Citrus Sinensis ID: 033667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDDSIITQLPAVSASSPIHHRR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHEcccccccccccccccc
Coil and Loop (DISEMBL)
MMIEEWLNHDMLMKVALFGVVQALVYLILSKSssifsknkkmirsssssfkpaRSVSIRRMLAVLqdmpsggepspspkdmqqsptpaptgdiddsiitqlpavsasspihhrr
Flexible Loop (DISEMBL)
MMIEEWLNHDMLMKVALFGVVQALVYLILSKsssifsknkkmirsssssfkparsVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDDSIITqlpavsasspihhrr
Low Complexity Region (SEG)
MMIEEWLNHDMLMKVALFGVVQALVYLILsksssifsknkkMIRsssssFKPARSVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDDSIITQLPAVSASSPIHHRR
Disordered region (IsUnstruct)
***EEWLNHDMLMKVALFGVVQALVYLILSK***********************************************************************************
Disordered Region (DISOPRED)
***********LMKVALFGVVQALVYLILSKSSS**********************SIRRMLAVLQDM******************************TQLPAVSA********
Disordered Region (DISEMBL)
MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSK****************SVSIRRMLAVLQD***********************GDIDDSIITQLPAV**********
Disordered Region (DISPRO)
*****WLNHDMLMKVALFGVVQALVYLILSK***************************RR*LAVLQDMP**************************SIIT**P************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDDSIITQLPAVSASSPIHHRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
255542255	88	conserved hypothetical protein [Ricinus	0.719	0.931	0.630	7e-20
224104523	90	predicted protein [Populus trichocarpa]	0.701	0.888	0.647	4e-17
388500352	81	unknown [Medicago truncatula]	0.561	0.790	0.735	5e-17
225450289	95	PREDICTED: uncharacterized protein LOC10	0.631	0.757	0.666	5e-17
224121074	98	predicted protein [Populus trichocarpa]	0.780	0.908	0.569	2e-16
297848838	90	hypothetical protein ARALYDRAFT_887746 [	0.596	0.755	0.642	2e-16
224078642	83	predicted protein [Populus trichocarpa]	0.640	0.879	0.679	6e-16
225435433	94	PREDICTED: uncharacterized protein LOC10	0.798	0.968	0.473	1e-13
297746310	119	unnamed protein product [Vitis vinifera]	0.798	0.764	0.473	1e-13
147834810	94	hypothetical protein VITISV_002756 [Viti	0.798	0.968	0.473	1e-13

>gi|255542255|ref|XP_002512191.1| conserved hypothetical protein [Ricinus communis] gi|223548735|gb|EEF50225.1| conserved hypothetical protein [Ricinus communis]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 66/92 (71%), Gaps = 10/92 (10%)

Query: 1  MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRR 60
          MMI E    DML+KVA+F +VQALVY+ILSKSS+IFS   K     SSSFKPARSVSIRR
Sbjct: 1  MMIMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK----RSSSFKPARSVSIRR 56

Query: 61 MLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGD 92
           LA LQD+P+ GE SPSPK+      PA T D
Sbjct: 57 FLAALQDLPASGELSPSPKN------PASTQD 82

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104523|ref|XP_002313466.1| predicted protein [Populus trichocarpa] gi|222849874|gb|EEE87421.1| predicted protein [Populus trichocarpa]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 63/85 (74%), Gaps = 5/85 (5%)

Query: 10 DMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMP 69
          D+L+KVA+F +VQ LVYLILSKSS+IFSK        SSSFK ARSVSIRR+LAVLQD+P
Sbjct: 7  DVLLKVAMFVIVQGLVYLILSKSSNIFSKTND---KRSSSFKTARSVSIRRILAVLQDLP 63

Query: 70 SGGEPSP-SPKDMQ-QSPTPAPTGD 92
           GGE SP S K  Q QSPT   + D
Sbjct: 64 PGGELSPASSKSTQVQSPTVEKSED 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500352|gb|AFK38242.1| unknown [Medicago truncatula]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 55/68 (80%), Gaps = 4/68 (5%)

Query: 10 DMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMP 69
          DML+KVA+F +VQALVYLILS SS+IFSKN K     S+SFKPARSVSIRRMLA L D P
Sbjct: 7  DMLLKVAMFVLVQALVYLILSNSSNIFSKNIK----RSNSFKPARSVSIRRMLAYLSDFP 62

Query: 70 SGGEPSPS 77
            GEPSPS
Sbjct: 63 PEGEPSPS 70

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450289|ref|XP_002271097.1| PREDICTED: uncharacterized protein LOC100266637 [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 59/78 (75%), Gaps = 6/78 (7%)

Query: 10 DMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMP 69
          DM++KV +F +VQALVYLILSKSS+IFSKN K     S  FKPARSVSIRR+LA L D+P
Sbjct: 9  DMVLKVGMFVLVQALVYLILSKSSNIFSKNPK----RSHRFKPARSVSIRRVLACLADLP 64

Query: 70 SGGE--PSPSPKDMQQSP 85
           GGE  PSPSPK  Q  P
Sbjct: 65 PGGELSPSPSPKGPQLLP 82

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121074|ref|XP_002330897.1| predicted protein [Populus trichocarpa] gi|222872719|gb|EEF09850.1| predicted protein [Populus trichocarpa]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 65/93 (69%), Gaps = 4/93 (4%)

Query: 2  MIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRM 61
          M+ E    DML+KV +F  VQALVY+ILSKSS+IFSK  +  R  SSSFK ARSVSI+R+
Sbjct: 1  MMMESSTGDMLLKVGVFVAVQALVYVILSKSSNIFSKTHRERR--SSSFKIARSVSIQRI 58

Query: 62 LAVLQDMPSGGEPSPSPKDMQ--QSPTPAPTGD 92
          LA LQD+P+GGE SP+       QSPT   + D
Sbjct: 59 LAALQDLPAGGELSPASSKTTPMQSPTVERSKD 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848838|ref|XP_002892300.1| hypothetical protein ARALYDRAFT_887746 [Arabidopsis lyrata subsp. lyrata] gi|297338142|gb|EFH68559.1| hypothetical protein ARALYDRAFT_887746 [Arabidopsis lyrata subsp. lyrata]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 56/70 (80%), Gaps = 2/70 (2%)

Query: 9  HDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDM 68
            MLMKV++F ++Q LVYLILSKSS +FS +K M R+ S  F+ ARS+SIRR+LAVLQDM
Sbjct: 6  EGMLMKVSIFALIQGLVYLILSKSSRVFSTSKTMKRAYS--FRSARSISIRRILAVLQDM 63

Query: 69 PSGGEPSPSP 78
          P+GGE SPS 
Sbjct: 64 PAGGEMSPSA 73

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078642|ref|XP_002335750.1| predicted protein [Populus trichocarpa] gi|222834668|gb|EEE73131.1| predicted protein [Populus trichocarpa]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 60/78 (76%), Gaps = 5/78 (6%)

Query: 11 MLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMPS 70
          +L+KVA+F +VQ LVYLILSKSS+IFSK        SSSFK ARSVSIRR+LAVLQD+P 
Sbjct: 1  VLLKVAMFVIVQGLVYLILSKSSNIFSKTND---KRSSSFKTARSVSIRRILAVLQDLPP 57

Query: 71 GGEPSP-SPKDMQ-QSPT 86
          GGE SP S K  Q QSPT
Sbjct: 58 GGELSPASSKSTQVQSPT 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435433|ref|XP_002285414.1| PREDICTED: uncharacterized protein LOC100262174 [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 1  MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRR 60
          M   E    DML+KV +F +VQ LV+LIL  SS +FSKNK      S SFKPARS SIRR
Sbjct: 1  MAFMEGSAADMLIKVVVFALVQGLVFLILKSSSDVFSKNKM----RSLSFKPARSASIRR 56

Query: 61 MLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDD 95
          +LAV+ D+P+GGE S        +P+       D+
Sbjct: 57 ILAVISDLPAGGEVSSRSSRGLLAPSTGEYATADE 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746310|emb|CBI16366.3| unnamed protein product [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 1   MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRR 60
           M   E    DML+KV +F +VQ LV+LIL  SS +FSKNK      S SFKPARS SIRR
Sbjct: 26  MAFMEGSAADMLIKVVVFALVQGLVFLILKSSSDVFSKNKM----RSLSFKPARSASIRR 81

Query: 61  MLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDD 95
           +LAV+ D+P+GGE S        +P+       D+
Sbjct: 82  ILAVISDLPAGGEVSSRSSRGLLAPSTGEYATADE 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834810|emb|CAN70550.1| hypothetical protein VITISV_002756 [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 1  MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRR 60
          M   E    DML+KV +F +VQ LV+LIL  SS +FSKNK      S SFKPARS SIRR
Sbjct: 1  MAFMEGSAADMLIKVVVFALVQVLVFLILKSSSDVFSKNKM----RSLSFKPARSASIRR 56

Query: 61 MLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDD 95
          +LAV+ D+P+GGE S        +P+       D+
Sbjct: 57 ILAVISDLPAGGEVSSRSSRGLLAPSTGEYATADE 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:505006102	89	AT1G05575 "AT1G05575" [Arabido	0.570	0.730	0.552	5.6e-13
TAIR|locus:505006283	95	AT2G31945 "AT2G31945" [Arabido	0.631	0.757	0.5	1.3e-11

TAIR|locus:505006102 AT1G05575 "AT1G05575" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 37/67 (55%), Positives = 45/67 (67%)

Query:    11 MLMKVALFGVVQALVYLILXXXXXXXXXXXXMIRXXXXXFKPARSVSIRRMLAVLQDMPS 70
             MLMKV++F ++Q LVYLIL            M R     F+ ARS+SIRR+LAVLQDMP+
Sbjct:     8 MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYS--FRSARSISIRRILAVLQDMPA 65

Query:    71 GGEPSPS 77
             GGE SPS
Sbjct:    66 GGEMSPS 72

GO:0003674 "molecular_function" evidence=ND

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:505006283 AT2G31945 "AT2G31945" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/74 (50%), Positives = 44/74 (59%)

Query:    11 MLMKVALFGVVQALVYLILXXXXXXXXXXXXMIRXXXXXFKPARSVSIRRMLAVLQDMPS 70
             MLMKVALF +VQ LVYLIL            + R     F+P RSVSIRR+LA LQD+P+
Sbjct:     8 MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYS--FRPMRSVSIRRILAALQDIPA 65

Query:    71 GGEPSPSPKDMQQS 84
             G + SPS      S
Sbjct:    66 GDDMSPSSNGSSSS 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114        97   0.00091  102 3  11 22  0.49    29
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  103 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.44u 0.08s 15.52t   Elapsed:  00:00:01
  Total cpu time:  15.45u 0.08s 15.53t   Elapsed:  00:00:01
  Start:  Thu May  9 22:33:41 2013   End:  Thu May  9 22:33:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00