Citrus Sinensis ID: 033604


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
MSLRQQRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPAVCTKLLSDDYLPWNVGSFSNDV
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccc
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccEEEccccccccccccccccccccccHHHcEEEccccccHHHHHHHcccccccccccEEcccc
mslrqqrgnsnpAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGflssgkntsnfkrprklqpedrifslssvtspavctkllsddylpwnvgsfsndv
mslrqqrgnsnpaatLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPAVCTKLlsddylpwnvgsfsndv
MSLRQQRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPAVCTKLLSDDYLPWNVGSFSNDV
****************************ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFL********************IFSLSSVTSPAVCTKLLSDDYLPWNVG******
************************RFQDELRNIENQVYELETSYLQDIGQFGNAFKGFE*********************DRIFSLSSV**************************
************AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPAVCTKLLSDDYLPWNVGSFSNDV
***********PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS**************Q*****FSLSSVTSPAVCTKLLSDDYLPWNVGSFSND*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSLRQQRGNSNPAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPAVCTKLLSDDYLPWNVGSFSNDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query115 2.2.26 [Sep-21-2011]
Q52KD8188 Chromatin modification-re N/A no 0.721 0.441 0.4 2e-11
Q68ER9191 Chromatin modification-re yes no 0.721 0.434 0.4 2e-11
Q5ZIX3182 Chromatin modification-re yes no 0.721 0.456 0.4 3e-11
Q58CU0191 Chromatin modification-re yes no 0.721 0.434 0.4 3e-11
Q9HAF1191 Chromatin modification-re yes no 0.721 0.434 0.4 3e-11
Q2VPQ9191 Chromatin modification-re yes no 0.721 0.434 0.4 3e-11
Q6AZD3192 Chromatin modification-re yes no 0.695 0.416 0.397 6e-10
O14240138 Chromatin modification-re yes no 0.669 0.557 0.392 7e-06
Q6FJ4691 Chromatin modification-re yes no 0.6 0.758 0.320 0.0005
>sp|Q52KD8|EAF6_XENLA Chromatin modification-related protein MEAF6 OS=Xenopus laevis GN=meaf6 PE=2 SV=1 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 16  LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTS--NFKR 73
           LA LV ++    + L N+E Q+Y  E SYL+D   +GN  +G++ +L++ KN++  N +R
Sbjct: 19  LAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRR 78

Query: 74  PRKLQPEDRIFSLSSVTSPAVCTKL 98
            RK +  +R+FS SSVTS A  + L
Sbjct: 79  NRKFKEAERLFSKSSVTSAAAVSSL 103




Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histone H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. Component of the HBO1 complex which has a histone H4-specific acetyltransferase activity, a reduced activity toward histone H3 and is responsible for the bulk of histone H4 acetylation in vivo. Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity.
Xenopus laevis (taxid: 8355)
>sp|Q68ER9|EAF6_XENTR Chromatin modification-related protein MEAF6 OS=Xenopus tropicalis GN=meaf6 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIX3|EAF6_CHICK Chromatin modification-related protein MEAF6 OS=Gallus gallus GN=MEAF6 PE=2 SV=1 Back     alignment and function description
>sp|Q58CU0|EAF6_BOVIN Chromatin modification-related protein MEAF6 OS=Bos taurus GN=MEAF6 PE=2 SV=2 Back     alignment and function description
>sp|Q9HAF1|EAF6_HUMAN Chromatin modification-related protein MEAF6 OS=Homo sapiens GN=MEAF6 PE=1 SV=1 Back     alignment and function description
>sp|Q2VPQ9|EAF6_MOUSE Chromatin modification-related protein MEAF6 OS=Mus musculus GN=Meaf6 PE=2 SV=1 Back     alignment and function description
>sp|Q6AZD3|EAF6_DANRE Chromatin modification-related protein MEAF6 OS=Danio rerio GN=meaf6 PE=2 SV=1 Back     alignment and function description
>sp|O14240|EAF6_SCHPO Chromatin modification-related protein eaf6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eaf6 PE=1 SV=1 Back     alignment and function description
>sp|Q6FJ46|EAF6_CANGA Chromatin modification-related protein EAF6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EAF6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query115
224066249157 predicted protein [Populus trichocarpa] 0.817 0.598 0.712 4e-30
255581437158 conserved hypothetical protein [Ricinus 0.886 0.645 0.650 1e-29
225433132159 PREDICTED: chromatin modification-relate 0.773 0.559 0.730 1e-29
388518091156 unknown [Lotus japonicus] 0.817 0.602 0.670 1e-28
116785318130 unknown [Picea sitchensis] 0.843 0.746 0.628 2e-28
224285184156 unknown [Picea sitchensis] 0.843 0.621 0.628 4e-28
351727016157 uncharacterized protein LOC100306348 [Gl 0.817 0.598 0.648 5e-28
351721684157 uncharacterized protein LOC100499798 [Gl 0.817 0.598 0.638 1e-27
388498430157 unknown [Medicago truncatula] 0.817 0.598 0.648 2e-27
255567276157 conserved hypothetical protein [Ricinus 0.765 0.560 0.681 2e-27
>gi|224066249|ref|XP_002302046.1| predicted protein [Populus trichocarpa] gi|222843772|gb|EEE81319.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 74/94 (78%)

Query: 1  MSLRQQRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEG 60
          M    QRG+SNPAA LA L+SKR++  DELR IE QVY+LETSYLQD GQ GN  KGFEG
Sbjct: 1  MDAEGQRGSSNPAAMLANLLSKRAKLHDELRIIEKQVYDLETSYLQDPGQCGNVLKGFEG 60

Query: 61 FLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPAV 94
          FLSS KNT+  KR RK QPEDR+FSLSSVTSPA 
Sbjct: 61 FLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAA 94




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581437|ref|XP_002531526.1| conserved hypothetical protein [Ricinus communis] gi|223528843|gb|EEF30845.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225433132|ref|XP_002285184.1| PREDICTED: chromatin modification-related protein eaf6 [Vitis vinifera] gi|296083654|emb|CBI23643.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388518091|gb|AFK47107.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|116785318|gb|ABK23676.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|224285184|gb|ACN40319.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|351727016|ref|NP_001237402.1| uncharacterized protein LOC100306348 [Glycine max] gi|255628271|gb|ACU14480.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351721684|ref|NP_001236194.1| uncharacterized protein LOC100499798 [Glycine max] gi|255626681|gb|ACU13685.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388498430|gb|AFK37281.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255567276|ref|XP_002524619.1| conserved hypothetical protein [Ricinus communis] gi|223536172|gb|EEF37827.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query115
TAIR|locus:505006459163 AT4G14385 "AT4G14385" [Arabido 0.8 0.564 0.634 5.2e-26
FB|FBgn0035624225 Eaf6 "Eaf6" [Drosophila melano 0.765 0.391 0.411 7.9e-14
UNIPROTKB|Q52KD8188 meaf6 "Chromatin modification- 0.721 0.441 0.4 1.9e-12
UNIPROTKB|Q5ZIX3182 MEAF6 "Chromatin modification- 0.721 0.456 0.4 2.4e-12
UNIPROTKB|A6H762201 C3H1orf149 "Chromatin modifica 0.721 0.412 0.4 2.4e-12
UNIPROTKB|Q58CU0191 MEAF6 "Chromatin modification- 0.721 0.434 0.4 2.4e-12
UNIPROTKB|B1AK64192 MEAF6 "Chromatin modification- 0.721 0.432 0.4 2.4e-12
UNIPROTKB|Q9HAF1191 MEAF6 "Chromatin modification- 0.721 0.434 0.4 2.4e-12
UNIPROTKB|Q68ER9191 meaf6 "Chromatin modification- 0.721 0.434 0.4 2.4e-12
MGI|MGI:1917338191 Meaf6 "MYST/Esa1-associated fa 0.721 0.434 0.4 2.4e-12
TAIR|locus:505006459 AT4G14385 "AT4G14385" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 59/93 (63%), Positives = 74/93 (79%)

Query:     1 MSLRQQRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEG 60
             MSL Q + +++P A L +L++KR + + ELR+IE QVYELETSYLQ+    GNA KGFEG
Sbjct:     1 MSLGQ-KSSTDPGAMLTSLLNKREKLRQELRSIEKQVYELETSYLQESSHIGNALKGFEG 59

Query:    61 FLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSPA 93
             FLSS K+T++ KR RK QPEDR+FSLSSVTSPA
Sbjct:    60 FLSSSKSTASAKRSRKFQPEDRVFSLSSVTSPA 92




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0048573 "photoperiodism, flowering" evidence=RCA
FB|FBgn0035624 Eaf6 "Eaf6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q52KD8 meaf6 "Chromatin modification-related protein MEAF6" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIX3 MEAF6 "Chromatin modification-related protein MEAF6" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A6H762 C3H1orf149 "Chromatin modification-related protein MEAF6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CU0 MEAF6 "Chromatin modification-related protein MEAF6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B1AK64 MEAF6 "Chromatin modification-related protein MEAF6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HAF1 MEAF6 "Chromatin modification-related protein MEAF6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q68ER9 meaf6 "Chromatin modification-related protein MEAF6" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
MGI|MGI:1917338 Meaf6 "MYST/Esa1-associated factor 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query115
pfam0934080 pfam09340, NuA4, Histone acetyltransferase subunit 1e-27
>gnl|CDD|220187 pfam09340, NuA4, Histone acetyltransferase subunit NuA4 Back     alignment and domain information
 Score = 96.2 bits (240), Expect = 1e-27
 Identities = 38/77 (49%), Positives = 51/77 (66%)

Query: 16 LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPR 75
          L  L+ K+ + ++EL  +E Q+Y+ ET YL+D    GN  KGF+G+L S  N S  +R R
Sbjct: 4  LKELLQKKKKLEEELAALERQIYDKETEYLEDTTSGGNIIKGFDGYLKSSTNGSAQRRKR 63

Query: 76 KLQPEDRIFSLSSVTSP 92
          K   +DRIFSLSSVTSP
Sbjct: 64 KFTDDDRIFSLSSVTSP 80


The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control. Length = 80

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 115
PF0934080 NuA4: Histone acetyltransferase subunit NuA4; Inte 100.0
KOG3856135 consensus Uncharacterized conserved protein [Funct 99.94
KOG3856135 consensus Uncharacterized conserved protein [Funct 88.46
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast [] Back     alignment and domain information
Probab=100.00  E-value=1.5e-36  Score=206.66  Aligned_cols=80  Identities=45%  Similarity=0.803  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccCCCCCch
Q 033604           13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSP   92 (115)
Q Consensus        13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfDgylk~~~~~~~~kr~~~~~d~DRiFS~SS~ts~   92 (115)
                      +++|++|+++|++|+++|++||+|||++||+||+++..+||||||||||+++++.+++.+|+++|+++|||||+||+|||
T Consensus         1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~~~~~~~~~~~~~~~~~dRiFS~SS~t~~   80 (80)
T PF09340_consen    1 KKELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKSSSGAANSRRKRGFTDDDRIFSLSSVTSP   80 (80)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhccccccccccccCCCCccccCcccccccCC
Confidence            47899999999999999999999999999999998888999999999999998766677899999999999999999997



NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].

>KOG3856 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3856 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00