Citrus Sinensis ID: 033635

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPYSSQG
Secondary Structure (PSIPRED)
ccccEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mhdfcftipyglilIGGGIVgfakkgstaslaggVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMetskvmpagivcphdrvlsvqncdrwqpyssqg
Flexible Loop (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPYSSQG
Low Complexity Region (SEG)
MHDFCFTIPYgliligggivgFAKKgstaslaggvgtglllvlagylslKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPYSSQG
Disordered region (IsUnstruct)
**DFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRW*******
Disordered Region (DISOPRED)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPY****
Disordered Region (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPYSSQG
Disordered Region (DISPRO)
*HDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPY****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPYSSQG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
O64847	108	UPF0136 membrane protein	no	no	0.719	0.759	0.375	2e-05
Q5R751	112	Transmembrane protein 14C	yes	no	0.736	0.75	0.311	0.0003
Q9W1K0	112	UPF0136 membrane protein	yes	no	0.824	0.839	0.287	0.0003
Q9CQN6	114	Transmembrane protein 14C	yes	no	0.736	0.736	0.301	0.0006

>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 6  FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65
          FT+ Y  +L  GG++G+ K+GS  SL  G G+  L            E   N   A  I 
Sbjct: 9  FTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALFYYV------YTELPGNPVLASSIG 62

Query: 66 TVCAAVLTVVMAQRYMETSKVMPAGIVC 93
           V +A LT +M  RY+ T KV+PAG+V 
Sbjct: 63 IVGSAALTGMMGSRYLRTRKVVPAGLVS 90

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R751|TM14C_PONAB Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          +H F F   Y  ++  GGI+G+AK GS  SLA G+  G L  L  Y   +  +  +N + 
Sbjct: 10 LHWFGFG--YAALVASGGIIGYAKAGSVPSLAAGLLFGSLASLGAY---QLSQDPRNVW- 63

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
             +    +  L  +M  R+  + K MPAG++ 
Sbjct: 64 ---VFLATSGTLAGIMGMRFYHSGKFMPAGLIA 93

Required for normal heme biosynthesis.

Pongo abelii (taxid: 9601)

>sp|Q9W1K0|U136_DROME UPF0136 membrane protein CG5532 OS=Drosophila melanogaster GN=CG5532 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 10  YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCA 69
           Y   +  GGI+G+AK GS  SL  G+  G LL    +L+ +   +        +++   +
Sbjct: 10  YAATVAAGGIMGYAKAGSIPSLGAGLAFGALLGYGAHLNSQDTPRP-------LLQLGTS 62

Query: 70  AVLTVVMAQRYMETSKVMPAGIVCPHDRVLSVQNCDRWQPY 110
             L  +M  R+  + K+MPAG+VC       V+N   +  Y
Sbjct: 63  LFLAGLMGARWNRSGKLMPAGMVCMLSVAALVKNLATYNRY 103

Drosophila melanogaster (taxid: 7227)

>sp|Q9CQN6|TM14C_MOUSE Transmembrane protein 14C OS=Mus musculus GN=Tmem14c PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          +H F F   Y  ++  GGI+G+AK GS  SLA G      L   G   L A++  ++   
Sbjct: 11 LHYFGFG--YAALVATGGIIGYAKAGSVPSLAAG------LFFGGLAGLGAYQLSQDPR- 61

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
           + +    +  L  +M  R+  + K MPAG++ 
Sbjct: 62 NVWVFLATSGTLAGIMGMRFYNSGKFMPAGLIA 94

Required for normal heme biosynthesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
225461013	119	PREDICTED: UPF0136 membrane protein At2g	0.815	0.781	0.784	2e-36
224126437	119	predicted protein [Populus trichocarpa]	0.815	0.781	0.731	3e-34
357494405	121	hypothetical protein MTR_5g092160 [Medic	0.885	0.834	0.673	4e-34
449468492	119	PREDICTED: UPF0136 membrane protein At2g	0.885	0.848	0.673	1e-33
351723771	119	uncharacterized protein LOC100306195 [Gl	0.815	0.781	0.709	3e-32
15232290	119	Transmembrane proteins 14C [Arabidopsis	0.815	0.781	0.709	8e-32
297830734	119	hypothetical protein ARALYDRAFT_479576 [	0.815	0.781	0.698	2e-31
388503384	119	unknown [Lotus japonicus]	0.815	0.781	0.709	3e-31
18403201	119	Transmembrane proteins 14C [Arabidopsis	0.815	0.781	0.677	2e-29
297847424	119	hypothetical protein ARALYDRAFT_892015 [	0.815	0.781	0.666	4e-29

>gi|225461013|ref|XP_002280849.1| PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera] gi|297737418|emb|CBI26619.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 85/93 (91%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYGL+L+GGGIVG+AKKGS ASL GG+GTG +L+LAGYLSLKAF+KKKNSY 
Sbjct: 1  MHDFCFTIPYGLVLVGGGIVGYAKKGSLASLGGGLGTGFVLILAGYLSLKAFKKKKNSYL 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A+++ETVCAA LT VM QRYM+TSK+MPAGIV 
Sbjct: 61 ALILETVCAAALTWVMGQRYMQTSKIMPAGIVA 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126437|ref|XP_002319838.1| predicted protein [Populus trichocarpa] gi|118488838|gb|ABK96229.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858214|gb|EEE95761.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 81/93 (87%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYGL+L+ GG++G+ KKGS ASL GG GTGL+L+ AGYLSLKAFEK+KNS+ 
Sbjct: 1  MHDFCFTIPYGLVLVIGGVIGYLKKGSMASLGGGAGTGLVLIFAGYLSLKAFEKRKNSFL 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
           + IETVCAA+LT VM QRYM+TSK+MPAGIV 
Sbjct: 61 GLAIETVCAAILTFVMGQRYMQTSKIMPAGIVA 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494405|ref|XP_003617491.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|217071360|gb|ACJ84040.1| unknown [Medicago truncatula] gi|355518826|gb|AET00450.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|388495030|gb|AFK35581.1| unknown [Medicago truncatula]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 85/101 (84%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+ GF  KGSTASLAGGVGTGLLL+LAGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGLFGFIHKGSTASLAGGVGTGLLLILAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSV 101
           A+ IE +CA VLT +M QRY++TSK+MPAG++     ++++
Sbjct: 61  ALAIEILCAGVLTWIMGQRYLQTSKIMPAGMIAGLSALMTL 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468492|ref|XP_004151955.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus] gi|449489972|ref|XP_004158473.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 85/101 (84%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGLIL+GGGI G+ +KGS  SLAGGVGTGL L+LAGYLSL AF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLILVGGGIFGYLRKGSIVSLAGGVGTGLALILAGYLSLGAFKKKKNSYL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVCPHDRVLSV 101
           A+++ETVC+  LT VM QRY++TSK+MPAG+V     ++++
Sbjct: 61  ALILETVCSGALTWVMGQRYLQTSKIMPAGVVAGISSLMTL 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723771|ref|NP_001235243.1| uncharacterized protein LOC100306195 [Glycine max] gi|255627833|gb|ACU14261.1| unknown [Glycine max]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 80/93 (86%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYGL+L+GGG+  +  KGS ASLAGGVG+GLLL++AGYLSL AF K+KNSY 
Sbjct: 1  MHDFCFTIPYGLMLVGGGLFAYISKGSIASLAGGVGSGLLLIVAGYLSLNAFGKRKNSYL 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A+ +ETVCAA+LT VM QRY+ TSK+MPAG+V 
Sbjct: 61 ALFLETVCAAILTWVMGQRYLGTSKIMPAGLVA 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232290|ref|NP_188687.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|11994139|dbj|BAB01160.1| unnamed protein product [Arabidopsis thaliana] gi|34365633|gb|AAQ65128.1| At3g20510 [Arabidopsis thaliana] gi|51971331|dbj|BAD44330.1| unknown protein [Arabidopsis thaliana] gi|51971899|dbj|BAD44614.1| unknown protein [Arabidopsis thaliana] gi|332642868|gb|AEE76389.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 79/93 (84%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYG++LIGGG +G+ KKGS  S AGG GTGLLL+LAGY+SLKAFEKKKNS  
Sbjct: 1  MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A+V++TV AA LT+VM QRY+ T K+MPAG+V 
Sbjct: 61 AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVA 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830734|ref|XP_002883249.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata] gi|297329089|gb|EFH59508.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 79/93 (84%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCF+IPYG++LIGGG +G+ KKGS  S AGG GTGLLL+LAGY+SLKAFEKKKNS  
Sbjct: 1  MHDFCFSIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSSI 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A+V++TV AA LT+VM QRY+ T K+MPAG+V 
Sbjct: 61 AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVA 93

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503384|gb|AFK39758.1| unknown [Lotus japonicus]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 77/93 (82%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYGL+L+GGG  G+  KGS  SL GGV +GLLL++AGY+SL AF K+KNSYF
Sbjct: 1  MHDFCFTIPYGLLLVGGGAFGYIHKGSIPSLLGGVVSGLLLIVAGYISLNAFGKRKNSYF 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A+ +ETVCA  LT VM QRYMETSKVMPAG+V 
Sbjct: 61 ALFLETVCATALTWVMGQRYMETSKVMPAGVVA 93

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403201|ref|NP_564579.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|12321434|gb|AAG50780.1|AC079027_3 unknown protein [Arabidopsis thaliana] gi|18491153|gb|AAL69479.1| unknown protein [Arabidopsis thaliana] gi|20466055|gb|AAM20362.1| unknown protein [Arabidopsis thaliana] gi|21592962|gb|AAM64911.1| unknown [Arabidopsis thaliana] gi|332194465|gb|AEE32586.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 77/93 (82%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+VLAG++SLKAFEKKK S  
Sbjct: 1  MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A ++ETV AA LT VM QR+++T K+MPA +V 
Sbjct: 61 ATLLETVIAAALTFVMGQRFLQTQKIMPAALVA 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847424|ref|XP_002891593.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata] gi|297337435|gb|EFH67852.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 78/93 (83%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+VLAG++SLKAFEKKK S  
Sbjct: 1  MHDFCFTIPYGMLLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSSL 60

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          A +++TV AA LT VM QR+++T K++PAG+V 
Sbjct: 61 ATLLQTVIAAALTFVMGQRFLQTQKIIPAGLVA 93

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	0.807	0.773	0.445	1.3e-15
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	0.807	0.773	0.413	3.8e-14

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/92 (44%), Positives = 49/92 (53%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                        KAFEKKKNS  
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:    61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIV 92
             A+V++TV AA LT+VM QRY+ T K+MPAG+V
Sbjct:    61 AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLV 92

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 38/92 (41%), Positives = 46/92 (50%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                        KAFEKKK S  
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:    61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIV 92
             A ++ETV AA LT VM QR+++T K+MPA +V
Sbjct:    61 ATLLETVIAAALTFVMGQRFLQTQKIMPAALV 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.134   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114        79   0.00091  102 3  11 22  0.46    28
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  111 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.92u 0.11s 8.03t   Elapsed:  00:00:00
  Total cpu time:  7.92u 0.11s 8.03t   Elapsed:  00:00:00
  Start:  Tue May 21 00:12:40 2013   End:  Tue May 21 00:12:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	1e-22
COG5548	105	COG5548, COG5548, Small integral membrane protein	4e-09

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 84.2 bits (209), Expect = 1e-22
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 4  FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIV 63
              I Y  ++  GGI+G+AK GS  SL  G+  G LL    YL        +N  + + 
Sbjct: 1  DHPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLL------SQNQPYGLE 54

Query: 64 IETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
          +  + +AVL  VM  RY++T K MPAG+V 
Sbjct: 55 LALLASAVLAGVMGPRYIKTRKFMPAGLVL 84

This family of short membrane proteins are as yet uncharacterized. Length = 96

>gnl|CDD|227835 COG5548, COG5548, Small integral membrane protein [Function unknown]

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 8  IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETV 67
          I   ++   GG++G+ +K S  SL  GV +GLLL +A YL L      +   + +++ TV
Sbjct: 8  IALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQL------QGQTWGLILATV 61

Query: 68 CAAVLTVVMAQRYMETSKVMPAGI 91
           +A L V  A R + + K +PAG+
Sbjct: 62 VSAALLVFFALRLVRSRKPVPAGL 85

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG4267	110	consensus Predicted membrane protein [Function unk	99.97
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.95
COG5548	105	Small integral membrane protein [Function unknown]	99.86

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=99.97  E-value=6.9e-32  Score=191.17  Aligned_cols=95  Identities=43%  Similarity=0.639  Sum_probs=85.8

Q ss_pred             CccceehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHH-HHHHHHHHHHH
Q 033635            1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK-NSYFAIVIETV-CAAVLTVVMAQ   78 (114)
Q Consensus         1 ~~Dfc~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~-~~~~g~~l~~~-~S~~L~~~mg~   78 (114)
                      |||+|++++|++|++.||+|||.||||+|||+||+.+|++   +||.+++.++|++ +..    +++. +|++|+.+|+.
T Consensus         1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~----~~l~~~s~~L~gvmg~   73 (110)
T KOG4267|consen    1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSL----VALGGTSAALLGVMGQ   73 (110)
T ss_pred             CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCch----hHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999985   5666676777766 543    4566 79999999999


Q ss_pred             HHHhhCCcccchhhccccccchhhhhhc
Q 033635           79 RYMETSKVMPAGIVCPHDRVLSVQNCDR  106 (114)
Q Consensus        79 R~~kt~K~mPaGlva~~~~~~s~~~~~~  106 (114)
                      ||.+|||+||+|+++.    +|+.|.++
T Consensus        74 R~~~s~K~mPaglva~----~s~~m~~~   97 (110)
T KOG4267|consen   74 RFYRSRKIMPAGLVAG----ISLLMTCF   97 (110)
T ss_pred             hhhccCCccchHHHHH----HHHHHHHH
Confidence            9999999999999999    99999887

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.95  E-value=2.3e-29  Score=174.05  Aligned_cols=93  Identities=47%  Similarity=0.727  Sum_probs=84.2

Q ss_pred             ceehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033635            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET   83 (114)
Q Consensus         4 fc~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt   83 (114)
                      ||++++|++++++||++||+||||+|||++|+++|++++.+++++.      +|+++++++++.+|++|+.+|++|+.||
T Consensus         1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~------~~~~~~~~~~l~~s~~L~~~m~~R~~~t   74 (96)
T PF03647_consen    1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL------TNQKWGSELALAISAVLAGVMGYRYIKT   74 (96)
T ss_dssp             HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred             CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh------ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence            7999999999999999999999999999999999999999999873      4667888999999999999999999999


Q ss_pred             CCcccchhhccccccchhhhhhc
Q 033635           84 SKVMPAGIVCPHDRVLSVQNCDR  106 (114)
Q Consensus        84 ~K~mPaGlva~~~~~~s~~~~~~  106 (114)
                      +|+||+|++++    +|..|..+
T Consensus        75 ~k~~Pagl~~~----~s~~~~~~   93 (96)
T PF03647_consen   75 RKFMPAGLMAL----LSGAMLAF   93 (96)
T ss_dssp             SSSCCCHHHHH----HHHHHHHH
T ss_pred             CCCccHHHHHH----HHHHHHHH
Confidence            99999999999    99998765

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=99.86  E-value=5.2e-22  Score=138.29  Aligned_cols=83  Identities=35%  Similarity=0.600  Sum_probs=78.3

Q ss_pred             ehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033635            6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSK   85 (114)
Q Consensus         6 ~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~K   85 (114)
                      -.+.++.|..+||+|||.+|+|++||++|+.+|+.+.+++|+.++      ++.+|++.++..|++|....+.|++||||
T Consensus         6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRK   79 (105)
T COG5548           6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILATVVSAALLVFFALRLVRSRK   79 (105)
T ss_pred             HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehHHHHHHHHHHhcchhccccCC
Confidence            368899999999999999999999999999999999999999864      66789999999999999999999999999


Q ss_pred             cccchhhcc
Q 033635           86 VMPAGIVCP   94 (114)
Q Consensus        86 ~mPaGlva~   94 (114)
                      |||++++++
T Consensus        80 pvP~~Lt~l   88 (105)
T COG5548          80 PVPAGLTTL   88 (105)
T ss_pred             CcchHHHHH
Confidence            999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	2e-16
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	3e-15

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens} Length = 121

 Score = 68.6 bits (167), Expect = 2e-16
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +    F   Y  ++  GGI+G+ K GS  SLA G+  G L  L  Y              
Sbjct: 17  VPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQL-------SQDPR 69

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVC 93
            + +    +  L  +M  R+  + K MPAG++ 
Sbjct: 70  NVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIA 102

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 65.1 bits (158), Expect = 3e-15
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 6  FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65
              Y  ++  G I G+ ++G   SL  G+  G L     Y          N    + + 
Sbjct: 13 IGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRV-------SNDKRDVKVS 65

Query: 66 TVCAAVLTVVMAQRYMETSKVMPAGIVC 93
             A  L  +M  R+  + K+MPAG+V 
Sbjct: 66 LFTAFFLATIMGVRFKRSKKIMPAGLVA 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.9
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.88

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.90  E-value=6e-29  Score=174.96  Aligned_cols=92  Identities=27%  Similarity=0.468  Sum_probs=83.1

Q ss_pred             eehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033635            5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETS   84 (114)
Q Consensus         5 c~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt~   84 (114)
                      +++++|++++++||++||+|+||+|||+||+.+|+++.+++|   +.|+|++    ++++++++|++|+++|++||.|||
T Consensus        12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~~~~---~~~~~~~----~~~l~l~~S~~L~~~m~~R~~~t~   84 (108)
T 2loo_A           12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAY---RVSNDKR----DVKVSLFTAFFLATIMGVRFKRSK   84 (108)
Confidence            489999999999999999999999999999999998755554   4455542    888999999999999999999999


Q ss_pred             Ccccchhhccccccchhhhhhcc
Q 033635           85 KVMPAGIVCPHDRVLSVQNCDRW  107 (114)
Q Consensus        85 K~mPaGlva~~~~~~s~~~~~~~  107 (114)
                      |+||+|++++    +|..|++|.
T Consensus        85 K~mPaGl~a~----lS~~m~~~y  103 (108)
T 2loo_A           85 KIMPAGLVAG----LSLMMILRL  103 (108)
Confidence            9999999999    999999874

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.88  E-value=7e-28  Score=172.52  Aligned_cols=93  Identities=29%  Similarity=0.504  Sum_probs=82.9

Q ss_pred             ceehHHHHHHHHhhhhhhhhhcCChhhhHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033635            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET   83 (114)
Q Consensus         4 fc~~~~yg~Ll~~GGi~GYvk~gS~~SLiaG~~~G~ll~~ag~l~~~~~~~~~~~~~g~~l~~~~S~~L~~~mg~R~~kt   83 (114)
                      -+++++||+|+++||++||+|+||+|||+||+.+|+++.+++|   +.|+|+++    .++++++|++|+++|+.||.||
T Consensus        20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a~---~~~~~~~~----~~l~l~~S~~L~~~mg~R~~~t   92 (121)
T 2los_A           20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAY---QLSQDPRN----VWVFLATSGTLAGIMGMRFYHS   92 (121)
Confidence            3689999999999999999999999999999999998766555   45666543    4678899999999999999999


Q ss_pred             CCcccchhhccccccchhhhhhcc
Q 033635           84 SKVMPAGIVCPHDRVLSVQNCDRW  107 (114)
Q Consensus        84 ~K~mPaGlva~~~~~~s~~~~~~~  107 (114)
                      +|+||+|++++    +|++|++|.
T Consensus        93 ~K~mPaGlva~----lS~~m~~~~  112 (121)
T 2los_A           93 GKFMPAGLIAG----ASLLMVAKV  112 (121)
Confidence            99999999999    999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00