Citrus Sinensis ID: 033658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megdifsgigngtqVDGKVLQTFRKSFGQVQDILDQNRLLINEINqnheskvpdnltRNVGLIKELNNNIRRVVSLYADLSSSFarsvesssegesAAALRSDGKASQKRIRSG
Flexible Loop (DISEMBL)
megdifsgigngtqvdGKVLQTFRKSFGQVQDILDQNRLLINEinqnheskvpdnlTRNVGLIKELNNNIRRVVSLYADLSSSFARsvesssegesaaalrsdgkasqkrirsg
Low Complexity Region (SEG)
MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLsssfarsvesssegesaaalrsDGKASQKRIRSG
Disordered region (IsUnstruct)
*******GIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNH**KVPDNLTRNVGLIKELNNNIRRVVSLYADL**********************************
Disordered Region (DISOPRED)
*******************LQTFRKSFGQVQDILDQNRLLINEIN******V**NLTRNVGLIKELNNNIRRVVSLYADLSS********************************
Disordered Region (DISEMBL)
MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLS*********************************
Disordered Region (DISPRO)
*************QVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSSF******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q570U6	114	Protein ELF4-LIKE 4 OS=Ar	yes	no	1.0	1.0	0.771	1e-44
Q94BS8	119	Protein ELF4-LIKE 2 OS=Ar	no	no	1.0	0.957	0.747	3e-42
Q8S8F5	109	Protein ELF4-LIKE 3 OS=Ar	no	no	0.947	0.990	0.652	6e-35
O04211	111	Protein EARLY FLOWERING 4	no	no	0.614	0.630	0.471	1e-14
O80877	125	Protein ELF4-LIKE 1 OS=Ar	no	no	0.649	0.592	0.486	3e-14

>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 99/114 (86%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+ SG G+   +DGK+LQ+F+KSF  VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLIKELNNNIRRV SLY DLS SFARSV++SSEGES+  L+SDGKA+QKR RSG
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 97/115 (84%), Gaps = 1/115 (0%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD++SG G   Q+DGK+LQ F+KSF QVQDILDQNRLLINEINQNHESK  D+L RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKA-SQKRIRSG 114
           GLI+ELNNNIR V SLY DLS SFARSV++SSEGES   L+SDGKA +QKR RSG
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1

 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 94/115 (81%), Gaps = 7/115 (6%)

Query: 1   MEGDIFS-GIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
           MEGD  S  +G+G Q+DGK+LQTF KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 60  VGLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           VGLI+ELNNN+RRV  LY DLS++F++S+E+SSEG+S     S+G+ + +RIR  
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDS-----SEGRGN-RRIRPA 109

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 55/70 (78%)

Query: 16 DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75
          D  + +   ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct: 22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 76 LYADLSSSFA 85
          +Y+DL++SF+
Sbjct: 82 MYSDLNTSFS 91

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. Required for responsiveness to continuous red, by regulating phytochrome B (phyB) signaling (including during seedling de-etiolation) and gene expression. Mediates both entrainment to an environmental cycle and circadian rhythm sustainability under constant conditions. Controls flowering time. Necessary for light-induced expression of both CCA1 and LHY.

Arabidopsis thaliana (taxid: 3702)

>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 52/74 (70%)

Query: 16  DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75
           D +V  T    F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI E+N NI +V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 76  LYADLSSSFARSVE 89
           +Y+DLS +FA+  +
Sbjct: 94  IYSDLSLNFAKKFD 107

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
217793731	114	ELF4-like protein [Citrus sinensis]	1.0	1.0	1.0	1e-57
255560649	114	conserved hypothetical protein [Ricinus	1.0	1.0	0.833	1e-48
225442150	114	PREDICTED: protein ELF4-LIKE 4-like isof	1.0	1.0	0.833	6e-48
217793794	114	ELF4-like protein [Gossypium arboreum]	1.0	1.0	0.842	9e-48
224070819	114	predicted protein [Populus trichocarpa]	1.0	1.0	0.824	2e-47
224054114	114	predicted protein [Populus trichocarpa]	1.0	1.0	0.824	2e-47
225444780	114	PREDICTED: protein ELF4-LIKE 4 [Vitis vi	0.982	0.982	0.812	3e-46
356565831	114	PREDICTED: protein ELF4-LIKE 4-like isof	0.982	0.982	0.785	6e-45
224069114	114	predicted protein [Populus trichocarpa]	0.982	0.982	0.767	9e-45
351720683	114	uncharacterized protein LOC100306717 [Gl	0.982	0.982	0.776	4e-44

>gi|217793731|gb|ACK56109.1| ELF4-like protein [Citrus sinensis]

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV
Sbjct: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG
Sbjct: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560649|ref|XP_002521338.1| conserved hypothetical protein [Ricinus communis] gi|223539416|gb|EEF41006.1| conserved hypothetical protein [Ricinus communis]

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 108/114 (94%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+FSGIGNGTQVDGKVLQT +KSF QVQDILDQNRLLINEINQNHESK+PDNLTRNV
Sbjct: 1   MEGDLFSGIGNGTQVDGKVLQTVQKSFMQVQDILDQNRLLINEINQNHESKIPDNLTRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLI+ELNNNIRRVV LYADLS++F+RS+E+SSEGES+  L+S+GK +QKRIRSG
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTNFSRSMEASSEGESSGILKSNGKGNQKRIRSG 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442150|ref|XP_002275459.1| PREDICTED: protein ELF4-LIKE 4-like isoform 2 [Vitis vinifera] gi|225442152|ref|XP_002275438.1| PREDICTED: protein ELF4-LIKE 4-like isoform 1 [Vitis vinifera]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 104/114 (91%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           M+GDIFSGIGNGTQVD KVLQTF KSF QVQ++LDQNRLLINEINQNHESK+PDNL RNV
Sbjct: 1   MDGDIFSGIGNGTQVDSKVLQTFHKSFVQVQNLLDQNRLLINEINQNHESKIPDNLNRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLI+ELNNNIRRVV LY+DLSSSFA+SVE+S E ESA  L+SDGKASQKRIR G
Sbjct: 61  GLIRELNNNIRRVVDLYSDLSSSFAKSVEASLEAESAGTLKSDGKASQKRIRYG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793794|gb|ACK56111.1| ELF4-like protein [Gossypium arboreum]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 102/114 (89%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGDI SG GNG QVDGKVLQTF+KSF QVQDILDQNRLLINEINQNHESK+PDNL+RNV
Sbjct: 1   MEGDICSGFGNGGQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLIKELNNNIRRV  LYADLSSSF RS+E+SSEG+SA     DGKASQKRIRSG
Sbjct: 61  GLIKELNNNIRRVADLYADLSSSFTRSMEASSEGDSAGMYEPDGKASQKRIRSG 114

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070819|ref|XP_002303249.1| predicted protein [Populus trichocarpa] gi|222840681|gb|EEE78228.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 104/114 (91%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+F G+ NG QVDGKVLQTF+KSF QVQDILDQNRLLINEINQNHESK+PDNLTRNV
Sbjct: 1   MEGDLFPGLSNGNQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLTRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLIKELNNNIRRVV LYADLSS+F RS+E SSEGES+  L+S+GKA+ KRIRSG
Sbjct: 61  GLIKELNNNIRRVVDLYADLSSNFTRSMEPSSEGESSGILKSNGKANSKRIRSG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054114|ref|XP_002298099.1| predicted protein [Populus trichocarpa] gi|222845357|gb|EEE82904.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 105/114 (92%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+FSG+ NG QVDGKVLQTF+KSF QVQDILDQNRLLINEINQNHESK+PDNLTRNV
Sbjct: 1   MEGDLFSGLSNGNQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLTRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
           GLIKELNNNIRRVV LYADLS++F RS+E SSEGES+  L+S+GKA+ KRIRSG
Sbjct: 61  GLIKELNNNIRRVVDLYADLSNNFTRSMEPSSEGESSGILKSNGKANSKRIRSG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444780|ref|XP_002279914.1| PREDICTED: protein ELF4-LIKE 4 [Vitis vinifera] gi|297738586|emb|CBI27831.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 103/112 (91%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD FSG+GNGTQ+DGKVLQTF+KSF QVQ+ILDQNRLLINEINQNHESK+PDNL+RNV
Sbjct: 1   MEGDTFSGLGNGTQIDGKVLQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIR 112
           GLI+ELNNNIRRVV LYADLS+SF +SV+ SSEG+S+ ALRSDGKA  KR R
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSVDGSSEGDSSGALRSDGKAGHKRNR 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565831|ref|XP_003551140.1| PREDICTED: protein ELF4-LIKE 4-like isoform 1 [Glycine max] gi|356565833|ref|XP_003551141.1| PREDICTED: protein ELF4-LIKE 4-like isoform 2 [Glycine max] gi|356565835|ref|XP_003551142.1| PREDICTED: protein ELF4-LIKE 4-like isoform 3 [Glycine max]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 102/112 (91%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD FSG+GNGTQ+D K+LQTF+KSF QVQ+ILDQNR+LINEINQNHESKVPDNL+RNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKILQTFKKSFVQVQNILDQNRVLINEINQNHESKVPDNLSRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIR 112
           GLI+ELNNNIRRVV LYADLSSSF +S+E SSEG+S+ A++SDGKA  KR R
Sbjct: 61  GLIRELNNNIRRVVDLYADLSSSFTKSMEVSSEGDSSGAVKSDGKAGHKRHR 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069114|ref|XP_002326278.1| predicted protein [Populus trichocarpa] gi|222833471|gb|EEE71948.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 103/112 (91%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD FSG+GNGTQ+DGK+LQTF+K+F QVQ+ILDQNRLLINEINQNHESK+PDNL+RNV
Sbjct: 1   MEGDTFSGLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIR 112
           GLI+ELNNNIRRVV LYADLS+SF +S+++SSEG+S+ AL+SDGK   KR R
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNR 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720683|ref|NP_001235393.1| uncharacterized protein LOC100306717 [Glycine max] gi|255629363|gb|ACU15026.1| unknown [Glycine max]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 101/112 (90%)

Query: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD FSG+GNGTQ+D K+L TF+KSF QVQ+ILDQNR+LINEINQNHESKVPDNL+RNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKILLTFKKSFVQVQNILDQNRVLINEINQNHESKVPDNLSRNV 60

Query: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIR 112
           GLI+ELNNNIRRVV LYADLSSSF +S+E SSEG+S+ A++SDGKA  KR R
Sbjct: 61  GLIRELNNNIRRVVDLYADLSSSFTKSMEVSSEGDSSGAVKSDGKAGHKRHR 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:505006126	114	ELF4-L4 "AT1G17455" [Arabidops	1.0	1.0	0.640	4.1e-33
TAIR|locus:2030165	119	ELF4-L2 "AT1G72630" [Arabidops	1.0	0.957	0.617	5.4e-31
TAIR|locus:505006240	109	ELF4-L3 "AT2G06255" [Arabidops	0.701	0.733	0.753	8.2e-28
TAIR|locus:2061226	111	ELF4 "AT2G40080" [Arabidopsis	0.570	0.585	0.476	1e-13
TAIR|locus:2045673	125	ELF4-L1 "AT2G29950" [Arabidops	0.570	0.52	0.507	2.1e-13

TAIR|locus:505006126 ELF4-L4 "AT1G17455" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 73/114 (64%), Positives = 80/114 (70%)

Query:     1 MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
             MEGD+ SG G+   +DGK+LQ+F+KSF  VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct:     1 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query:    61 GLIKELNNNIRRVVSLYADLXXXXXXXXXXXXXXXXXXXXXXDGKASQKRIRSG 114
             GLIKELNNNIRRV SLY DL                      DGKA+QKR RSG
Sbjct:    61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:2030165 ELF4-L2 "AT1G72630" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 71/115 (61%), Positives = 79/115 (68%)

Query:     1 MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
             MEGD++SG G   Q+DGK+LQ F+KSF QVQDILDQNRLLINEINQNHESK  D+L RNV
Sbjct:     5 MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query:    61 GLIKELNNNIRRVVSLYADLXXXXXXXXXXXXXXXXXXXXXXDGKAS-QKRIRSG 114
             GLI+ELNNNIR V SLY DL                      DGKA+ QKR RSG
Sbjct:    65 GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:505006240 ELF4-L3 "AT2G06255" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 61/81 (75%), Positives = 69/81 (85%)

Query:     1 MEGDIFSGI-GNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
             MEGD  S + G+G Q+DGK+LQTF KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct:     1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query:    60 VGLIKELNNNIRRVVSLYADL 80
             VGLI+ELNNN+RRV  LY DL
Sbjct:    61 VGLIRELNNNVRRVAHLYVDL 81

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061226 ELF4 "AT2G40080" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/65 (47%), Positives = 50/65 (76%)

Query:    16 DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75
             D  + +   ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct:    22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query:    76 LYADL 80
             +Y+DL
Sbjct:    82 MYSDL 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009648 "photoperiodism" evidence=IEP;IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

TAIR|locus:2045673 ELF4-L1 "AT2G29950" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query:    16 DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75
             D +V  T    F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI E+N NI +V+ 
Sbjct:    34 DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query:    76 LYADL 80
             +Y+DL
Sbjct:    94 IYSDL 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.136   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114        92   0.00091  102 3  11 22  0.39    30
                                                     29  0.40    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  431 (46 KB)
  Total size of DFA:  80 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.78u 0.13s 10.91t   Elapsed:  00:00:00
  Total cpu time:  10.79u 0.13s 10.92t   Elapsed:  00:00:00
  Start:  Thu May  9 22:26:58 2013   End:  Thu May  9 22:26:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q570U6	EF4L4_ARATH	No assigned EC number	0.7719	1.0	1.0	yes	no
Q94BS8	EF4L2_ARATH	No assigned EC number	0.7478	1.0	0.9579	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam07011	89	pfam07011, DUF1313, Protein of unknown function (D	4e-41

>gnl|CDD|191668 pfam07011, DUF1313, Protein of unknown function (DUF1313)

 Score =  130 bits (329), Expect = 4e-41
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query: 12 GTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIR 71
              DGKV QTF++SF QVQ +LDQNRLLI EINQNHES++PDNL+RNVGLI+ELN NI 
Sbjct: 1  AAGEDGKVWQTFQRSFVQVQSVLDQNRLLIQEINQNHESRIPDNLSRNVGLIRELNGNIS 60

Query: 72 RVVSLYADLSSSFARSVESSSEGES 96
          RVVSLY+DLS SF+RSV +S EG+S
Sbjct: 61 RVVSLYSDLSGSFSRSVRASREGDS 85

This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	100.0
PF05030	65	SSXT: SSXT protein (N-terminal region); InterPro:	88.58
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	85.3
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	80.5

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=100.00  E-value=4.7e-55  Score=308.06  Aligned_cols=87  Identities=76%  Similarity=1.057  Sum_probs=85.0

Q ss_pred             cccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHHHHhhhhhhhhhhhcccC
Q 033658           13 TQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSSFARSVESSS   92 (114)
Q Consensus        13 ~~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~sF~~~~~~~s   92 (114)
                      ++||+|+|+||+|+|+|||+||||||+||+|||||||||+||+|+|||+||||||+||+|||+||+|||++|+++|++++
T Consensus         1 ~~~d~~~~~tf~~sF~qVQ~iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~sFs~~~~~~~   80 (87)
T PF07011_consen    1 EQGDGKVWQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDLYSDLSSSFSKSVEQSS   80 (87)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccc
Q 033658           93 EGESAAA   99 (114)
Q Consensus        93 eg~s~g~   99 (114)
                      +|+++|+
T Consensus        81 ~g~~~~~   87 (87)
T PF07011_consen   81 EGDSSGT   87 (87)
T ss_pred             ccCcCCC
Confidence            9999985

The function of this family is unknown.

>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []

Probab=88.58  E-value=0.43  Score=32.43  Aligned_cols=39  Identities=28%  Similarity=0.438  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhHHHHHHHhhccc-cCCCCcchhhHHHHHHHhhhH
Q 033658           28 GQVQDILDQNRLLINEINQNHE-SKVPDNLTRNVGLIKELNNNI   70 (114)
Q Consensus        28 ~qVQ~iLDqNR~LI~EINqNHe-Sr~PdnL~RNV~LIrELN~NI   70 (114)
                      .+||.+||.|.-||+-|.+++. .|.+|    =|..-+-|..|+
T Consensus         9 ~~IQk~LdEN~~LI~~I~e~qn~Gr~~E----c~qyq~~LhrNL   48 (65)
T PF05030_consen    9 EQIQKMLDENDQLIQCIQEYQNKGRAQE----CVQYQQILHRNL   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHH
Confidence            5799999999999999999875 33333    233445555554

The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=85.30  E-value=1.1  Score=32.21  Aligned_cols=37  Identities=35%  Similarity=0.491  Sum_probs=27.9

Q ss_pred             CcchhhHHHHHHHhh--------hHHHHHHHHhhhhhhhhhhhcc
Q 033658           54 DNLTRNVGLIKELNN--------NIRRVVSLYADLSSSFARSVES   90 (114)
Q Consensus        54 dnL~RNV~LIrELN~--------NI~rVv~LYsdLS~sF~~~~~~   90 (114)
                      +=|-+|=.||.|+|.        |+.|=|.|-++|..+.++.|+-
T Consensus        20 ~iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~l   64 (87)
T PF07011_consen   20 SILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDL   64 (87)
T ss_pred             HHHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHH
Confidence            346678888888885        4778888888888888877754

The function of this family is unknown.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=80.50  E-value=1.7  Score=28.72  Aligned_cols=22  Identities=23%  Similarity=0.609  Sum_probs=18.2

Q ss_pred             HHHHhhhHHHHHHHHhhhhhhh
Q 033658           63 IKELNNNIRRVVSLYADLSSSF   84 (114)
Q Consensus        63 IrELN~NI~rVv~LYsdLS~sF   84 (114)
                      |.+|+.||++|++||.-.|-.+
T Consensus        30 ve~i~envk~ll~lYE~Vs~~i   51 (55)
T PF05377_consen   30 VEKIEENVKDLLSLYEVVSNQI   51 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            5678999999999999877543

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00