probs=93.5

Q ss_pred             cceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCC
Q 033482           18 EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS   97 (118)
Q Consensus        18 ~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~   97 (118)
                      |..++++|+|+|||+..||.+|.+|+++|+.+|+.++||+||||++.+||+|||||||| +||||||||+|||+|+|.+.
T Consensus         1 m~~~kirI~L~s~d~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~k-~s~e~fEmr~HkRlidi~~~   79 (104)
T COG0051           1 MKKQKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEK-DSREQFEMRTHKRLIDIVDP   79 (104)
T ss_pred             CCCceEEEEEecCCHHHHHHHHHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCCC-chHHHhhhheeeeEEEeecC
Confidence            35679999999999999999999999999999999999999999999999999999995 69999999999999999988


Q ss_pred             CC-----ceeeecCCCcEEEEEEe
Q 033482           98 PD-----ITSITIEPGVEVEVTIA  116 (118)
Q Consensus        98 ~~-----l~~~~lP~gV~iev~l~  116 (118)
                      ++     ||++++|+||+||+++.
T Consensus        80 ~~~~~~~Lm~i~~p~gV~vei~~~  103 (104)
T COG0051          80 TPKTVDALMRLDLPAGVDVEIKLE  103 (104)
T ss_pred             CHHHHHHHhcccCCCCceEEEEEc
Confidence            77     99999999999999975

>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed

Probab=100.00  E-value=6e-40  Score=227.59  Aligned_cols=96  Identities=41%  Similarity=0.739  Sum_probs=91.8

Q ss_pred             eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC-
Q 033482           21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD-   99 (118)
Q Consensus        21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~-   99 (118)
                      ++++|+|+|||+..||.+|++|.+.++..|+.++||+||||++.+||+||||||+||+||||||+|+|||+|+|.++++ 
T Consensus         2 ~~irI~L~S~d~~~Ld~~~~~I~~~~k~~g~~~~GPipLPtk~~~~tv~rSPh~~gk~sreqfE~r~hKRlidi~~~~~~   81 (102)
T PRK12271          2 QKARIRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATWDHWEMRIHKRLIDIDADERA   81 (102)
T ss_pred             ceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEECCCcCCceeEEEEeeeCCCCCCCcchHHeEEEEeEEEEEeeCCHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999966555 


Q ss_pred             ---ceeeecCCCcEEEEEEe
Q 033482          100 ---ITSITIEPGVEVEVTIA  116 (118)
Q Consensus       100 ---l~~~~lP~gV~iev~l~  116 (118)
                         |+++++|+||+|+|++.
T Consensus        82 ~~~l~~~~lp~gV~iei~~~  101 (102)
T PRK12271         82 LRQLMRIRVPEDVQIEIELI  101 (102)
T ss_pred             HHHHhCCCCCCCcEEEEEEc
Confidence               89999999999999975

>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic)

Probab=100.00  E-value=9.9e-40  Score=225.39  Aligned_cols=95  Identities=51%  Similarity=0.882  Sum_probs=91.1

Q ss_pred             eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC-
Q 033482           21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD-   99 (118)
Q Consensus        21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~-   99 (118)
                      ++++|+|+|||+..||.+|++|.+.|++.|+.++||+||||++.+||++|||||+|++||||||+|+|||+|+|.++++ 
T Consensus         1 ~~irI~L~S~d~~~Ld~~~~~I~~~ak~~g~~~~GPipLPtk~~~~tv~rsPh~~~~ks~e~fE~r~hKRlidi~~~~~~   80 (99)
T TIGR01046         1 HKARIKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGSKTWDRWEMRIHKRLIDIEADERA   80 (99)
T ss_pred             CcEEEEEEECCHHHHHHHHHHHHHHHHHcCCEEECCccCCcceEEEEeeeCCCCCCCcchHheEEEEEEEEEEEECCHHH
Confidence            3699999999999999999999999999999999999999999999999999999889999999999999999998865 


Q ss_pred             ---ceeeecCCCcEEEEEE
Q 033482          100 ---ITSITIEPGVEVEVTI  115 (118)
Q Consensus       100 ---l~~~~lP~gV~iev~l  115 (118)
                         |+++++|+||+||+++
T Consensus        81 ~~~l~~~~lp~gV~vei~~   99 (99)
T TIGR01046        81 LRQIMRISVPEDVEIEITL   99 (99)
T ss_pred             HHHHhCCCCCCCcEEEEEC
Confidence               8999999999999975

its equivalents in eukaryotes.

>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed

Probab=100.00  E-value=3.5e-39  Score=223.45  Aligned_cols=97  Identities=31%  Similarity=0.561  Sum_probs=92.7

Q ss_pred             cceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCC
Q 033482           18 EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS   97 (118)
Q Consensus        18 ~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~   97 (118)
                      +.+++++|+|+|||+..||++|.+|.++|+.+|+.++||+||||++++||+||||||| |+||||||+|+|+|+|+|++.
T Consensus         1 ~~~~~irI~l~S~d~~~L~~~~~~i~~~a~~~~i~v~GpipLPtk~~r~tvlrSPhv~-KksreqfE~r~hkR~i~i~~~   79 (102)
T PRK00596          1 MAKQKIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVN-KDSREQFEIRTHKRLIDIVDP   79 (102)
T ss_pred             CCCcEEEEEEEECCHHHHHHHHHHHHHHHHHcCCeEECCcCCCcEEEEEEEeeCCCCC-CCHHHHhhhhhheEEEEEECC
Confidence            3567999999999999999999999999999999999999999999999999999999 899999999999999999988


Q ss_pred             CC-----ceeeecCCCcEEEEEE
Q 033482           98 PD-----ITSITIEPGVEVEVTI  115 (118)
Q Consensus        98 ~~-----l~~~~lP~gV~iev~l  115 (118)
                      ++     |+++++|+||+|+|++
T Consensus        80 ~~~~~~~l~~~~lp~gV~iev~~  102 (102)
T PRK00596         80 TPKTVDALMKLDLPAGVDVEIKL  102 (102)
T ss_pred             CHHHHHHHhcCCCCCCcEEEEEC
Confidence            85     8899999999999974

>CHL00135 rps10 ribosomal protein S10; Validated

Probab=100.00  E-value=1.4e-38  Score=220.38  Aligned_cols=94  Identities=30%  Similarity=0.541  Sum_probs=90.0

Q ss_pred             ccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeC
Q 033482           17 QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFS   96 (118)
Q Consensus        17 ~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~   96 (118)
                      .|..++++|+|+|||+..||++|++|.++|+.+|+.++||+||||++++|||||||||| ||||||||+|+|||+|+|.+
T Consensus         3 ~~~~~kirI~LkS~d~~~L~~~~~~I~~~~k~~~~~~~GpipLPtk~~~~TvlrSPhv~-KkSrEqfE~r~hKRlI~i~~   81 (101)
T CHL00135          3 IMTNAKIRIKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVD-KDSREHFEIRTHKRIIDIYY   81 (101)
T ss_pred             CCccCeEEEEEEECCHHHHHHHHHHHHHHHHHcCCeEeCCcCCCcEEEEEEEecCCCCC-CchHHhhhheeeeEEEEEeC
Confidence            46678999999999999999999999999999999999999999999999999999999 89999999999999999998


Q ss_pred             CCC-----ceeeecCCCcEE
Q 033482           97 SPD-----ITSITIEPGVEV  111 (118)
Q Consensus        97 ~~~-----l~~~~lP~gV~i  111 (118)
                      .++     |+++++|+||+|
T Consensus        82 ~~~~~i~~l~~~~lp~gV~i  101 (101)
T CHL00135         82 PSSETIDSLMKLDLPPGVDI  101 (101)
T ss_pred             CCHHHHHHHHcCCCCCCCcC
Confidence            885     899999999985

>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle

Probab=100.00  E-value=3e-38  Score=217.61  Aligned_cols=93  Identities=33%  Similarity=0.591  Sum_probs=89.8

Q ss_pred             eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC-
Q 033482           21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD-   99 (118)
Q Consensus        21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~-   99 (118)
                      ++++|+|+|||+..||.+|++|.++|+.+|+.++||+||||++.+||+||||||| ||||||||+|+|+|+|+|++.++ 
T Consensus         1 ~~irI~l~s~d~~~L~~~~~~i~~~a~~~gi~~~gpi~LPtk~~~~tvlrSPhv~-kksreqfE~r~hkR~i~i~~~~~~   79 (99)
T TIGR01049         1 QKIRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVN-KDSREQFEIRTHKRLIDIIDPNPK   79 (99)
T ss_pred             CeEEEEEEECCHHHHHHHHHHHHHHHHHcCCceecccCCCCEEEEEEEeeCCCCC-CCHHHHhhhhhheEEEEEeCCCHH
Confidence            4799999999999999999999999999999999999999999999999999999 79999999999999999998886 


Q ss_pred             ----ceeeecCCCcEEEEE
Q 033482          100 ----ITSITIEPGVEVEVT  114 (118)
Q Consensus       100 ----l~~~~lP~gV~iev~  114 (118)
                          ++++++|+||+|+|+
T Consensus        80 ~~~~l~~~~lp~gV~iei~   98 (99)
T TIGR01049        80 TIDALMKLDLPAGVDIEIK   98 (99)
T ss_pred             HHHHHHcCCCCCCcEEEEE
Confidence                889999999999986

This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.

>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-33  Score=191.55  Aligned_cols=92  Identities=34%  Similarity=0.532  Sum_probs=87.3

Q ss_pred             EEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC---
Q 033482           23 IRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD---   99 (118)
Q Consensus        23 i~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~---   99 (118)
                      ++|+|+|||+..||.+|.+|.++|+.+|+.++||++|||++.+||+||||||| |+||||||+++|+|.|+|.+.+.   
T Consensus         1 i~I~l~s~d~~~l~~~~~~i~~~~~~~~~~~~~~~~lPtk~~~~tvlrSPhv~-kks~eqfe~~~~kr~i~i~~~~~~~~   79 (97)
T PF00338_consen    1 IRIKLKSYDKKLLESYVKFIHKLAKNLGIKVSGPIPLPTKKKRFTVLRSPHVD-KKSREQFEIRTHKRLIQIKNLNSELA   79 (97)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHCTSSCEEEEEEEEEEEEEEEEESSSSSS-TTSEEEEEEEEEEEEEEESSSSHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCccEEEEEEeecCcCC-cchhhheeeeeeEEEEEEeCCCHHHH
Confidence            68999999999999999999999999999999999999999999999999999 99999999999999999976665   


Q ss_pred             --ceeeecCCCcEEEEEE
Q 033482          100 --ITSITIEPGVEVEVTI  115 (118)
Q Consensus       100 --l~~~~lP~gV~iev~l  115 (118)
                        ++.+++|+||+|+|++
T Consensus        80 ~~~l~~~~p~gV~i~i~i   97 (97)
T PF00338_consen   80 DKLLYIQLPEGVQIEIKI   97 (97)
T ss_dssp             HHHHHSSTSSSSEEEEEE
T ss_pred             HHHhCcCCCCCCEEEEEC
Confidence              5578889999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....

>KOG3321 consensus Mitochondrial ribosomal protein S10 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.8e-26  Score=170.65  Aligned_cols=98  Identities=22%  Similarity=0.333  Sum_probs=92.3

Q ss_pred             ccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeC
Q 033482           17 QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFS   96 (118)
Q Consensus        17 ~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~   96 (118)
                      ...+..+.|.++|+|..+||+|..||+++|+.+||.++||-|||+++++||+|||||++ |||++|||+|||.|+|++++
T Consensus        43 dkly~~~ai~lrg~D~avLdsYt~Fi~~ta~~LgIp~~~~~plp~~~Er~TlLrS~fIh-KK~k~~yE~rTH~R~i~l~~  121 (175)
T KOG3321|consen   43 DKLYSLVAIELRGHDKAVLDSYTDFICRTAYYLGIPIKGPEPLPKKRERWTLLRSPFIH-KKSKENYERRTHSRLIELYS  121 (175)
T ss_pred             hhhcceeeEEeccCchHHHHHHHHHHHHHHHHhCCccCCCCCCchhhhhhhhhhchhhh-hHHhhhHHHHHHHHHHHHhh
Confidence            34456788999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCC--------ceeeecCCCcEEEEEE
Q 033482           97 SPD--------ITSITIEPGVEVEVTI  115 (118)
Q Consensus        97 ~~~--------l~~~~lP~gV~iev~l  115 (118)
                      .++        +++.++|+||.|+++.
T Consensus       122 ~tgsTl~tfleYI~rn~pegV~mq~~~  148 (175)
T KOG3321|consen  122 VTGSTLDTFLEYIQRNLPEGVGMQAKF  148 (175)
T ss_pred             cCchHHHHHHHHHHhhChhhhcceece
Confidence            887        6889999999999875

>KOG0900 consensus 40S ribosomal protein S20 [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.2e-24  Score=154.11  Aligned_cols=103  Identities=75%  Similarity=1.194  Sum_probs=96.8

Q ss_pred             ccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEe
Q 033482           15 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL   94 (118)
Q Consensus        15 ~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I   94 (118)
                      ...++..+++|++.|.+...|+++|..|.+.|++.+++++||++|||+.+++|++|+||+.|++.|++|+||+|+|+|++
T Consensus        14 ~~~~~~~~~~it~~~~~~kslekvC~dl~~~ak~~nl~~kg~vr~Ptk~~~itt~k~p~g~g~k~w~~f~mRiH~R~idl   93 (121)
T KOG0900|consen   14 LSTPEIHKIRITLTSQKVKSLEKVCADLVRGAKEKNLKVKGPVRLPTKVLKITTRKTPCGEGSKTWDRFEMRVHKRLIDL   93 (121)
T ss_pred             cchhhhhccceeeeHHHHHHHHHHHHHHHHHHhhcCCcccCcccCCceeEEEEEeecCCcCCccHHHHHHHHHHHHHhcc
Confidence            45666678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCC----ceeeecCCCcEEEEEEec
Q 033482           95 FSSPD----ITSITIEPGVEVEVTIAD  117 (118)
Q Consensus        95 ~~~~~----l~~~~lP~gV~iev~l~~  117 (118)
                      ..++.    ++++.++|||++++.+.+
T Consensus        94 ~s~se~vkqitsi~~epgVevev~i~~  120 (121)
T KOG0900|consen   94 HSPSEIVKQITSISIEPGVEVEVTIAN  120 (121)
T ss_pred             CChHHHHHHhhhhccCCCceEEEEecc
Confidence            88887    778888999999999875

>KOG4060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=2.1e-07  Score=69.00  Aligned_cols=97  Identities=18%  Similarity=0.253  Sum_probs=86.1

Q ss_pred             ccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEe
Q 033482           15 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL   94 (118)
Q Consensus        15 ~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I   94 (118)
                      -...++..+.+++++||.-.|++|..++-.+|+.+++.+.--..+|+++..+-.|| |  +|+.+-..+.+.||-|.+.+
T Consensus        47 re~~ey~~lNV~i~gyD~~~lEsYq~yvH~la~~l~~~V~dsYA~p~qt~~v~~l~-p--~stv~ese~~ltTyeRvvql  123 (176)
T KOG4060|consen   47 REINEYGVLNVHITGYDMTLLESYQQYVHNLANSLSIKVEDSYAMPTQTIEVLQLQ-P--QSTVMESESVLTTYERVVQL  123 (176)
T ss_pred             hcccccceEEEEEEecccchHHHHHHHHHHHHHHcCceeEeeeccCccceeEEEec-C--Cceeeehhhhhhhhhheeee
Confidence            34457778999999999999999999999999999999999999999998877776 3  34677789999999999999


Q ss_pred             eCCCC--------ceeeecCCCcEEEEE
Q 033482           95 FSSPD--------ITSITIEPGVEVEVT  114 (118)
Q Consensus        95 ~~~~~--------l~~~~lP~gV~iev~  114 (118)
                      .+.+.        |++-.+|+||.+.|+
T Consensus       124 s~v~Ap~~~~Fl~iiqa~lPeGV~l~Vk  151 (176)
T KOG4060|consen  124 SGVSAPFAEIFLEIIQASLPEGVRLSVK  151 (176)
T ss_pred             cccCchhHHHHHHHHHHhCCcceEEEee
Confidence            98887        778899999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
3iz6_J	128	Localization Of The Small Subunit Ribosomal Protein		2e-49
2zkq_j	119	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-40
2xzm_J	120	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-28
1s1h_J	100	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		5e-25
3jyv_J	96	Structure Of The 40s Rrna And Proteins And PE TRNA		9e-25
3izb_J	121	Localization Of The Small Subunit Ribosomal Protein		1e-24
3zey_Q	117	High-resolution Cryo-electron Microscopy Structure		9e-22
3j20_L	102	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-16
3uxs_J	105	The Structure Of Thermorubin In Complex With The 70		1e-06
1fjg_J	105	Structure Of The Thermus Thermophilus 30s Ribosomal		2e-06
1i94_J	104	Crystal Structures Of The Small Ribosomal Subunit W		2e-06
1pns_J	98	Crystal Structure Of A Streptomycin Dependent Ribos		2e-06
3fic_J	99	T. Thermophilus 70s Ribosome In Complex With Mrna,		2e-06
3bbn_J	197	Homology Model For The Spinach Chloroplast 30s Subu		1e-05
1p6g_J	103	Real Space Refined Coordinates Of The 30s Subunit F		7e-05
3fih_J	98	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		2e-04
2gy9_J	96	Structure Of The 30s Subunit Of A Pre-Translocation		4e-04

>pdb|3IZ6|J Chain J, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 128

Iteration: 1
 Score =  189 bits (481), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 105/122 (86%), Gaps = 5/122 (4%)
Query: 1   MAYAA-MKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 59
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65
Query: 60  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS D    ITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125
Query: 116 AD 117
           +D
Sbjct: 126 SD 127

>pdb|2ZKQ|JJ Chain j, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 119

Iteration: 1
 Score =  159 bits (401), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)
Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61
Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

>pdb|2XZM|J Chain J, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 120

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 89/116 (76%), Gaps = 7/116 (6%)
Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLV-RGAKDKRLRVKGPVRMPTKV 63
           A K TK G EE ++   ++RITL+ KN+K++EK  +++V R  K +++ VKGPVRMPTK 
Sbjct: 3   ATKETKKGEEEVKK--VRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKT 60
Query: 64  LHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS-PDITSIT---IEPGVEVEVTI 115
           L IT RKSPCGEG+ TWDRFE+R++KR+IDL  + PD+ +IT   I+PGVE+E+T+
Sbjct: 61  LVITVRKSPCGEGSKTWDRFEMRIYKRIIDLTCNVPDVKTITNFRIDPGVEIELTM 116

>pdb|1S1H|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 100

Iteration: 1
 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 73/100 (73%), Gaps = 4/100 (4%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRITL+S  VK LE V +++V+ A+   L  KGPVR+PTKVL I+TRK+P GEG+ TW+
Sbjct: 1   KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWE 60
Query: 82  RFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117
            +E+R+HKR IDL +       IT ITIEPGV+VEV  ++
Sbjct: 61  TYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVASN 100

>pdb|3JYV|J Chain J, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 96

Iteration: 1
 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 71/96 (73%), Gaps = 4/96 (4%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRITL+S  VK LE V +++V+ A+   L  KGPVR+PTKVL I+TRK+P GEG+ TW+
Sbjct: 1   KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWE 60
Query: 82  RFELRVHKRVIDLFSSPD----ITSITIEPGVEVEV 113
            +E+R+HKR IDL +       IT ITIEPGV+VEV
Sbjct: 61  TYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEV 96

>pdb|3IZB|J Chain J, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 121

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 4/99 (4%)
Query: 24  RITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRF 83
           RITL+S  VK LE V +++V+ A+   L  KGPVR+PTKVL I+TRK+P GEG+ TW+ +
Sbjct: 23  RITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETY 82
Query: 84  ELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
           E+R+HKR IDL +       IT ITIEPGV+VEV +A +
Sbjct: 83  EMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVASN 121

>pdb|3ZEY|Q Chain Q, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 117

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 18  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGT 77
           ++  ++ + ++S+N K +E V T+L+  A+++++ ++GPVR+PT+ L +TTRK+PCG GT
Sbjct: 12  QETQRVLVKMTSRNAKAVENVMTELLLHARNEKVVLRGPVRLPTRTLKVTTRKTPCGNGT 71
Query: 78  NTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
           NTWD +EL+++KR+++L +  +    ITS  I+ GV+V +TI
Sbjct: 72  NTWDTYELKIYKRLVELRAPTELVKKITSFPIDAGVDVAITI 113

>pdb|3J20|L Chain L, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 102

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 57/75 (76%)
Query: 20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT 79
          + K RI ++S NV++L++V   + + A+   +R+ GP+ +PTK + ITTRKSP GEG+ T
Sbjct: 1  MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSAT 60
Query: 80 WDRFELRVHKRVIDL 94
          +DR+ELRVHKR+ID+
Sbjct: 61 FDRWELRVHKRLIDI 75

>pdb|3UXS|J Chain J, The Structure Of Thermorubin In Complex With The 70s Ribosome From Thermus Thermophilus. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 105

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 3   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 61
Query: 82  RFELRVHKRVIDLFSS-----PDITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 62  HFELRTHNRLVDILNPNRKTIEQLMTLDLPTGVEIEI 98

>pdb|1FJG|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 3   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 61
Query: 82  RFELRVHKRVIDLFSS-----PDITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 62  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEI 98

>pdb|1I94|J Chain J, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 2   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 60
Query: 82  RFELRVHKRVIDLFSS-----PDITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 61  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEI 97

>pdb|1PNS|J Chain J, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 98

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 1   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 59
Query: 82  RFELRVHKRVIDLFSS-----PDITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 60  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEI 96

>pdb|3FIC|J Chain J, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 99

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 1   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 59
Query: 82  RFELRVHKRVIDLFSS-----PDITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 60  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEI 96

>pdb|3BBN|J Chain J, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 21  HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
            KIRI L S  V  +E  C  ++  A+    +  GPV +PTK       KSP       +
Sbjct: 99  QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARF 158
Query: 81  DRFELRVHKRVIDLF-----SSPDITSITIEPGVEVEVTI 115
             FE+R H+R+ID+      +   +  + +  GV+VEV +
Sbjct: 159 -HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

>pdb|1P6G|J Chain J, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 103

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 19  QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTN 78
           Q  +IRI L + + + +++   ++V  AK    +V+GP+ +PT+    T   SP     +
Sbjct: 2   QNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISP-HVNKD 60
Query: 79  TWDRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTIA 116
             D++E+R H R++D+    +     +  + +  GV+V++++ 
Sbjct: 61  ARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG 103

>pdb|3FIH|J Chain J, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 98

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           +IRI L + + + +++   ++V  AK    +V+GP+ +PT+    T   SP     +  D
Sbjct: 1   RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISP-HVNKDARD 59
Query: 82  RFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
           ++E+R H R++D+    +     +  + +  GV+V++++
Sbjct: 60  QYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 98

>pdb|2GY9|J Chain J, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 96

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           +IRI L + + + +++   ++V  AK    +V+GP+ +PT+    T   SP     +  D
Sbjct: 1   RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISP-HVNKDARD 59
Query: 82  RFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEV 113
           ++E+R H R++D+    +     +  + +  GV+V++
Sbjct: 60  QYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQI 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
3iz6_J	128	40S ribosomal protein S20 (S10P); eukaryotic ribos	1e-41
2zkq_j	119	40S ribosomal protein S20E; protein-RNA complex, 4	2e-40
3u5c_U	121	40S ribosomal protein S20; translation, ribosome,	4e-38
2xzm_J	120	Ribosomal protein S10 containing protein; ribosome	3e-36
2vqe_J	105	30S ribosomal protein S10, 30S ribosomal protein S	6e-33
3r8n_J	98	30S ribosomal protein S10; protein biosynthesis, R	2e-31
3bbn_J	197	Ribosomal protein S10; small ribosomal subunit, sp	3e-31
3d3c_J	87	30S ribosomal protein S10, N utilization substance	4e-16
3r2c_J	83	Protein NUSE, 30S ribosomal protein S10; cross spe	6e-11

>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 128

 Score =  133 bits (335), Expect = 1e-41
 Identities = 97/122 (79%), Positives = 105/122 (86%), Gaps = 5/122 (4%)

Query: 1   MAYAA-MKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 59
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 60  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS D    ITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 116 AD 117
           +D
Sbjct: 126 SD 127

>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 119

 Score =  129 bits (326), Expect = 2e-40
 Identities = 79/118 (66%), Positives = 96/118 (81%), Gaps = 4/118 (3%)

Query: 5   AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  +    ITSI+IEPGVEVEVTIAD+
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119

>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J* Length = 121

 Score =  123 bits (311), Expect = 4e-38
 Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 4/117 (3%)

Query: 6   MKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLH 65
            K      E+ Q+QI KIRITL+S  VK LE V +++V+ A+   L  KGPVR+PTKVL 
Sbjct: 5   QKEKVEEQEQQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLK 64

Query: 66  ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIADS 118
           I+TRK+P GEG+ TW+ +E+R+HKR IDL +       IT ITIEPGV+VEV +A +
Sbjct: 65  ISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVASN 121

>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J Length = 120

 Score =  118 bits (298), Expect = 3e-36
 Identities = 61/119 (51%), Positives = 85/119 (71%), Gaps = 7/119 (5%)

Query: 4   AAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLV-RGAKDKRLRVKGPVRMPTK 62
            A K TK G EE +    ++RITL+ KN+K++EK  +++V R  K +++ VKGPVRMPTK
Sbjct: 2   DATKETKKGEEEVK--KVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTK 59

Query: 63  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117
            L IT RKSPCGEG+ TWDRFE+R++KR+IDL  +      IT+  I+PGVE+E+T+  
Sbjct: 60  TLVITVRKSPCGEGSKTWDRFEMRIYKRIIDLTCNVPDVKTITNFRIDPGVEIELTMTA 118

>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ... Length = 105

 Score =  110 bits (276), Expect = 6e-33
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 20  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT 79
           + KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++
Sbjct: 1   MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDS 59

Query: 80  WDRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
            + FELR H R++D+ +        + ++ +  GVE+E+  
Sbjct: 60  REHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKT 100

>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 197

 Score =  108 bits (271), Expect = 3e-31
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 4   AAMKPTKPGLEEAQE-QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62
           +       G +  Q     KIRI L S  V  +E  C  ++  A+    +  GPV +PTK
Sbjct: 81  SETSALGIGADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTK 140

Query: 63  VLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
                  KSP       +  FE+R H+R+ID+          +  + +  GV+VEV +
Sbjct: 141 KRIFCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J Length = 87

 Score = 67.1 bits (164), Expect = 4e-16
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 27/103 (26%)

Query: 19  QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTN 78
           Q  +IRI L + + + +++   ++V  AK    +V+GP+ +PT+                
Sbjct: 7   QNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTR---------------- 50

Query: 79  TWDRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTIA 116
                  R H R++D+    +     +  + +  GV+V++++ 
Sbjct: 51  ------SRTHLRLVDIVEPTEKTVDDLMRLDLAAGVDVQISLG 87

>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J Length = 83

 Score = 53.6 bits (129), Expect = 6e-11
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 27/100 (27%)

Query: 21  HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
            KIRI L + + + L++    ++   K     VKGP+ +PT+                  
Sbjct: 4   EKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRK----------------- 46

Query: 81  DRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
                    R++D+          +  I++  GV+VEV +
Sbjct: 47  -----SEFSRILDIIRFTPQTIEALMEISLPAGVDVEVKM 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3iz6_J	128	40S ribosomal protein S20 (S10P); eukaryotic ribos	100.0
3u5c_U	121	40S ribosomal protein S20; translation, ribosome,	100.0
3j20_L	102	30S ribosomal protein S10P; archaea, archaeal, KIN	100.0
2xzm_J	120	Ribosomal protein S10 containing protein; ribosome	100.0
2zkq_j	119	40S ribosomal protein S20E; protein-RNA complex, 4	100.0
3r8n_J	98	30S ribosomal protein S10; protein biosynthesis, R	100.0
2vqe_J	105	30S ribosomal protein S10, 30S ribosomal protein S	100.0
3bbn_J	197	Ribosomal protein S10; small ribosomal subunit, sp	100.0
3d3c_J	87	30S ribosomal protein S10, N utilization substance	99.92
3r2c_J	83	Protein NUSE, 30S ribosomal protein S10; cross spe	99.9

>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.1e-44  Score=256.03  Aligned_cols=110  Identities=84%  Similarity=1.223  Sum_probs=103.4

Q ss_pred             CCCCCccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEE
Q 033482            8 PTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRV   87 (118)
Q Consensus         8 ~~~~~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~   87 (118)
                      ..+.|.+..+.+.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||||||||||||+|+
T Consensus        14 ~~~~~~~~~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPTk~~r~TvlRSPhv~gKkSrEqFE~Rt   93 (128)
T 3iz6_J           14 SGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRV   93 (128)
T ss_dssp             CSSSCCBCCSSSBCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCCCEEEEEEEEEEECCCCCSSCCSSCCEEEEE
T ss_pred             ccccccccccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceecccCCCCceEEEEEEecCCCCCCcchhheEEEE
Confidence            33357777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeCCCC----ceeeecCCCcEEEEEEec
Q 033482           88 HKRVIDLFSSPD----ITSITIEPGVEVEVTIAD  117 (118)
Q Consensus        88 hkR~i~I~~~~~----l~~~~lP~gV~iev~l~~  117 (118)
                      |||+|+|.++++    |+++++|+||+|||++++
T Consensus        94 HKRlIdI~~~~~~v~~l~~l~lP~GV~veI~i~~  127 (128)
T 3iz6_J           94 HKRVIDLVSSADVVKQITSITIEPGVEVEVTISD  127 (128)
T ss_dssp             EEEEEECCSSCCHHHHHHHHHSCCCSSCEEECCC
T ss_pred             EEEEEEEeCcHHHHHHHhCCcCCCCCEEEEEEec
Confidence            999999998866    899999999999999876

>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*

Probab=100.00  E-value=1.7e-42  Score=245.67  Aligned_cols=103  Identities=57%  Similarity=0.923  Sum_probs=97.4

Q ss_pred             ccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEe
Q 033482           15 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL   94 (118)
Q Consensus        15 ~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I   94 (118)
                      ..+.+.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||||||||||||+|+|+|+|+|
T Consensus        14 ~~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI   93 (121)
T 3u5c_U           14 QQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDL   93 (121)
T ss_dssp             -CCCCCCCEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEE
T ss_pred             cccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEe
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCC----ceeeecCCCcEEEEEEec
Q 033482           95 FSSPD----ITSITIEPGVEVEVTIAD  117 (118)
Q Consensus        95 ~~~~~----l~~~~lP~gV~iev~l~~  117 (118)
                      .+++.    |+++++|+||+|+|++++
T Consensus        94 ~~~~~~v~~l~~~~lp~GV~vei~i~~  120 (121)
T 3u5c_U           94 EAPVQIVKRITQITIEPGVDVEVVVAS  120 (121)
T ss_dssp             CCCHHHHHHHHHSSCCTTCEEEECCSC
T ss_pred             cCCHHHHHHHHcCcCCCCCEEEEEEcC
Confidence            97654    899999999999999875

>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=9.1e-42  Score=235.54  Aligned_cols=97  Identities=42%  Similarity=0.730  Sum_probs=92.1

Q ss_pred             eeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC
Q 033482           20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD   99 (118)
Q Consensus        20 ~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~   99 (118)
                      |++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||||||||||||+|+|+|+|+|..+++
T Consensus         1 ~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi~~~~~   80 (102)
T 3j20_L            1 MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADER   80 (102)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEEEECHH
T ss_pred             CcEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEEeCCHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999954433


Q ss_pred             ----ceeeecCCCcEEEEEEe
Q 033482          100 ----ITSITIEPGVEVEVTIA  116 (118)
Q Consensus       100 ----l~~~~lP~gV~iev~l~  116 (118)
                          ++++++|+||+|||++.
T Consensus        81 ~v~~l~~~~lp~GV~vei~~~  101 (102)
T 3j20_L           81 AMRQIMRIRVPEDVTIEIELI  101 (102)
T ss_dssp             HHHHHTTSCCCSSCEEEEEEE
T ss_pred             HHHHHhcCcCCCCcEEEEEEe
Confidence                89999999999999985

>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J

Probab=100.00  E-value=1.8e-40  Score=234.87  Aligned_cols=106  Identities=52%  Similarity=0.877  Sum_probs=95.2

Q ss_pred             CccccccceeEEEEEEeecCchhHHHHHHHHHHHHhh-cCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEE
Q 033482           12 GLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKD-KRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKR   90 (118)
Q Consensus        12 ~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~-~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR   90 (118)
                      +.+..+++.++++|+|+|||+..||++|.+|.++|++ +|+.++||+||||++.+|||||||||.||+||||||+|+|+|
T Consensus         8 ~~~~~~~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~~g~~v~GPipLPtk~~~~TvlRSPhgv~kksreqFE~RthKR   87 (120)
T 2xzm_J            8 KKGEEEVKKVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTWDRFEMRIYKR   87 (120)
T ss_dssp             ------CCCEEEEEEEEESCHHHHHHHHHHHHHHHHTSTTCEEEEEEECCCEEEEEEEECSSSSCSSCCEEEEEEEEEEE
T ss_pred             CcccccccceEEEEEEEECCHHHHHHHHHHHHHHHHHhcCCeeecCcCCCceeEEEEEEeCCCCCCCcchHheEEEEEEE
Confidence            3445567778999999999999999999999999999 999999999999999999999999944599999999999999


Q ss_pred             EEEeeCCCC----ceeeecCCCcEEEEEEec
Q 033482           91 VIDLFSSPD----ITSITIEPGVEVEVTIAD  117 (118)
Q Consensus        91 ~i~I~~~~~----l~~~~lP~gV~iev~l~~  117 (118)
                      +|+|.+.++    |+++++|+||+|||++.+
T Consensus        88 lIdI~~~~~tv~~l~~l~lp~GV~ieI~i~~  118 (120)
T 2xzm_J           88 IIDLTCNVPDVKTITNFRIDPGVEIELTMTA  118 (120)
T ss_dssp             EEEEEECHHHHHHHSCSCCCSSEEEEEEEEC
T ss_pred             EEEEeCCcHHHHHHHcCcCCCCCEEEEEEec
Confidence            999998877    889999999999999975

>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.2e-41  Score=239.23  Aligned_cols=107  Identities=71%  Similarity=1.149  Sum_probs=90.4

Q ss_pred             CCccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEE
Q 033482           11 PGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKR   90 (118)
Q Consensus        11 ~~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR   90 (118)
                      .+.+..+++.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||+|||||||||+|+|+|
T Consensus         8 ~~~~~~~~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhg~~KksreqFE~RthKR   87 (119)
T 2zkq_j            8 KTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR   87 (119)
T ss_dssp             -----------CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCC
T ss_pred             cccccccccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccCCcCCCCeeEEEEEEcCCCCCCCcchHheEeEEEEE
Confidence            34445567889999999999999999999999999999999999999999999999999999987799999999999999


Q ss_pred             EEEeeCCCC----ceeeecCCCcEEEEEEec
Q 033482           91 VIDLFSSPD----ITSITIEPGVEVEVTIAD  117 (118)
Q Consensus        91 ~i~I~~~~~----l~~~~lP~gV~iev~l~~  117 (118)
                      +|+|.++++    |+++++|+||+|+|++.+
T Consensus        88 lIdI~~~~~~v~~l~~~~lp~GV~ieI~i~~  118 (119)
T 2zkq_j           88 LIDLHSPSEIVKQITSISIEPGVEVEVTIAD  118 (119)
T ss_dssp             CCCBCSCTHHHHHHHHCCCCSSEEEEEC---
T ss_pred             EEEEeChHHHHHHHHcCcCCCCCEEEEEEec
Confidence            999998765    889999999999999864

>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...

Probab=100.00  E-value=1.8e-38  Score=219.57  Aligned_cols=96  Identities=29%  Similarity=0.588  Sum_probs=89.9

Q ss_pred             eeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC
Q 033482           20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD   99 (118)
Q Consensus        20 ~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~   99 (118)
                      +++++|+|+|||+..||++|.+|.++|+.+|+.++||+||||++.+||||||||++ ||||||||+|+|+|+|+|.+.++
T Consensus         1 ~~kirI~Lks~d~~~Ld~~~~~i~~~ak~~g~~v~gpi~LPtk~~~~tvlrSPhv~-kksreqfE~r~hkR~I~i~~~~~   79 (105)
T 2vqe_J            1 MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKH-KDSREHFELRTHNRLVDIINPNR   79 (105)
T ss_dssp             --CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCCCCCCBCCEEECCSSSSSC-TTCCCEEECCBEEECCCBSSCCT
T ss_pred             CcEEEEEEEEcCHHHHHHHHHHHHHHHHHhCCcccCccCCCCEEEEEEEEcCCCCC-CChHHhEEeEEEEEEEEEeCCCH
Confidence            36899999999999999999999999999999999999999999999999999998 89999999999999999987665


Q ss_pred             -----ceeeecCCCcEEEEEEe
Q 033482          100 -----ITSITIEPGVEVEVTIA  116 (118)
Q Consensus       100 -----l~~~~lP~gV~iev~l~  116 (118)
                           ++++++|+||+|+|++.
T Consensus        80 ~~~~~l~~~~lp~GV~iei~~~  101 (105)
T 2vqe_J           80 KTIEQLMTLDLPTGVEIEIKTV  101 (105)
T ss_dssp             THHHHSSSCCCCSSCEEEECC-
T ss_pred             HHHHHHHhCcCCCCCEEEEEEE
Confidence                 88999999999999874

>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=7.6e-37  Score=231.28  Aligned_cols=102  Identities=31%  Similarity=0.506  Sum_probs=91.1

Q ss_pred             cccccc-ceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEE
Q 033482           13 LEEAQE-QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRV   91 (118)
Q Consensus        13 ~~~~~~-~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~   91 (118)
                      .|+..| +.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++++||+|||||+| ||||||||+|+|||+
T Consensus        90 ~e~~~m~~~~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~-KKSREQFEmRtHKRl  168 (197)
T 3bbn_J           90 ADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVH-KDARFHFEIRTHQRL  168 (197)
T ss_dssp             ---------CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSC-CSSCCCEEEEEEEEE
T ss_pred             CcccccccCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCC-CCcceeEEEEEEEEE
Confidence            343333 447999999999999999999999999999999999999999999999999999999 899999999999999


Q ss_pred             EEeeCCCC-----ceeeecCCCcEEEEEE
Q 033482           92 IDLFSSPD-----ITSITIEPGVEVEVTI  115 (118)
Q Consensus        92 i~I~~~~~-----l~~~~lP~gV~iev~l  115 (118)
                      |+|.+.++     ++++++|+||+|||++
T Consensus       169 IdI~~~t~~tvd~lm~l~LP~GV~IEIkl  197 (197)
T 3bbn_J          169 IDILYPTAQTIDSLMQLDLPAGVDVEVKL  197 (197)
T ss_dssp             EEESSCCHHHHHHHTTCCCCSSCEEEEEC
T ss_pred             EEEECCCHHHHHHHHcCcCCCCCEEEEeC
Confidence            99998885     8999999999999975

>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J

Probab=99.92  E-value=1.4e-25  Score=150.69  Aligned_cols=78  Identities=26%  Similarity=0.583  Sum_probs=73.1

Q ss_pred             cccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEee
Q 033482           16 AQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLF   95 (118)
Q Consensus        16 ~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~   95 (118)
                      .+|+.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++                      |+|||+|+|+
T Consensus         4 ~~m~~~kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~----------------------R~HKRlIdi~   61 (87)
T 3d3c_J            4 GSMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS----------------------RTHLRLVDIV   61 (87)
T ss_dssp             CCCSSCEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET----------------------TEEEEEEEEE
T ss_pred             ccccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCccCCCCCCCCCC----------------------ceEEEEEEEe
Confidence            346668999999999999999999999999999999999999999999                      9999999999


Q ss_pred             CCCC-----ceeeecCCCcEEEEEE
Q 033482           96 SSPD-----ITSITIEPGVEVEVTI  115 (118)
Q Consensus        96 ~~~~-----l~~~~lP~gV~iev~l  115 (118)
                      ++++     ++++++|+||+|||++
T Consensus        62 ~~~~~~v~~l~~l~lp~GV~ieI~i   86 (87)
T 3d3c_J           62 EPTEKTVDDLMRLDLAAGVDVQISL   86 (87)
T ss_dssp             SCCHHHHHHHHHCCCCTTEEEEEEE
T ss_pred             CCCHHHHHHHHcCCCCCCceEEEEE
Confidence            8765     8999999999999986

>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J

Probab=99.90  E-value=2e-24  Score=144.06  Aligned_cols=76  Identities=28%  Similarity=0.501  Sum_probs=71.3

Q ss_pred             cceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCC
Q 033482           18 EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS   97 (118)
Q Consensus        18 ~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~   97 (118)
                      |..++++|+|+|||+..||.+|.+|.+.|+++|+.++||+||||++.+|                      ||+|+|+++
T Consensus         1 ~~~~kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~~~~----------------------KRlIdi~~~   58 (83)
T 3r2c_J            1 MEQEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEF----------------------SRILDIIRF   58 (83)
T ss_dssp             --CCCEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEE----------------------EEEEEEEEC
T ss_pred             CCCcEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCCcCCCCcceEE----------------------EEEEEEcCC
Confidence            3468999999999999999999999999999999999999999999999                      999999988


Q ss_pred             CC-----ceeeecCCCcEEEEEE
Q 033482           98 PD-----ITSITIEPGVEVEVTI  115 (118)
Q Consensus        98 ~~-----l~~~~lP~gV~iev~l  115 (118)
                      ++     ||++++|+||++||++
T Consensus        59 ~~~~v~~l~~l~lp~GV~vei~~   81 (83)
T 3r2c_J           59 TPQTIEALMEISLPAGVDVEVKM   81 (83)
T ss_dssp             CHHHHHHHHTCCCCTTCEEEEEC
T ss_pred             CHHHHHHHhCCCCCCCcEEEEEE
Confidence            66     8999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d2qalj1	98	d.58.15.1 (J:5-102) Ribosomal protein S10 {Escheri	2e-29
d2uubj1	98	d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus	3e-29

>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 2e-29
 Identities = 24/99 (24%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           +IRI L + + + +++   ++V  AK    +V+GP+ +PT+    T   SP     +  D
Sbjct: 1   RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHV-NKDARD 59

Query: 82  RFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
           ++E+R H R++D+    +     +  + +  GV+V++++
Sbjct: 60  QYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 98

>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Thermus thermophilus [TaxId: 274]

 Score = 99.4 bits (248), Expect = 3e-29
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 1   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 59

Query: 82  RFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 60  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEI 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d2qalj1	98	Ribosomal protein S10 {Escherichia coli [TaxId: 56	100.0
d2uubj1	98	Ribosomal protein S10 {Thermus thermophilus [TaxId	100.0

>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-39  Score=221.05  Aligned_cols=93  Identities=26%  Similarity=0.567  Sum_probs=89.6

Q ss_pred             EEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC--
Q 033482           22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD--   99 (118)
Q Consensus        22 ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~--   99 (118)
                      +++|+|+|||+..||++|++|.++|+.+|+.++||+||||++.+||||||||++ |+||||||+|+|+|+|+|.+.++  
T Consensus         1 kirI~L~s~d~~~Ld~~~~~i~~~a~~~g~~v~GPiplPtk~~~~tvlrSPh~~-kksreqfE~r~hkRli~i~~~~~~~   79 (98)
T d2qalj1           1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVN-KDARDQYEIRTHLRLVDIVEPTEKT   79 (98)
T ss_dssp             CBEECEEESSHHHHHHHHHHHHHHHTTSSCCCCBCCCCCCEEEEEEECCSSSSC-TTCCEEEEEEEEEECBCBSSCCHHH
T ss_pred             CEEEEEEeecHHHHHHHHHHHHHHHHHcCCeEECCCCCCcEEEEEEEEecCCCC-CchhhheeeeeeEEEEEEECCCHHH
Confidence            589999999999999999999999999999999999999999999999999997 89999999999999999998876  


Q ss_pred             ---ceeeecCCCcEEEEEE
Q 033482          100 ---ITSITIEPGVEVEVTI  115 (118)
Q Consensus       100 ---l~~~~lP~gV~iev~l  115 (118)
                         ++++++|+||+|+|++
T Consensus        80 ~~~l~~~~lp~GV~i~i~l   98 (98)
T d2qalj1          80 VDALMRLDLAAGVDVQISL   98 (98)
T ss_dssp             HHHTTTSCCCSSCCCCEEC
T ss_pred             HHHHhcCCCCCCcEEEEEC
Confidence               8899999999999975

>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-38  Score=215.51  Aligned_cols=92  Identities=30%  Similarity=0.610  Sum_probs=88.4

Q ss_pred             EEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC--
Q 033482           22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD--   99 (118)
Q Consensus        22 ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~--   99 (118)
                      +|+|+|+|||+..||.+|++|.++|+.+|++++||+||||++.+||+|||||++ |+||||||+|+|+|+|+|.+.++  
T Consensus         1 kirI~l~s~d~~~Ld~~~~~i~~~a~~~g~~v~gpipLPtk~~~~tvlrSphv~-kksreqfE~rthkR~i~i~~~~~~~   79 (98)
T d2uubj1           1 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKH-KDSREHFELRTHNRLVDIINPNRKT   79 (98)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHTHHHHTTSSCCCCEEEEEEEEEEEECCSSSSSC-TTCCCEEEEEEEEEEEECSSCCTTH
T ss_pred             CEEEEEEEecHHHHHHHHHHHHHHHHHcCCeeccCCCCCcEEEEEEEEecCCCC-CchHHHheeeEEEEEEEEeCCCHHH
Confidence            589999999999999999999999999999999999999999999999999998 89999999999999999988765  


Q ss_pred             ---ceeeecCCCcEEEEE
Q 033482          100 ---ITSITIEPGVEVEVT  114 (118)
Q Consensus       100 ---l~~~~lP~gV~iev~  114 (118)
                         ++++++|+||+|+|+
T Consensus        80 ~~~l~~~~lP~GV~i~ik   97 (98)
T d2uubj1          80 IEQLMTLDLPTGVEIEIK   97 (98)
T ss_dssp             HHHSSSCCCCSSCEECCC
T ss_pred             HHHHhCCCCCCCcEEEEe
Confidence               899999999999975