Citrus Sinensis ID: 033677

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQSACVGSSSRH
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccccccccccccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccEEEEEEcEEEEccccccEEEEcccccEEEEEccHHHHHHHcccccccccEEEEEcccccEEEEEEEcccccccccccccEEEEEEccHHHcccccccccccc
Coil and Loop (DISEMBL)
mfrchpkskdgrhhlvpvndvvfsplsrgafvtgdnegyvaAWDAQSRRRlfelprfsnsvaslsynhggqLLAVASSCtyqeatvieeppqifIIRIDDiqqqsacvgsssrh
Flexible Loop (DISEMBL)
mfrchpkskdgrhhlvpvNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQSACVGSSSRH
Low Complexity Region (SEG)
MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPqifiiriddiqqqSACVGSSSRH
Disordered region (IsUnstruct)
*************HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQ************
Disordered Region (DISOPRED)
MFRCHP*SKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI****************
Disordered Region (DISEMBL)
MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQ************
Disordered Region (DISPRO)
MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQ***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQSACVGSSSRH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q54DM1	331	Mitotic checkpoint protei	yes	no	0.842	0.290	0.402	2e-13
Q9YGY3	330	Mitotic checkpoint protei	N/A	no	0.894	0.309	0.310	1e-10
Q5RB58	328	Mitotic checkpoint protei	yes	no	0.894	0.310	0.310	2e-10
O43684	328	Mitotic checkpoint protei	yes	no	0.894	0.310	0.310	2e-10
Q9WVA3	326	Mitotic checkpoint protei	yes	no	0.894	0.312	0.310	2e-10
Q1JQB2	326	Mitotic checkpoint protei	yes	no	0.894	0.312	0.310	2e-10
O42860	320	Mitotic checkpoint protei	yes	no	0.710	0.253	0.361	8e-08
P40066	365	Nucleoporin GLE2 OS=Sacch	yes	no	0.842	0.263	0.298	3e-07
Q38942	349	Rae1-like protein At1g806	no	no	0.736	0.240	0.292	0.0001
P41838	352	Poly(A)+ RNA export prote	no	no	0.719	0.232	0.277	0.0001

>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH  ++ G   + PVN + F+P   G F TG  +  V  WD  +R+RL  L  +  S+
Sbjct: 226 FKCHRLTESGVDVVYPVNCIAFNP-HYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSI 284

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
           +S+S+N  G +LAVASS T++E      P QIFI  I
Sbjct: 285 SSMSFNTDGNILAVASSYTFEEGEKDHPPDQIFIHNI 321

Involved in cell cycle checkpoint enforcement.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 1/103 (0%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH   ++    + PVN V F  L    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct: 227 FKCHRLKENNIEQIYPVNAVSFHNL-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 285

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
           ASL++++ G  LA+A+S  Y+   +      I+I ++ D + +
Sbjct: 286 ASLAFSNDGSTLAIAASYMYEMDDIDHPEDAIYIRQVTDAETK 328

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Plays a role in the kinetochore-mediated mitotic checkpoint, which delays anaphase onset until all chromosomes have attached properly to the mitotic spindle. Required to establish and maintain spindle checkpoint arrest in eggs.

Xenopus laevis (taxid: 8355)

>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH   ++    + PVN + F  +    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
           ASL++++ G  LA+ASS  Y+          IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Pongo abelii (taxid: 9601)

>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH   ++    + PVN + F  +    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
           ASL++++ G  LA+ASS  Y+          IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Homo sapiens (taxid: 9606)

>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH   ++    + PVN + F  +    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
           ASL++++ G  LA+ASS  Y+          IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1 (By similarity). Regulates chromosome segregation during oocyte meiosis.

Mus musculus (taxid: 10090)

>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH   ++    + PVN + F  +    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
           ASL++++ G  LA+ASS  Y+          IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Bos taurus (taxid: 9913)

>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH + +     + PVND+ F P+ +    T   +G VA WD Q R+RL  L     ++
Sbjct: 220 FKCHRQIQKDYDIVYPVNDLKFHPIHQ-TLATAGGDGVVAFWDIQVRKRLRVLNPSKINI 278

Query: 62  ASLSYNHGGQLLAVASSCTYQEA 84
           +S+S+N  G +LA+A +C  +EA
Sbjct: 279 SSISFNVDGSMLAIA-TCAQEEA 300

Involved in cell cycle checkpoint enforcement. Involved in recruitment of checkpoint proteins bub1 and mad3 to the kinetochores, ensuring correct spindle checkpoint function.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE2 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 2   FRCHPKSK-------DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL 54
           F+CH ++        +G+  + PVN + F PL  G FVT   +G    WD   R RL   
Sbjct: 249 FKCHRQTNPNRAPGSNGQSLVYPVNSIAFHPL-YGTFVTAGGDGTFNFWDKNQRHRLKGY 307

Query: 55  PRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
           P    S+   S+N  G + A A S  + +  +   P    +IR+
Sbjct: 308 PTLQASIPVCSFNRNGSVFAYALSYDWHQGHMGNRPDYPNVIRL 351

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           F+CH   +DG + +  VN + F P+  G F T  ++G    WD  S++RL  + R +  +
Sbjct: 237 FKCH---RDG-NDIYSVNSLNFHPV-HGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPI 291

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEP 90
              S+NH G + A A+   + +      P
Sbjct: 292 PCSSFNHDGSIYAYAACYDWSKGAENHNP 320

Arabidopsis thaliana (taxid: 3702)

>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rae1 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCH         +  VN + F P   G F T  ++G  + WD  S +RL   P    ++
Sbjct: 241 FRCHRNQAGNSADVYSVNSIAFHP-QYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTI 299

Query: 62  ASLSYNHGGQLLAVASSCTYQEA 84
           +  ++N  G + A A S  + + 
Sbjct: 300 SCSTFNRTGDIFAYAISYDWSKG 322

Required for mitotic cell growth as well as for spore germination. Functions in cell cycle progression through trafficking of proteins required for mitosis. Has a role in the mRNA export process.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
357487325	346	Mitotic checkpoint protein bub3 [Medicag	0.929	0.306	0.684	3e-38
224108936	334	predicted protein [Populus trichocarpa]	0.859	0.293	0.734	7e-37
225462947	327	PREDICTED: mitotic checkpoint protein bu	0.868	0.302	0.686	1e-32
118481877	321	unknown [Populus trichocarpa]	0.728	0.258	0.746	1e-29
224101415	321	predicted protein [Populus trichocarpa]	0.728	0.258	0.746	1e-29
21593642	314	mitotic checkpoint protein, putative [Ar	0.850	0.308	0.628	1e-29
18409261	314	transducin/WD-40 repeat-containing prote	0.850	0.308	0.628	1e-29
12597795	315	mitotic checkpoint protein, putative [Ar	0.850	0.307	0.628	1e-29
297838703	315	transducin family protein [Arabidopsis l	0.850	0.307	0.632	4e-29
255542136	509	initiation factor 5a, putative [Ricinus	0.964	0.216	0.552	1e-27

>gi|357487325|ref|XP_003613950.1| Mitotic checkpoint protein bub3 [Medicago truncatula] gi|355515285|gb|AES96908.1| Mitotic checkpoint protein bub3 [Medicago truncatula]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 89/111 (80%), Gaps = 5/111 (4%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPKSKDG+HHL  VN++ FSPL  GAFVTGD+EGY   WDA+SR+RL E PR+SNSV
Sbjct: 236 FRCHPKSKDGQHHLASVNNIAFSPLMSGAFVTGDDEGYATIWDARSRKRLIEFPRYSNSV 295

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQSACVGSSS 112
           ASLSYNH GQLLAVASS T+QEA  I EPPQ+FI ++D+I      +GSSS
Sbjct: 296 ASLSYNHSGQLLAVASSYTFQEAKEIVEPPQVFIHKVDNID-----IGSSS 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108936|ref|XP_002315022.1| predicted protein [Populus trichocarpa] gi|222864062|gb|EEF01193.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/98 (73%), Positives = 81/98 (82%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPK+KDG+ HLV VND+ F+PL  G FVTGDNEGYV AWDAQS+R+L E PR+ NSV
Sbjct: 220 FRCHPKTKDGKAHLVSVNDIAFNPLISGTFVTGDNEGYVTAWDAQSKRKLHEFPRYPNSV 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRID 99
           ASLSYNH GQLLAVASS TYQEA   E PPQIFI ++D
Sbjct: 280 ASLSYNHVGQLLAVASSYTYQEANETEVPPQIFIQKMD 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462947|ref|XP_002267447.1| PREDICTED: mitotic checkpoint protein bub3 [Vitis vinifera] gi|296083003|emb|CBI22304.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 77/99 (77%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPKSK GR HLV VND+VF+P+   AFVT D+EGYV +WDAQSRRRLFEL +  NSV
Sbjct: 218 FRCHPKSKKGRDHLVAVNDIVFNPIICSAFVTCDDEGYVCSWDAQSRRRLFELSKNPNSV 277

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD 100
            S SYNH GQLLAVASSCTYQE    EE P+I +  +DD
Sbjct: 278 VSSSYNHSGQLLAVASSCTYQEGNEKEESPRILVHVMDD 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481877|gb|ABK92875.1| unknown [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 68/83 (81%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHP +KDG  HLV VND+VF+P   G FVTGDNEGYV AWDA+S+RRL E PR+ NSV
Sbjct: 220 FRCHPTTKDGTAHLVSVNDIVFNPHIGGTFVTGDNEGYVTAWDAKSKRRLHEFPRYPNSV 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEA 84
           ASLSYNH GQLLAV SS TYQEA
Sbjct: 280 ASLSYNHVGQLLAVVSSYTYQEA 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101415|ref|XP_002312269.1| predicted protein [Populus trichocarpa] gi|222852089|gb|EEE89636.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 68/83 (81%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHP +KDG  HLV VND+VF+P   G FVTGDNEGYV AWDA+S+RRL E PR+ NSV
Sbjct: 220 FRCHPTTKDGTAHLVSVNDIVFNPHIGGTFVTGDNEGYVTAWDAKSKRRLHEFPRYPNSV 279

Query: 62  ASLSYNHGGQLLAVASSCTYQEA 84
           ASLSYNH GQLLAV SS TYQEA
Sbjct: 280 ASLSYNHVGQLLAVVSSYTYQEA 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593642|gb|AAM65609.1| mitotic checkpoint protein, putative [Arabidopsis thaliana]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPKS++GR   V +N + FSP   G FVTGDNEGYV +W+A+SRRRL ELPR+SNS+
Sbjct: 218 FRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYSNSI 277

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
           ASL+++H G+LLA+ASS TYQ+A   EE PQ+FI R+
Sbjct: 278 ASLAFDHTGELLAIASSHTYQDAKEKEEAPQVFIHRL 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409261|ref|NP_564965.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332196799|gb|AEE34920.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPKS++GR   V +N + FSP   G FVTGDNEGYV +W+A+SRRRL ELPR+SNS+
Sbjct: 218 FRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYSNSI 277

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
           ASL+++H G+LLA+ASS TYQ+A   EE PQ+FI R+
Sbjct: 278 ASLAFDHTGELLAIASSHTYQDAKEKEEAPQVFIHRL 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12597795|gb|AAG60107.1|AC073178_18 mitotic checkpoint protein, putative [Arabidopsis thaliana]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPKS++GR   V +N + FSP   G FVTGDNEGYV +W+A+SRRRL ELPR+SNS+
Sbjct: 219 FRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYSNSI 278

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
           ASL+++H G+LLA+ASS TYQ+A   EE PQ+FI R+
Sbjct: 279 ASLAFDHTGELLAIASSHTYQDAKEKEEAPQVFIHRL 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838703|ref|XP_002887233.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333074|gb|EFH63492.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPK ++GR   V +N + FSP   G FVTGDNEGYV +W+A+SRRRLFELPR+SNS+
Sbjct: 218 FRCHPKCRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLFELPRYSNSI 277

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVI-EEPPQIFIIRI 98
           ASL++NH G+LLA+ SS TYQEA    EE PQ+FI R 
Sbjct: 278 ASLAFNHTGELLAITSSHTYQEAKENEEEAPQVFIQRF 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542136|ref|XP_002512132.1| initiation factor 5a, putative [Ricinus communis] gi|223549312|gb|EEF50801.1| initiation factor 5a, putative [Ricinus communis]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 81/114 (71%), Gaps = 4/114 (3%)

Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
           FRCHPKS+DGR HLV +ND+VF+PL  G FVTGDN+GY+  W  +S+RRL E  R+ NSV
Sbjct: 216 FRCHPKSRDGRTHLVSINDIVFNPLVCGTFVTGDNDGYIITWHNESKRRLCEFSRYPNSV 275

Query: 62  ASLSYNHGGQLLAVASSCTYQEATVI--EEPPQIFIIRIDDIQQQSACVGSSSR 113
           ASLS+NH G+LLA+ASS TYQEA  +  + PP+    R   +  +S   G SS+
Sbjct: 276 ASLSFNHLGELLAIASSYTYQEANEMYGKCPPKYLYRRW--MTGRSFSAGDSSK 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2026446	314	AT1G69400 "AT1G69400" [Arabido	0.789	0.286	0.633	9.4e-27
TAIR|locus:2091211	340	BUB3.1 "AT3G19590" [Arabidopsi	0.771	0.258	0.426	5.1e-17
TAIR|locus:2007248	339	BUB3.2 "AT1G49910" [Arabidopsi	0.771	0.259	0.426	1.9e-16
WB|WBGene00013209	343	bub-3 [Caenorhabditis elegans	0.710	0.236	0.409	3.1e-12
UNIPROTKB|Q9XWH0	343	bub-3 "Protein BUB-3" [Caenorh	0.710	0.236	0.409	3.1e-12
DICTYBASE|DDB_G0292134	331	bub3 "putative mitotic checkpo	0.771	0.265	0.388	6e-12
ZFIN|ZDB-GENE-041010-210	326	bub3 "BUB3 budding uninhibited	0.763	0.266	0.370	3.4e-11
ASPGD|ASPL0000047688	357	sldB [Emericella nidulans (tax	0.710	0.226	0.341	9.4e-11
UNIPROTKB|B4DDM6	248	BUB3 "cDNA FLJ57899, highly si	0.701	0.322	0.345	9.5e-11
UNIPROTKB|Q5ZHW3	329	BUB3 "Uncharacterized protein"	0.763	0.264	0.359	9.8e-11

TAIR|locus:2026446 AT1G69400 "AT1G69400" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 57/90 (63%), Positives = 72/90 (80%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             FRCHPKS++GR   V +N + FSP   G FVTGDNEGYV +W+A+SRRRL ELPR+SNS+
Sbjct:   218 FRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYSNSI 277

Query:    62 ASLSYNHGGQLLAVASSCTYQEATVIEEPP 91
             ASL+++H G+LLA+ASS TYQ+A   EE P
Sbjct:   278 ASLAFDHTGELLAIASSHTYQDAKEKEEAP 307

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2091211 BUB3.1 "AT3G19590" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 5.1e-17, P = 5.1e-17
 Identities = 38/89 (42%), Positives = 60/89 (67%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH KS+ GR  + PVN + F P+  G F TG  +G+V  WD  +++RL++  ++  S+
Sbjct:   228 FKCHRKSEAGRDIVYPVNSIAFHPIY-GTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSI 286

Query:    62 ASLSYNHGGQLLAVASSCTYQEATVIEEP 90
             ++LS++  GQLLAVASS T++E    +EP
Sbjct:   287 SALSFSRDGQLLAVASSYTFEEGEKSQEP 315

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000776 "kinetochore" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2007248 BUB3.2 "AT1G49910" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 38/89 (42%), Positives = 59/89 (66%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH KS+DGR  + PVN + F P+  G F +G  +G+V  WD  +++RL++  ++  S+
Sbjct:   227 FKCHRKSEDGRDIVYPVNAIAFHPIY-GTFASGGCDGFVNIWDGNNKKRLYQYSKYPTSI 285

Query:    62 ASLSYNHGGQLLAVASSCTYQEATVIEEP 90
             A+LS++  G LLAVASS T++E     EP
Sbjct:   286 AALSFSRDGGLLAVASSYTFEEGDKPHEP 314

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

WB|WBGene00013209 bub-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 169 (64.5 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/83 (40%), Positives = 50/83 (60%)

Query:     2 FRCH-PKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS 60
             F+CH  K  DG   + PV+ V F P   G F TG  +G V  WD  +R+R+ +L +F  S
Sbjct:   237 FKCHREKDTDGTELIHPVHTVAFHP-KYGTFATGGADGIVNIWDPFNRKRIIQLHKFETS 295

Query:    61 VASLSYNHGGQLLAVASSCTYQE 83
             ++SLS+N  G  LA+A+S  Y++
Sbjct:   296 ISSLSFNEDGSQLAIATSYQYEK 318

GO:0007067 "mitosis" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

GO:0033316 "meiotic spindle assembly checkpoint" evidence=IGI

UNIPROTKB|Q9XWH0 bub-3 "Protein BUB-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 169 (64.5 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/83 (40%), Positives = 50/83 (60%)

Query:     2 FRCH-PKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS 60
             F+CH  K  DG   + PV+ V F P   G F TG  +G V  WD  +R+R+ +L +F  S
Sbjct:   237 FKCHREKDTDGTELIHPVHTVAFHP-KYGTFATGGADGIVNIWDPFNRKRIIQLHKFETS 295

Query:    61 VASLSYNHGGQLLAVASSCTYQE 83
             ++SLS+N  G  LA+A+S  Y++
Sbjct:   296 ISSLSFNEDGSQLAIATSYQYEK 318

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0292134 bub3 "putative mitotic checkpoint protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 166 (63.5 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH  ++ G   + PVN + F+P   G F TG  +  V  WD  +R+RL  L  +  S+
Sbjct:   226 FKCHRLTESGVDVVYPVNCIAFNP-HYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSI 284

Query:    62 ASLSYNHGGQLLAVASSCTYQEATVIEEPP 91
             +S+S+N  G +LAVASS T++E    + PP
Sbjct:   285 SSMSFNTDGNILAVASSYTFEEGEK-DHPP 313

GO:0003674 "molecular_function" evidence=ND

GO:0000776 "kinetochore" evidence=ISS

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-041010-210 bub3 "BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 33/89 (37%), Positives = 53/89 (59%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH   ++G   + PVN + F  +    F TG ++G+V  WD  +++RL +  R+ +S+
Sbjct:   221 FKCHRLKENGIEQVYPVNAISFHSV-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPSSI 279

Query:    62 ASLSYNHGGQLLAVASSCTYQEATVIEEP 90
             ASLS++  G LLA+ASS   QE   +  P
Sbjct:   280 ASLSFSTDGSLLAIASSYM-QELGDVSHP 307

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000047688 sldB [Emericella nidulans (taxid:162425)]

 Score = 156 (60.0 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 28/82 (34%), Positives = 52/82 (63%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH ++ D    + PVN + F P+  G F +G  +G VA WD  ++RR+ +  ++ +SV
Sbjct:   249 FKCHRQTSDDVDVVYPVNSLAFHPI-HGTFASGGGDGVVALWDGIAKRRIRQYQKYPSSV 307

Query:    62 ASLSYNHGGQLLAVASSCTYQE 83
             A+++++  G+ LA+A S  Y++
Sbjct:   308 AAVAFSSNGKYLAIAISPGYED 329

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0034613 "cellular protein localization" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

UNIPROTKB|B4DDM6 BUB3 "cDNA FLJ57899, highly similar to Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 9.5e-11, P = 9.5e-11
 Identities = 28/81 (34%), Positives = 49/81 (60%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH   ++    + PVN + F  +    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct:   141 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 199

Query:    62 ASLSYNHGGQLLAVASSCTYQ 82
             ASL++++ G  LA+ASS  Y+
Sbjct:   200 ASLAFSNDGTTLAIASSYMYE 220

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q5ZHW3 BUB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 32/89 (35%), Positives = 52/89 (58%)

Query:     2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
             F+CH   ++    + PVN + F  +    F TG ++G+V  WD  +++RL +  R+  S+
Sbjct:   224 FKCHRLKENNIEQIYPVNAISFHNV-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 282

Query:    62 ASLSYNHGGQLLAVASSCTYQEATVIEEP 90
             ASL++++ G  LA+ASS  Y E   IE P
Sbjct:   283 ASLAFSNDGTTLAIASSYMY-EMDDIEHP 310

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 14  HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
           H   VN V FSP       +G  +G +  WD ++   +  L   +NSV SL+++  G+ L
Sbjct: 218 HENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276

Query: 74  AVASS 78
           A  S+
Sbjct: 277 ASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 12  RHHLVPVNDVVFSPLSRGAFVT-GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG 70
           R H   VN V FSP     FV     +G +  WD ++ + +  L   +  V S++++  G
Sbjct: 132 RGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189

Query: 71  QLLAVASS 78
           + L  +SS
Sbjct: 190 EKLLSSSS 197

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.43
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.37
KOG0266	456	consensus WD40 repeat-containing protein [General	99.37
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.36
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.28
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.27
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.27
PTZ00421	493	coronin; Provisional	99.22
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.22
KOG0266	456	consensus WD40 repeat-containing protein [General	99.21
KOG0286	343	consensus G-protein beta subunit [General function	99.18
KOG0289	506	consensus mRNA splicing factor [General function p	99.17
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.15
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.13
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.1
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.1
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.09
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.08
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.08
PTZ00421	493	coronin; Provisional	99.08
KOG0286	343	consensus G-protein beta subunit [General function	99.05
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.04
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.04
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.02
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.01
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.01
PTZ00420	568	coronin; Provisional	99.0
KOG0645	312	consensus WD40 repeat protein [General function pr	99.0
KOG1273	405	consensus WD40 repeat protein [General function pr	98.99
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	98.92
KOG0296	399	consensus Angio-associated migratory cell protein	98.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.91
PTZ00420	568	coronin; Provisional	98.91
KOG1539	910	consensus WD repeat protein [General function pred	98.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	98.89
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.89
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	98.89
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.89
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.88
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.87
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.86
KOG0645	312	consensus WD40 repeat protein [General function pr	98.86
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	98.84
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.84
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.83
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.83
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.82
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.82
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.82
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.82
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.8
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.79
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.78
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.77
PLN00181	793	protein SPA1-RELATED; Provisional	98.75
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.75
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.75
KOG0289	506	consensus mRNA splicing factor [General function p	98.74
KOG0267	825	consensus Microtubule severing protein katanin p80	98.74
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.73
PLN00181	793	protein SPA1-RELATED; Provisional	98.73
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.71
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.7
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.69
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.69
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.67
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.67
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.66
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.65
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.64
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.63
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.62
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.6
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.59
KOG0296	399	consensus Angio-associated migratory cell protein	98.59
KOG0643	327	consensus Translation initiation factor 3, subunit	98.58
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.58
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.57
KOG1539	910	consensus WD repeat protein [General function pred	98.57
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.56
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.54
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.54
KOG0267	825	consensus Microtubule severing protein katanin p80	98.54
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.52
KOG1310	758	consensus WD40 repeat protein [General function pr	98.52
KOG0641	350	consensus WD40 repeat protein [General function pr	98.51
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.51
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.5
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.5
KOG1274	933	consensus WD40 repeat protein [General function pr	98.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.49
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.49
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.48
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.48
KOG0646	476	consensus WD40 repeat protein [General function pr	98.47
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.46
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.45
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.44
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.43
KOG0639	705	consensus Transducin-like enhancer of split protei	98.42
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.41
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.4
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.4
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.39
KOG1273	405	consensus WD40 repeat protein [General function pr	98.39
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.36
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.36
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.36
KOG2321	703	consensus WD40 repeat protein [General function pr	98.32
KOG2139	445	consensus WD40 repeat protein [General function pr	98.32
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.32
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.32
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.31
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.31
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.3
KOG1963	792	consensus WD40 repeat protein [General function pr	98.3
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.29
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.28
KOG0641	350	consensus WD40 repeat protein [General function pr	98.27
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.27
KOG0643	327	consensus Translation initiation factor 3, subunit	98.26
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.24
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.23
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.2
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.19
KOG4328	498	consensus WD40 protein [Function unknown]	98.17
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.16
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.14
KOG2055	514	consensus WD40 repeat protein [General function pr	98.13
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.12
KOG2096	420	consensus WD40 repeat protein [General function pr	98.12
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.11
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.1
KOG1274	933	consensus WD40 repeat protein [General function pr	98.1
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.09
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.08
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.05
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.04
KOG0646	476	consensus WD40 repeat protein [General function pr	98.02
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	97.96
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	97.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	97.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	97.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	97.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	97.89
KOG2055	514	consensus WD40 repeat protein [General function pr	97.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	97.88
COG2319	466	FOG: WD40 repeat [General function prediction only	97.88
KOG2048	691	consensus WD40 repeat protein [General function pr	97.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	97.86
PRK01742	429	tolB translocation protein TolB; Provisional	97.83
KOG0639	705	consensus Transducin-like enhancer of split protei	97.83
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.8
KOG1188	376	consensus WD40 repeat protein [General function pr	97.77
PRK05137	435	tolB translocation protein TolB; Provisional	97.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.76
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	97.73
KOG2315	566	consensus Predicted translation initiation factor	97.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	97.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.71
KOG1963	792	consensus WD40 repeat protein [General function pr	97.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.69
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.68
KOG0649	325	consensus WD40 repeat protein [General function pr	97.68
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	97.68
PRK02889	427	tolB translocation protein TolB; Provisional	97.67
KOG0270	463	consensus WD40 repeat-containing protein [Function	97.63
KOG2048	691	consensus WD40 repeat protein [General function pr	97.6
COG2319	466	FOG: WD40 repeat [General function prediction only	97.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.56
KOG4328	498	consensus WD40 protein [Function unknown]	97.55
KOG2096	420	consensus WD40 repeat protein [General function pr	97.55
KOG4547	541	consensus WD40 repeat-containing protein [General	97.53
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.51
KOG0290	364	consensus Conserved WD40 repeat-containing protein	97.51
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.5
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.48
PRK04922	433	tolB translocation protein TolB; Provisional	97.47
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	97.46
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.45
PRK05137	435	tolB translocation protein TolB; Provisional	97.41
PRK00178	430	tolB translocation protein TolB; Provisional	97.39
PRK03629	429	tolB translocation protein TolB; Provisional	97.38
PRK01742	429	tolB translocation protein TolB; Provisional	97.37
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.35
PRK03629	429	tolB translocation protein TolB; Provisional	97.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.34
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.33
KOG0649	325	consensus WD40 repeat protein [General function pr	97.33
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.29
KOG4547	541	consensus WD40 repeat-containing protein [General	97.28
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	97.28
PRK04792	448	tolB translocation protein TolB; Provisional	97.27
PRK04922	433	tolB translocation protein TolB; Provisional	97.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.26
KOG4227	609	consensus WD40 repeat protein [General function pr	97.19
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.18
PRK02889	427	tolB translocation protein TolB; Provisional	97.17
KOG4227	609	consensus WD40 repeat protein [General function pr	97.16
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.13
PRK00178	430	tolB translocation protein TolB; Provisional	97.08
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.98
PRK01029	428	tolB translocation protein TolB; Provisional	96.98
PRK11028	330	6-phosphogluconolactonase; Provisional	96.96
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.94
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	96.93
PRK11028	330	6-phosphogluconolactonase; Provisional	96.92
KOG2139	445	consensus WD40 repeat protein [General function pr	96.87
PRK04792	448	tolB translocation protein TolB; Provisional	96.82
COG4946	668	Uncharacterized protein related to the periplasmic	96.81
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.78
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.73
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	96.54
PRK01029	428	tolB translocation protein TolB; Provisional	96.5
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.4
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	96.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.38
KOG1188	376	consensus WD40 repeat protein [General function pr	96.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.28
PRK04043	419	tolB translocation protein TolB; Provisional	96.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	96.21
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.2
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.16
PRK04043	419	tolB translocation protein TolB; Provisional	96.13
KOG2321	703	consensus WD40 repeat protein [General function pr	96.11
KOG3881	412	consensus Uncharacterized conserved protein [Funct	95.98
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.87
KOG1409	404	consensus Uncharacterized conserved protein, conta	95.73
KOG2695	425	consensus WD40 repeat protein [General function pr	95.71
KOG1310	758	consensus WD40 repeat protein [General function pr	95.71
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.64
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.62
KOG2111	346	consensus Uncharacterized conserved protein, conta	95.53
KOG3621	726	consensus WD40 repeat-containing protein [General	95.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.47
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	95.32
KOG2314	698	consensus Translation initiation factor 3, subunit	95.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.19
KOG2314	698	consensus Translation initiation factor 3, subunit	95.12
KOG1334	559	consensus WD40 repeat protein [General function pr	95.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.97
KOG2315	566	consensus Predicted translation initiation factor	94.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.95
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	94.9
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.72
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	94.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.57
KOG1334	559	consensus WD40 repeat protein [General function pr	94.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.36
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	94.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.04
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	94.01
KOG2395	644	consensus Protein involved in vacuole import and d	93.98
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.4
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	93.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.08
COG4946	668	Uncharacterized protein related to the periplasmic	92.98
KOG4714	319	consensus Nucleoporin [Nuclear structure]	92.64
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	92.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.91
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.88
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.85
TIGR02781	243	VirB9 P-type conjugative transfer protein VirB9. T	91.8
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.9
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	90.52
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	90.42
PRK13861	292	type IV secretion system protein VirB9; Provisiona	90.37
PRK13885	299	conjugal transfer protein TrbG; Provisional	90.17
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	90.14
PRK13616	591	lipoprotein LpqB; Provisional	89.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	89.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.47
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	89.44
PRK10115	686	protease 2; Provisional	89.23
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	88.88
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	88.53
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.29
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	88.28
PRK02888	635	nitrous-oxide reductase; Validated	88.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	88.24
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.96
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	87.86
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	87.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.92
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.91
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	86.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	86.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	86.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	86.27
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.12
KOG4532	344	consensus WD40-like repeat containing protein [Gen	85.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	85.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	84.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	84.36
KOG3621	726	consensus WD40 repeat-containing protein [General	84.34
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	84.09
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	83.89
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.75
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	83.35
COG3391	381	Uncharacterized conserved protein [Function unknow	83.04
COG5167	776	VID27 Protein involved in vacuole import and degra	82.93
KOG2695	425	consensus WD40 repeat protein [General function pr	82.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	82.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	81.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	81.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	81.29
PRK13839	277	conjugal transfer protein TrbG; Provisional	81.14
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	81.14

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=3e-22  Score=146.59  Aligned_cols=99  Identities=24%  Similarity=0.512  Sum_probs=91.2

Q ss_pred             CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677            1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus         1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      +|||||+++.....+|+||+|+|+| ....|+|+|.||++.+||-+.+..++..+.++.+|++++|+.+|.++|.+.+++
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            6999999776444699999999999 889999999999999999999988888889999999999999999999999999


Q ss_pred             ccccccc---CCCCcEEEEEcCc
Q 033677           81 YQEATVI---EEPPQIFIIRIDD  100 (114)
Q Consensus        81 ~~~~~~~---~~~~~i~i~~~~~  100 (114)
                      |..|+|.   +.+++||||.+..
T Consensus       316 WSkGhe~~n~~~~~~I~l~~~~~  338 (347)
T KOG0647|consen  316 WSKGHEGNNPQYKPQIFLHPVST  338 (347)
T ss_pred             cccccccCCCCCCCeEEEeeccc
Confidence            9999885   8888999999974

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2.5e-20  Score=136.49  Aligned_cols=100  Identities=39%  Similarity=0.719  Sum_probs=92.8

Q ss_pred             CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677            1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus         1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      +|||||+..++....+|||+|+|+| -..+|+||+.||.|.+||+.+++.+..+......|.+++|+-||..||+|+++.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~  296 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQ  296 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechh
Confidence            6999999999999999999999999 888999999999999999999999998888888899999999999999999999


Q ss_pred             cccccc-cCCCCcEEEEEcCcc
Q 033677           81 YQEATV-IEEPPQIFIIRIDDI  101 (114)
Q Consensus        81 ~~~~~~-~~~~~~i~i~~~~~~  101 (114)
                      ++++.. ....++||||.+.+-
T Consensus       297 ye~~~~~~~~~~~i~I~~l~d~  318 (323)
T KOG1036|consen  297 YERADTPTHERNAIFIRDLTDY  318 (323)
T ss_pred             hhcCCCCCCCCCceEEEecccc
Confidence            998877 577788999999774

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.43  E-value=5.9e-13  Score=106.74  Aligned_cols=86  Identities=21%  Similarity=0.346  Sum_probs=73.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccccc---
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATV---   86 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~---   86 (114)
                      |...|.++.||| +.+++++||.|.++++||+.++..++.|.+|..+|++++|||+|++||+|+.|    .|+.+..   
T Consensus       534 hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  534 HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             cccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            466688999999 99999999999999999999999999999999999999999999999999998    6886652   


Q ss_pred             ---cCCCCcEEEEEcCc
Q 033677           87 ---IEEPPQIFIIRIDD  100 (114)
Q Consensus        87 ---~~~~~~i~i~~~~~  100 (114)
                         ..++..|+-.+.+-
T Consensus       613 ~~l~~Ht~ti~SlsFS~  629 (707)
T KOG0263|consen  613 KQLKGHTGTIYSLSFSR  629 (707)
T ss_pred             hhhhcccCceeEEEEec
Confidence               24455566555543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=2.2e-12  Score=97.65  Aligned_cols=73  Identities=26%  Similarity=0.387  Sum_probs=67.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc--cccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ--EATV   86 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~--~~~~   86 (114)
                      -|..+|.+++|+| ++..|++|+.|.++++||+.+...+++.++|..-|.+++|+|||+.||+|+.|    .|+  .|.+
T Consensus       113 GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~  191 (480)
T KOG0271|consen  113 GHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ  191 (480)
T ss_pred             CCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence            3577899999999 99999999999999999999999999999999999999999999999999988    576  5544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=3.2e-12  Score=99.66  Aligned_cols=70  Identities=29%  Similarity=0.509  Sum_probs=63.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      |...|++++|+| +++++++|+.|++|++||+++++++..+.+|...|++++|+++|.+|++++.|    .|+..
T Consensus       245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            356689999999 88999999999999999999999999999999999999999999999999877    46633

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.36  E-value=1.2e-12  Score=99.65  Aligned_cols=68  Identities=24%  Similarity=0.368  Sum_probs=64.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|.+|+|+| ++.+++|||.|..-++||++++.++..+.+|..+|.+|+|+|+|..||+|++|    .|+
T Consensus       302 Hs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  302 HSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             cccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence            467899999999 99999999999999999999999999999999999999999999999999999    576

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.28  E-value=1.3e-11  Score=89.68  Aligned_cols=69  Identities=28%  Similarity=0.414  Sum_probs=63.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~   82 (114)
                      +|.....+|.|.| ++..|++|+.|..+.+||++...|++.+..++.||..++||-||++||+||.|.++
T Consensus       187 AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  187 AHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI  255 (313)
T ss_pred             cCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence            4555667889999 99999999999999999999999999999999999999999999999999999665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.27  E-value=3e-11  Score=92.25  Aligned_cols=88  Identities=22%  Similarity=0.347  Sum_probs=72.0

Q ss_pred             CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Ccccc-
Q 033677           12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TYQEA-   84 (114)
Q Consensus        12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~~~~-   84 (114)
                      ..|..+|++++|+|.+...|||||.|++|.+||+|+. +++..+.+|...|..|.|||.- .+||+++.|    .|+.. 
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            3678899999999977789999999999999999984 5778889999999999999975 588888888    57633 


Q ss_pred             --ccc-------CCCCcEEEEEcC
Q 033677           85 --TVI-------EEPPQIFIIRID   99 (114)
Q Consensus        85 --~~~-------~~~~~i~i~~~~   99 (114)
                        +++       .+|.-+|+|--.
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH  372 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGH  372 (422)
T ss_pred             cccccChhhhccCCcceeEEecCc
Confidence              222       566678888653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.27  E-value=1.4e-11  Score=93.89  Aligned_cols=65  Identities=31%  Similarity=0.541  Sum_probs=61.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      |..+|.+|+|+| ++..|+|||.|+++++||++...+++.+++|.+.|+.|+|+| .|.+|++++-|
T Consensus       344 H~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  344 HIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             cccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            689999999999 999999999999999999999999999999999999999999 67888888877

>PTZ00421 coronin; Provisional

Probab=99.22  E-value=2.1e-10  Score=90.52  Aligned_cols=65  Identities=26%  Similarity=0.410  Sum_probs=60.2

Q ss_pred             eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+|+|+| ++ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|+|.+||+++.|
T Consensus       124 H~~~V~~l~f~P-~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D  189 (493)
T PTZ00421        124 HTKKVGIVSFHP-SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD  189 (493)
T ss_pred             CCCcEEEEEeCc-CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC
Confidence            567899999999 65 799999999999999999998888888899999999999999999999988

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.22  E-value=3.5e-11  Score=96.66  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=66.3

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      -|..||..+.|+| +.++|+++|.|+++++|.+++..++..+++|..||..+.|+|-|.+||+++.|    .|..-
T Consensus       449 GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  449 GHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             cCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            4588999999999 99999999999999999999999999999999999999999999999999988    67633

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.21  E-value=2.1e-10  Score=89.53  Aligned_cols=71  Identities=28%  Similarity=0.464  Sum_probs=64.2

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeC-CCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA-QSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~-~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      .|...|++++|+| ++..+++++.|++|++||+ ..+.+++.+.+|...|++++|+|+|+++++|+.|    .|+..
T Consensus       201 ~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  201 GHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             ccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            4577899999999 9999999999999999999 5568899999999999999999999999999998    57644

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.18  E-value=9e-11  Score=86.38  Aligned_cols=66  Identities=21%  Similarity=0.350  Sum_probs=62.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|.+|++.|.++++|++|+.|+..++||++.+.+.+.|.+|...|++|+|.|+|.-||+|+.|
T Consensus       185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence            566799999999667999999999999999999999999999999999999999999999999988

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.17  E-value=8.4e-11  Score=90.14  Aligned_cols=64  Identities=27%  Similarity=0.505  Sum_probs=61.0

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC----cc
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT----YQ   82 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~----~~   82 (114)
                      +++++||| |+.+|.+|..||.+++||+.++..+..|++|.++|.+|+|+.+|.+||+++.|.    |+
T Consensus       350 ~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  350 YTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD  417 (506)
T ss_pred             eEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence            78999999 999999999999999999999999999999999999999999999999999884    76

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.15  E-value=1.3e-10  Score=85.02  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=61.3

Q ss_pred             ecCeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      ...|+++.|+| +  ...|+++|.|+++++||+++.+....+.+|...++.+++||||.++|+|..|    .|+
T Consensus       148 ~~WVscvrfsP-~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  148 REWVSCVRFSP-NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             cCcEEEEEEcC-CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            56799999999 6  4689999999999999999999888899999999999999999999999988    566

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.13  E-value=6.1e-10  Score=90.02  Aligned_cols=97  Identities=19%  Similarity=0.357  Sum_probs=80.9

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc----
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA----   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~----   84 (114)
                      -|...+++++++| |+++++||++||.|++||..++-|+.+|..|...|+.+.|+..|+.|.+++-|    .|+.-    
T Consensus       348 gH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  348 GHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            4578899999999 99999999999999999999999999999999999999999999999999988    57633    


Q ss_pred             -cccCCCCcEEEEEcCcc-cccceeeec
Q 033677           85 -TVIEEPPQIFIIRIDDI-QQQSACVGS  110 (114)
Q Consensus        85 -~~~~~~~~i~i~~~~~~-~~~~~~~~~  110 (114)
                       ..+..|..+..-.+..+ .+...|.|.
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeec
Confidence             23566666666666555 455666654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.10  E-value=1.2e-10  Score=88.72  Aligned_cols=66  Identities=27%  Similarity=0.450  Sum_probs=63.2

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|.+.|.++.||| ...+|++||.|..|++||.++++|+.++..|...|..+.|+|++.+|++++.|
T Consensus       220 GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD  285 (464)
T KOG0284|consen  220 GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD  285 (464)
T ss_pred             cCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence            4578899999999 88999999999999999999999999999999999999999999999999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.10  E-value=8.1e-10  Score=86.40  Aligned_cols=69  Identities=23%  Similarity=0.355  Sum_probs=63.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .|..-|+++.|+| ++++|++++.||.|.+||-.+++.+..+.   +|.+.|.+++|+||++.|++++.|    .|+
T Consensus       188 ~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  188 EHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            4566799999999 99999999999999999999999998887   789999999999999999999998    576

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.09  E-value=3.7e-10  Score=82.65  Aligned_cols=68  Identities=18%  Similarity=0.276  Sum_probs=64.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |.+.|+.+...+ +++++++++.|+++++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|    .|+
T Consensus        62 HsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   62 HSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             cceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            466799999999 99999999999999999999999999999999999999999999999999999    576

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.08  E-value=2.8e-10  Score=86.39  Aligned_cols=65  Identities=22%  Similarity=0.463  Sum_probs=62.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |+.+|+.|+|+. |.++|++|+.|.++++||+++.+....+++|.+.|.++.|+|||..+++|..|
T Consensus       408 Hv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd  472 (480)
T KOG0271|consen  408 HVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD  472 (480)
T ss_pred             ccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCc
Confidence            577899999999 99999999999999999999999888999999999999999999999999888

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.08  E-value=3.1e-10  Score=82.39  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             CCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           10 DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        10 ~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      ++......|++.+++| +.+.|++|+.|+.++.||+.++..+..+ ++|.++|.++.|+|||++.|+||.|    .|+.+
T Consensus       219 Ks~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  219 KSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             eeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            4455567789999999 8899999999999999999999988876 7999999999999999999999999    58755

>PTZ00421 coronin; Provisional

Probab=99.08  E-value=2.4e-09  Score=84.59  Aligned_cols=70  Identities=20%  Similarity=0.424  Sum_probs=59.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Cc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TY   81 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~   81 (114)
                      |..+|++|+|+|.++++|++|+.||+|++||+.++       ..+..+.+|...|.+++|+|++ .+||+++.|    .|
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW  153 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW  153 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence            46789999999955689999999999999999764       2456778899999999999986 689999888    57


Q ss_pred             cc
Q 033677           82 QE   83 (114)
Q Consensus        82 ~~   83 (114)
                      +.
T Consensus       154 Dl  155 (493)
T PTZ00421        154 DV  155 (493)
T ss_pred             EC
Confidence            63

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.05  E-value=7.8e-10  Score=81.49  Aligned_cols=67  Identities=22%  Similarity=0.395  Sum_probs=58.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      ...||+|+|.| ++.-|++|++|+++++||++..+.+..+..  ...+|++++||..|++|.+|..|    .|+
T Consensus       229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence            34599999999 999999999999999999999877776653  35689999999999999998777    576

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.04  E-value=8.6e-10  Score=85.26  Aligned_cols=88  Identities=18%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CeecCeEEEEECC--------CCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----C
Q 033677           13 HHLVPVNDVVFSP--------LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----T   80 (114)
Q Consensus        13 ~~~~~V~~v~f~p--------~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~   80 (114)
                      .|...|..+.|+|        ..+.++++++.|++|++||+..+.++..|-+|..||.+++|||+|+++|+|+.|    .
T Consensus       399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i  478 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI  478 (524)
T ss_pred             hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence            4555677777665        224589999999999999999999999999999999999999999999999998    4


Q ss_pred             cc--cc---cccCCCCcEEEEEcCc
Q 033677           81 YQ--EA---TVIEEPPQIFIIRIDD  100 (114)
Q Consensus        81 ~~--~~---~~~~~~~~i~i~~~~~  100 (114)
                      |.  .+   ++.++...||--.-+.
T Consensus       479 ws~~~~~l~~s~~~~~~Ifel~Wn~  503 (524)
T KOG0273|consen  479 WSTKTGKLVKSYQGTGGIFELCWNA  503 (524)
T ss_pred             ccccchheeEeecCCCeEEEEEEcC
Confidence            65  22   3456666655444433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=1e-09  Score=88.75  Aligned_cols=67  Identities=18%  Similarity=0.354  Sum_probs=58.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      .|..=|++|+|+|.|.++|++|+-||.|++|++...+.+. +.+...-|++++|+|||++.++|+-+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G  473 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNG  473 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEecc
Confidence            4566699999999777999999999999999999887655 556678999999999999999999773

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.02  E-value=1.5e-09  Score=82.16  Aligned_cols=85  Identities=13%  Similarity=0.281  Sum_probs=66.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC---CeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Ccccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS---RRRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TYQEA   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~---~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~~~~   84 (114)
                      .|..-||.|+|+. .-.+|++|++||++++||+++   ++.+..|+.|..+|++|.|+|.. ..||+++.|    .|+..
T Consensus       300 Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  300 AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            5566799999998 666999999999999999986   45677888999999999999954 567777777    57633


Q ss_pred             ---c--c-------c---CCCCcEEEEEc
Q 033677           85 ---T--V-------I---EEPPQIFIIRI   98 (114)
Q Consensus        85 ---~--~-------~---~~~~~i~i~~~   98 (114)
                         +  |       .   .+|+-+|+|--
T Consensus       379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqG  407 (440)
T KOG0302|consen  379 VEADEEEIDQEAAEGLQDLPPQLLFVHQG  407 (440)
T ss_pred             ccCChhhhccccccchhcCCceeEEEecc
Confidence               1  1       0   55667888843

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.01  E-value=5.5e-10  Score=87.60  Aligned_cols=64  Identities=14%  Similarity=0.328  Sum_probs=58.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      .+|+..+|+| |+.+|++.+.||.++++|+.+.+.+-.++...+.+.+++|||||+|+++|..||
T Consensus       291 g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  291 GSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             ccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence            3689999999 999999999999999999999887777777788899999999999999999994

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.01  E-value=1e-09  Score=85.88  Aligned_cols=95  Identities=16%  Similarity=0.269  Sum_probs=68.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEec-----CCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELP-----RFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~-----~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      |+..+++.+|+|++.+.|+|++.||++++||+.+.+.- ..++     +..-++++++|+|||.+||+|+.|    .|+.
T Consensus       267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~  346 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK  346 (641)
T ss_pred             ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence            47789999999955689999999999999999875322 2221     335689999999999999999988    6887


Q ss_pred             ccccCCCCcEEEEEcCcccccceeee
Q 033677           84 ATVIEEPPQIFIIRIDDIQQQSACVG  109 (114)
Q Consensus        84 ~~~~~~~~~i~i~~~~~~~~~~~~~~  109 (114)
                      +.... .+.++++..........|+.
T Consensus       347 ~~~~v-~p~~~vk~AH~~g~~Itsi~  371 (641)
T KOG0772|consen  347 GSRTV-RPVMKVKDAHLPGQDITSIS  371 (641)
T ss_pred             CCccc-ccceEeeeccCCCCceeEEE
Confidence            65432 23455555544433344554

>PTZ00420 coronin; Provisional

Probab=99.00  E-value=7.8e-09  Score=82.85  Aligned_cols=64  Identities=20%  Similarity=0.442  Sum_probs=55.3

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|++|+|+| ++. +|++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+||+++.|
T Consensus       124 H~~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D  188 (568)
T PTZ00420        124 HKKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG  188 (568)
T ss_pred             CCCcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence            456799999999 775 56799999999999999988776664 56789999999999999998877

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=5e-09  Score=76.58  Aligned_cols=66  Identities=21%  Similarity=0.326  Sum_probs=59.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC--CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS--RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~--~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|...|..|+|.| .+++|++||-|+++.+|.-..  .+++..+.+|...|.+++||++|++||+++.|
T Consensus        59 ~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD  126 (312)
T KOG0645|consen   59 GHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD  126 (312)
T ss_pred             cchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence            4566799999999 999999999999999997654  37888889999999999999999999999999

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=7.4e-10  Score=82.53  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .+++.|++ -+..|+.|..||.|.+||+.+....+.+.+|-.||++++||+||+.|.++|.|    .|+
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            78999999 99999999999999999999998888888999999999999999999999988    565

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.98  E-value=1.1e-09  Score=88.45  Aligned_cols=79  Identities=23%  Similarity=0.348  Sum_probs=69.7

Q ss_pred             eeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----
Q 033677            4 CHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----   79 (114)
Q Consensus         4 ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----   79 (114)
                      ||++..   +|-..|.+|.|.| ...+|.++|.|+.|+.||.+..+.+..+.+|...|.+++.+|+|.++++++.|    
T Consensus       584 CHKS~f---AHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIR  659 (888)
T KOG0306|consen  584 CHKSFF---AHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR  659 (888)
T ss_pred             hhhhhh---cccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence            888521   3345699999999 88899999999999999999999999999999999999999999999999998    


Q ss_pred             Ccccccc
Q 033677           80 TYQEATV   86 (114)
Q Consensus        80 ~~~~~~~   86 (114)
                      .|++++|
T Consensus       660 lwE~tde  666 (888)
T KOG0306|consen  660 LWERTDE  666 (888)
T ss_pred             eeeccCc
Confidence            7887764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.98  E-value=1.1e-08  Score=70.96  Aligned_cols=65  Identities=29%  Similarity=0.420  Sum_probs=58.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| +++.|++++.||.|.+||+.+++....+..+...+..+.|+|++++|++++.+
T Consensus         8 h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~   72 (289)
T cd00200           8 HTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD   72 (289)
T ss_pred             cCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC
Confidence            356799999999 89999999999999999999888777788888899999999999999988876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.96  E-value=2.5e-10  Score=85.53  Aligned_cols=64  Identities=19%  Similarity=0.291  Sum_probs=59.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -.+|.+++|+. +.+++++|+.||.|++|.++++.|++.|. .|...|+++.||.|+..+.+++.|
T Consensus       263 d~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD  327 (508)
T KOG0275|consen  263 DDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD  327 (508)
T ss_pred             ccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc
Confidence            45799999999 99999999999999999999999999997 889999999999999999888877

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.94  E-value=2.6e-09  Score=81.82  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=60.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC--CCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC----Cccccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--SRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC----TYQEAT   85 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d----~~~~~~   85 (114)
                      .|...|++++|+|+...+|+++++|+.+.+||+|  +.+.....++|..+|++++|+|- +.+||+|+.|    .|+.-+
T Consensus       225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence            3567799999999666899999999999999999  45555666789999999999995 5689999988    566443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.92  E-value=3.9e-09  Score=85.03  Aligned_cols=69  Identities=26%  Similarity=0.359  Sum_probs=64.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .|-..||+|+++| +..+|+|||.|.+.++|++.+...+..+.+|...|.+|.|+|..++||++|+|    .|.
T Consensus       461 aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  461 AHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence            4566799999999 88999999999999999999989889999999999999999999999999999    465

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.92  E-value=1.1e-08  Score=77.18  Aligned_cols=66  Identities=27%  Similarity=0.398  Sum_probs=62.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|.+|+.+| +.++++|||.|-.-.+|++.++..+..+.+|..+|+++.||.||.+||+|.-+
T Consensus        62 ~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms  127 (399)
T KOG0296|consen   62 KHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS  127 (399)
T ss_pred             hcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC
Confidence            5678899999999 99999999999999999999999999999999999999999999999998765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=3e-09  Score=76.77  Aligned_cols=68  Identities=18%  Similarity=0.258  Sum_probs=63.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |.+.|.+++... ++..|++|+.|..+.+||+.+++.++.+.+|..+|++++|+.+...+++|+-|    .|+
T Consensus        58 hG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   58 HGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             CCceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence            477899999998 88999999999999999999999999999999999999999999999999988    587

>PTZ00420 coronin; Provisional

Probab=98.91  E-value=1.1e-08  Score=81.92  Aligned_cols=70  Identities=11%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--------eeEEecCCCCCeEEEEECCCCCE-EEEEeCC----C
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--------RLFELPRFSNSVASLSYNHGGQL-LAVASSC----T   80 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--------~~~~~~~~~~~v~~v~fspdg~~-la~~s~d----~   80 (114)
                      |..+|++|+|+|.++++|++|+.||.|++||+.++.        .+..+.+|...|.+++|+|++.. ||+++.|    .
T Consensus        73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI  152 (568)
T PTZ00420         73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI  152 (568)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence            467899999999336899999999999999997642        23356788999999999999875 5677777    5


Q ss_pred             ccc
Q 033677           81 YQE   83 (114)
Q Consensus        81 ~~~   83 (114)
                      |+.
T Consensus       153 WDl  155 (568)
T PTZ00420        153 WDI  155 (568)
T ss_pred             EEC
Confidence            763

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.90  E-value=1.1e-08  Score=83.46  Aligned_cols=64  Identities=22%  Similarity=0.379  Sum_probs=57.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|++++|+| ++..|++++.|++|++||+-++.++-.+ ..+.++++++|||+|.+||++..|
T Consensus       575 h~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  575 HGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             cccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEec
Confidence            456699999999 9999999999999999999999877655 467889999999999999999887

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=98.89  E-value=2e-09  Score=82.07  Aligned_cols=69  Identities=25%  Similarity=0.427  Sum_probs=62.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      +|.-.|.+++|+| +...|+++++||+|++||....+....+.+|...|.++.|.|.-.++|+|+.|    .|+
T Consensus       178 hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  178 HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            4456799999999 88899999999999999999988888889999999999999999999999998    566

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.89  E-value=4.4e-09  Score=78.46  Aligned_cols=83  Identities=17%  Similarity=0.396  Sum_probs=72.4

Q ss_pred             CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCC-CCeEEEEECCCCCEEEEEeC
Q 033677            1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFS-NSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus         1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~-~~v~~v~fspdg~~la~~s~   78 (114)
                      |+.|.-+.+-+.+|...|++|.+++ .+++.+||+.||.|++||--+++|+.++. .|+ ..|.+..|..+|+++.+++.
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~  325 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK  325 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence            4667777777888999999999999 99999999999999999999999998885 554 47999999999999998888


Q ss_pred             C----Ccccc
Q 033677           79 C----TYQEA   84 (114)
Q Consensus        79 d----~~~~~   84 (114)
                      |    .|+.+
T Consensus       326 DS~vkLWEi~  335 (430)
T KOG0640|consen  326 DSTVKLWEIS  335 (430)
T ss_pred             cceeeeeeec
Confidence            7    68733

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=98.89  E-value=1.3e-08  Score=78.83  Aligned_cols=100  Identities=12%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             CCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc--
Q 033677           10 DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE--   83 (114)
Q Consensus        10 ~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~--   83 (114)
                      ++......|++|+|+. ++.+|++|+.||.+++|+.. +..+..+..|.+||.+++|+..|.+|++++.|    .|+-  
T Consensus       230 ~s~~~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  230 KSVPSNKDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             ccCCccCCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            4444566799999999 99999999999999999976 55677888999999999999999999999988    5662  


Q ss_pred             c---------------------ccc---CCCCcEEEEEcCcccccceeeecC
Q 033677           84 A---------------------TVI---EEPPQIFIIRIDDIQQQSACVGSS  111 (114)
Q Consensus        84 ~---------------------~~~---~~~~~i~i~~~~~~~~~~~~~~~~  111 (114)
                      |                     +++   .....||+-.+-...|...=.||.
T Consensus       308 g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~  359 (524)
T KOG0273|consen  308 GTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH  359 (524)
T ss_pred             ceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence            2                     111   455568888887776666655553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.89  E-value=1.2e-08  Score=79.97  Aligned_cols=66  Identities=21%  Similarity=0.338  Sum_probs=58.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++|+|+| ++.+|+++...+.+.+||+.+++.. ..+.-|...|.+++|||+.+++|+|+-|
T Consensus       485 ~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  485 EHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             cccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence            5678999999999 9999999999999999999987652 2334588899999999999999999999

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.88  E-value=3e-09  Score=81.49  Aligned_cols=68  Identities=19%  Similarity=0.321  Sum_probs=60.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..||..|.|+| |.+.+++++.|..+.+||+.++.+...+. ++...+++++|.|||..|++|+.|    +|+
T Consensus       268 h~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  268 HSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD  340 (519)
T ss_pred             ccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence            477899999999 99999999999999999999998887775 446889999999999999999998    566

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.88  E-value=1.6e-09  Score=86.70  Aligned_cols=68  Identities=13%  Similarity=0.304  Sum_probs=62.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      .|.-.|+.|.|||+-.+.|++++.|.+|++||+++++....+.+|.+.|..++|||||+.+|+.+.|.
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg  742 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG  742 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc
Confidence            45677999999996678999999999999999999998888999999999999999999999999983

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.87  E-value=2.2e-08  Score=70.22  Aligned_cols=61  Identities=20%  Similarity=0.460  Sum_probs=50.4

Q ss_pred             cCeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+++.|.|+| ++++|++++.   .|.|.+||.++.+.+.... + ..++.++|||||++|++++..
T Consensus       101 ~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  101 QPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             CCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEec
Confidence            4688999999 9999998874   4679999999888776654 3 347899999999999988764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.87  E-value=6.3e-09  Score=77.78  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|...|+.|.|+|...++++++|.|-.|++|++++..|+..+-   +|.+.|.++.|+++|.++|+++-|
T Consensus       133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence            5678899999999556899999999999999999999988764   789999999999999999999888

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.87  E-value=9.4e-09  Score=77.95  Aligned_cols=84  Identities=23%  Similarity=0.355  Sum_probs=63.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc-c
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA-T   85 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~-~   85 (114)
                      |...|.+|+|+|....+|++||.||+|++||+|.+   .++. .+.|..-|+.|+|+..-.+||+|..|    .|+.- .
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~  334 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF  334 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc
Confidence            56778899999944589999999999999999987   4443 37899999999999987789988877    35422 2


Q ss_pred             ccCCCCcEEEEEc
Q 033677           86 VIEEPPQIFIIRI   98 (114)
Q Consensus        86 ~~~~~~~i~i~~~   98 (114)
                      ....|.+-|-++.
T Consensus       335 ~~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  335 KSGQPVATFKYHK  347 (440)
T ss_pred             cCCCcceeEEecc
Confidence            2234444554444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.87  E-value=5.3e-09  Score=84.73  Aligned_cols=70  Identities=23%  Similarity=0.382  Sum_probs=62.0

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEAT   85 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~   85 (114)
                      -.|.+|.|+|..++.|+++.+.|.+++||++. .++.+++..|.++|.++.|+|++.+||+|+.|    .|+.+.
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence            35789999997779999999999999999986 46677788999999999999999999999999    688663

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.86  E-value=8.3e-09  Score=78.03  Aligned_cols=66  Identities=27%  Similarity=0.464  Sum_probs=61.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      |..+|..|.+.| .+..+++|+.|++|++||++.++.+..+..|...|.+++.+|....||+++.|+
T Consensus       276 H~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn  341 (460)
T KOG0285|consen  276 HTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN  341 (460)
T ss_pred             CCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc
Confidence            466799999999 777899999999999999999999999999999999999999999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=1.5e-08  Score=74.19  Aligned_cols=64  Identities=23%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             ecCeEEEEECCCC-CCEEEEEeCCCcEEEEeCCCC---eeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLS-RGAFVTGDNEGYVAAWDAQSR---RRLFEL-PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~-~~~~~t~s~Dg~I~iwD~~~~---~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+..++||| - +..|++||.|..|++|+...+   .+...+ .+|...|.+++|+|.|++||+||-|
T Consensus        14 ~~r~W~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen   14 KDRVWSVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             CCcEEEEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence            44699999999 5 678999999999999999842   333223 2688999999999999999999988

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.84  E-value=9.5e-09  Score=82.84  Aligned_cols=67  Identities=19%  Similarity=0.202  Sum_probs=62.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .-.|.+|.|+| ..+.++|+|.|++|++|.+.+..|++++.+|...|..+.|-.+|+.|.++++|    .|+
T Consensus       505 ~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  505 TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            34599999999 88899999999999999999999999999999999999999999999999988    576

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=2.1e-08  Score=75.74  Aligned_cols=72  Identities=21%  Similarity=0.410  Sum_probs=62.1

Q ss_pred             CeecCeEEEEECCCC---------C-----CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           13 HHLVPVNDVVFSPLS---------R-----GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~---------~-----~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .|.+||.+++|-|..         +     +.+.+++.|++|++||+.++.++.++.+|..-|..++|+|-|+||+++..
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence            567788899887621         1     47889999999999999999999999999999999999999999999988


Q ss_pred             C----Ccccc
Q 033677           79 C----TYQEA   84 (114)
Q Consensus        79 d----~~~~~   84 (114)
                      |    .|+.-
T Consensus       355 Dktlrvwdl~  364 (406)
T KOG0295|consen  355 DKTLRVWDLK  364 (406)
T ss_pred             CCcEEEEEec
Confidence            7    57633

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.84  E-value=1.2e-08  Score=77.08  Aligned_cols=70  Identities=23%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      -|++.|.+|+.+| .-..|++|+.|.++++||++++..+..+.+|..+|..+.+.|-.-.+.+|+-|    .|++
T Consensus       233 GHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl  306 (460)
T KOG0285|consen  233 GHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL  306 (460)
T ss_pred             cccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence            4688999999999 88999999999999999999999999999999999999999866678889988    5773

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.83  E-value=4.4e-08  Score=67.82  Aligned_cols=65  Identities=32%  Similarity=0.505  Sum_probs=58.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+|.+++|+| ++.++++++.||.|++||+.++.....+..+...|.+++|+|++.+|++++.|
T Consensus       218 ~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         218 HENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             cCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence            345799999999 88888888889999999999888888888888899999999999999998877

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.83  E-value=2e-08  Score=81.47  Aligned_cols=65  Identities=29%  Similarity=0.412  Sum_probs=56.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..||.+++|+| .++.|+++|.|.+|++||+-.......-..+...+++++|+|||+.||+++.|
T Consensus       477 HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  477 HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEec
Confidence            478999999999 99999999999999999997653333333567789999999999999999988

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=77.27  Aligned_cols=64  Identities=27%  Similarity=0.333  Sum_probs=56.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC--CeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN--SVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~--~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..+.+.|+| ++.++++||.||.|++|++.++++.+.+.....  .|++++|+|.|..|++++.+
T Consensus       387 asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  387 ASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             ccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence            44578999999 999999999999999999999998888775544  59999999999999888765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.82  E-value=3.3e-08  Score=71.87  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..-+..+.++| ++.+|+++|.|.++++|+.++. +....+++|..-+..++||.||+||++|+.|
T Consensus       214 h~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd  279 (311)
T KOG0315|consen  214 HNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD  279 (311)
T ss_pred             ccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence            444488899999 9999999999999999999987 5455677888899999999999999999999

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.1e-08  Score=72.68  Aligned_cols=62  Identities=19%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|+.|+.+| .++.|++++.|++|++||++..++...+.....+  .++|.|.|-++|++...
T Consensus       100 ~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen  100 KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGS  161 (311)
T ss_pred             CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCC
Confidence            45699999999 8899999999999999999988877666544444  48999999999998876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.82  E-value=1.3e-08  Score=75.37  Aligned_cols=70  Identities=16%  Similarity=0.321  Sum_probs=57.1

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eee-EEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRL-FELPRFSNSVASLSYNHGGQLLAVASSC----TYQEAT   85 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~-~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~   85 (114)
                      ..|.+|+|+|+...+|+++|.||+|++|+++.. ... +....+.+||.+++|+.||..+++|+.|    .|+...
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            458899999954578889999999999999873 322 3445789999999999999999999988    677554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.81  E-value=1e-08  Score=84.98  Aligned_cols=63  Identities=25%  Similarity=0.303  Sum_probs=60.0

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..|.+|+|+| ++.+|++++.|++|.+|+.++.+.+..+.+|...|..++|.|-|++||+-+.|
T Consensus       130 ~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD  192 (942)
T KOG0973|consen  130 SDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD  192 (942)
T ss_pred             CccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC
Confidence            3488999999 99999999999999999999999999999999999999999999999999988

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.80  E-value=6.3e-08  Score=73.18  Aligned_cols=65  Identities=28%  Similarity=0.472  Sum_probs=54.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCeeeEEecCC--CCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEG-YVAAWDAQSRRRLFELPRF--SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg-~I~iwD~~~~~~~~~~~~~--~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |-.++-+++|+| +|.+|+|+|+.| .|+++.+.+++.+++|..-  ...|-+++|+||+.+|++.+..
T Consensus       172 H~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  172 HKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             cCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence            445688999999 999999999999 5678999999999999743  4567799999999988876643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=1.1e-08  Score=82.85  Aligned_cols=63  Identities=14%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      |+..|.+|+|+.  +++|++++.|.+|++|++....|++.| .|.+-||+|+|+| |.++|++|+-|
T Consensus       368 Ht~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  368 HTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             cchhheeccccc--CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccc
Confidence            567799999996  568999999999999999999999877 5889999999999 67899999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.78  E-value=3.5e-08  Score=71.73  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      ..-|++|.|.- ++..++|||+||++++||++...+-+.+ .+..+|+++..+|+...|.+|..+    .|+.+
T Consensus        83 ~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   83 TKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             CCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            56689999999 9999999999999999999996655555 567999999999988778777665    68766

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.77  E-value=5.7e-08  Score=71.89  Aligned_cols=69  Identities=16%  Similarity=0.328  Sum_probs=61.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .|...|+.+.|+| ++..|++||.|..|.+|+.. ..+....+++|.+.|..+.|.+|+..+.+++.|    .|+
T Consensus        45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             CCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            4577899999999 99999999999999999954 456677788999999999999999999999998    576

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.75  E-value=6.6e-08  Score=79.82  Aligned_cols=68  Identities=19%  Similarity=0.345  Sum_probs=59.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC----Cccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC----TYQE   83 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d----~~~~   83 (114)
                      .+|.+++|+|..+..|++++.||.|++||+.+++.+..+..|...|++++|+| ++.+|++|+.|    .|+.
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            46889999983468999999999999999999988888999999999999997 78999999988    4663

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.75  E-value=1e-07  Score=74.71  Aligned_cols=81  Identities=22%  Similarity=0.368  Sum_probs=63.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIF   94 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~   94 (114)
                      .+|+.++.|+| .+ .++.|...|...+.|.++...+ ++.....+++.++|+|+|.+||+|+.|           +.||
T Consensus       407 ~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d-----------~~iy  472 (626)
T KOG2106|consen  407 EDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHD-----------NHIY  472 (626)
T ss_pred             cCceeEeeccC-cc-eEEEeeccceEEEEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCC-----------CeEE
Confidence            45677888888 66 7788888888888888775433 333337899999999999999999988           8999


Q ss_pred             EEEcCccc----ccceeee
Q 033677           95 IIRIDDIQ----QQSACVG  109 (114)
Q Consensus        95 i~~~~~~~----~~~~~~~  109 (114)
                      |..+++..    +.++|.|
T Consensus       473 iy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  473 IYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             EEEECCCCcEEEEeeeecC
Confidence            99998863    4455766

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=3.8e-08  Score=75.56  Aligned_cols=76  Identities=13%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             eeeeecCCC------CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEECCCCCEE
Q 033677            3 RCHPKSKDG------RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYNHGGQLL   73 (114)
Q Consensus         3 ~ch~~~~~~------~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fspdg~~l   73 (114)
                      .|||.....      ..|...|.-+.|++ ++.+||+++.|.+..+|++.....   .+++.+|..+|..+.||||.++|
T Consensus       206 ~c~~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL  284 (519)
T KOG0293|consen  206 FCGRLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL  284 (519)
T ss_pred             ccCcccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE
Confidence            477774433      36788999999999 999999999999999999876543   56677999999999999999988


Q ss_pred             EEEeCC
Q 033677           74 AVASSC   79 (114)
Q Consensus        74 a~~s~d   79 (114)
                      .+++.+
T Consensus       285 laCg~~  290 (519)
T KOG0293|consen  285 LACGFD  290 (519)
T ss_pred             EecCch
Confidence            877766

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.74  E-value=8.2e-08  Score=73.97  Aligned_cols=65  Identities=28%  Similarity=0.436  Sum_probs=58.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..||..|+|+. +|-+|+++.+|+.|++||+|.-+..++++. ...++.++.|.+.|.+|++++.|
T Consensus       388 ht~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  388 HTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             CCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence            688999999999 999999999999999999998887777763 34479999999999999999876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=6e-09  Score=84.00  Aligned_cols=66  Identities=20%  Similarity=0.408  Sum_probs=61.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|..||.+|.|++ ...+|++|+.+|+|++||++.++.++.+.+|...+.++.|+|-|.++|.|+.|
T Consensus        68 ~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStd  133 (825)
T KOG0267|consen   68 GHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTD  133 (825)
T ss_pred             ccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccc
Confidence            4567899999999 88999999999999999999999999999999999999999999999999988

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=5.3e-08  Score=70.90  Aligned_cols=67  Identities=16%  Similarity=0.343  Sum_probs=56.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSCT   80 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d~   80 (114)
                      |.+.|....|+|+.+++|+++|.||.+++||++..-....+..|..+|.++.|+.- ..+||+|+.|.
T Consensus       146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc
Confidence            46679999999977899999999999999999875444448889999999999984 46888888883

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.73  E-value=2.2e-07  Score=69.23  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=56.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEEeC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGY-VAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~-I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +|-.+|.+++++- ++.++||+|..|+ |++||..+++.+.++..  ....|-+|+|||++.+||++|.
T Consensus       179 AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  179 AHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             cccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence            4667799999998 9999999999994 67999999999998873  2457899999999999998774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.73  E-value=2.5e-07  Score=76.47  Aligned_cols=65  Identities=17%  Similarity=0.322  Sum_probs=55.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC-CCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN-HGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs-pdg~~la~~s~d   79 (114)
                      |..+|++|+|+|.++.+|++|+.||.|++||++++..+..+.. ...|.++.|+ ++|.+||+|+.|
T Consensus       574 H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~d  639 (793)
T PLN00181        574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSAD  639 (793)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCC
Confidence            5677999999973568999999999999999999888877764 4678999994 579999999988

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.71  E-value=5.6e-09  Score=80.85  Aligned_cols=69  Identities=23%  Similarity=0.360  Sum_probs=63.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |...|++|.|.|..+.+|++++.|+.|++|++.. +.+++++.+|..+|.+++|+++|..|.+++-|    .|+
T Consensus       213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            4677999999996678999999999999999987 89999999999999999999999999999988    566

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.70  E-value=1.1e-07  Score=79.09  Aligned_cols=66  Identities=23%  Similarity=0.331  Sum_probs=58.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC------------------CeeeEEecCCCCCeEEEEECCCCCEEE
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS------------------RRRLFELPRFSNSVASLSYNHGGQLLA   74 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~------------------~~~~~~~~~~~~~v~~v~fspdg~~la   74 (114)
                      .|..+|+++.|+| ++.+||+|++|+.|.+|+...                  .++...+.+|+..|..++|+|++.+||
T Consensus        67 ~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   67 DHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             cccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence            4678899999999 999999999999999999872                  135566778999999999999999999


Q ss_pred             EEeCC
Q 033677           75 VASSC   79 (114)
Q Consensus        75 ~~s~d   79 (114)
                      +++-|
T Consensus       146 S~s~D  150 (942)
T KOG0973|consen  146 SVSLD  150 (942)
T ss_pred             Eeccc
Confidence            99988

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1e-07  Score=74.95  Aligned_cols=66  Identities=24%  Similarity=0.407  Sum_probs=58.9

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      .|.-.|-.+.|++ ++.+|++|+.|+.+.+||......+..+..|...|.+++|+| ...+||+|.+-
T Consensus       299 ~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  299 GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             cccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence            3566788999999 999999999999999999988888888999999999999999 45699997763

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.69  E-value=2e-08  Score=73.44  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=58.2

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|+.+.+-| |+..|+|+|.|+.|++|.-++.+.+..++.|...|++++|+|+..+||+++.|
T Consensus       253 Gv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD  314 (323)
T KOG0322|consen  253 GVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD  314 (323)
T ss_pred             CccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence            467889999 99999999999999999999999888888999999999999999999999998

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=1e-07  Score=72.06  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|.+++|+| -|++|+++.+|+++++||+++++|++.+..|..-|+++.|..+.-++.+|+-|
T Consensus       333 hdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  333 HDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             ccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence            356799999999 89999999999999999999999999999999999999999988899999877

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.67  E-value=3e-07  Score=67.24  Aligned_cols=67  Identities=16%  Similarity=0.358  Sum_probs=55.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      -|...|..++|+|....+|++++.|..|++||++.+++........+. ..++|+|+|++++++..|+
T Consensus        62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD  128 (313)
T KOG1407|consen   62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDD  128 (313)
T ss_pred             CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcc
Confidence            446678899999955689999999999999999999998877644443 4689999999999999873

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.66  E-value=3e-08  Score=77.75  Aligned_cols=67  Identities=19%  Similarity=0.311  Sum_probs=54.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCC--CeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSN--SVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~--~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .-+++.++|+| ++.+|++|..||.|.+||..+..   ..+.-+.|..  .|++|+||+||++|++=+.|    .|+
T Consensus       317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            45788999999 99999999999999999986542   2223346655  89999999999999997777    577

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.3e-07  Score=68.97  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC----CcccccccC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC----TYQEATVIE   88 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d----~~~~~~~~~   88 (114)
                      |.-.|.+|.|++.....|+++|.|++|++||..-.+.+.++.+|..-|-..+||| .+.+||++|+|    .|+ ..+..
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwd-vr~~g  181 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWD-VRSPG  181 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEE-ecCCC
Confidence            3456899999994457789999999999999998999999999999999999999 56899999999    466 33332


Q ss_pred             CCCcEEEEEc
Q 033677           89 EPPQIFIIRI   98 (114)
Q Consensus        89 ~~~~i~i~~~   98 (114)
                      .+..|-+|..
T Consensus       182 k~~~i~ah~~  191 (311)
T KOG0277|consen  182 KFMSIEAHNS  191 (311)
T ss_pred             ceeEEEeccc
Confidence            2223444443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.8e-07  Score=74.51  Aligned_cols=63  Identities=24%  Similarity=0.403  Sum_probs=54.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC--EEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ--LLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~--~la~~s~d   79 (114)
                      ...|.+|+..| .++.|++|+.||++++|.+.++.|++.++ ..+.|.+|+|+|.+.  +||++...
T Consensus       400 tg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  400 TGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             CCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence            44599999999 99999999999999999999999999886 456899999999875  56766655

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.3e-07  Score=78.08  Aligned_cols=66  Identities=29%  Similarity=0.467  Sum_probs=62.3

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|-+||.+|.||| ++.+|++||+|-.|++|+..+++|+.++.+|.+-|..+.|.+.--++.++|.|
T Consensus        49 eHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDD  114 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDD  114 (1202)
T ss_pred             ccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCC
Confidence            3578999999999 99999999999999999999999999999999999999999988899999988

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.62  E-value=1.8e-07  Score=69.68  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=61.8

Q ss_pred             CeecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           13 HHLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      .|...|+++.|.| ..  +.|++|++||.|.+||.....++..+++|...|+.++..|.|++-.+.++|    .|+..
T Consensus        81 ~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   81 SHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            5678899999988 55  379999999999999999999999999999999999999999876666666    68733

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.62  E-value=3.8e-08  Score=76.31  Aligned_cols=63  Identities=19%  Similarity=0.373  Sum_probs=58.6

Q ss_pred             cCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++++.|+| ++ ++|++|+.|+.|+.||+++++.+..+..|-++|.++.|-++|+.+++++.|
T Consensus       300 ~~~~cvkf~p-d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  300 KVPTCVKFHP-DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             CCceeeecCC-CCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            4578999999 66 899999999999999999999999898999999999999999999999887

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1e-07  Score=49.59  Aligned_cols=30  Identities=27%  Similarity=0.727  Sum_probs=27.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWD   44 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD   44 (114)
                      |..+|++|+|+| +++.|++++.|+.|++||
T Consensus        10 h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            456799999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.5e-07  Score=75.28  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=58.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC--CEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG--QLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg--~~la~~s~d   79 (114)
                      .+=|..|+|+|+|.+.|++++-|++|++|.+.+..+.+++++|...|+++.|-+-|  -+|.+|+.|
T Consensus       140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD  206 (794)
T KOG0276|consen  140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD  206 (794)
T ss_pred             ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence            44599999999888999999999999999999998999999999999999998855  388888887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.59  E-value=1.8e-07  Score=75.70  Aligned_cols=86  Identities=16%  Similarity=0.271  Sum_probs=70.6

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccccc----c
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATV----I   87 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~----~   87 (114)
                      +.|+.++|-| ++..++.+. +..+.+||..++..+..+++|.+.|.+++|+.||+.||+|+.|    .|..-.|    .
T Consensus        13 hci~d~afkP-DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY   90 (1081)
T KOG1538|consen   13 HCINDIAFKP-DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY   90 (1081)
T ss_pred             cchheeEECC-CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence            3699999999 986665554 4578999999999999999999999999999999999999999    6874433    3


Q ss_pred             CCCCcEEEEEcCcccc
Q 033677           88 EEPPQIFIIRIDDIQQ  103 (114)
Q Consensus        88 ~~~~~i~i~~~~~~~~  103 (114)
                      .+.-.|.-++.+++..
T Consensus        91 SH~D~IQCMsFNP~~h  106 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITH  106 (1081)
T ss_pred             ccCCeeeEeecCchHH
Confidence            6666777777777643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.59  E-value=2.4e-07  Score=70.03  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=59.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      |..+|..+.|-+ + ..|++++.||.|++||.++++++..+.+|...|..++++|+++++++++.|.
T Consensus       326 he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  326 HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             CCCceEEEEEcC-c-chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            455699999998 4 5788999999999999999999999999999999999999999999999873

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.58  E-value=3.4e-07  Score=67.14  Aligned_cols=64  Identities=17%  Similarity=0.312  Sum_probs=56.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|+++..+. +...++||+.|.++++||+.+++++.+++ .+.+|..+.|+++|.++++.+.+
T Consensus        51 HtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~  114 (327)
T KOG0643|consen   51 HTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDK  114 (327)
T ss_pred             CCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehh
Confidence            466799999998 88999999999999999999999998875 57889999999999988776644

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.58  E-value=1.5e-07  Score=68.07  Aligned_cols=66  Identities=11%  Similarity=0.142  Sum_probs=62.1

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .+|.++.|+- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+.|...||++..|    .|+
T Consensus        18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            4599999999 99999999999999999999999999999999999999999999999999998    565

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=5.9e-08  Score=80.10  Aligned_cols=66  Identities=15%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      ..|.+|+||| ..-.++++-..|.|++||.+.+.++..|..|++||..+.|.|++-+|++|+.|    .|+
T Consensus        10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen   10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence            4588999999 88899999999999999999999999999999999999999999999998877    566

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.57  E-value=2.1e-07  Score=76.21  Aligned_cols=74  Identities=19%  Similarity=0.292  Sum_probs=61.2

Q ss_pred             cCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----------------------------------
Q 033677            8 SKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-----------------------------------   52 (114)
Q Consensus         8 ~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-----------------------------------   52 (114)
                      ..++.+|-.+|.+|+... .++.+++++.+|.+++||+.....+.                                   
T Consensus       486 f~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~  564 (910)
T KOG1539|consen  486 FGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV  564 (910)
T ss_pred             cccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence            446667889999999998 88899999999999999988754222                                   


Q ss_pred             ------EecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           53 ------ELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        53 ------~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                            .+.+|.+.|++++|||||++|++++-|    .|+
T Consensus       565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                  223467899999999999999999988    566

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.56  E-value=2.3e-07  Score=74.34  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=65.6

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATV   86 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~   86 (114)
                      ..+|++++.+| .+..|++|+.++.|++||-++++.+-.+++|...|..+-.++||..+.++++|    .|+.|.+
T Consensus       171 k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  171 KDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             ccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence            46799999999 88899999999999999999999888899999999999999999999999999    7987754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.54  E-value=2.3e-07  Score=74.69  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNE-----GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~D-----g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|.|.|.+++.+| ++++++++...     ..|++|...+......++.|.-.|+.++|||||++|++.+.|
T Consensus       523 GHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  523 GHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             cCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence            4688999999999 99999998765     478899999988888899999999999999999999999999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.54  E-value=4.1e-07  Score=70.36  Aligned_cols=96  Identities=19%  Similarity=0.304  Sum_probs=74.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc----
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA----   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~----   84 (114)
                      .|...+.+++.+| ++.+|++|+.|..|.+||.++.+.++.+.+|.+.|.+++|......|.+++.|    .|+.-    
T Consensus       200 ~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  200 GHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            5788899999999 99999999999999999999999999999999999999998766677778877    67622    


Q ss_pred             -cccCCCCcEEEEEcCcc-cccceeeec
Q 033677           85 -TVIEEPPQIFIIRIDDI-QQQSACVGS  110 (114)
Q Consensus        85 -~~~~~~~~i~i~~~~~~-~~~~~~~~~  110 (114)
                       +.+.+-+. -|..+.++ ++.+.|||+
T Consensus       279 vetlyGHqd-~v~~IdaL~reR~vtVGg  305 (479)
T KOG0299|consen  279 VETLYGHQD-GVLGIDALSRERCVTVGG  305 (479)
T ss_pred             HHHHhCCcc-ceeeechhcccceEEecc
Confidence             22222222 23344554 455667774

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=9.6e-08  Score=77.22  Aligned_cols=68  Identities=18%  Similarity=0.326  Sum_probs=61.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      ...+..|.|+| -+.+++.|+.|+.+.+||.+...|.+.+.+|...|..+.|+|+|++++.+..|    .|+.
T Consensus       112 ~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  112 LLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             ccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            34577889999 89999999999999999999888999999999999999999999999999986    5763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.52  E-value=4.4e-07  Score=68.98  Aligned_cols=65  Identities=26%  Similarity=0.480  Sum_probs=57.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|.++.|+|.+..+|++|+.|+++++||+|+.. .++.+.+|.+-|.++.|+. |.++++|+.|
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD  409 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD  409 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc
Confidence            345789999999444789999999999999999876 8899999999999999985 6689999988

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=5e-07  Score=71.68  Aligned_cols=65  Identities=12%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECC--CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNH--GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fsp--dg~~la~~s~d   79 (114)
                      |.+.||++.|+. ++.+|++|++|-.+.+||.-..+.+..+. +|...|.+++|-|  +.+++++|..|
T Consensus        49 H~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   49 HTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             ccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            477899999999 99999999999999999999888777764 8899999999988  45789999988

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=1.6e-06  Score=62.78  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~   82 (114)
                      .-.+.|.+|+..| .+++|++|-.|....+||++.++.++.+..|...|.++.|||...||.+++-|+-+
T Consensus       229 lessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i  297 (350)
T KOG0641|consen  229 LESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI  297 (350)
T ss_pred             cccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence            3456799999999 99999999999999999999999999999999999999999999999999877544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.51  E-value=2.4e-07  Score=68.63  Aligned_cols=67  Identities=31%  Similarity=0.451  Sum_probs=56.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      +|...|.++.|+|+.+..|++|++||.|++||.+.. ..+..+.+|..-|.+|.|+|.- +++.+|++|
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            456779999999955578999999999999999864 4567788999999999999954 577777777

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.50  E-value=2.4e-07  Score=70.83  Aligned_cols=64  Identities=22%  Similarity=0.393  Sum_probs=57.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|.-|+|||.-.+.|+++|.|.+|.+|++.+++.+..+. |++.|.+++|+.||.+|++.+.|
T Consensus       131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD  194 (472)
T KOG0303|consen  131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD  194 (472)
T ss_pred             ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence            45688899999334889999999999999999999888876 99999999999999999999999

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.50  E-value=1.3e-07  Score=72.76  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677           11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d   79 (114)
                      ...|...|.+++|+....+.|++||.|.+|++||+.++++...+..|.+.|.++.|+|. +.+|.+|+-|
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D  308 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD  308 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc
Confidence            34678889999999844589999999999999999999999999889999999999995 5678888744

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=4.4e-07  Score=74.84  Aligned_cols=59  Identities=24%  Similarity=0.361  Sum_probs=44.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC--------CCCeEEEEECCCCCEE
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF--------SNSVASLSYNHGGQLL   73 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~--------~~~v~~v~fspdg~~l   73 (114)
                      |-.||.+|.|+| .+++|++.+.||.|++||++++.+...+.+.        ...+..++|+|+|..|
T Consensus       137 h~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l  203 (933)
T KOG1274|consen  137 HDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL  203 (933)
T ss_pred             cCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence            467899999999 9999999999999999999998766655422        2334555666664333

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.49  E-value=1.3e-06  Score=61.26  Aligned_cols=60  Identities=23%  Similarity=0.519  Sum_probs=47.2

Q ss_pred             cCeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+|.+++|+| +++.|++  |..++.|.+||++ .+.+..+.  ..+++.|.|||+|++||+++..
T Consensus        60 ~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~  121 (194)
T PF08662_consen   60 GPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFG  121 (194)
T ss_pred             CceEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEcc
Confidence            4699999999 8887654  4457899999997 55555553  4677899999999999988743

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=2e-07  Score=71.08  Aligned_cols=63  Identities=21%  Similarity=0.378  Sum_probs=55.2

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC---Ccc
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC---TYQ   82 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d---~~~   82 (114)
                      ..++|++ ++..+++++.||++++|+.-+...+.....|...|.++.|||||+.||+-+.|   .|+
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWS  213 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEE
Confidence            5789999 99999999999999999966666566667889999999999999999998887   576

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.48  E-value=1.2e-06  Score=71.42  Aligned_cols=68  Identities=19%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      .+|+++.-+| +.-+|+.|..||.|++|+..+...+..+.+|...|+.+.|+..|..||+|+.|    .|+..
T Consensus        66 ~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV  137 (888)
T KOG0306|consen   66 AEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV  137 (888)
T ss_pred             ceEEEeeccC-CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec
Confidence            4789999899 88889999999999999999888888999999999999999999999999999    58743

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.48  E-value=8.9e-07  Score=66.32  Aligned_cols=69  Identities=17%  Similarity=0.371  Sum_probs=61.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      +...||.+|+||| .+++|+.|.+-.++++||+.+.++...-.   .|.+.|+.+.||+.|++.++|+.|    .|+
T Consensus       214 qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  214 QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence            4477899999999 99999999999999999999998876553   567899999999999999999998    576

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=3.3e-07  Score=70.91  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      ..+|.+|+-+| .+.+++.|+..|.|++|.+.+|..+..+.+|..+|+++.|+.||.+|.+|+.|    .|...
T Consensus        81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            45699999999 89888888899999999999999998889999999999999999999999999    57644

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.46  E-value=1.5e-06  Score=64.52  Aligned_cols=65  Identities=20%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEE-EEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLA-VASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la-~~s~d   79 (114)
                      |..+|..|.|.+ +++.|+++|.|.+|+.||++++++.++++.|..-|+++.-+.-|-.|+ +++.|
T Consensus        89 HsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD  154 (338)
T KOG0265|consen   89 HSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD  154 (338)
T ss_pred             ccceeEeeeecc-CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC
Confidence            466799999999 999999999999999999999999999999999999998665665555 45444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.45  E-value=1.2e-06  Score=70.28  Aligned_cols=66  Identities=14%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|..-|..|-.++ ++..++++|.||+|++||+...+|+.++..|...|.++.-+|+-..+.+|+.|
T Consensus       211 GHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  211 GHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD  276 (735)
T ss_pred             ccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence            3466688999999 99999999999999999999999999999999999999999999999999888

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.44  E-value=1.7e-06  Score=63.21  Aligned_cols=64  Identities=20%  Similarity=0.427  Sum_probs=55.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|..+-|.. ..+.|++.+.|++|++||.+++..++.+. ...+|+++.+++||++|.++...
T Consensus       142 htg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gs  205 (334)
T KOG0278|consen  142 HTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGS  205 (334)
T ss_pred             CCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCc
Confidence            466788999988 77888898999999999999999888875 56789999999999998776554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.43  E-value=4e-07  Score=70.81  Aligned_cols=61  Identities=21%  Similarity=0.308  Sum_probs=52.1

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++|.+|++.| ++++++|.|.|..++|||+++...+.++.. +-+...++||.-| +||.+.++
T Consensus       294 g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~  354 (545)
T KOG1272|consen  294 GPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGD  354 (545)
T ss_pred             CCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCC
Confidence            4588999999 999999999999999999998877766654 6678899999877 67777776

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.42  E-value=2.6e-07  Score=72.60  Aligned_cols=66  Identities=12%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      ..+++.+| |.++.+++..||.|.+||+.+...++.|++|.+.+.+|.+++||..|.+|+-|    .|+.-
T Consensus       512 CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr  581 (705)
T KOG0639|consen  512 CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR  581 (705)
T ss_pred             hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence            56789999 99998899999999999999999999999999999999999999999999988    58733

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.41  E-value=1.2e-06  Score=65.48  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=56.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC--EEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ--LLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~--~la~~s~d   79 (114)
                      .|..+|++|+.+.   .++++||.|-+|++||++.+..+..+-.|.+.|+++.|.++-.  .|.+|+.|
T Consensus        41 aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   41 AHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             ccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence            5688999999886   6999999999999999999988888888999999999999764  67778777

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.40  E-value=4.4e-06  Score=63.35  Aligned_cols=97  Identities=16%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC-----Ccc--cc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGD--NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC-----TYQ--EA   84 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s--~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d-----~~~--~~   84 (114)
                      +...+.++++++ .+.+++--+  ..|.|.+||..+-+....+..|.+++.+++|+|+|.+||+||.-     .+.  .|
T Consensus       128 n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  128 NPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            344466667776 555665532  35899999999999899999999999999999999999999865     222  22


Q ss_pred             c---cc---CCCCcEEEEEcCcccccceeeecC
Q 033677           85 T---VI---EEPPQIFIIRIDDIQQQSACVGSS  111 (114)
Q Consensus        85 ~---~~---~~~~~i~i~~~~~~~~~~~~~~~~  111 (114)
                      +   |+   ..+..||--..+.+.+..+|.+.|
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence            2   22   335557766677777777777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=3.7e-07  Score=73.19  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             eecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...||+|.|-| -+  ..|++|++|.+|++||.++..|+.++.+|...|+.+.|.|.--++++|+.|
T Consensus       182 HekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  182 HEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             cccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence            467799999987 44  489999999999999999999999999999999999999998999999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=8.7e-07  Score=64.38  Aligned_cols=66  Identities=32%  Similarity=0.437  Sum_probs=55.4

Q ss_pred             eecCeEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVF-SPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f-~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..||..++| ||+-+++|++++-||.|.+|.-.+++  .......|...|++|+|.|.  |-+||++++|
T Consensus        55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence            4789999998 77667999999999999999988773  33445678999999999996  4688999988

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=1.4e-06  Score=65.27  Aligned_cols=59  Identities=15%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEE
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL   73 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~l   73 (114)
                      .|..||.+|+|++ +++.|+|+|.|..|.+||+..+.+++.+. .+.+|..+.|.|-..-.
T Consensus        63 aH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~  121 (405)
T KOG1273|consen   63 AHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNK  121 (405)
T ss_pred             ccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCe
Confidence            5788999999999 99999999999999999999999888774 57889999998855433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.38  E-value=9.6e-07  Score=66.41  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -..|..++-.. .+..+.+++.|.+..+|.++++.|+.++.+|.+.|++|+|+|.+.+++++++|
T Consensus       148 kDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD  211 (481)
T KOG0300|consen  148 KDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD  211 (481)
T ss_pred             ccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence            44588888777 67789999999999999999999999999999999999999999999999998

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.36  E-value=1.8e-06  Score=68.49  Aligned_cols=64  Identities=20%  Similarity=0.229  Sum_probs=54.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +|-.-|.++.|+| .++++++||.|-..++||.. +..++.-..|..+|++++|+|+ +.+|.++-.
T Consensus       184 AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  184 AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             ccCcEEEEeecCc-cccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee
Confidence            3445599999999 89999999999999999987 4556667789999999999999 788887754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.36  E-value=1.9e-06  Score=67.08  Aligned_cols=69  Identities=29%  Similarity=0.331  Sum_probs=57.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC---Ccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC---TYQEA   84 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d---~~~~~   84 (114)
                      ..-|-+.+|+|-++.+++|||-||.|++||.+.. ..+.++ .|..||-.+.|=|.|.++|++++.   .|+..
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence            4558899999944569999999999999999987 444444 689999999999999999999887   68854

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.5e-06  Score=64.49  Aligned_cols=60  Identities=18%  Similarity=0.398  Sum_probs=53.9

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+|.| +++.+++|+.||+|.+|+++++..+..+.+ +..+++++.|+|--..+|++++.
T Consensus       236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~  296 (311)
T KOG1446|consen  236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN  296 (311)
T ss_pred             eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence            4788999 999999999999999999999998888887 68899999999988788887765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=2.8e-06  Score=67.67  Aligned_cols=64  Identities=27%  Similarity=0.440  Sum_probs=53.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec------CCC-----CCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP------RFS-----NSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~------~~~-----~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++|.|..+| ...+|++|+.||.|.+||.++...+..+.      .++     ..|++++|+.||-.||+|++.
T Consensus       175 ~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  175 SGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             cccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC
Confidence            46799999999 88999999999999999999876555543      122     349999999999999999987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=2.9e-06  Score=64.54  Aligned_cols=64  Identities=17%  Similarity=0.326  Sum_probs=54.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .-+|+.+.|++ ++..+++++- |..|.+||.+++..+.......+.++-+.|||||.+|.+++-|
T Consensus       195 h~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d  259 (445)
T KOG2139|consen  195 HNPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD  259 (445)
T ss_pred             CceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence            36899999999 9988888876 5799999999988766555556778999999999998888877

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.32  E-value=2.8e-06  Score=66.88  Aligned_cols=66  Identities=21%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             CCeecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           12 RHHLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        12 ~~~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+|..|..+|+|+| .+ .+|++.|.|..|.+||.+.......+ ....|.++++|+++|.+|++|++.
T Consensus       205 ~~HsAP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~  271 (673)
T KOG4378|consen  205 EAHSAPCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSK  271 (673)
T ss_pred             hhccCCcCcceecC-CccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCC
Confidence            35778899999999 66 57899999999999999987765555 356789999999999999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.32  E-value=9.9e-06  Score=63.13  Aligned_cols=67  Identities=22%  Similarity=0.325  Sum_probs=57.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d   79 (114)
                      .|..||..+.|+|.++.+|++|++|+.+++||+.+......+.+|.+-|.+.+|+|- +.++++|+=|
T Consensus       108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen  108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            467899999999966678999999999999999998876678899999999999995 4577777766

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.31  E-value=3.3e-06  Score=64.68  Aligned_cols=66  Identities=23%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC--------C--------CeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--------S--------RRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--------~--------~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      .|.-+||.|.|+| +++++++|+++|.|.+|-..        +        ....+.+.+|...|-.++|+||+..++++
T Consensus        63 ~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   63 RHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             CCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence            4567899999999 99999999999999999765        2        12233445788999999999999999999


Q ss_pred             eCC
Q 033677           77 SSC   79 (114)
Q Consensus        77 s~d   79 (114)
                      +-|
T Consensus       142 s~d  144 (434)
T KOG1009|consen  142 SVD  144 (434)
T ss_pred             ecc
Confidence            988

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.31  E-value=1.7e-06  Score=65.72  Aligned_cols=61  Identities=23%  Similarity=0.339  Sum_probs=55.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+||.|.|..   .+|++++.|.+|++|++.+.+.++.+.+|...|.++.|.  |+++++|++|
T Consensus       319 HrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD  379 (499)
T KOG0281|consen  319 HRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD  379 (499)
T ss_pred             hhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC
Confidence            456799999987   599999999999999999999999999999999988885  8899999999

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.30  E-value=1.3e-06  Score=65.08  Aligned_cols=68  Identities=24%  Similarity=0.366  Sum_probs=53.8

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCC-eeeEEe--------------cCCCCCeEEEEECCCCCEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSR-RRLFEL--------------PRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~-~~~~~~--------------~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      |...|.+|.|+| ..+ .|++|+.||.|++||++.. .++..+              ..|.+.|+.++|+.||.++++.+
T Consensus       187 Hr~~vlaV~Wsp-~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  187 HRDGVLAVEWSP-SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             ccCceEEEEecc-CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            356799999999 664 6899999999999999864 333322              24567889999999999999888


Q ss_pred             CC----Ccc
Q 033677           78 SC----TYQ   82 (114)
Q Consensus        78 ~d----~~~   82 (114)
                      .|    .|+
T Consensus       266 td~r~r~wn  274 (397)
T KOG4283|consen  266 TDDRIRVWN  274 (397)
T ss_pred             CccceEEee
Confidence            87    476

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=3.9e-06  Score=68.89  Aligned_cols=75  Identities=23%  Similarity=0.431  Sum_probs=65.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcE
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQI   93 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i   93 (114)
                      |..+|++++|++ ++..|++||.+|.+.+|.+.+++ .+-++....+|..+.+|||+.+.+....|           ++|
T Consensus       250 H~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D-----------NqI  316 (792)
T KOG1963|consen  250 HHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED-----------NQI  316 (792)
T ss_pred             cccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC-----------ceE
Confidence            456899999999 99999999999999999999987 44567788999999999999999999988           677


Q ss_pred             EEEEcCcc
Q 033677           94 FIIRIDDI  101 (114)
Q Consensus        94 ~i~~~~~~  101 (114)
                      .+.++.++
T Consensus       317 ~li~~~dl  324 (792)
T KOG1963|consen  317 HLIKASDL  324 (792)
T ss_pred             EEEeccch
Confidence            77766443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.29  E-value=1.6e-06  Score=65.85  Aligned_cols=64  Identities=19%  Similarity=0.343  Sum_probs=56.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |.+.|.++.|..   ..|++|+.|.+|++||.++++++..+..|-..|..+.|+.  .+|++++.|    .|+
T Consensus       236 HtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  236 HTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWD  303 (499)
T ss_pred             CCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEe
Confidence            467789999887   5999999999999999999999999999999999999984  388888888    576

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=8.3e-07  Score=66.91  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      +|...|+++.|+. ++..+++++.|-++++.-+.++++++.+.+|..-|+...|.+||..+.++++|    .|.
T Consensus       304 AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  304 AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             hhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence            5678899999999 99999999999999999999999999999999999999999999999999998    576

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.27  E-value=1.5e-05  Score=57.69  Aligned_cols=68  Identities=21%  Similarity=0.338  Sum_probs=53.6

Q ss_pred             CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee-----eEEecCCCCCeEEEEECC----CCCEEEEEeCC
Q 033677           11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR-----LFELPRFSNSVASLSYNH----GGQLLAVASSC   79 (114)
Q Consensus        11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~-----~~~~~~~~~~v~~v~fsp----dg~~la~~s~d   79 (114)
                      ..+|-..|.+.+|+| .+++|++|+.|.+|++..++...+     ..++.-|++.|..++|-.    .|.+||++..-
T Consensus        85 ~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             ccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence            567788999999999 999999999999999977665432     234667899999999943    35678876654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.27  E-value=1.9e-06  Score=70.27  Aligned_cols=66  Identities=21%  Similarity=0.427  Sum_probs=55.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d   79 (114)
                      |.-.|+.+.|++...++|++||.||.|+.||++......++......|..|+|+|. +.+||++...
T Consensus       132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            34558999999955589999999999999999998888888888889999999994 6678876643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.26  E-value=8.1e-06  Score=60.06  Aligned_cols=68  Identities=12%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |.-|++.|.++. ++.+|.+++.|.+..+|-..+++.+-++.+|.+.|.++..+.+.+.|.+|+.|    .|+
T Consensus         9 HERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    9 HERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             CccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            456789999999 99999999999999999998999999999999999999999999999999999    576

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.24  E-value=1.1e-06  Score=66.79  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=54.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..|.|+|+| ....|++|+.|..++.||++.. ..+...++|-..|.++.|||.|+.|++|+-|
T Consensus       231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD  293 (433)
T KOG0268|consen  231 RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD  293 (433)
T ss_pred             cccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence            357899999 8888999999999999999874 4455567899999999999999999999877

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.23  E-value=2.7e-06  Score=64.77  Aligned_cols=67  Identities=18%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCC-EEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQ-LLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d----~~~   82 (114)
                      .+++++|.++| ...+|++|+.|..|++||.+++   -...++.+|..-|.++.|+|... +|++++-|    .|+
T Consensus       300 ~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  300 NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence            56789999999 8999999999999999999975   23456779999999999999765 67777777    565

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.20  E-value=1.8e-06  Score=65.55  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|+++|.+|.|+| .|+.|++||-|.+|++|..+.+..-..+. .--..|.++.||-|.+++.+||.|
T Consensus       270 dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  270 DHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD  336 (433)
T ss_pred             ccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence            5788999999999 99999999999999999998765322111 112468999999999999999988

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.19  E-value=8.2e-06  Score=65.32  Aligned_cols=67  Identities=27%  Similarity=0.349  Sum_probs=59.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      |..+|+++.++.   .++++|+.||+|++||+.++++++.+.+|...|.++.+.+. ..+.+|+-|    .|+..
T Consensus       330 h~~~V~~v~~~~---~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  330 HTGPVNCVQLDE---PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             ccccEEEEEecC---CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence            788999999985   69999999999999999999999999999999999998765 688889888    57633

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.17  E-value=1.2e-05  Score=62.51  Aligned_cols=65  Identities=17%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee----eEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR----LFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~----~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      ..|+.|+++|-...+|+|+|.|++.++||++.-..    +...-.|..+|.+..|||+|-.|++.+.|.
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence            36999999993347899999999999999986321    223347889999999999887788887773

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.16  E-value=4.8e-06  Score=63.89  Aligned_cols=88  Identities=18%  Similarity=0.383  Sum_probs=70.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Cc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TY   81 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~   81 (114)
                      |..+|.++.|+|++.+.|++||+|.+|.+|++=.+       +.+..+.+|...|-.|.|.|.- ..|++++.|    .|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW  159 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW  159 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence            47889999999988899999999999999998543       3456677899999999999975 467777777    68


Q ss_pred             cccc--c---cCCCCcEEEEEcCcc
Q 033677           82 QEAT--V---IEEPPQIFIIRIDDI  101 (114)
Q Consensus        82 ~~~~--~---~~~~~~i~i~~~~~~  101 (114)
                      +.+.  .   ..++-.||-++.+.+
T Consensus       160 nv~tgeali~l~hpd~i~S~sfn~d  184 (472)
T KOG0303|consen  160 NVGTGEALITLDHPDMVYSMSFNRD  184 (472)
T ss_pred             eccCCceeeecCCCCeEEEEEeccC
Confidence            8553  2   366777888877665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=6.4e-06  Score=64.97  Aligned_cols=67  Identities=16%  Similarity=0.350  Sum_probs=58.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      |..-|-+++|+.   ..+.+|+.||.|..+|++..+.... +..|...|-.++|++|+.+||+|+.|    .|+.
T Consensus       259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             cCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            566799999997   6899999999999999998776655 77899999999999999999999998    4654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.13  E-value=1.2e-05  Score=62.52  Aligned_cols=64  Identities=22%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-CeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-SVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|.+++|+. ++..|++.+.+|.|.+||++...+++.+.+... .-++++.|++|.|||+|+..
T Consensus       344 eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  344 EGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             ccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            44588999998 999999999999999999999999999976543 34688889999999999865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=5.8e-05  Score=56.46  Aligned_cols=84  Identities=19%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECC--CCCEEEEEeCC----Cccccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNH--GGQLLAVASSC----TYQEAT   85 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d----~~~~~~   85 (114)
                      .-|.++.|++ -|+.+++|+.|+++++||.++.    .+...++.|.+.|..|.|-+  -|+.+|+++-|    .|++-+
T Consensus        14 DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~   92 (361)
T KOG2445|consen   14 DLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE   92 (361)
T ss_pred             ceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence            4489999999 9999999999999999997543    45567789999999999965  48999999988    577631


Q ss_pred             ---ccCCCCcEEEEEcCc
Q 033677           86 ---VIEEPPQIFIIRIDD  100 (114)
Q Consensus        86 ---~~~~~~~i~i~~~~~  100 (114)
                         +..+..=+....+++
T Consensus        93 ~~~~~~~~~Wv~~ttl~D  110 (361)
T KOG2445|consen   93 KSEEAHGRRWVRRTTLVD  110 (361)
T ss_pred             cccccccceeEEEEEeec
Confidence               223333344444444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.12  E-value=2.1e-05  Score=59.23  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-----RLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-----~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      |...|++++|+. ++..|+|++.|+.|++||+++.+     +++.- -..+..+.+.|+||.+-+++..
T Consensus        85 H~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~  151 (420)
T KOG2096|consen   85 HKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSV  151 (420)
T ss_pred             cCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEE
Confidence            356799999999 99999999999999999998742     22211 2234678999999988665544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.11  E-value=2.8e-05  Score=59.92  Aligned_cols=64  Identities=9%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC----CCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF----SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~----~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|++|..++ ++..+.+++-|.++.+.|+++.+....+...    ....+.+.|||+++|+|+|+.|
T Consensus       341 gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  341 GGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             CcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence            44699999999 9988999999999999999998766665422    3348899999999999999998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.10  E-value=1.3e-05  Score=60.45  Aligned_cols=68  Identities=13%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      -...+-++-+| .+.++++.+.|-++++||++.. ..+..|++|...|+++.|+.|.+ +++|+.|    .|+.-
T Consensus       314 d~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  314 DSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLR  386 (481)
T ss_pred             chhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeec
Confidence            34567778899 8999999999999999999854 34456789999999999998664 6678877    57643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.10  E-value=3.1e-05  Score=64.26  Aligned_cols=64  Identities=25%  Similarity=0.332  Sum_probs=60.6

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..|+..++|+. ++++++.||+|-.|++-+..+....+.+.+|..+|.++.|+|.+++||+.+.|
T Consensus        96 tlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d  159 (933)
T KOG1274|consen   96 TLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD  159 (933)
T ss_pred             eccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence            56889999999 99999999999999999999998888999999999999999999999999988

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.09  E-value=2.1e-05  Score=58.75  Aligned_cols=69  Identities=16%  Similarity=0.419  Sum_probs=53.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----------------------------------------
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-----------------------------------------   52 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-----------------------------------------   52 (114)
                      |-|.|.++-|-|.+..+|.+++-|.++++||..+-+...                                         
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence            478888999988777888889889999999977643332                                         


Q ss_pred             ---EecCCCCCeEEEEECCCCC-EEEEEeCC----Ccc
Q 033677           53 ---ELPRFSNSVASLSYNHGGQ-LLAVASSC----TYQ   82 (114)
Q Consensus        53 ---~~~~~~~~v~~v~fspdg~-~la~~s~d----~~~   82 (114)
                         .+.+|...|.++.|+|..+ .||+|+.|    .|+
T Consensus       180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD  217 (397)
T KOG4283|consen  180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD  217 (397)
T ss_pred             ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence               2334668899999999876 57788888    576

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.08  E-value=9.2e-06  Score=65.75  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=55.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe----eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR----RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~----~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..-|+.|+|+| ++.+|++.+.|.++.+|......    .....+.|..-|.++.|+|++++||++|.|
T Consensus       571 HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  571 HSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             cceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence            456799999999 99999999999999999875432    122256788899999999999999999999

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.07  E-value=1.9e-05  Score=64.63  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..|......|...| .+.++++...|.++.++|+.+++++.+..+|...|+.+.|.+|-+.|.+.++|
T Consensus       637 s~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  637 SRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             cccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence            344555577889999 99999999999999999999999999999999999999999999999999988

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.05  E-value=1.2e-05  Score=41.52  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           49 RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        49 ~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +++..+.+|..+|++|+|+|++.+||+++.|
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D   32 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSD   32 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETT
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCC
Confidence            5678899999999999999999999999988

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.04  E-value=1e-05  Score=65.43  Aligned_cols=63  Identities=24%  Similarity=0.367  Sum_probs=55.6

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -+|.++.||| ...-|+..+..|.+++||+.+++.+..+.+|.+.|.+..|+.||.+||+++.|
T Consensus       129 ~~vE~l~fHp-TaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKd  191 (1012)
T KOG1445|consen  129 VIVECLRFHP-TADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKD  191 (1012)
T ss_pred             eEEEEeeccc-CcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCC
Confidence            4588999999 76555555568999999999999999999999999999999999999999887

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.02  E-value=5.9e-05  Score=58.68  Aligned_cols=66  Identities=12%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             CeecCeEEEEECCC-CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPL-SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~-~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +|.-+|+++...+- ....++|+|.|.++++||+..+..+.++ ..+.++++++.+|-++.+.+|+.+
T Consensus       172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCc
Confidence            46678998887661 3468999999999999999999877665 467889999999999999999988

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.00  E-value=7.7e-05  Score=56.00  Aligned_cols=98  Identities=13%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATVI   87 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~~   87 (114)
                      ..||++-+|++ +...++.+-....|.+|.....   +...++..|+..|+.|.|+|.+..|++++.|    .|...+..
T Consensus        10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45899999999 9999999999999999987754   4667788999999999999999899999988    57654322


Q ss_pred             -CCCCcEEEEEcCcc-----cccce--eeecCCC
Q 033677           88 -EEPPQIFIIRIDDI-----QQQSA--CVGSSSR  113 (114)
Q Consensus        88 -~~~~~i~i~~~~~~-----~~~~~--~~~~~~~  113 (114)
                       -.|+-+.+|..-+.     .+...  .+||++|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar  122 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR  122 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence             33344444444332     23232  7888876

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.97  E-value=4.9e-05  Score=60.00  Aligned_cols=64  Identities=14%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee-eEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR-LFEL-PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~-~~~~-~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+++.++|+| ++.+|+.|+.|+.|++|.+..... .... +-+..+|+.+.||+|+++|.+-+.|
T Consensus       447 ~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  447 NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence            56799999999 999999999999999998875432 2222 2344899999999999999988887

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=97.96  E-value=2.1e-05  Score=64.42  Aligned_cols=62  Identities=16%  Similarity=0.278  Sum_probs=54.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGD--NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s--~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..++++|+|+| ++.++++|-  ..-.+++|++.....+..+..|...|++++|+|.++|+++.+
T Consensus        78 Rk~~t~vAfS~-~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVG  141 (1080)
T KOG1408|consen   78 RKPLTCVAFSQ-NGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVG  141 (1080)
T ss_pred             CcceeEEEEcC-CCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeec
Confidence            45899999999 999999875  456899999999888889999999999999999999988544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=97.96  E-value=2.6e-05  Score=61.86  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=48.9

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH   68 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp   68 (114)
                      ....+|+|+| |+.+|++|++|-.|.+|.+..++.+..-++|..-|+.|+|.|
T Consensus       333 GGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  333 GGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            3578999999 999999999999999999999999988899999999999986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=3.3e-05  Score=61.51  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=53.5

Q ss_pred             CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +......|.+++++| +...|+.|..||.|.+||...+...  +....-.++-++|+|+|.++++|+.-
T Consensus       255 sipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  255 SIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             EEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCC
Confidence            344556789999999 9999999999999999999766432  33445667899999999999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=9.9e-06  Score=68.17  Aligned_cols=70  Identities=23%  Similarity=0.449  Sum_probs=55.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCC-CCEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHG-GQLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspd-g~~la~~s~d----~~~   82 (114)
                      .|.++|.+|.|+++.+++|++|+.||.|.|||+.+-+......  ...+.|.+++|+.. .++||+++.+    .|+
T Consensus       114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            4677899999999555799999999999999998755444432  24678999999874 5688888776    466

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.92  E-value=0.00019  Score=51.23  Aligned_cols=59  Identities=14%  Similarity=0.215  Sum_probs=46.0

Q ss_pred             eEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +..++|+| ++..+ ++++.++.|.+||..+++....+..+.. +..++|+|+|+.+++++.
T Consensus        33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANE   92 (300)
T ss_pred             CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcC
Confidence            56799999 88765 6778899999999998887766654433 567899999997776654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=2.4e-05  Score=56.96  Aligned_cols=73  Identities=22%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECC--CCCEEEEEeCC----Cccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNH--GGQLLAVASSC----TYQE   83 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d----~~~~   83 (114)
                      +|...|-++.+.- -+.+|+|++.|++|+++..++.   +.+.++.+|.+||..++|-.  .|.+||+++-|    .|.+
T Consensus         9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            3445566666665 6789999999999999999874   45677889999999999965  79999998877    5665


Q ss_pred             ccc
Q 033677           84 ATV   86 (114)
Q Consensus        84 ~~~   86 (114)
                      .+.
T Consensus        88 ~~g   90 (299)
T KOG1332|consen   88 ENG   90 (299)
T ss_pred             CCC
Confidence            543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.91  E-value=4.3e-05  Score=61.93  Aligned_cols=80  Identities=18%  Similarity=0.262  Sum_probs=64.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc-ccc-
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE-ATV-   86 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~-~~~-   86 (114)
                      .|..+|+++.+-| .+ .++||+.|.+|++|.-  ++.++++.+|.+-|..+++=|++. |++++-|    .|+. |+- 
T Consensus       138 gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l  212 (745)
T KOG0301|consen  138 GHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVL  212 (745)
T ss_pred             CcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCcee
Confidence            4678899999999 65 8999999999999976  778889999999999999988765 5567777    6886 332 


Q ss_pred             ---cCCCCcEEEEE
Q 033677           87 ---IEEPPQIFIIR   97 (114)
Q Consensus        87 ---~~~~~~i~i~~   97 (114)
                         ..+.+.||...
T Consensus       213 ~~~~ghtn~vYsis  226 (745)
T KOG0301|consen  213 LEMHGHTNFVYSIS  226 (745)
T ss_pred             eeeeccceEEEEEE
Confidence               25566777777

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=97.91  E-value=8.4e-06  Score=62.50  Aligned_cols=66  Identities=24%  Similarity=0.355  Sum_probs=60.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      |...|..++|.| +++.+++++.|..+++||+..+.....+.+|..-+..++|.|-++++++-+.|.
T Consensus       122 h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  122 HRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             cccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence            456688999999 999999999999999999999999988889999999999999999999888774

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=97.89  E-value=9.6e-05  Score=55.10  Aligned_cols=72  Identities=11%  Similarity=0.219  Sum_probs=59.6

Q ss_pred             cCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677            8 SKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus         8 ~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      +++..++..|+++..|+..+.++|.+.+.|-+..+||++++.   ...++..|+.+|..|+|...| ..||+.+.|
T Consensus       143 ~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaD  218 (364)
T KOG0290|consen  143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGAD  218 (364)
T ss_pred             cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCC
Confidence            334556788999999998666999999999999999999863   345567999999999999976 478888777

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.89  E-value=0.00021  Score=50.95  Aligned_cols=58  Identities=17%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             EEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           19 NDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        19 ~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..++|+| +++.+ ++.+.++.+.+||.++++....+ .+...+..++|+|+|++|+++..
T Consensus       210 ~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       210 VGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             cceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcC
Confidence            4688999 88764 44556778999999988766544 34457889999999999887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=0.00015  Score=54.02  Aligned_cols=86  Identities=14%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc----
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA----   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~----   84 (114)
                      .|..|+.+++|.+ . ..+++|+.||.|+.+|+.+++.. .+..|..+|++|.+++-...+.+|+-|    .|+--    
T Consensus        52 ~~~~plL~c~F~d-~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~  128 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-E-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV  128 (323)
T ss_pred             ecCCceeeeeccC-C-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc
Confidence            4577899999997 4 57899999999999999988754 466899999999999866677788877    56622    


Q ss_pred             -cccCCCCcEEEEEcCcc
Q 033677           85 -TVIEEPPQIFIIRIDDI  101 (114)
Q Consensus        85 -~~~~~~~~i~i~~~~~~  101 (114)
                       ..+..+..||-..+...
T Consensus       129 ~~~~d~~kkVy~~~v~g~  146 (323)
T KOG1036|consen  129 VGTFDQGKKVYCMDVSGN  146 (323)
T ss_pred             ccccccCceEEEEeccCC
Confidence             11344447777766554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.89  E-value=9.7e-05  Score=57.67  Aligned_cols=66  Identities=9%  Similarity=0.218  Sum_probs=52.8

Q ss_pred             CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC--eeeEEecCCCCCeEEEEECCCCC-EEEEEeC
Q 033677           12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR--RRLFELPRFSNSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~~~~~~v~~v~fspdg~-~la~~s~   78 (114)
                      ++...+|++|.||| ...++++++.||.+++|.++..  ..+..+.....||.+.+|.|+|+ .+++++.
T Consensus       210 ~ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r  278 (514)
T KOG2055|consen  210 HPSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR  278 (514)
T ss_pred             CcCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc
Confidence            45567899999999 8899999999999999987643  34445555678999999999998 5555554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.88  E-value=1.2e-05  Score=65.35  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|++|+|+. ++.+|++|+.|..|.+|..+-...++  -.|.+.|.++.|+|-...||+++-.
T Consensus        55 tVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs  114 (1081)
T KOG1538|consen   55 TVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS  114 (1081)
T ss_pred             eEEEEEEcc-CCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchh
Confidence            399999999 99999999999999999875433222  2577778888888877777776543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=97.88  E-value=4.8e-05  Score=60.35  Aligned_cols=73  Identities=19%  Similarity=0.185  Sum_probs=58.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeC------CCC----eeeEEecCCCCCeEEEEECCCCCEEEEEeCC---
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA------QSR----RRLFELPRFSNSVASLSYNHGGQLLAVASSC---   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~------~~~----~~~~~~~~~~~~v~~v~fspdg~~la~~s~d---   79 (114)
                      .|..||.++++.+ .++.+++||.||+|+.|++      .+.    .....+.+|.+.|..+++|+....|++++.|   
T Consensus       342 aH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTv  420 (577)
T KOG0642|consen  342 AHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTV  420 (577)
T ss_pred             cccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceE
Confidence            3567899999999 8999999999999999933      221    2223467899999999999988889999888   


Q ss_pred             -Ccccccc
Q 033677           80 -TYQEATV   86 (114)
Q Consensus        80 -~~~~~~~   86 (114)
                       .|+..++
T Consensus       421 r~w~~~~~  428 (577)
T KOG0642|consen  421 RLWEPTEE  428 (577)
T ss_pred             EeeccCCc
Confidence             5775543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.88  E-value=0.00015  Score=52.05  Aligned_cols=65  Identities=29%  Similarity=0.541  Sum_probs=53.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d   79 (114)
                      |...|..++|+| ++..++.++. |+.+++|+......+..+..|...|..++|+|++. +++.++.|
T Consensus       154 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         154 HSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             CcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence            455688999999 8888888885 99999999998777888888899999999999998 44443545

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.88  E-value=0.00016  Score=58.54  Aligned_cols=63  Identities=13%  Similarity=0.348  Sum_probs=56.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|.+|+|.+ . ..|++.+.+|.|..||+.+.+..+......++|.+++.+|.+..+++|+.|
T Consensus        69 drsIE~L~W~e-~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd  131 (691)
T KOG2048|consen   69 DRSIESLAWAE-G-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDD  131 (691)
T ss_pred             CCceeeEEEcc-C-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCC
Confidence            34589999997 4 566788889999999999999999998889999999999999999999887

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.87  E-value=6.1e-05  Score=61.09  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=58.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      |...|.++++-| + ..|++++.||.|++||+ +++++....+|..-|-+++..+++..+++++.|    .|..+
T Consensus       178 HtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  178 HTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             chhheeeeEEec-C-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            566799999998 4 46889999999999999 688888999999999999988888899999888    58765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.86  E-value=0.00014  Score=56.66  Aligned_cols=65  Identities=17%  Similarity=0.340  Sum_probs=52.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+.+.|++|+..| ..+++++|+.+|.|++|-+.++    +.+..+ ...+-|++++|+++|+.+.+|.+-
T Consensus       378 ~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-s~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  378 NGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-SLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeec-ccccEEEEEEEccCCCEEEEeccc
Confidence            3346899999999 8899999999999999999887    233333 356779999999999977777665

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.83  E-value=0.00017  Score=55.94  Aligned_cols=62  Identities=23%  Similarity=0.278  Sum_probs=44.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..++...+|+| +++.|+..+.+   ..|.+||+++++... +.........++|+|||+.|+.++.
T Consensus       203 ~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~  267 (429)
T PRK01742        203 SQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASS  267 (429)
T ss_pred             CCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEe
Confidence            34688999999 99888776643   369999998875322 2222333457899999999888653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.83  E-value=1.1e-05  Score=63.72  Aligned_cols=63  Identities=27%  Similarity=0.340  Sum_probs=54.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+.+|.+++ ++..|.||+-|.+|+-||++++..+.+. +...+|.++.++|++++||+|-..
T Consensus       551 tDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMen  613 (705)
T KOG0639|consen  551 TDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMEN  613 (705)
T ss_pred             CCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeeccc
Confidence            45578999999 9999999999999999999998765433 346789999999999999998766

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.82  E-value=0.0001  Score=59.14  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=57.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      |...|.+++|.. -+..+++|+.|.++++||..++.|...+.+|...|.++..-+  .++++|+.|    .|+.-
T Consensus       248 H~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  248 HFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             CCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEecc
Confidence            467799999986 678999999999999999999999999999999999988754  467777888    56533

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=7.6e-05  Score=57.28  Aligned_cols=62  Identities=26%  Similarity=0.320  Sum_probs=55.3

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|.+++.++ ++++++.|+.||.|-+++..+.+.++..+ .|...|+.+.|+||.++++.-+.+
T Consensus       283 siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~  345 (398)
T KOG0771|consen  283 SISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD  345 (398)
T ss_pred             cceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence            588999999 99999999999999999999888776665 788899999999999999986655

>smart00320 WD40 WD40 repeats

Probab=97.80  E-value=5.5e-05  Score=36.57  Aligned_cols=29  Identities=31%  Similarity=0.673  Sum_probs=26.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWD   44 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD   44 (114)
                      ..+|+++.|+| ...++++++.|+.+++||
T Consensus        12 ~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            45699999999 888999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=0.00014  Score=54.90  Aligned_cols=57  Identities=18%  Similarity=0.345  Sum_probs=45.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEECCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYNHGG   70 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fspdg   70 (114)
                      |...|+.|.|+|.+.++|++||.||.|.++|+.....   +.....+...|..+.|..++
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            5667999999996679999999999999999976421   22233567789999999888

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.00045  Score=53.59  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=46.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..++...+|+| +++.|+..+.   +..|.+||+.+++.. .+......+...+|||||+.|+...
T Consensus       201 ~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~  264 (435)
T PRK05137        201 SSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSL  264 (435)
T ss_pred             CCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEE
Confidence            34688999999 9987776553   468999999887643 3445566777899999999887554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.76  E-value=0.00028  Score=54.07  Aligned_cols=59  Identities=15%  Similarity=0.245  Sum_probs=45.8

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+.|+| +++.+++++.||.|.++|+.+++.+.+++. ......+++|+||++++++...
T Consensus        40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~   98 (369)
T PF02239_consen   40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYE   98 (369)
T ss_dssp             EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEE
T ss_pred             eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecC
Confidence            3578999 999988889999999999999998888864 4456789999999999887643

...

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.74  E-value=4.9e-05  Score=61.27  Aligned_cols=69  Identities=14%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE--ecCCCCCeEEEEECCCC-CEEEEEeCC----Ccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE--LPRFSNSVASLSYNHGG-QLLAVASSC----TYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~--~~~~~~~v~~v~fspdg-~~la~~s~d----~~~   82 (114)
                      .|-..|.++.|-| -...|++++.|.++++||+.+.++...  +.+|...|.+++|.|+. ..|++|+.|    .|+
T Consensus        98 aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   98 AHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            3455699999999 778899999999999999999887765  78999999999999965 578889888    576

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=97.73  E-value=6.1e-05  Score=59.79  Aligned_cols=67  Identities=15%  Similarity=0.264  Sum_probs=58.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC--------CeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS--------RRRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~--------~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      .|...|..+.|+| ....|++++.||.|++|.++.        -+.+.+|.+|.+||.++++.++++.+.+|+.|.
T Consensus       292 s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             cchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            4566788999999 888999999999999999932        256788899999999999999999999999983

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00013  Score=58.03  Aligned_cols=61  Identities=16%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|-|++-|+| .++.|+.+|-+   |.+.+||+.+.+++..+....  -+-+.|+|||++|.+++.-
T Consensus       312 gpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  312 GPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence            4578999999 89988887764   899999999988877766443  3568999999999988864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00015  Score=54.25  Aligned_cols=66  Identities=18%  Similarity=0.361  Sum_probs=53.6

Q ss_pred             CeecCeEEEEECCCCC---CEEEEEeCCCcEEEEeCCCC--------------------eeeEEecCCCCCeEEEEECCC
Q 033677           13 HHLVPVNDVVFSPLSR---GAFVTGDNEGYVAAWDAQSR--------------------RRLFELPRFSNSVASLSYNHG   69 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~---~~~~t~s~Dg~I~iwD~~~~--------------------~~~~~~~~~~~~v~~v~fspd   69 (114)
                      .|..||.+|+|.|.-+   .+|++++.|| |+||.++..                    +.+..+.+|..+|..+.|+=.
T Consensus       221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            5688999999999334   5799999999 999998731                    123345578899999999999


Q ss_pred             CCEEEEEeCC
Q 033677           70 GQLLAVASSC   79 (114)
Q Consensus        70 g~~la~~s~d   79 (114)
                      |.+|++.+.|
T Consensus       300 GtiLsStGdD  309 (361)
T KOG2445|consen  300 GTILSSTGDD  309 (361)
T ss_pred             eeEEeecCCC
Confidence            9999988877

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.72  E-value=3.2e-05  Score=60.47  Aligned_cols=66  Identities=18%  Similarity=0.359  Sum_probs=59.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .++..++-+| -+..+-+|...|+|.+|.....+.+.++..|.++|.+|++.++|+|||+++-|    .|+
T Consensus       252 G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  252 GRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             CccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence            3466778899 77889999999999999999999888888999999999999999999999988    576

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00027  Score=57.06  Aligned_cols=62  Identities=23%  Similarity=0.388  Sum_probs=54.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-EEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-SLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-~v~fspdg~~la~~s~d   79 (114)
                      -.|.-+.|+| .-.+||.+..+|.|.++.+. .+.+..++-++.+++ +++|.|||++||+|-.|
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd   83 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD   83 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC
Confidence            3467889999 88899999999999999988 666778876777777 99999999999999988

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.71  E-value=0.00029  Score=60.46  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=50.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      ...|+.++.++..+.+|++||.||+|++||.+.-       +...++......+..+...+.|..+|+++.|.
T Consensus      1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            3447788887724489999999999999998752       22233334567888999999999999998883

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.70  E-value=0.00012  Score=60.38  Aligned_cols=73  Identities=25%  Similarity=0.379  Sum_probs=58.5

Q ss_pred             CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC--C--eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS--R--RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~--~--~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      .+|..++++.+++| .++.+++|..||.|.+|.--.  .  .....+.=|..+|++++|++||.+|.+|+..    .|..
T Consensus       202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence            47888899999999 999999999999999994322  1  1122344467899999999999999999887    6886


Q ss_pred             cc
Q 033677           84 AT   85 (114)
Q Consensus        84 ~~   85 (114)
                      +.
T Consensus       281 ~T  282 (792)
T KOG1963|consen  281 ET  282 (792)
T ss_pred             cC
Confidence            64

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.69  E-value=0.00011  Score=55.10  Aligned_cols=66  Identities=18%  Similarity=0.278  Sum_probs=54.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC-CCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-SRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|-..|++|.|+| ..+.|++++.|..-++|... .++  ....+..+...+++|.|+|.+..||+|++-
T Consensus        53 ~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga  121 (361)
T KOG1523|consen   53 EHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA  121 (361)
T ss_pred             hhCcceeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence            4567799999999 88899999999999999884 332  223344677889999999999999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.68  E-value=0.00036  Score=56.41  Aligned_cols=60  Identities=15%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             eEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEec--------CC---CCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELP--------RF---SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~--------~~---~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |+.+.|-  |..+|+++|. |+.|++||++.........        .+   ...++++.....|.+|.+.+.|
T Consensus       221 vTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  221 VTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             eEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            5555554  6778888888 9999999999865544332        12   2246677777778877766667

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.68  E-value=0.00022  Score=52.21  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE-CCCCCEEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY-NHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f-spdg~~la~~s~d----~~~   82 (114)
                      +-.||++.+.| ..+-++.++.|+.++.||+++++....+++|.+-|.++.- +.++ .+.+|+.|    .|+
T Consensus       114 vPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd  184 (325)
T KOG0649|consen  114 VPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWD  184 (325)
T ss_pred             CCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEe
Confidence            44689999999 6666667778999999999999999999999999999998 4455 45678888    576

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=97.68  E-value=0.00018  Score=56.97  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=59.4

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC-----CcccccccCCCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSC-----TYQEATVIEEPP   91 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d-----~~~~~~~~~~~~   91 (114)
                      |.-|.|+|....+|.+++.+|.|.+||+........+ ..|..|...|+|+|..+.|.+.-++     .|+.+.....+.
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~  246 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR  246 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence            4578899933467889999999999999987766554 4788999999999987655444444     344443334444


Q ss_pred             cEEEEEcCcc
Q 033677           92 QIFIIRIDDI  101 (114)
Q Consensus        92 ~i~i~~~~~~  101 (114)
                      -.|-++++.+
T Consensus       247 l~y~~Plstv  256 (673)
T KOG4378|consen  247 LTYSHPLSTV  256 (673)
T ss_pred             eeecCCccee
Confidence            5666666665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.67  E-value=0.0006  Score=52.86  Aligned_cols=62  Identities=26%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..++...+|+| +++.|+..+.+   ..|.+||+.+++... +......+...+|+|||+.||....
T Consensus       195 ~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~  259 (427)
T PRK02889        195 PEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALS  259 (427)
T ss_pred             CCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEc
Confidence            34678899999 99887766543   369999999886433 3334455678999999998886543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.63  E-value=0.00081  Score=52.31  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +|..+|.++.|+|.....|++|+.|+++.+.|.+...+....-...+.|-.++|.|.....+.++.|
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            5788999999999667899999999999999999643332222456779999999987655444444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.0011  Score=53.93  Aligned_cols=65  Identities=20%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE--ecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE--LPRFSNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~--~~~~~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      ..+|++++.+| .+..++.|++||.+...+...+...+.  +....+.|.+++|+|++..+|.|+.|.
T Consensus       110 gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  110 GGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             CcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence            56799999999 889999999999887777776654432  224457899999999999999999994

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.57  E-value=0.0017  Score=46.56  Aligned_cols=64  Identities=36%  Similarity=0.584  Sum_probs=51.2

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|..++|.| ++. .+++++.|+.|++||...+..+. .+..+.... ...|+|++.++++++.|
T Consensus       197 ~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d  262 (466)
T COG2319         197 HTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD  262 (466)
T ss_pred             CCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence            567899999999 876 56666999999999998777776 577776664 44899999888877776

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.56  E-value=3.6e-05  Score=56.54  Aligned_cols=65  Identities=18%  Similarity=0.257  Sum_probs=52.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      ...|.+++-+|..++++++|+.||.+.+||.++.... ..+..|..++..+-|.| +++.|.+++.|
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            4458899999955578889999999999999987433 34567899999999999 56778888887

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.55  E-value=0.00058  Score=53.35  Aligned_cols=65  Identities=17%  Similarity=0.340  Sum_probs=49.0

Q ss_pred             eecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      +..+|++++||| ..  .++++|..-|.|-+||+.+.    .-+..+..|..+|+++.|+|.. ..+.+.|-|
T Consensus       185 ~~~Rit~l~fHP-t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  185 TDRRITSLAFHP-TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             cccceEEEEecc-cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            355699999999 65  57888888999999999632    3455677899999999999965 344444444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00044  Score=52.24  Aligned_cols=60  Identities=12%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +|..+-... .+.+|++++.|..|.+||++ ++.+..+..........+.||+|+.+|++.-
T Consensus       189 ~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF  248 (420)
T KOG2096|consen  189 DIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF  248 (420)
T ss_pred             ceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC
Confidence            445566665 66899999999999999999 7778877766666778899999999987664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.00073  Score=53.84  Aligned_cols=67  Identities=18%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .-|-.+|+++.++. +-.-|.+++.|+.+..|+......++.++.....+.+++++|||.++++|+..
T Consensus        99 ~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~  165 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ  165 (541)
T ss_pred             CCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce
Confidence            34567799999998 77889999999999999999999999999888999999999999999998876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.51  E-value=0.00016  Score=57.67  Aligned_cols=64  Identities=13%  Similarity=0.266  Sum_probs=50.3

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +|..+|.+-.|+| ++.-|+++|.||.|++|.. ++-....+.....+|.+++|.|+.+-+..+-+
T Consensus       102 AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen  102 AHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             hhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence            5678899999999 9999999999999999974 44433344455778999999999876655443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=97.51  E-value=0.00031  Score=52.45  Aligned_cols=65  Identities=18%  Similarity=0.356  Sum_probs=50.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee------eEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR------LFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~------~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      |...||+|+|.|.....|.|+|+|..+-+||+.....      +..+ .....|+.+.|++ .+.++|++...
T Consensus       286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecC
Confidence            4667999999996678999999999999999976422      1112 2467899999996 46789988754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.50  E-value=0.0015  Score=49.74  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             CeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ++...+|+| +++.|+....+   ..|++||+.+++... +......+.+++|+|||+.|+...
T Consensus       191 ~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~  252 (417)
T TIGR02800       191 PILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSL  252 (417)
T ss_pred             ceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE
Confidence            477888999 99887776543   479999998875432 334455667899999999887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.48  E-value=0.00024  Score=53.70  Aligned_cols=58  Identities=24%  Similarity=0.391  Sum_probs=48.5

Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           21 VVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        21 v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ....| +++.|++|+.||.|++||+++ +.....+..+...++.++++|-=-++|++++.
T Consensus       303 FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  303 FDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            34468 789999999999999999998 56566677888999999999986678887765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.47  E-value=0.0011  Score=51.48  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             cCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .++...+|+| +++.|+..+.+   ..|.+||+.+++.. .+..........+|+|||+.|+...
T Consensus       204 ~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~  266 (433)
T PRK04922        204 EPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTL  266 (433)
T ss_pred             CccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEE
Confidence            3577889999 99888776643   46999999887643 3333444556889999999887543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.00021  Score=60.48  Aligned_cols=70  Identities=16%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCCCcc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSCTYQ   82 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d~~~   82 (114)
                      .|...|.++.|++.|..++++++.|+.|..|+.++++.+..+.....-+..+.|+|.. .+||+++-|.+.
T Consensus       251 ~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  251 GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence            3456799999999555899999999999999999999999998878889999999954 589988888654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.45  E-value=6.1e-05  Score=62.50  Aligned_cols=68  Identities=21%  Similarity=0.364  Sum_probs=62.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|.++.|.. .+..+++|++|..+++|...++.++....+|...|+.++.+.+...+|+++-|    .|.
T Consensus       189 H~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  189 HRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             hhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            355699999999 99999999999999999999999999999999999999999888889999888    576

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00068  Score=50.59  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEE-ecCCCCCeEEEEECC-CCCEEEEEeCCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFE-LPRFSNSVASLSYNH-GGQLLAVASSCT   80 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~-~~~~~~~v~~v~fsp-dg~~la~~s~d~   80 (114)
                      .|-+++..+.|+-++.+++++||+||.+..||++. ++.+.. .+.|...|.+|.=|| .+.++|+|+=|+
T Consensus       163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe  233 (339)
T KOG0280|consen  163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE  233 (339)
T ss_pred             ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc
Confidence            46788889999875568999999999999999993 344433 346777888888777 578999998773

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.41  E-value=0.0017  Score=50.31  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=43.8

Q ss_pred             CeEEEEECCCCCCEE-EEEeCCCc--EEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAF-VTGDNEGY--VAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~-~t~s~Dg~--I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+...+|+| ++..| ++.+.+|.  |.+||+.++.. ..+..+........|+|||+.|+..+.
T Consensus       247 ~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~  309 (435)
T PRK05137        247 MTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESD  309 (435)
T ss_pred             cccCcEECC-CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEEC
Confidence            456789999 98765 46666664  77789887764 445555555678999999999987764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.39  E-value=0.0029  Score=48.77  Aligned_cols=60  Identities=17%  Similarity=0.203  Sum_probs=42.9

Q ss_pred             cCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .++...+|+| +++.|+..+.+   ..|.+||+.+++.. .+......+...+|+|||+.||...
T Consensus       199 ~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~  261 (430)
T PRK00178        199 EPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVL  261 (430)
T ss_pred             CceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEE
Confidence            3567889999 99887665543   36889999887643 3333344556789999999888654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.38  E-value=0.0023  Score=49.72  Aligned_cols=60  Identities=17%  Similarity=0.104  Sum_probs=43.7

Q ss_pred             eEEEEECCCCCCEEEE-EeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVT-GDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t-~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+.|+| +++.|+. .+.+|  .|.+||+.+++.. .+......+....|+|||+.|+..+.+
T Consensus       245 ~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        245 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             cCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCC
Confidence            34679999 9976664 44455  5888999887644 344444567889999999998877754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.37  E-value=0.0018  Score=50.25  Aligned_cols=58  Identities=17%  Similarity=0.255  Sum_probs=42.1

Q ss_pred             EEEEECCCCCCEEEEEe-CCCcEEEE--eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           19 NDVVFSPLSRGAFVTGD-NEGYVAAW--DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s-~Dg~I~iw--D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..++|+| +++.|+.++ .+|.+.+|  |+.++. ...+..+...+...+|+|||+.|+.++.
T Consensus       251 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        251 GAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             CceeECC-CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence            4689999 998777654 67866554  666555 4445556667889999999998877653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.35  E-value=0.001  Score=53.58  Aligned_cols=65  Identities=18%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEE----ecCCCCCeEEEEECCCC--CEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFE----LPRFSNSVASLSYNHGG--QLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~----~~~~~~~v~~v~fspdg--~~la~~s~d   79 (114)
                      ..+|.++.|+|++.++++.|..+|.|.+||++.+..  ...    ...|..+++.+.|-++-  .-|++++.|
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD  314 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD  314 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence            456999999997778999999999999999997654  211    12678999999996654  448888888

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.34  E-value=0.0035  Score=48.73  Aligned_cols=60  Identities=13%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .++...+|+| +++.|+..+.   +..|.+||+.+++.. .+......+...+|||||+.||...
T Consensus       199 ~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~  261 (429)
T PRK03629        199 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFAL  261 (429)
T ss_pred             CceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEE
Confidence            3578999999 9987765432   357899999887532 2333334456789999999888654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.34  E-value=0.0009  Score=56.33  Aligned_cols=63  Identities=14%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...|.++.++- ++.++++.|+|.++++|++++++... ...+|...|..++|.|+  .+++++.|
T Consensus       174 HeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  174 HEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             cCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc
Confidence            356689999998 99999999999999999999988765 55689999999999998  78888888

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.33  E-value=0.00061  Score=51.51  Aligned_cols=62  Identities=16%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             eEEEEECC--CC-CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           18 VNDVVFSP--LS-RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p--~~-~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      ...++|.-  .+ +-+++.||.-|.|++.|+.++++...+.+|...|+.+.|.|+. +++.++|.|
T Consensus        92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD  157 (385)
T KOG1034|consen   92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD  157 (385)
T ss_pred             eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence            44555543  01 2367888899999999999999999999999999999999975 688889988

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.33  E-value=0.00066  Score=49.76  Aligned_cols=38  Identities=24%  Similarity=0.535  Sum_probs=30.0

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR   56 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~   56 (114)
                      |-++.--. ....+++|+.||++++||.++++++..+..
T Consensus       159 vH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  159 VHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             eeeeeecc-cCcceeecCCCccEEEEeccccceeEEecc
Confidence            55666533 445789999999999999999998887753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.00092  Score=51.33  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCCCCEEEEEeCCCcccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHGGQLLAVASSCTYQEA   84 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspdg~~la~~s~d~~~~~   84 (114)
                      .++|.++...| .++++++|..-|.+..+|.+.+..... +++..+.|++|-..|.+.++|+++-|.|-+.
T Consensus       247 E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  247 ENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             cCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence            56788999999 999999999999999999999987765 7788999999999999999999999977644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.0011  Score=52.77  Aligned_cols=55  Identities=16%  Similarity=0.331  Sum_probs=48.5

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-----CCEEEE
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-----GQLLAV   75 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-----g~~la~   75 (114)
                      +..++..| ++.++++++  +.|++||+++.+.+..|.+|..+|++++|-.+     |.++.+
T Consensus       147 ~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  147 VSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             cceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeee
Confidence            56889999 899999886  68999999999999999999999999999776     666654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=97.28  E-value=0.001  Score=49.73  Aligned_cols=64  Identities=16%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             ecCeEEEEECC-CCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCE-EEEEeCC
Q 033677           15 LVPVNDVVFSP-LSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQL-LAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p-~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~-la~~s~d   79 (114)
                      ....++-+|+| ++++++++.+ |+++..||+++..+...+. .|...|..+.|+|+-++ ||+++.|
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDd  236 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDD  236 (370)
T ss_pred             cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCC
Confidence            34456778888 4567777764 7899999999988777775 67788999999999764 5555555

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.27  E-value=0.0028  Score=49.62  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             CeEEEEECCCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLSRGAFVTGDN-EG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~-Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ++....|+| +++.|+..+. ++  .|.+||+.+++.. .+..........+|+|||+.||...
T Consensus       219 ~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        219 PLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             cccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEE
Confidence            566889999 9987766543 33  6888999877642 2333333445789999999888654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.27  E-value=0.0035  Score=48.65  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             eEEEEECCCCCCEE-EEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAF-VTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~-~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...++|+| +++.| ++.+.+|  .|.+||+.+++. ..+..+.......+|+|||+.|+..+.
T Consensus       250 ~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd  311 (433)
T PRK04922        250 NGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD  311 (433)
T ss_pred             ccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC
Confidence            34679999 88765 4555565  699999988764 344444445567899999999987764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.26  E-value=0.0013  Score=36.14  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR   50 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~   50 (114)
                      ..+|..++|+| ...+|+.+..||.|.+|++ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45699999999 8999999999999999998 4443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.19  E-value=0.0015  Score=50.78  Aligned_cols=66  Identities=14%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC------eeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR------RRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~------~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|...|++|.|+. +++.|++|+.|..+.+|.++..      +.+.... .|...|.+++|+-..+.+.+|..+
T Consensus        54 ~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   54 EHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            4578899999999 8899999999999999998652      2222222 356789999998766667666544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.18  E-value=0.0033  Score=53.09  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++..-+-+.+ +.-++++|+.-+.|.+|+....+....+.+|.+.|.++.|+-||+++|+.|.|
T Consensus       134 ~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdD  196 (967)
T KOG0974|consen  134 YSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDD  196 (967)
T ss_pred             EeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecC
Confidence            3344455566 55678999999999999987544444678999999999999999999999988

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.17  E-value=0.0032  Score=48.87  Aligned_cols=59  Identities=15%  Similarity=0.203  Sum_probs=40.9

Q ss_pred             eEEEEECCCCCCEEE-EEeCCCcEEEE--eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFV-TGDNEGYVAAW--DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~-t~s~Dg~I~iw--D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +...+|+| +++.|+ +.+.+|...+|  |+..+. ...+..+........|+|||+.|+..+.
T Consensus       242 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~  303 (427)
T PRK02889        242 NSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD  303 (427)
T ss_pred             ccceEECC-CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec
Confidence            45789999 987765 56778876666  454443 4445444455667899999999887653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.0062  Score=47.42  Aligned_cols=70  Identities=13%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             CCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677            9 KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus         9 ~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +.+.+|.+-|.+++|+- .+..+++|+.+++|...|+++.+.+..+.  ...+.|..+..+|....|++.+.+
T Consensus        99 ~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~  170 (609)
T KOG4227|consen   99 VMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA  170 (609)
T ss_pred             eccCccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence            35567888999999998 77889999999999999999988777664  234589999999998899988877

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.13  E-value=0.0013  Score=52.98  Aligned_cols=71  Identities=17%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Ccccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TYQEA   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~~~~   84 (114)
                      -|..+|+++.++|+-...|++++ |-++++|.-. ....+..+..+...|++++|||.- .+||++..|    .|+.-
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            35788999999995445666666 8999999887 666777777788889999999964 577777655    57733

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.08  E-value=0.0072  Score=46.57  Aligned_cols=59  Identities=15%  Similarity=0.184  Sum_probs=42.0

Q ss_pred             eEEEEECCCCCCEEE-EEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFV-TGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~-t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +...+|+| +++.|+ +...+|  .|.+||+.+++. ..+...........|+|||+.|+..+.
T Consensus       245 ~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        245 NGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             cCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEEC
Confidence            34689999 987665 555555  688889988764 334444455667899999998887653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.00  E-value=0.0013  Score=54.99  Aligned_cols=63  Identities=13%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      |..++..+.+||++....++++-||.+.+||+-.+..++.+......+...+||+||..++..
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence            466788999999766777899999999999999988777665335567789999999988754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.98  E-value=0.0039  Score=52.21  Aligned_cols=61  Identities=15%  Similarity=0.294  Sum_probs=45.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .....+++-.. + ..||.|+.+|.|++||.- +...+ .+++...||..|..+.||+++.+.+.
T Consensus       577 ~~~Fs~~aTt~-~-G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  577 KNNFSCFATTE-D-GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCceEEEecC-C-ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            33455666665 4 589999999999999954 33333 45677899999999999998765443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.98  E-value=0.011  Score=46.12  Aligned_cols=61  Identities=13%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+....|+| +++.|+..+.+   ..|.+||+.+++... +......+....|+|||+.|+....+
T Consensus       328 ~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        328 NSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECC
Confidence            355788999 99877665443   368999999886543 33334456789999999988866543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.96  E-value=0.0074  Score=44.78  Aligned_cols=59  Identities=12%  Similarity=0.297  Sum_probs=41.2

Q ss_pred             EEEEECCCCCCEEEEEe-CCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeC
Q 033677           19 NDVVFSPLSRGAFVTGD-NEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..+.|+| ++++++++. .++.|.+|+++......++.   ........+.|+|||++|+++..
T Consensus       231 ~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        231 ADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             eeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            3688999 998887775 47899999986533211121   12234568999999999988765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.94  E-value=0.0038  Score=47.33  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|.+++|+|.+..+++.|+-...+-+|.-..+..+..+.+|.+-|+-+.|.+||+.|.+|+.-
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence            55688999999555689999988888898888888888888999999999999999999988763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=96.93  E-value=0.0055  Score=46.69  Aligned_cols=62  Identities=18%  Similarity=0.408  Sum_probs=48.6

Q ss_pred             cCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .++.+++|+| ++ ..|.+..-|-.|.+|.+.+.+... ++-....+..++|+|||+++|+.+..
T Consensus        92 agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   92 AGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             CcceeeeECC-CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc
Confidence            4688999999 98 556667779999999999877543 33333456889999999999998763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.92  E-value=0.011  Score=43.74  Aligned_cols=61  Identities=8%  Similarity=0.102  Sum_probs=42.3

Q ss_pred             CeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEE-----ec-CCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFE-----LP-RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~-----~~-~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ....++++| +++.+ ++...++.|.+||+++...+..     .. ........++|+|||++++++..
T Consensus       127 ~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        127 GCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             cccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence            356788999 88766 4555679999999986332211     11 12344678999999999988765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.87  E-value=0.0067  Score=46.61  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeC-CCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA-QSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~-~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+.-+.|+| ++..|+++.-|+..++|.. ++....+.. ...+.|...+|+|+|+.|..++.
T Consensus       238 lgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  238 LGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             CCceeeEEEcC-CCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc
Confidence            34567899999 9999999999999999954 344444333 34458999999999986655443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.82  E-value=0.016  Score=45.42  Aligned_cols=58  Identities=17%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             EEEEECCCCCCEEE-EEeCCCc--EEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           19 NDVVFSPLSRGAFV-TGDNEGY--VAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        19 ~~v~f~p~~~~~~~-t~s~Dg~--I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+|+| +++.|+ +.+.+|.  |.+||+.+++. ..+..+.......+|+|||+.|+..+.
T Consensus       265 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~  325 (448)
T PRK04792        265 GAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSE  325 (448)
T ss_pred             CCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC
Confidence            4678999 887665 4566674  77789887753 344444455678899999998887664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.81  E-value=0.018  Score=45.80  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=53.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..-|.++..+| ++..++.+.....|-+.|+++++....-+...+.|+...|+|+++++|.+--+
T Consensus       401 lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~  464 (668)
T COG4946         401 LGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE  464 (668)
T ss_pred             ccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence            55688999999 99989898888899999999997544334556789999999999999988765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.78  E-value=0.02  Score=43.53  Aligned_cols=60  Identities=17%  Similarity=0.206  Sum_probs=41.5

Q ss_pred             CeEEEEECCCCCCEEE-EEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFV-TGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~-t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+..++|+| +++.|+ +.+.++  .|.+||+.++.. ..+..+........|+|||+.|+..+.
T Consensus       235 ~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~  297 (417)
T TIGR02800       235 MNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSD  297 (417)
T ss_pred             CccceEECC-CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEEC
Confidence            355689999 887654 555554  588899987653 334444444557799999998887664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.73  E-value=0.0015  Score=58.40  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=44.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |...++.+++-| ..++|++||.+|.|++||++.++..+.++.         +. ..++|.+|+..
T Consensus      2335 H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSE 2389 (2439)
T ss_pred             cCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcc
Confidence            445589999999 889999999999999999999888777765         22 34567777665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.68  E-value=0.0066  Score=46.70  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |++.+++|+++| |++.|+++..|..|++-.+-.--.+..|. +|..-|..++.-++ +.|++|++|
T Consensus       150 hvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD  214 (390)
T KOG3914|consen  150 HVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGD  214 (390)
T ss_pred             hhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCC
Confidence            577899999999 99999999999999996665555555555 68889999998764 568889888

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=96.54  E-value=0.0017  Score=48.01  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA   45 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~   45 (114)
                      +|...|++++|+| +.++++.++.|+.|.+|++
T Consensus       291 yHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  291 YHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            5678899999999 8899999999999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.50  E-value=0.026  Score=43.99  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             EEEEECCCCCCEEEEEe-CCCcEEEE--eCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGD-NEGYVAAW--DAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s-~Dg~I~iw--D~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+|+| +++.|+..+ .+|...+|  ++.. +.....+......+....|||||+.||..+.+
T Consensus       284 ~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~  347 (428)
T PRK01029        284 GNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI  347 (428)
T ss_pred             CCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC
Confidence            4679999 998766554 46655555  4432 22234444444566788999999999876643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.40  E-value=0.011  Score=43.88  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=40.4

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----EecCCCCCeEEEEECCCC
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-----ELPRFSNSVASLSYNHGG   70 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-----~~~~~~~~v~~v~fspdg   70 (114)
                      .+.+|+. ....|+++..||++.+||++......     +-+.|.+.+..+.|++-|
T Consensus       207 F~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  207 FYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             eeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            3678888 78899999999999999999753222     223578899999999865

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.0066  Score=49.18  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=55.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|..++.+| .+..|+.|+.|+.+..+|+.-. +..+.+..|...+++|+|.+.=-+||+|+.|
T Consensus       607 ~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  607 SKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             CeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            34688999999 9989999999999999999754 4556677889999999999988899999987

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.38  E-value=0.085  Score=39.79  Aligned_cols=62  Identities=13%  Similarity=0.223  Sum_probs=42.9

Q ss_pred             CeEEEEECCCCCCEEEEE-eCCCcEEEEeCCC--Ce--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTG-DNEGYVAAWDAQS--RR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~-s~Dg~I~iwD~~~--~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ....|.++| +++.|+++ ..+..|.+|+++.  ++  .+..+.........++++|+|++|+++..+
T Consensus       246 ~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  246 APAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             SEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             CceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            467899999 99766554 4567899999843  32  223333334558999999999999998865

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=96.31  E-value=0.021  Score=43.44  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC--CCCEEEEEeCC----Cccc-cc-c---c---CCCCcEE
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH--GGQLLAVASSC----TYQE-AT-V---I---EEPPQIF   94 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d----~~~~-~~-~---~---~~~~~i~   94 (114)
                      ..++++...|.|++||..+++.+..+++++..++.+.|..  .+..+.++++|    .|+. .. +   +   +++...|
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688999999999999999999999999999999999976  45778888888    5661 11 1   1   3333455


Q ss_pred             EEEcCcccccceeee
Q 033677           95 IIRIDDIQQQSACVG  109 (114)
Q Consensus        95 i~~~~~~~~~~~~~~  109 (114)
                      +--.-.++.+..|.|
T Consensus       121 ~~ld~nck~~ii~~G  135 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACG  135 (376)
T ss_pred             eEeeccCcCCeEEec
Confidence            544444455555544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.28  E-value=0.024  Score=30.95  Aligned_cols=32  Identities=16%  Similarity=0.392  Sum_probs=26.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcC
Q 033677           57 FSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRID   99 (114)
Q Consensus        57 ~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~   99 (114)
                      ....|..++|+|...+||.++.+           +.|.|++++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~-----------g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTED-----------GEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECC-----------CeEEEEECC
Confidence            35679999999999999999987           667777773

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.24  E-value=0.14  Score=39.91  Aligned_cols=60  Identities=5%  Similarity=-0.001  Sum_probs=41.5

Q ss_pred             CeEEEEECCCCCCE-EEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGA-FVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~-~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ++..-.|+| +++. ++..+.   +..|.++|+.+++... +....+......|||||+.++....
T Consensus       189 ~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        189 LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEc
Confidence            466789999 8863 543333   3578899998876443 3334555667889999998876654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=96.21  E-value=0.021  Score=43.58  Aligned_cols=61  Identities=10%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             CeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .|..|.|.- +.. .|...+.|+.|.+|++...+--.++.....++.+++|||||+.+...++
T Consensus        50 ki~yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse  111 (447)
T KOG4497|consen   50 KIVYIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE  111 (447)
T ss_pred             Hhhheeeec-cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec
Confidence            355677877 664 4566778999999999987766677777888999999999976555444

>smart00320 WD40 WD40 repeats

Probab=96.20  E-value=0.024  Score=26.56  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=25.1

Q ss_pred             eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           49 RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        49 ~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +....+..+...|.++.|+|++.++++++.|
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d   33 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDD   33 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCC
Confidence            3445566778889999999999999988877

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.021  Score=44.36  Aligned_cols=61  Identities=15%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             ecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...|.+++|+| .+ .++..++-+..|++.|+++..++..+..+ .++.+++|.-|...+..|+
T Consensus       193 g~~IrdlafSp-~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  193 GSFIRDLAFSP-FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             chhhhhhccCc-cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEe
Confidence            44578999999 55 48899999999999999999888777655 8899999998876555554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.16  E-value=0.035  Score=47.48  Aligned_cols=63  Identities=10%  Similarity=0.118  Sum_probs=49.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEE----eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAW----DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iw----D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|.++.|-+ +.+.++.+..+|.|.+.    |..+.. +...-..+..|.+++||||+++||..+++
T Consensus        75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~  141 (928)
T PF04762_consen   75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGE  141 (928)
T ss_pred             CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCC
Confidence            34688999999 88889999999999998    554433 22222446789999999999999998866

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.13  E-value=0.11  Score=40.51  Aligned_cols=72  Identities=11%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             eEEEEECCCCCCEE-EEEeCC--CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEE
Q 033677           18 VNDVVFSPLSRGAF-VTGDNE--GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIF   94 (114)
Q Consensus        18 V~~v~f~p~~~~~~-~t~s~D--g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~   94 (114)
                      .....|+| ++..+ ++.+.+  ..|.++|+.++. ...+...........|+|||+.|+..+..        .+...||
T Consensus       235 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr--------~g~~~Iy  304 (419)
T PRK04043        235 LVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDR--------LGYPNIF  304 (419)
T ss_pred             EEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECC--------CCCceEE
Confidence            44577999 88654 444444  467778987775 33444333333456899999988887743        1234566


Q ss_pred             EEEcC
Q 033677           95 IIRID   99 (114)
Q Consensus        95 i~~~~   99 (114)
                      +.++.
T Consensus       305 ~~dl~  309 (419)
T PRK04043        305 MKKLN  309 (419)
T ss_pred             EEECC
Confidence            66554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=96.11  E-value=0.04  Score=44.65  Aligned_cols=61  Identities=13%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCC--CEEEEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGG--QLLAVA   76 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg--~~la~~   76 (114)
                      .-.|++|.|.. ++-.+++|..+|.+.+||+++.+.+.... ...-+|..+.|.+.+  ..+++.
T Consensus       228 ~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  228 APSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             cCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence            33599999998 88889999999999999999987665332 335689999997763  344433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.038  Score=42.66  Aligned_cols=62  Identities=16%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             CeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .++++.|-| .  ...|+++..-+.+++||.+.+ +.+.++.....+++++..-|+|+.+.+|..-
T Consensus       204 W~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~  268 (412)
T KOG3881|consen  204 WITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK  268 (412)
T ss_pred             eeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc
Confidence            456899998 6  689999999999999999965 5566676678899999999999988877653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.89  E-value=0.14  Score=39.29  Aligned_cols=88  Identities=13%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             ECCCCCCEEEEEeC----------CCcEEEEeCCCCeeeEEecCCC-------CCeEEEEECCCCCEEEEEeCC-C----
Q 033677           23 FSPLSRGAFVTGDN----------EGYVAAWDAQSRRRLFELPRFS-------NSVASLSYNHGGQLLAVASSC-T----   80 (114)
Q Consensus        23 f~p~~~~~~~t~s~----------Dg~I~iwD~~~~~~~~~~~~~~-------~~v~~v~fspdg~~la~~s~d-~----   80 (114)
                      ++| ++..|+.+..          +..|.+||..+.+.+..+.-..       .....++++|||++|.++..+ +    
T Consensus        53 ~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            899 8876655554          7899999999999887776322       223478999999988876644 1    


Q ss_pred             -ccc-----ccccCCCCcEEEEEcCcccccceeeecC
Q 033677           81 -YQE-----ATVIEEPPQIFIIRIDDIQQQSACVGSS  111 (114)
Q Consensus        81 -~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~~  111 (114)
                       .+.     -.|...+....+....+.....-|.+++
T Consensus       132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGS  168 (352)
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCc
Confidence             111     1223334444555555555555566554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.87  E-value=0.038  Score=43.31  Aligned_cols=71  Identities=20%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             EEEECCCCCCE-EEEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEE
Q 033677           20 DVVFSPLSRGA-FVTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFII   96 (114)
Q Consensus        20 ~v~f~p~~~~~-~~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~   96 (114)
                      .-+|+| +++. +++...||  .|.+.|+..+. +..+......-+.=.|+|||+.++..+..        .+.++||++
T Consensus       242 ~P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr--------~G~p~I~~~  311 (425)
T COG0823         242 APAFSP-DGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDR--------GGRPQIYLY  311 (425)
T ss_pred             CccCCC-CCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCC--------CCCcceEEE
Confidence            457899 8854 56666677  45566887766 33344333333466899999999988755        444567776


Q ss_pred             EcCc
Q 033677           97 RIDD  100 (114)
Q Consensus        97 ~~~~  100 (114)
                      +.+.
T Consensus       312 ~~~g  315 (425)
T COG0823         312 DLEG  315 (425)
T ss_pred             CCCC
Confidence            6644

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.87  E-value=0.027  Score=48.55  Aligned_cols=61  Identities=13%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             eEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeee--EEecCC---CCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRL--FELPRF---SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~--~~~~~~---~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+.+.+ .+ ..|++|+.||.|++||++.....  .....+   .+.++++..+++..++|+|+..
T Consensus      1259 Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1259 IVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred             ceeEEeec-CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence            99999998 66 46999999999999999974211  122222   3359999999999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=95.73  E-value=0.016  Score=44.31  Aligned_cols=66  Identities=23%  Similarity=0.398  Sum_probs=53.9

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..++.+++|.| .+.++++|+.|-.+.+||+--++ ....+++|...|..+.+-+--+.+.++..|
T Consensus       195 ~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed  261 (404)
T KOG1409|consen  195 GHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED  261 (404)
T ss_pred             CcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence            4578899999999 88999999999999999997543 345677888888888887766777777766

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=95.71  E-value=0.012  Score=45.05  Aligned_cols=64  Identities=13%  Similarity=0.167  Sum_probs=42.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEEC-----CCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYN-----HGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fs-----pdg~~la~~s~d   79 (114)
                      .|.+.|+++..-..+++.|++.+.+|+|++||.+.-++   +.++.+|   |+..++.     +....+++++.|
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdD  367 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDD  367 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEEccCe
Confidence            45556777766553557889999999999999998777   6666666   3333333     333455555555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.71  E-value=0.059  Score=43.66  Aligned_cols=62  Identities=15%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+.|-.+.++++++|++||...+|+-.++..+..+.+....|+++.=.|..-.+|++..|
T Consensus       626 IKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiD  687 (758)
T KOG1310|consen  626 IKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGID  687 (758)
T ss_pred             cccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCc
Confidence            45556655467999999999999999999999888888888889999999988889998888

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.65  E-value=0.28  Score=37.64  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=43.7

Q ss_pred             EEEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEe
Q 033677           19 NDVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVAS   77 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s   77 (114)
                      .-++++| +++.++...          ..+.|-++|..+++.+..+. ....+..++|+|||+ +|.+..
T Consensus       251 q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       251 QQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             eeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeC
Confidence            3499999 887666642          12479999999999888775 356788999999999 666555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.64  E-value=0.0082  Score=50.70  Aligned_cols=63  Identities=14%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             ecCe--EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPV--NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V--~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+||  ++++||| ..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|||+|..|.++..
T Consensus        57 t~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~  121 (1416)
T KOG3617|consen   57 TYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN  121 (1416)
T ss_pred             ccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC
Confidence            4454  5799999 7777888988999999998877644444578999999999999999987643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.03  Score=45.61  Aligned_cols=51  Identities=14%  Similarity=0.301  Sum_probs=42.2

Q ss_pred             CeE-EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECC
Q 033677           17 PVN-DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNH   68 (114)
Q Consensus        17 ~V~-~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fsp   68 (114)
                      +++ +++|.| |+++|+.|-.||+|++.|+.++..+..+. .....|+.+-|+|
T Consensus        63 ~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   63 NVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccceeeeecC-CCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            344 999999 99999999999999999999988776643 3356788888874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.53  E-value=0.18  Score=38.16  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             EECCCCCC-EEEE-EeCCCcEEEEeCCCCee--eEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           22 VFSPLSRG-AFVT-GDNEGYVAAWDAQSRRR--LFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        22 ~f~p~~~~-~~~t-~s~Dg~I~iwD~~~~~~--~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++.|..+. +|+. |-.-|.|++-|+...+.  ...+.+|...|.+++++.+|.++|++|.-
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk  202 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTK  202 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence            34452233 3433 33458999999876543  35678999999999999999999999976

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.50  E-value=0.041  Score=45.31  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=46.8

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee---EEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL---FEL---PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~---~~~---~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++.++ +..+++.|+..|.|.++-+..+..-   ..-   +.|...|++++|++|+..+.+|..-
T Consensus        78 ~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen   78 ITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             eEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence            466778898 7788899999999999988764211   111   2357889999999999999887644

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.47  E-value=0.052  Score=46.34  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC------Ccccccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC------TYQEATV   86 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d------~~~~~~~   86 (114)
                      ....++++|+- ..+.|+.|+..|.|+++++.+|.-......|..+|+.+.=+.||..+.+.++-      .|..+..
T Consensus      1101 ~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1101 TALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred             ccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence            35678999999 88999999999999999999998888888999999999999999877665443      5876654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.41  E-value=0.09  Score=39.62  Aligned_cols=58  Identities=29%  Similarity=0.383  Sum_probs=46.6

Q ss_pred             EEECCCCCCEEEEE-----eCCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           21 VVFSPLSRGAFVTG-----DNEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        21 v~f~p~~~~~~~t~-----s~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -.|+| ++++|++.     ...|.|-+||.. +-+.+.++..+.--...+.+.|||+.|+++-.-
T Consensus        56 g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG  119 (305)
T PF07433_consen   56 GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG  119 (305)
T ss_pred             EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence            47899 99888774     335899999999 567777888777778899999999888877654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.32  E-value=0.01  Score=45.39  Aligned_cols=60  Identities=15%  Similarity=0.288  Sum_probs=43.2

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-ee---EEec------------CCCCCeEEEEECCCCCEEEEE
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RL---FELP------------RFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~---~~~~------------~~~~~v~~v~fspdg~~la~~   76 (114)
                      .|++..|||..-++|+-.+..|+|++.|++... |.   +.+.            ..-..|..+.|+++|+||++=
T Consensus       215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR  290 (433)
T KOG1354|consen  215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR  290 (433)
T ss_pred             HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe
Confidence            367889999434889999999999999998431 11   1111            112568899999999999853

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=95.26  E-value=0.091  Score=42.57  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             eEEEEECCCCCCEEEEEeCC-----------CcEEEEeCCCCeeeEEecC--CCCCe-EEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNE-----------GYVAAWDAQSRRRLFELPR--FSNSV-ASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~D-----------g~I~iwD~~~~~~~~~~~~--~~~~v-~~v~fspdg~~la~~s~d   79 (114)
                      |.-+.|+| ..++|+|-+..           ..+.+||+++|...+.|..  ...++ .-..||.|++++|--..+
T Consensus       252 Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~  326 (698)
T KOG2314|consen  252 VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN  326 (698)
T ss_pred             ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence            56889999 88888886542           3789999999988887765  23333 257999999999977665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.19  E-value=0.56  Score=35.91  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             CeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCC-eeeEEecC---------CCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSR-RRLFELPR---------FSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~-~~~~~~~~---------~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...-|.||| ++.......+ +++|.+|..+.. ..+..++.         -.....+|..+|||++|.++-.
T Consensus       192 GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         192 GPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             CcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence            345689999 8887666555 899999998873 22333331         1345678999999998876543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=95.12  E-value=0.062  Score=43.50  Aligned_cols=62  Identities=16%  Similarity=0.188  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCCCEEEEE---eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTG---DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~---s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -.|.|.|+| .|+.++.+   |..|.+.++|..-..+...-.......+.+.|.|.|+|+.++++-
T Consensus       494 ~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  494 FANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             ccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence            367899999 88876654   447899999987533222111222346789999999999887753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=95.00  E-value=0.023  Score=45.09  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=52.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      .|...|+.|.|+. .+..+++|+.|..|.+||-..+.....+. +|...|--.+|-|.  .+.++..+.|
T Consensus       140 ~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             CCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence            4567899999999 99999999999999999998887766665 67777777778773  3456666666

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.97  E-value=0.39  Score=34.10  Aligned_cols=58  Identities=14%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE-CCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY-NHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f-spdg~~la~~s   77 (114)
                      .-.+++.. +++++++....+.|.++|.+ ++.+..+......+++++| .|+.+.|.+.+
T Consensus       186 pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  186 PDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            56799999 89988888889999999988 7777767644468999999 46766555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=94.95  E-value=0.19  Score=40.52  Aligned_cols=61  Identities=23%  Similarity=0.373  Sum_probs=47.2

Q ss_pred             ecCeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+||.++.|+| ++..|++  |-.-..+.++|++.. .+..+  ..++=+++-|||.|++++.++-+
T Consensus       270 ~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFG  332 (566)
T KOG2315|consen  270 EGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFG  332 (566)
T ss_pred             CCCceEEEECC-CCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecC
Confidence            57899999999 8877655  555679999999843 44444  35666789999999999887755

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=0.064  Score=46.22  Aligned_cols=51  Identities=22%  Similarity=0.405  Sum_probs=42.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEE
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASL   64 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v   64 (114)
                      ...+||++++|+. ++.+++.|-.+|.|.+||...++.++.+..+..|.+++
T Consensus       128 ~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  128 RVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             ccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            3368899999999 99999999999999999999988888877665555444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.90  E-value=0.29  Score=42.53  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=45.1

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-------------CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-------------RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-------------~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+|++.| +++++++-+.++.|++||..++.......             ........|+++++|+++++-+.+
T Consensus       806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence            45899999 88899999999999999998876442221             112356789999999977655444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=94.90  E-value=0.03  Score=43.21  Aligned_cols=37  Identities=16%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP   55 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~   55 (114)
                      =|..++..+  +..|+++|.|+++++||+++++++.++.
T Consensus       196 FVS~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  196 FVSTISLTD--NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             heeeeeecc--CceeeecCCCCcEEEEecccCCcccccc
Confidence            356777776  3568999999999999999999887664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.82  E-value=0.33  Score=37.14  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=48.0

Q ss_pred             CeEEEEECCCCCCEEEEE-eCCC----cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCC
Q 033677           17 PVNDVVFSPLSRGAFVTG-DNEG----YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPP   91 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~-s~Dg----~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~   91 (114)
                      .+...+++| ++++++-+ +..|    .|+++|+.+++.+........ ...+.|.+||+.|.....+.-.++.....+.
T Consensus       125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            345788999 99876643 3344    699999999976543211111 1239999999988776655322211223344


Q ss_pred             cEEEEEc
Q 033677           92 QIFIIRI   98 (114)
Q Consensus        92 ~i~i~~~   98 (114)
                      .||.|.+
T Consensus       203 ~v~~~~~  209 (414)
T PF02897_consen  203 QVYRHKL  209 (414)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            5555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.72  E-value=0.26  Score=35.04  Aligned_cols=62  Identities=23%  Similarity=0.246  Sum_probs=42.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC--------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE--------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D--------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ....|++++.| +++++++....        |.|..++.. ++..... ..-...+.|+|+||++.|.++.+.
T Consensus        85 ~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   85 FNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             TEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETT
T ss_pred             cCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccc
Confidence            45689999999 99988886654        557777777 4433333 234557899999999977765543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.67  E-value=0.027  Score=45.74  Aligned_cols=56  Identities=9%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCCCEEEEEeCC--Ccc
Q 033677           27 SRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQ   82 (114)
Q Consensus        27 ~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~   82 (114)
                      +.+-|++++.|.+|++|.++..       .|..+++.|..+|..+.|-.+-+++|++.+-  .|+
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD  810 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD  810 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence            3467999999999999998752       3666778999999999999988888876554  677

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.57  E-value=0.12  Score=40.76  Aligned_cols=49  Identities=10%  Similarity=0.247  Sum_probs=32.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |.+|...+.+ .|.+||..+++.+..+.-.  +|..|.||++|+++|..+.+
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence            3456555544 7999999999988887633  38999999999999999876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=94.40  E-value=0.026  Score=44.81  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             eEEEE-ECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVV-FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~-f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |.++- |.| ..+++++|++=|.|-|||-.+++.+..+.+....|+++.=.|---+||+++-|
T Consensus       396 VKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  396 VKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             cceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence            44444 578 77899999988999999999999888887777788899878876788887766

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.36  E-value=0.12  Score=41.73  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR   48 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~   48 (114)
                      +....++.++||| ++..|++|+..|.+.+||+.-.
T Consensus       297 ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  297 KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence            3456678899999 9999999999999999998643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=0.31  Score=42.37  Aligned_cols=63  Identities=16%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCCC--eEEEEECCCCC-EEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSNS--VASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~~--v~~v~fspdg~-~la~~s~d   79 (114)
                      .|++++-+...+++|++|-.||.|++||.+...   .+..++.|...  |..+.+.+.|. .|++|+.+
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence            466666554235899999999999999998743   34455666655  99999998774 47788877

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.20  E-value=0.22  Score=38.24  Aligned_cols=53  Identities=25%  Similarity=0.322  Sum_probs=38.1

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCc
Q 033677           29 GAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY   81 (114)
Q Consensus        29 ~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~   81 (114)
                      +++ ++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++.+++.|.+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~   59 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT   59 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe
Confidence            455 56667899999999999988888755444456789999999988887743

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.04  E-value=0.04  Score=41.92  Aligned_cols=60  Identities=18%  Similarity=0.368  Sum_probs=42.6

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-e-----eEEe----------cCCCCCeEEEEECCCCCEEEEE
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-R-----LFEL----------PRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~-----~~~~----------~~~~~~v~~v~fspdg~~la~~   76 (114)
                      .|++..|+|..-+.|+-.+..|.|++-|++... |     +...          ...-..|..+.|+|+|+++++-
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR  298 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR  298 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence            467788999444788888899999999998421 1     1111          1123578899999999998753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=0.22  Score=41.83  Aligned_cols=51  Identities=8%  Similarity=0.147  Sum_probs=39.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-----CCEEEEEeC
Q 033677           27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-----GQLLAVASS   78 (114)
Q Consensus        27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-----g~~la~~s~   78 (114)
                      .+..+++|+.||.|.+-.+-+.....++ ....++.+|+++||     .+.+++|+.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~  137 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGM  137 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCc
Confidence            4789999999999999888777655544 45688999999998     455666553

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=94.01  E-value=0.21  Score=37.66  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=43.9

Q ss_pred             CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCC
Q 033677           11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHG   69 (114)
Q Consensus        11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspd   69 (114)
                      +.-|...|.+|.-+|.....|+||+-|-.|++||.++ ++.+..- ...+.|.-++++|.
T Consensus       206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPE  264 (339)
T ss_pred             ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecch
Confidence            3456677888888874567999999999999999995 4444322 34577899999884

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.98  E-value=0.11  Score=41.91  Aligned_cols=50  Identities=20%  Similarity=0.400  Sum_probs=39.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...|++||.+|.|++||.-.......+++...+|+-|..+.||+++...+
T Consensus       441 sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  441 SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            35899999999999999844343345678899999999999999776433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.92  E-value=0.42  Score=41.80  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|.++.|.. +.+.++.+..+|.|.+-|..+.. +...-.....|.+++||||++++|..+..
T Consensus        70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~  130 (1265)
T KOG1920|consen   70 EIVSVQFLA-DTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGR  130 (1265)
T ss_pred             ceEEEEEec-ccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCC
Confidence            588999998 88888899999999999887654 22233456789999999999999988774

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.67  E-value=0.2  Score=42.03  Aligned_cols=64  Identities=20%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe--cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL--PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~--~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|..+.|+. .++.|-|...+|.|.+|-+-.+.=....  ......|.+++|+.||..+++...|
T Consensus        71 ~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD  136 (1189)
T KOG2041|consen   71 NASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED  136 (1189)
T ss_pred             cceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence            66789999998 7888989999999999998776522222  1335678899999999999888777

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=93.63  E-value=1.2  Score=28.72  Aligned_cols=58  Identities=16%  Similarity=0.209  Sum_probs=39.3

Q ss_pred             eEEEEECCC--CC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPL--SR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~--~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |+++++...  ++ +.|++|+.|..|++|+-.  +.+.++. ....|+.++-... ..||.+...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~N   62 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALAN   62 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecC
Confidence            556665432  33 689999999999999754  4555554 4566777776655 467777665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.62  E-value=0.54  Score=34.40  Aligned_cols=61  Identities=13%  Similarity=0.266  Sum_probs=35.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCC---------CCeEEEEECCCCCEEEEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS---------NSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~---------~~v~~v~fspdg~~la~~   76 (114)
                      ...+.+|+++|.++++++....+..|..+| .+++.+..+.-..         .+.-.|+|.++|+++.++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            445789999995567777777788999999 4565554443221         356799999999866544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.40  E-value=0.37  Score=36.45  Aligned_cols=56  Identities=25%  Similarity=0.422  Sum_probs=43.4

Q ss_pred             EECCCCCCEEEEEeCC-----CcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           22 VFSPLSRGAFVTGDNE-----GYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        22 ~f~p~~~~~~~t~s~D-----g~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .|+| ++.+|+..=.|     |.|-+||.+.+ +.+-++..+.--...+.|.+||+.|+++..
T Consensus       120 vfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            5788 88877664333     79999999854 445566777777889999999999998776

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.30  E-value=0.12  Score=43.33  Aligned_cols=66  Identities=23%  Similarity=0.461  Sum_probs=49.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      |...|+++-|+|+....+++++.|-.+..||+++. ..+..+..-....+.|+|+- ++..+|+.-+.
T Consensus       113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence            45679999999955588999999999999999985 34444544455667888875 66777765543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.08  E-value=0.72  Score=24.75  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=24.5

Q ss_pred             CeEEEEECCCCC--CEEEEEeCCCcEEEEeCCC
Q 033677           17 PVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQS   47 (114)
Q Consensus        17 ~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~   47 (114)
                      +|-++.|+|...  .+|+-+-..|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999998333  4777777789999999995

It contains a characteristic DLL sequence motif.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=92.98  E-value=1.1  Score=36.12  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             eEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEG-YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg-~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      |....+.- +++-++.|..|| .+.+||.++++ ++.+...-+.|-+++.+|||+.++++-.
T Consensus       362 VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNd  421 (668)
T COG4946         362 VRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVAND  421 (668)
T ss_pred             eEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence            55566666 667889999999 89999999876 5556677788999999999998887653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=92.64  E-value=0.085  Score=39.16  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=29.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS   47 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~   47 (114)
                      |-.+++.|-|||+++..|++++.||.+-.||..+
T Consensus       222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4567899999997778999999999999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.42  E-value=0.41  Score=41.13  Aligned_cols=59  Identities=10%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             eEEEEECCCCCCEEEEEeC---C---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFVTGDN---E---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~---D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      -..|+|-. |+++|++.+.   +   ..|++|+.+ |..........+.-.+++|.|.|.++|+.-.
T Consensus       212 ~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  212 RVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             ceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence            45789999 9999998775   3   478999865 6544444444455568999999999998765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.39  E-value=1.3  Score=33.45  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=41.4

Q ss_pred             eEEEEECCCCCCEEEEEeC----CCcEEEEeCCCC--e--eeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDN----EGYVAAWDAQSR--R--RLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~----Dg~I~iwD~~~~--~--~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...|+++| ++++|++...    +|.|..|++...  +  .+............++++|++++|+++.
T Consensus        39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van  105 (345)
T PF10282_consen   39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN  105 (345)
T ss_dssp             ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE
Confidence            45688999 8888888766    568888887764  2  2233333455667899999999888765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=92.21  E-value=2.3  Score=37.17  Aligned_cols=61  Identities=13%  Similarity=0.131  Sum_probs=41.6

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC---------------CCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR---------------FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~---------------~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+|+|+|.++.++++.+.++.|.+||..++... .+.+               .....+.|+|+|+|..|.++..+
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~  760 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE  760 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence            4589999933456777777899999999876532 2211               11345679999999866666554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.91  E-value=1.7  Score=33.37  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCC--CeeeE--EecCCCCCeEEEEECCCCCEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQS--RRRLF--ELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~--~~~~~--~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ....++-|+|+| +++.|.++..+   |.|-.|.++.  ++.-.  .......+...++++++|++++++.
T Consensus        38 ~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An  107 (346)
T COG2706          38 ELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN  107 (346)
T ss_pred             ccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE
Confidence            355577899999 88777776654   6677665553  54222  2223345558999999999888764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.88  E-value=1.4  Score=31.57  Aligned_cols=51  Identities=14%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEe-------c-------CCCCCeEEEEECCCCCEEEEEe
Q 033677           27 SRGAFVTGDNEGYVAAWDAQSRRRLFEL-------P-------RFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-------~-------~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .++.+++-..+|.+++||+.+++.+..-       .       .....|+.+.++.+|..+++-+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence            4578999999999999999998765432       1       1345788999999998776543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.85  E-value=0.61  Score=23.60  Aligned_cols=24  Identities=13%  Similarity=0.164  Sum_probs=16.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           56 RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        56 ~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .....-...+|||||+.|+..+..
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred             cCCccccCEEEecCCCEEEEEecC
Confidence            344556788999999999887744

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR02781 VirB9 P-type conjugative transfer protein VirB9

Probab=91.80  E-value=0.87  Score=33.11  Aligned_cols=63  Identities=6%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--CcccccccCCCCcEEEEEcCc
Q 033677           34 GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVIEEPPQIFIIRIDD  100 (114)
Q Consensus        34 ~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~~~~~~i~i~~~~~  100 (114)
                      +..|..|+........ +..+....+.++.|.|.|+.++...+.+|  .|+....   .+.|||++...
T Consensus        24 ~~~D~Ri~~~~Y~p~~-v~~V~~~~g~~T~I~f~~gE~I~~v~~GDt~~W~v~~~---~n~i~IKP~~~   88 (243)
T TIGR02781        24 SSYDSRIRTVVYNPDD-VVRVVTSYGYSTTIEFADDETIKTVAVGDSKAWEVTPN---GNKLFIKPTEK   88 (243)
T ss_pred             CCCCCceEEEEcCCCC-EEEEEEECCEEEEEEeCCCCEEEEecccCCcceEEEcC---CCEEEEEECCC
Confidence            3458888888776555 44566677889999999988776666666  7986643   47799998755

The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.74  E-value=4.2  Score=30.15  Aligned_cols=62  Identities=16%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCCCcc
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSCTYQ   82 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d~~~   82 (114)
                      .+++.. .++++++.-..|+|...|..+++.+.+++-....|++++|-- +=.+|.+.+.-..+
T Consensus       216 Gm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~  278 (310)
T KOG4499|consen  216 GMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFD  278 (310)
T ss_pred             cceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhccc
Confidence            345566 778999998899999999999999999987788999999953 33456555444333

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.60  E-value=0.7  Score=34.93  Aligned_cols=62  Identities=10%  Similarity=0.012  Sum_probs=42.0

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-----------------CCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-----------------SNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-----------------~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..+....|+| +++.++-.. ++.|.+++..++...+...+-                 ...-.++-|||||++||....
T Consensus        43 ~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   43 PKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             TTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            4577899999 898877665 578999988776433222211                 123367899999999998776


Q ss_pred             C
Q 033677           79 C   79 (114)
Q Consensus        79 d   79 (114)
                      |
T Consensus       121 d  121 (353)
T PF00930_consen  121 D  121 (353)
T ss_dssp             E
T ss_pred             C
Confidence            6

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.14  E-value=1.2  Score=39.28  Aligned_cols=63  Identities=17%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCC---CEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGG---QLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg---~~la~~s~   78 (114)
                      -+.|++++.+| -++.+++|...|.+.+||++=+..+..+. .+..+++.+..+|-.   ...++++.
T Consensus      1195 hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1195 HGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             ccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence            34599999999 88999999999999999999887777765 445778888777632   34444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.90  E-value=0.81  Score=34.58  Aligned_cols=41  Identities=12%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           37 EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        37 Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+.+.+||+.+++... +......+....|||+|+.+|....
T Consensus        22 ~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~~   62 (353)
T PF00930_consen   22 KGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVRD   62 (353)
T ss_dssp             EEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEET
T ss_pred             ceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEec
Confidence            3678899999876433 3333567889999999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.52  E-value=1  Score=35.39  Aligned_cols=64  Identities=20%  Similarity=0.230  Sum_probs=42.4

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecC--CCCCeEEEE------ECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPR--FSNSVASLS------YNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~--~~~~v~~v~------fspdg~~la~~s~d   79 (114)
                      .++++++|.-++.+.|+.|-..|.|.+||++..+.. ..+.+  ...||..++      ..+.|.+++.++.+
T Consensus       236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~  308 (463)
T KOG1645|consen  236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV  308 (463)
T ss_pred             CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh
Confidence            679999999834478899999999999999975432 22222  234444433      33456677666655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=90.42  E-value=1  Score=33.65  Aligned_cols=40  Identities=15%  Similarity=0.160  Sum_probs=33.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP   55 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~   55 (114)
                      ...|..++++| ++..|++...+|.|.+|++=+-.....+.
T Consensus       229 ~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  229 QDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            34588999999 99999999999999999997766555554

>PRK13861 type IV secretion system protein VirB9; Provisional

Probab=90.37  E-value=1.4  Score=33.01  Aligned_cols=62  Identities=10%  Similarity=0.052  Sum_probs=45.5

Q ss_pred             eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--CcccccccCCCCcEEEEEcCc
Q 033677           35 DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVIEEPPQIFIIRIDD  100 (114)
Q Consensus        35 s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~~~~~~i~i~~~~~  100 (114)
                      ..|..|+........ +..+....+.++.|.|.++.++..++.+|  .|+....   .+.|||++.+.
T Consensus        29 ~~D~RIr~v~Y~p~~-V~~V~~~~G~~T~I~f~~gE~I~~va~GDt~sW~v~~~---~N~lfIKP~~~   92 (292)
T PRK13861         29 KLDPRMRYLAYNPDQ-VVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPR---GNYLFFKASKV   92 (292)
T ss_pred             CCCCceEEEEeCCCC-EEEEEEECCcEEEEEECCCCEEEEeccccccceEEecC---CcEEEEEECCC
Confidence            358888887776555 45566777889999999998877666666  7876432   45689998754

>PRK13885 conjugal transfer protein TrbG; Provisional

Probab=90.17  E-value=1.5  Score=32.97  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--Cccccccc-----CCCCcEEEEEcCc
Q 033677           32 VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVI-----EEPPQIFIIRIDD  100 (114)
Q Consensus        32 ~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~-----~~~~~i~i~~~~~  100 (114)
                      ..-+.||.|++- .  +.....+......++.|.|.|+.++..++.+|  .|......     ...+.|||++...
T Consensus        64 p~~g~DgrV~~~-Y--g~~~~~I~~apg~vt~I~L~pgE~I~~v~~GDt~~W~v~~~~sG~g~~~~~~i~IKP~~~  136 (299)
T PRK13885         64 PVAGSDGSIKFV-Y--GAQQPSIVCAVLQVCDIALQPGEQVNSINLGDTARWTVEPAITGSGANEVQHLIIKPMDV  136 (299)
T ss_pred             ceECCCCcEEEE-C--CCCeEEEEEeCCcEEEEEECCCCEEeeeccCCCcceEEeccccCCCCCceeEEEEEecCC
Confidence            345678888765 4  44455566667889999999988776556666  79866432     2234899999765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=90.14  E-value=1.2  Score=35.95  Aligned_cols=59  Identities=19%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             ecCeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      -.||.+.+|.| .++.|++  |..+..+.++|++.. ....++  ...=+.+-|||.++++.++.
T Consensus       274 ~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         274 KDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             cccceeeeecc-cCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEec
Confidence            56899999999 7766654  457889999999865 233222  22234566666666655543

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.74  E-value=1.2  Score=36.57  Aligned_cols=56  Identities=14%  Similarity=0.102  Sum_probs=34.3

Q ss_pred             eEEEEECCCCCCEEEEEeCC------------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNE------------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~D------------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...-.|+| ++..|++....            +.+.+.+++.+....   .....|..+.|||||..+|.-.
T Consensus       399 ~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        399 LTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             CCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence            44567899 87766665432            233333443332211   2356799999999999888655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=89.69  E-value=1.6  Score=32.60  Aligned_cols=46  Identities=22%  Similarity=0.481  Sum_probs=33.3

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-------CCCCeEEEEEC
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-------FSNSVASLSYN   67 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-------~~~~v~~v~fs   67 (114)
                      -++|+| |+.+|+.+...|+|+++|+... .+..+..       ....|..+.|-
T Consensus        48 kl~WSp-D~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl  100 (282)
T PF15492_consen   48 KLAWSP-DCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFL  100 (282)
T ss_pred             EEEECC-CCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEee
Confidence            689999 9999999999999999999753 3444432       12445555553

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.47  E-value=2.7  Score=30.25  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CeeeEEecCCCCCeEEEEECCCCCEEEE
Q 033677           29 GAFVTGDNEGYVAAWDAQS--RRRLFELPRFSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~--~~~~~~~~~~~~~v~~v~fspdg~~la~   75 (114)
                      ..|+.+.....|.+||+.+  .+.+..|... +.|..+.++..|+++++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvT   76 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVT   76 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEE
Confidence            3443435567899999983  3444555444 78999999999999987

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.44  E-value=2.1  Score=32.15  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=37.7

Q ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEE
Q 033677           22 VFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAV   75 (114)
Q Consensus        22 ~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~   75 (114)
                      ...+ ++.++..|+.|+..+..|.++..++.+.+-......+=+..| ++.++|+
T Consensus       100 ~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen  100 QCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             EEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence            3466 789999999999999999999999988764333333334445 4554443

>PRK10115 protease 2; Provisional

Probab=89.23  E-value=6.7  Score=32.70  Aligned_cols=61  Identities=8%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeC-CC----cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDN-EG----YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~-Dg----~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +.+..+.++| ++++|+-+-+ +|    .|++-|+.++..+....  ...-..++|.+|++.|+....+
T Consensus       127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~  192 (686)
T PRK10115        127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKH  192 (686)
T ss_pred             EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEec
Confidence            5577889999 8887665433 33    67788888775332211  1111469999999877776654

>smart00564 PQQ beta-propeller repeat

Probab=89.20  E-value=1.5  Score=21.10  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=20.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEE
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFE   53 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~   53 (114)
                      .+++.++.+|.+..+|.++++.+.+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            4678888999999999999886654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.95  E-value=4.3  Score=30.59  Aligned_cols=61  Identities=20%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeC-CCCeeeEE--ec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDA-QSRRRLFE--LP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~-~~~~~~~~--~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+.|.| ++.+++.+ ..|.|++=+. .+......  .+  .....+..++|.++++++|+|...
T Consensus       188 riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  188 RIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             -EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             eehhceecC-CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            489999999 88776655 7888888772 22222111  11  123357899999999999887763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=88.88  E-value=2.2  Score=32.18  Aligned_cols=63  Identities=21%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeC-----------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDN-----------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~-----------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ....|++...| ++.+.++-..           -|.++.+|. .+...+.+..+-...+.|+|||||+.|..+-+.
T Consensus       110 ~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         110 LNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence            45678889999 8877665443           133444443 455555555545556799999999888777664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.53  E-value=1.7  Score=36.68  Aligned_cols=60  Identities=20%  Similarity=0.375  Sum_probs=42.8

Q ss_pred             cCeEEEEECCCC-----CCEEEEEeCCCcEEEEeCCC--CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLS-----RGAFVTGDNEGYVAAWDAQS--RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~-----~~~~~t~s~Dg~I~iwD~~~--~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -|+.+|+++| +     ..+|++||..| +.++.-+=  .+....+..-.++|.+++|.  |.++|-++.+
T Consensus       113 rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~  179 (846)
T KOG2066|consen  113 RPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD  179 (846)
T ss_pred             CcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC
Confidence            4788999999 6     36899999999 66654321  11111344567899999997  7799887765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.29  E-value=2  Score=36.44  Aligned_cols=65  Identities=15%  Similarity=0.235  Sum_probs=49.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---------------eEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---------------LFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---------------~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ......+++|+. .+.+|++||.||.+++..+.+...               -.++.+|..+|.-+.|+.+.+.|-++..
T Consensus        13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            344578999999 889999999999999987665211               1234578899999999988777766555


Q ss_pred             C
Q 033677           79 C   79 (114)
Q Consensus        79 d   79 (114)
                      +
T Consensus        92 ~   92 (1189)
T KOG2041|consen   92 S   92 (1189)
T ss_pred             C
Confidence            4

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=88.28  E-value=1.3  Score=34.34  Aligned_cols=68  Identities=12%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             CCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE---EecCC-----CCCeEEEEECCC-CCEEEEEeCC
Q 033677           10 DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF---ELPRF-----SNSVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        10 ~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~---~~~~~-----~~~v~~v~fspd-g~~la~~s~d   79 (114)
                      -.-.|.+-||+|+++. +++.|+++ +|=.|.+|.++--..-.   -++.+     ..-|++..|+|. ..+|+.+++-
T Consensus       159 ~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK  235 (433)
T KOG1354|consen  159 YANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK  235 (433)
T ss_pred             ccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence            3446789999999999 98888877 57789999987432222   22222     356889999995 4567666553

>PRK02888 nitrous-oxide reductase; Validated

Probab=88.26  E-value=2.9  Score=34.65  Aligned_cols=42  Identities=10%  Similarity=0.109  Sum_probs=30.9

Q ss_pred             CCcEEEEeCCC----CeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           37 EGYVAAWDAQS----RRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        37 Dg~I~iwD~~~----~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ++.|.+.|.++    +..+..+...+.....+.+||||+++.++..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence            46788999887    3233333356777889999999999887665

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=88.24  E-value=1.1  Score=41.27  Aligned_cols=64  Identities=17%  Similarity=0.297  Sum_probs=51.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..|..+.=|| .....+||+.||.+++|--..+..+..+. .....|+.+.|+-.|..++++..|
T Consensus      2208 v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2208 VENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred             cCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccC
Confidence            44455666788 67788999999999999887777777665 234789999999999999998887

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.96  E-value=1.5  Score=37.47  Aligned_cols=64  Identities=17%  Similarity=0.321  Sum_probs=42.1

Q ss_pred             CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC
Q 033677            1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG   70 (114)
Q Consensus         1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg   70 (114)
                      ||+|-|-..++-    -+++|.-+| .++.|+.+..||.|++|+...++..+.. ....|--.+.|...|
T Consensus         4 t~~~s~~~k~~e----~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg   67 (1636)
T KOG3616|consen    4 TFDCSRDPKEDE----FTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG   67 (1636)
T ss_pred             cccccCCccccc----eeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc
Confidence            578877544433    367889999 8899999999999999988765532211 222333345555444

>PF01011 PQQ: PQQ enzyme repeat family

Probab=87.86  E-value=1.9  Score=21.90  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=22.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEecC
Q 033677           30 AFVTGDNEGYVAAWDAQSRRRLFELPR   56 (114)
Q Consensus        30 ~~~t~s~Dg~I~iwD~~~~~~~~~~~~   56 (114)
                      .++.+..||.|...|.++++.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456668999999999999998877763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=87.60  E-value=0.72  Score=37.06  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=45.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      -..|+..++++| .+..|++.-.. -|.+|+-.....+..+.  ...|..+.|||.++||.+=+
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~   90 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWS   90 (561)
T ss_pred             cCcchhheeecC-cchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeec
Confidence            367899999999 88877776554 47899987766444443  34588999999999997643

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.92  E-value=4.1  Score=33.65  Aligned_cols=64  Identities=16%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC-----Ccccc
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC-----TYQEA   84 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d-----~~~~~   84 (114)
                      ++.||| ....|+.-.....-.+++++.. ..++.-....+-|.+.+|.+||..|+++-+.     .|+..
T Consensus       117 GCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  117 GCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            688999 7666655544444345666533 2233223556789999999999877665543     68755

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.91  E-value=2.7  Score=21.15  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=25.6

Q ss_pred             CCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE
Q 033677           27 SRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY   66 (114)
Q Consensus        27 ~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f   66 (114)
                      +++ ++++...++.|.++|..+++.+..+.. ......++|
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            454 455555688999999988887776654 333345554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=86.85  E-value=2.3  Score=36.67  Aligned_cols=55  Identities=22%  Similarity=0.344  Sum_probs=44.3

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      |.-+..+   +..+.+|...|+|.+-|.++.+.++++..|.+.|..+...  |.+|++++
T Consensus       180 v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG  234 (1118)
T KOG1275|consen  180 VTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCG  234 (1118)
T ss_pred             eEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEee
Confidence            4444444   3788999999999999999999999999999999877764  77776654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=86.49  E-value=6.6  Score=28.72  Aligned_cols=58  Identities=14%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             CeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~~la~~s   77 (114)
                      .+.+|+|+| +. .+|++....+.|..++.+ ++.+..++-. ..-.-.|++-.++.+ +...
T Consensus        23 e~SGLTy~p-d~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~-vl~~   82 (248)
T PF06977_consen   23 ELSGLTYNP-DTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRY-VLSE   82 (248)
T ss_dssp             -EEEEEEET-TTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEE-EEEE
T ss_pred             CccccEEcC-CCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEE-EEEE
Confidence            488999999 65 567777778888888875 6777776532 345678888776644 4444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=86.31  E-value=5.7  Score=31.04  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=19.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc
Q 033677           62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD  100 (114)
Q Consensus        62 ~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~  100 (114)
                      ....|+|||+++...|..        .++.+||+-.+-+
T Consensus       354 Php~FSPDgk~VlF~Sd~--------~G~~~vY~v~i~~  384 (386)
T PF14583_consen  354 PHPSFSPDGKWVLFRSDM--------EGPPAVYLVEIPD  384 (386)
T ss_dssp             ---EE-TTSSEEEEEE-T--------TSS-EEEEEE--C
T ss_pred             CCCccCCCCCEEEEECCC--------CCCccEEEEeCcc
Confidence            368999999999888744        6678899887643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.27  E-value=2.7  Score=33.60  Aligned_cols=66  Identities=20%  Similarity=0.422  Sum_probs=50.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC------Cee---------eEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS------RRR---------LFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~------~~~---------~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .|..||..+.++| .+..+++....|.|.-|....      .+.         +..+.......+++.|+|+|..+++-.
T Consensus       142 lH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             cccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            5688999999999 999999998899999998873      111         111223345678999999999998877


Q ss_pred             CC
Q 033677           78 SC   79 (114)
Q Consensus        78 ~d   79 (114)
                      .|
T Consensus       221 ~D  222 (558)
T KOG0882|consen  221 PD  222 (558)
T ss_pred             cc
Confidence            66

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.12  E-value=2.3  Score=33.96  Aligned_cols=27  Identities=11%  Similarity=0.206  Sum_probs=23.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEe
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFEL   54 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~   54 (114)
                      ..++++.+.|+.+++||+.++.++...
T Consensus       230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  230 DTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            468899999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=85.69  E-value=8.6  Score=29.02  Aligned_cols=61  Identities=11%  Similarity=-0.067  Sum_probs=47.0

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeE-EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLF-ELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~-~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++.++++| ++.++++.+....|-+|.+....  .+. ......+.=-+.+||.....+|+++.|
T Consensus       161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd  224 (344)
T KOG4532|consen  161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD  224 (344)
T ss_pred             eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence            78899999 99999999999999999887532  222 122334445688999999999999988

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=85.45  E-value=5.8  Score=31.26  Aligned_cols=62  Identities=18%  Similarity=0.175  Sum_probs=39.0

Q ss_pred             cCeEEEEECCCCCCEEEE--EeCC--CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVT--GDNE--GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t--~s~D--g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+..-.|.| ++..++-  -...  ..+.++|+.+++...... ....-..-+|||||+.||.....
T Consensus       193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECC
Confidence            3455667888 7654322  2222  358889999876544333 23334467999999998877654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.27  E-value=10  Score=28.57  Aligned_cols=60  Identities=17%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      ..++++...+ ++.++++++.-..+.-||--...=...-......|.+|.|+|++.+..++
T Consensus       145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~  204 (302)
T PF14870_consen  145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA  204 (302)
T ss_dssp             --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred             ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe
Confidence            4578888888 88877666544444568754321111112346789999999999876544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=84.51  E-value=2.4  Score=37.45  Aligned_cols=56  Identities=14%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             EEEEECCCCCCEEEE-----EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           19 NDVVFSPLSRGAFVT-----GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t-----~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      +.|+|-. ++++|++     ......|++||.+ +..-..-......=.+++|-|.|.++|+-
T Consensus       199 ~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~i  259 (1265)
T KOG1920|consen  199 TSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAI  259 (1265)
T ss_pred             ceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeee
Confidence            3689998 9999888     3223799999987 43222222333444689999999999873

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=84.36  E-value=11  Score=29.41  Aligned_cols=54  Identities=11%  Similarity=0.146  Sum_probs=39.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGG   70 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg   70 (114)
                      .++..++++| +++.++.-..+|.+.+...+-.+.+..+... ..+...+.|.-+.
T Consensus       217 ~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  217 GPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            4799999999 9999999989999988876555555555422 3455677776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.34  E-value=3.2  Score=34.62  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=55.7

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC---CcccccccCCCCc
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC---TYQEATVIEEPPQ   92 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d---~~~~~~~~~~~~~   92 (114)
                      |.--++.- ....++.|+.-|.+++|....+.. ...+  +-...+..++.|++.+++|+|+..   .|.--++.+.+..
T Consensus        36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEeec-CCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            33344555 568899999999999998776553 3333  244567788899999888888765   3433344577777


Q ss_pred             EEEEEcCc
Q 033677           93 IFIIRIDD  100 (114)
Q Consensus        93 i~i~~~~~  100 (114)
                      +|+.+...
T Consensus       114 ~~~t~~d~  121 (726)
T KOG3621|consen  114 DYVTPCDK  121 (726)
T ss_pred             eeeccccc
Confidence            88877654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=84.09  E-value=3.4  Score=31.15  Aligned_cols=50  Identities=24%  Similarity=0.260  Sum_probs=32.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-EEEECCCCCEEEEEeCC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-SLSYNHGGQLLAVASSC   79 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-~v~fspdg~~la~~s~d   79 (114)
                      ++.+++++.+|.|.++|.++++.+.+++.....+. +-.+. +++ |.+++.|
T Consensus       320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~d  370 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRD  370 (377)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCC
Confidence            35788888999999999999988877765443332 22222 333 4455555

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=83.89  E-value=6.3  Score=34.04  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=40.2

Q ss_pred             CCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc
Q 033677           37 EGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD  100 (114)
Q Consensus        37 Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~  100 (114)
                      .+.|.+=|........ + .....+|-+=+|||||+.||.+.+..     ...++..||++++..
T Consensus       328 ~~~L~~~D~dG~n~~~-ve~~~~~~i~sP~~SPDG~~vAY~ts~e-----~~~g~s~vYv~~L~t  386 (912)
T TIGR02171       328 TGNLAYIDYTKGASRA-VEIEDTISVYHPDISPDGKKVAFCTGIE-----GLPGKSSVYVRNLNA  386 (912)
T ss_pred             CCeEEEEecCCCCceE-EEecCCCceecCcCCCCCCEEEEEEeec-----CCCCCceEEEEehhc
Confidence            3577777777654332 3 34567888889999999999866541     123567799999865

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.75  E-value=8  Score=23.85  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=27.3

Q ss_pred             eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           35 DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        35 s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+|.+..||..+++......+. .-.+.|+++||++.+.++=
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence            34578888999988754444332 3468999999999776653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.35  E-value=0.86  Score=40.00  Aligned_cols=63  Identities=11%  Similarity=0.025  Sum_probs=45.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -..++.|+|.....++....|+.|.+..+........-.......++++|+|-|+.+++|-..
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn  219 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN  219 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC
Confidence            355788999445677888889999987765433222222456678999999999999998654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=83.04  E-value=19  Score=27.65  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=42.7

Q ss_pred             eEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...+++.| ++..+..+..   ++.+.+.|..+.+.......-..+ ..++++|+|..+....
T Consensus       118 P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~  178 (381)
T COG3391         118 PVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN  178 (381)
T ss_pred             CceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe
Confidence            45789999 7765555444   689999999988877775433334 8999999999666555

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.93  E-value=3  Score=34.16  Aligned_cols=51  Identities=14%  Similarity=0.345  Sum_probs=39.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +..++.+|..|.|++||.-.-+....+++....|.-|..+.+|+++.+.+.
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            468999999999999996544433456777888999999999987665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=82.34  E-value=2  Score=33.24  Aligned_cols=44  Identities=16%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             ECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC----CCCeEEEEEC
Q 033677           23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF----SNSVASLSYN   67 (114)
Q Consensus        23 f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~----~~~v~~v~fs   67 (114)
                      .+| ....++++|+|-..++|.++.+..+.+++..    ...+.+++|.
T Consensus       354 v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  354 VKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            445 4567888999999999999999988877532    2245566664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=82.25  E-value=3.5  Score=31.69  Aligned_cols=61  Identities=16%  Similarity=0.311  Sum_probs=42.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCC------------CCCe---EEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRF------------SNSV---ASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~------------~~~v---~~v~fspdg~~la~~s   77 (114)
                      +..|.++.|.| ++++|++-. =-++++||.+.. .++++++-|            ...|   ..+.||-|.+.+.+|+
T Consensus       280 vsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs  356 (460)
T COG5170         280 VSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS  356 (460)
T ss_pred             hhhhcceEEcC-CCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence            56788999999 888877654 358999999864 455665432            1222   3678887777776665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.64  E-value=14  Score=31.84  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=45.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC---CC-eeeEEecCCCCCeEEEEECCCCCE--EEEEeC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ---SR-RRLFELPRFSNSVASLSYNHGGQL--LAVASS   78 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~---~~-~~~~~~~~~~~~v~~v~fspdg~~--la~~s~   78 (114)
                      ..+|+..|+.+. +-..+++|-.||.|..+.-+   ++ ....-......+||.++|..+++.  ||+...
T Consensus       124 ~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~  193 (933)
T KOG2114|consen  124 NPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE  193 (933)
T ss_pred             CCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence            367899999998 88899999999999988432   22 211112244689999999999876  444433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=81.64  E-value=17  Score=26.25  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEe-CCCCee-eEEec--CCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWD-AQSRRR-LFELP--RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD-~~~~~~-~~~~~--~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+..-+|.+ ++.+++....+....++. ..++.. .....  .....|+++.+||||..+|.-..
T Consensus        67 ~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen   67 SLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             ccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEe
Confidence            455668888 777666666566666663 233321 11222  12228999999999998887663

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=81.29  E-value=9.7  Score=29.72  Aligned_cols=51  Identities=20%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--C------CCCCeEEEEEC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--R------FSNSVASLSYN   67 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~------~~~~v~~v~fs   67 (114)
                      ..+|++++.+. - .+++.|+.+|.+.+.|+|....++.-.  .      ....|+++.|+
T Consensus        86 ~g~vtal~~S~-i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   86 QGPVTALKNSD-I-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             S-SEEEEEE-B-T-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             CCcEeEEecCC-C-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence            46799999875 4 589999999999999999887776522  2      23467888886

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13839 conjugal transfer protein TrbG; Provisional

Probab=81.14  E-value=13  Score=27.85  Aligned_cols=66  Identities=11%  Similarity=0.128  Sum_probs=41.8

Q ss_pred             EEEEeCCCcEEE-EeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--Cccccccc-----CCCCcEEEEEcCc
Q 033677           31 FVTGDNEGYVAA-WDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVI-----EEPPQIFIIRIDD  100 (114)
Q Consensus        31 ~~t~s~Dg~I~i-wD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~-----~~~~~i~i~~~~~  100 (114)
                      +...+.||.+.+ |.-.. .   ++......++.|.|.|+..+...+.+|  .|......     ...+.|||++.+.
T Consensus        52 ~~~~~~dg~v~f~yg~~~-p---~v~~apg~vt~I~L~pgE~I~~va~GDt~~W~v~p~~~G~~~~~~~~lfIKP~~~  125 (277)
T PRK13839         52 LVTKGPDGKVIFLFGETQ-P---SVVCSPLQVCDIELQGGEVVRDVLVGDTVRWKVEPATSGAAGGQAIHLIVKPSEP  125 (277)
T ss_pred             ceEEcCCCCEEEEcCCCC-c---EEEEeCCcEEEEEECCCCEEEeeccCCCcceEEecccCCCCccceeEEEEeCCCC
Confidence            346667776554 43222 1   333456779999999988766555556  79855332     2236799998765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=81.14  E-value=7.7  Score=33.71  Aligned_cols=67  Identities=10%  Similarity=0.138  Sum_probs=48.4

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEe---CCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccc
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWD---AQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEAT   85 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD---~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~   85 (114)
                      .-+.|+|.-...+++++..|.+.+-|   +.+. .-++.+......+.++.+|++|..||.|-.+    .|..-+
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            35678994457899999999999999   4333 2223334445569999999999999998776    576443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		3e-04
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		3e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-04
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		6e-04
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		6e-04

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
           FRCH  +    +   PVN + FSP  +  +  G ++G ++ W+ Q+R+++    +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61  VASLSYNHGGQLLAVASSCTYQEATVIEE 89
           V  ++ +     LA +   T++    I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
           FRCH  +    +   PVN + FSP  +  +  G ++G ++ W+ Q+R+++    +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61  VASLSYNHGGQLLAVASSCTYQEATVIEE 89
           V  ++ +     LA +   T++    I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2   FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
           F+CH  +         +  VN + F P+  G   T  ++G  + WD  +R +L    +  
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59  NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
             +++  +NH G + A ASS  + +      P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
           FRCH  +    +   PVN + FSP  +  +  G ++G ++ W+ Q+R+++    +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61  VASLSYNHGGQLLAVASSCTYQEATVIEE 89
           V  ++ +     LA +   T++    I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2   FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
           FRCH  +    +   PVN + FSP  +  +  G ++G ++ W+ Q+R+++    +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61  VASLSYNHGGQLLAVASSCTYQEATVIEE 89
           V  ++ +     LA +   T++    I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.66
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.6
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.59
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.45
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.43
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.42
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.42
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.39
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.39
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.39
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.39
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.38
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.36
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.36
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.36
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.34
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.33
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.33
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.33
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.33
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.32
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.32
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.3
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.3
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.3
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.3
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.29
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.29
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.29
2pm7_B	297	Protein transport protein SEC13, protein transport	99.29
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.28
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.27
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.27
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.27
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.27
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.26
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.26
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.25
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.25
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.24
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.24
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.24
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.22
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.22
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.22
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.21
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.21
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.21
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.21
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.2
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.2
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.2
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.2
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.2
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.19
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.19
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.19
2pm7_B	297	Protein transport protein SEC13, protein transport	99.18
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.18
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.18
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.17
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.17
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.17
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.17
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.17
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.16
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.16
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.16
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.15
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.15
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.14
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.14
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.12
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.12
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.12
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.12
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.11
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.11
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.1
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.1
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.1
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.09
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.09
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.08
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.08
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.07
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.07
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.07
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.05
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.03
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.02
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.02
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.02
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.02
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.01
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.01
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.0
3jro_A	753	Fusion protein of protein transport protein SEC13	98.99
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.99
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.97
3jro_A	753	Fusion protein of protein transport protein SEC13	98.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.72
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.71
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.7
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.68
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.67
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.66
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.63
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.61
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.59
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.56
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.43
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.42
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.38
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.34
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.28
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.23
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.21
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.15
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.15
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.15
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.14
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.11
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.11
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.09
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.09
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.07
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.06
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.01
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.0
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.98
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.94
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.87
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.53
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.51
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.47
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.44
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.41
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.37
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.04
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.02
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.95
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.91
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.91
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.81
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.76
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.3
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.07
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.95
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.89
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	95.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.46
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.98
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.96
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.89
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	94.57
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	94.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	93.96
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	93.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	93.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	92.95
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.9
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	92.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.87
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	92.57
2ece_A	462	462AA long hypothetical selenium-binding protein;	92.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	91.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	91.4
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	91.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	91.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	90.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	89.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	89.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	89.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.43
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	89.01
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	88.59
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	88.4
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	88.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	88.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	88.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	87.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	86.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	86.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.39
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	86.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	86.13
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	85.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	85.52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	85.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	85.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	85.27
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	85.03
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	84.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	84.23
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.95
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	82.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	82.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	82.35
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	82.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	82.16
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	82.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	82.01
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	81.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	81.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	81.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	81.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	81.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	81.17

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.66  E-value=1.9e-15  Score=108.36  Aligned_cols=88  Identities=23%  Similarity=0.475  Sum_probs=79.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccc---cCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATV---IEE   89 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~---~~~   89 (114)
                      .+.++|++++|+| ++++|++++.||.|++||+++++.+..+..|..+|++++|+|+|++||+++.|+|..+-+   .+.
T Consensus       271 ~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~  349 (368)
T 3mmy_A          271 QDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK  349 (368)
T ss_dssp             EEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred             ccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence            4456899999999 999999999999999999999999999999999999999999999999999999987754   367


Q ss_pred             CCcEEEEEcCcc
Q 033677           90 PPQIFIIRIDDI  101 (114)
Q Consensus        90 ~~~i~i~~~~~~  101 (114)
                      ++.|+++++.+.
T Consensus       350 ~~~i~~~~~~~~  361 (368)
T 3mmy_A          350 KNYIFLRNAAEE  361 (368)
T ss_dssp             CCEEEEECCTTT
T ss_pred             cceeeehhcCcc
Confidence            778999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.60  E-value=1.3e-14  Score=107.35  Aligned_cols=65  Identities=9%  Similarity=0.050  Sum_probs=60.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||+++++++..+ .+|..+|++|+|||||++||+|+.|
T Consensus       268 ~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          268 RFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             SCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred             CCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence            356799999999 9999999999999999999999988876 6899999999999999999999999

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.59  E-value=1.6e-14  Score=103.39  Aligned_cols=95  Identities=25%  Similarity=0.523  Sum_probs=82.4

Q ss_pred             ceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCCEEEEEeCCC
Q 033677            2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQLLAVASSCT   80 (114)
Q Consensus         2 ~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~~la~~s~d~   80 (114)
                      |++|+....+..|.++|++++|+| ++.+|++++.||.|++||+++++.+..+..+ ..+|++++  |+|++||+++.|.
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            456665444455677999999999 9999999999999999999999999999888 99999999  9999999999999


Q ss_pred             c-ccccc-----cCCCCcEEEEE-cC
Q 033677           81 Y-QEATV-----IEEPPQIFIIR-ID   99 (114)
Q Consensus        81 ~-~~~~~-----~~~~~~i~i~~-~~   99 (114)
                      | .++.+     ...++.|||+. ++
T Consensus       315 ~~~~~~~~~~~~~~~~~~i~~~~~~~  340 (342)
T 1yfq_A          315 TFKTNAAIDQTIELNASSIYIIFDYE  340 (342)
T ss_dssp             HHHHCSSSCTTSCCCCCEEEEEETCS
T ss_pred             cccccccccccCCCCCceEEEecccc
Confidence            9 87765     58888999999 53

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.45  E-value=1.4e-12  Score=95.87  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=64.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCeeeEEec-C-CCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGY-VAAWDAQSRRRLFELP-R-FSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~-I~iwD~~~~~~~~~~~-~-~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      .|..+|++|+|+| ++.+|++|+.||+ |++||+++++++..+. + |..+|++++|+|+|++||+++.|    .|+..
T Consensus       193 ~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          193 AHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             ccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            3567899999999 9999999999998 9999999999999887 5 89999999999999999999988    46643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.43  E-value=1.6e-12  Score=99.33  Aligned_cols=68  Identities=26%  Similarity=0.415  Sum_probs=61.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||. +++++..+.+|...|++++|+|||++||+++.|    .|+.
T Consensus        15 H~~~V~~~a~sp-dg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~   86 (577)
T 2ymu_A           15 HSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR   86 (577)
T ss_dssp             CSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            467899999999 9999999999999999995 677888899999999999999999999999988    5763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.42  E-value=2.5e-12  Score=92.26  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++.+|++++.||.|++||++++..+..+..+..+|.+++|+|++++|++|+.|
T Consensus        12 h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A           12 RSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             ECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence            355699999999 99999999999999999999999999999999999999999999999999988

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.42  E-value=3e-12  Score=91.18  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             eecCeEEEEECCCC-CCEEEEEeCCCcEEEEeCCCCe-----eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS-RGAFVTGDNEGYVAAWDAQSRR-----RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~-~~~~~t~s~Dg~I~iwD~~~~~-----~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| + +++|+|||.||+|++||+.+.+     ....+.+|...|++++|+|+|++|++++.|
T Consensus        37 H~~~V~~v~~sp-~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           37 HNGWVTQIATTP-QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             CSSCEEEEEECT-TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCEEEEEEeC-CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            467899999999 6 5899999999999999987643     455677899999999999999999999988

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.39  E-value=5.2e-12  Score=91.85  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      |..+|++++|+| ++.+|++|+.|++|++||+++++.+..+.+|..+|.+++|+|+|++|++++.|    .|+.
T Consensus        75 h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           75 HNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             CSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            466899999999 99999999999999999999999999999999999999999999999999988    4653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.39  E-value=3.2e-12  Score=95.54  Aligned_cols=68  Identities=28%  Similarity=0.517  Sum_probs=63.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++++|+| ++.+|++|+.||.|++||+.+++....+.+|...|++++|+|+|++||+|+.|    .|+
T Consensus       107 h~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          107 HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             cCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            567899999999 99999999999999999999999999999999999999999999999999988    465

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.39  E-value=5.3e-12  Score=91.68  Aligned_cols=69  Identities=22%  Similarity=0.398  Sum_probs=63.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      |..+|++++|+| ++++|++|+.||.|++||+++++....+.+|...|.+++|+|+|.+|++++.|    .|+.
T Consensus       205 h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          205 HAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV  277 (321)
T ss_dssp             CSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            456799999999 99999999999999999999999888999999999999999999999999988    4663

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.39  E-value=6.1e-12  Score=91.35  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=60.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|.+++|+| ++++|++|+.||.|++||+++++.+..+..|..+|++++|+|+|++||+|+.|
T Consensus       164 ~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          164 GKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTT
T ss_pred             CceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC
Confidence            44689999999 99999999999999999999999999999999999999999999999999988

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.38  E-value=1.3e-11  Score=88.00  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.|
T Consensus        22 h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           22 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence            467899999999 99999999999999999999999888899999999999999999999999988

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.36  E-value=1.1e-11  Score=90.22  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=61.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++.+|++|+.||.|++||++++.+...+..|...|++++|+|+|.+||+|+.|
T Consensus       183 h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            456799999999 99999999999999999999999999999999999999999999999999988

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.36  E-value=5.3e-12  Score=91.24  Aligned_cols=68  Identities=12%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++++|+| ++.+|++|+.|++|++||+++++.+..+.+|..+|.+++|+|++.+|++|+.|    .|+
T Consensus        64 h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           64 HSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            466799999999 99999999999999999999999999999999999999999999999999998    465

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.36  E-value=1.4e-11  Score=90.76  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=60.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.||.|++||+++++++..+.+|...|++++|+|++ .+|++++.|
T Consensus       126 H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          126 HDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc
Confidence            466799999999 99999999999999999999999999999999999999999998 478889888

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.6e-11  Score=87.79  Aligned_cols=66  Identities=14%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++++|+| ++++|++++.||.|++||+.+++.+..+..|...|++++|+|++++|++++.|
T Consensus        30 ~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           30 GHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             CCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence            3567899999999 99999999999999999999999999999999999999999999999999988

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.34  E-value=2.4e-11  Score=88.40  Aligned_cols=65  Identities=17%  Similarity=0.380  Sum_probs=61.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++|+.||.|++||+.+++.+..+..+...|.+++|+|+|++||+|+.|
T Consensus        54 H~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  118 (340)
T 1got_B           54 HLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC
Confidence            467899999999 99999999999999999999999898899999999999999999999999988

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.33  E-value=4.1e-12  Score=93.83  Aligned_cols=65  Identities=17%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++|+.||+|++||+.+++....+..|...|.+++|+|+|++||+|+.|
T Consensus        65 H~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           65 HSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             CSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             cccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            467899999999 99999999999999999999999999999999999999999999999999988

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.33  E-value=7.2e-12  Score=92.18  Aligned_cols=64  Identities=11%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++ .+|++|+.||+|++||+++++.+.. .+|...|++|+|+| ++.+||+++.|
T Consensus       268 ~~~~v~~l~~sp-~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          268 HSQNITGLAYSY-HSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             CSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             cceeEEEEEEcC-CCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            456799999999 76 6799999999999999999887654 47999999999999 79999999988

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.33  E-value=3.7e-11  Score=87.16  Aligned_cols=69  Identities=19%  Similarity=0.365  Sum_probs=56.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-------CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-------RRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-------~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||++.       .+.+..+.+|..+|.+++|+|+|++||+|+.|    .|+
T Consensus        57 h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           57 HKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            677899999999 999999999999999999853       34566778999999999999999999999988    466


Q ss_pred             c
Q 033677           83 E   83 (114)
Q Consensus        83 ~   83 (114)
                      .
T Consensus       136 ~  136 (330)
T 2hes_X          136 T  136 (330)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.33  E-value=1.2e-11  Score=88.60  Aligned_cols=69  Identities=9%  Similarity=0.183  Sum_probs=63.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      |..+|.+++|+| ++++|++|+.|+.|++||+++++.+..+..|...|++++|+|++.+|++|+.|    .|+.
T Consensus        54 ~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           54 TETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             CSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             cCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            356799999999 99999999999999999999999999999999999999999999999999998    4663

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.32  E-value=1.4e-11  Score=92.08  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|.+|++|+.|
T Consensus       149 h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D  213 (410)
T 1vyh_C          149 HTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD  213 (410)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             cCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            466899999999 99999999999999999999999999999999999999999999999999988

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.32  E-value=2.3e-11  Score=88.71  Aligned_cols=65  Identities=23%  Similarity=0.364  Sum_probs=59.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC--eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR--RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||+..+  +++..+.+|..+|++++|+|+|++||+++.|
T Consensus        60 h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D  126 (345)
T 3fm0_A           60 HQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD  126 (345)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC
Confidence            467899999999 9999999999999999999876  4567788999999999999999999999988

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.30  E-value=7.6e-12  Score=95.51  Aligned_cols=64  Identities=30%  Similarity=0.430  Sum_probs=58.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++++.||.|++||. +++.+..+.+|..+|++++|+|||++|++++.|
T Consensus       507 h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          507 HSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             CSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            456799999999 9999999999999999996 577788889999999999999999999999988

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.30  E-value=4.7e-11  Score=86.60  Aligned_cols=65  Identities=22%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC----CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS----RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~----~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||++.    .+++..+..|...|++++|+|++.+||+++.|
T Consensus       106 h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  174 (330)
T 2hes_X          106 HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD  174 (330)
T ss_dssp             ---CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence            467899999999 999999999999999999953    24566788999999999999999999999988

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.30  E-value=2.9e-11  Score=85.31  Aligned_cols=64  Identities=20%  Similarity=0.366  Sum_probs=57.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGD--NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s--~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++..+.|.| .+..+++++  .||.|++||+++++.+..+.+|..+|++++|+|||++||+|+.|
T Consensus       240 ~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          240 HSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             SSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            45688999999 777766544  79999999999999999999999999999999999999999988

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.30  E-value=5.4e-11  Score=84.75  Aligned_cols=65  Identities=25%  Similarity=0.367  Sum_probs=61.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++++.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.|
T Consensus        64 h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           64 HKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            456799999999 99999999999999999999999999999999999999999999999999988

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.29  E-value=4e-11  Score=84.52  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECC--CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNH--GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++|+.||.|++||+.++    +....+..|..+|++++|+|  ++++|++++.|
T Consensus        10 H~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A           10 HDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            466799999999 9999999999999999999876    45566778999999999999  69999999988

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.29  E-value=1.9e-11  Score=89.67  Aligned_cols=64  Identities=23%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++.+++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|...|++++|+|||++||+|+.|
T Consensus       284 ~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          284 IFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             CSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            45789999999 99999999999999999999999888899999999999999999999999988

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.29  E-value=3.8e-11  Score=88.20  Aligned_cols=66  Identities=17%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++++|+| ++.+|++++.||.|++||+++++.+..+..|...|++++|+|++.+|++++.|
T Consensus       137 ~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          137 AHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             SSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             cccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC
Confidence            3567899999999 99999999999999999999999898999999999999999999999999988

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.29  E-value=4.6e-11  Score=85.37  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC--eeeEEecCCCCCeEEEEECCC--CCEEEEEeCC----Cccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR--RRLFELPRFSNSVASLSYNHG--GQLLAVASSC----TYQE   83 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~~~~~~v~~v~fspd--g~~la~~s~d----~~~~   83 (114)
                      |..+|++++|+| ++++|++|+.|+.|++||+.+.  +.+..+.+|..+|.+++|+|+  |++||+|+.|    .|+.
T Consensus         8 h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            8 HNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             CcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            466799999999 9999999999999999999753  567788899999999999874  8999999988    5764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.28  E-value=7.3e-11  Score=86.89  Aligned_cols=66  Identities=23%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      +...+++++|+|.++++|++|+.||.|++||+++++++..+.+|...|++++|+|+| ++||+|+.|
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence            355689999999445789999999999999999999999999999999999999998 579999988

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.27  E-value=3.4e-11  Score=84.87  Aligned_cols=65  Identities=23%  Similarity=0.338  Sum_probs=58.3

Q ss_pred             eecCeEEEEECCCCC----CEEEEEeCCCcEEEEeCCCC-----------------------------------------
Q 033677           14 HLVPVNDVVFSPLSR----GAFVTGDNEGYVAAWDAQSR-----------------------------------------   48 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~----~~~~t~s~Dg~I~iwD~~~~-----------------------------------------   48 (114)
                      |..+|++++|+| ++    ++|++++.||.|++||++++                                         
T Consensus       213 h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          213 HKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             CCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             CCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence            467899999999 87    79999999999999999875                                         


Q ss_pred             -----eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           49 -----RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        49 -----~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                           +.+..+..|...|++++|+|+|++||+++.|
T Consensus       292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d  327 (351)
T 3f3f_A          292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD  327 (351)
T ss_dssp             CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETT
T ss_pred             ccccccEEEEEecccccEEEEEEcCCCCEEEEecCC
Confidence                 5666677899999999999999999999988

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.27  E-value=4.4e-11  Score=87.75  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++.+|++|+.||.|++||..+++....+..+...|.+++|+|+|.+||+++.|
T Consensus        63 H~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           63 HGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred             CCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            467899999999 99999999999999999999998888888888899999999999999999988

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=2.1e-11  Score=88.51  Aligned_cols=67  Identities=10%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecC-CCCCeEEEEECCCCCEEEEEeCC---Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPR-FSNSVASLSYNHGGQLLAVASSC---TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~-~~~~v~~v~fspdg~~la~~s~d---~~~   82 (114)
                      ..+|++++|+| ++.+|++|+.||.|++||+++++.+ ..+.. |..+|++++|+|+|.+|++++.+   .|+
T Consensus       170 ~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd  241 (343)
T 3lrv_A          170 DVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFD  241 (343)
T ss_dssp             SCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred             CCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence            44699999999 9999999999999999999999877 67777 89999999999999999999955   465

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.27  E-value=4.5e-11  Score=88.22  Aligned_cols=65  Identities=28%  Similarity=0.381  Sum_probs=57.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-------CCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-------NSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-------~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++.+|++|+.||+|++||++++..+..+..+.       ..|++++|+|+|++|++|+.|
T Consensus       248 h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  319 (380)
T 3iz6_a          248 HEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN  319 (380)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred             cCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC
Confidence            466799999999 99999999999999999999998887775432       248999999999999999988

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.26  E-value=2.9e-11  Score=94.52  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=61.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-------CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-------RFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-------~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++|+|+| ++++|++++.||+|++||+.+++.+..+.       +|...|.+++|+|+|++||+++.|    .|+
T Consensus       189 H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          189 HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            466799999999 99999999999999999999998887774       688999999999999999999998    476

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.26  E-value=9.3e-11  Score=86.89  Aligned_cols=65  Identities=25%  Similarity=0.448  Sum_probs=61.2

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .|++++|+| ++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|+|++|++++.|    .|+
T Consensus       125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence            489999999 99999999999999999999999999999999999999999999999999988    465

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.25  E-value=6.8e-11  Score=85.37  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCC-----CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQS-----RRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~-----~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++|+|+| ++ ++|++|+.|++|++||+..     +..+..+.+|...|++++|+|+|++|++|+.|    .|+
T Consensus        16 H~~~V~~l~~~~-~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           16 HNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CSSCEEEEEECS-SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccceEEEEEccC-CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            467799999999 65 8999999999999999864     23456788999999999999999999999988    576

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.25  E-value=6.8e-11  Score=84.49  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             CeecCeEEEEECCCC---CCEEEEEeCCCcEEEEeCCC-Ceee-EEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLS---RGAFVTGDNEGYVAAWDAQS-RRRL-FELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~---~~~~~t~s~Dg~I~iwD~~~-~~~~-~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++|+|+| +   +++|++|+.||.|++||+++ +..+ ..+..|..+|++++|+|++++|++++.|
T Consensus        37 ~h~~~v~~~~~~~-~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           37 SPDDSIGCLSFSP-PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             CCSSCEEEEEECC-TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCceEEEEEcC-CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            3567899999999 7   58999999999999999997 4444 6677899999999999999999999988

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.24  E-value=2.4e-11  Score=87.71  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECC--CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNH--GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.|++|++||++++.  .+..+.+|..+|.+++|+|  +|++||+++.|
T Consensus        12 H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A           12 HEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             --CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             ccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            467899999999 99999999999999999998764  4567889999999999986  48999999988

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.24  E-value=2.8e-11  Score=90.67  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=56.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee--EEecCCCCCeEEEEECC-CCCEEEEEeCC----Ccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL--FELPRFSNSVASLSYNH-GGQLLAVASSC----TYQ   82 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~--~~~~~~~~~v~~v~fsp-dg~~la~~s~d----~~~   82 (114)
                      ...|++|+|+|.++++|++|+.||.|++||+.++...  ..+.+|..+|++|+|+| ++.+|++++.|    .|+
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            3459999999944579999999999999999876543  34457999999999998 68999999988    465

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.24  E-value=8.8e-11  Score=85.63  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=58.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||++++   .++..+..|...|++++|+|++++||+++.|
T Consensus       104 h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A          104 HENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             CCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence            466799999999 9999999999999999999875   3455677899999999999999999999988

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.22  E-value=2.4e-10  Score=81.73  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL---PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~---~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+|.++++|++++.||.|++||+++++.+..+   ..+...|.+++|+|++.+|++++.|
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            46679999999955689999999999999999999988887   6789999999999999999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.22  E-value=5.3e-11  Score=93.97  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++|+|+| ++++|++|+.||.|++||+.++.....+.+|...|.+++|+|++++|++++.|    .|+
T Consensus       429 h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          429 HSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            467799999999 99999999999999999999999999999999999999999999999999988    576

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.22  E-value=1.4e-10  Score=85.58  Aligned_cols=65  Identities=15%  Similarity=0.386  Sum_probs=60.4

Q ss_pred             eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEe--cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFEL--PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~--~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++ ++|++++.||.|++||+++++.+..+  ..|...|++++|+|+|.+|++++.|
T Consensus       130 h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          130 HTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             CSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence            467899999999 86 79999999999999999999999888  7899999999999999999999988

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.22  E-value=1.4e-10  Score=90.68  Aligned_cols=68  Identities=25%  Similarity=0.395  Sum_probs=62.2

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      |..+|++++|+| ++. .|++|+.|++|++||..++++...+.+|...|++++|+|||++||+++.|    .|+
T Consensus       146 h~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          146 QARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            467899999999 775 79999999999999999988888899999999999999999999999998    465

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.21  E-value=1.6e-10  Score=91.52  Aligned_cols=65  Identities=15%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+++|+| ++.+|++++.||.|++||+.+++.+..+..|..+|++++|+|+|++||+++.|
T Consensus        12 h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A           12 RSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             ECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             CCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence            456799999999 99999999999999999999999999999999999999999999999999987

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.21  E-value=7.5e-11  Score=89.51  Aligned_cols=65  Identities=17%  Similarity=0.181  Sum_probs=58.9

Q ss_pred             eecCeEEEEECCCC-CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS-RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~-~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| + +++|++++.||.|++||++++..+.....|...|++++|+|+|++||+|+.|
T Consensus       148 h~~~V~~v~~~p-~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d  213 (434)
T 2oit_A          148 AGGMVIDMKWNP-TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN  213 (434)
T ss_dssp             GGGSEEEEEECS-SCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred             CCCceEEEEECC-CCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence            567899999999 6 7899999999999999999987766666788899999999999999999988

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=9.5e-11  Score=84.21  Aligned_cols=65  Identities=17%  Similarity=0.243  Sum_probs=58.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC--CCeeeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--SRRRLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--~~~~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++|+.||.|++||+.  +.+.+..+..|..+|++++|+|+  +.+|++++.|
T Consensus        10 h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A           10 HNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             CCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            456799999999 99999999999999999998  55666778899999999999987  9999999988

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.4e-10  Score=81.44  Aligned_cols=64  Identities=19%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++| | ++++|++++.||.|++||+.++.....+..+...|++++|+|++++|++++.|
T Consensus        17 h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   80 (313)
T 3odt_A           17 HDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD   80 (313)
T ss_dssp             CSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC
Confidence            4667999999 8 89999999999999999999998888888899999999999999999999988

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.20  E-value=2.2e-10  Score=87.47  Aligned_cols=66  Identities=21%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECC----------CCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNH----------GGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fsp----------dg~~la~~s~d   79 (114)
                      .|..+|++++|+| ++++|++++.||.|++||+.+++.+..+.. |..+|++++|+|          ++++||+++.|
T Consensus       486 ~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d  562 (615)
T 1pgu_A          486 PLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  562 (615)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             CccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence            3567899999999 999999999999999999999998888877 999999999999          99999999988

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.20  E-value=2.3e-10  Score=94.67  Aligned_cols=65  Identities=14%  Similarity=0.267  Sum_probs=62.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|++++|+|+|++||+++.|
T Consensus       614 h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          614 HTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCC
Confidence            567899999999 99999999999999999999999999999999999999999999999999988

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.20  E-value=1.1e-10  Score=85.74  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=60.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d   79 (114)
                      .|..+|++|+|+| ++++|++|+.||.|++||+++++.+..+..|...|++++|+|++. ++++++.|
T Consensus       137 ~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d  203 (357)
T 4g56_B          137 EHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED  203 (357)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETT
T ss_pred             CCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccC
Confidence            3567899999999 999999999999999999999999999999999999999999885 78888877

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.20  E-value=1.1e-10  Score=83.97  Aligned_cols=65  Identities=11%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++++.||.|++||+.+++  .+..+..|...|++++|+|++++|++++.|
T Consensus         7 ~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   73 (372)
T 1k8k_C            7 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD   73 (372)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC
Confidence            356799999999 99999999999999999999887  788888999999999999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.20  E-value=2.7e-10  Score=80.33  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=50.7

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++.|+|++ ++ +|++| .|++|++||+.+++++..+.  .|...|++++|+|+|++||+|+.|
T Consensus        28 ~~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D   88 (318)
T 4ggc_A           28 LNLVDWSS-GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS   88 (318)
T ss_dssp             CBCEEECT-TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEECC-CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC
Confidence            57799999 64 66665 59999999999998887665  567789999999999999999988

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.19  E-value=3.9e-10  Score=81.90  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             eecCeEEEEE-----CCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCCCEEEEEeCC--
Q 033677           14 HLVPVNDVVF-----SPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGGQLLAVASSC--   79 (114)
Q Consensus        14 ~~~~V~~v~f-----~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--   79 (114)
                      |..+|++|+|     +|.++.+|++|+.|++|++||+.+.       .....+.+|...|++++|+|++.+|++|+.|  
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~   99 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT   99 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred             chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence            4667999999     5536789999999999999999753       3456678999999999999999999999988  


Q ss_pred             --Ccc
Q 033677           80 --TYQ   82 (114)
Q Consensus        80 --~~~   82 (114)
                        .|+
T Consensus       100 v~lwd  104 (343)
T 2xzm_R          100 LRLWD  104 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence              465

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.19  E-value=2.8e-10  Score=81.37  Aligned_cols=65  Identities=9%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             eecCeEEEEECCCC----CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS----RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~----~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      +...|++++|+| +    +.+|++|+.||.|++||+.+++.+..+..|..+|++++|+| ++.+|++++.|
T Consensus        68 ~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d  137 (366)
T 3k26_A           68 ADENFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD  137 (366)
T ss_dssp             TTCCEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCcEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence            345699999999 7    56899999999999999999999999999999999999999 89999999987

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.19  E-value=2.8e-10  Score=83.95  Aligned_cols=67  Identities=18%  Similarity=0.383  Sum_probs=59.6

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      .|..+|++++|+|.++++|++|+.||.|++||+.++       +.+..+.+|...|++++|+|++ .+|++++.|
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            357789999999955689999999999999999987       5677788999999999999998 699999988

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.18  E-value=2.9e-10  Score=81.16  Aligned_cols=65  Identities=28%  Similarity=0.348  Sum_probs=56.8

Q ss_pred             eecCeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..+|++|+|+| +  +++|++|+.||+|++||+++++  .+..+..|...|.+++|+|+  |.+||+++.|
T Consensus        52 H~~~V~~v~~s~-~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           52 HEGPVWRVDWAH-PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             CSSCEEEEEECC-GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccCCeEEEEecC-CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence            567899999986 4  6899999999999999998763  45667788999999999998  8999999988

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.2e-10  Score=95.60  Aligned_cols=64  Identities=9%  Similarity=0.172  Sum_probs=57.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--------------------------------------------
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--------------------------------------------   49 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--------------------------------------------   49 (114)
                      |..+|++|+|+| ++.+|++|+.||+|++||+.+++                                            
T Consensus       487 h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          487 KELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            456899999999 99999999999999999997652                                            


Q ss_pred             -eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           50 -RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        50 -~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                       ++..+.+|..+|++|+||||| +||+|+.|
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D  595 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAA  595 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTS-EEEEEETT
T ss_pred             ceeEEEEcCCCcEEEEEecCCc-EEEEEeCC
Confidence             356677899999999999999 99999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.18  E-value=1e-10  Score=87.61  Aligned_cols=65  Identities=18%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFEL---PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~---~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++ .+|++|+.|+.|++||+++.+....+   ..|..+|++++|+|+|.+|++++.|
T Consensus       249 h~~~v~~v~~~p-~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D  317 (435)
T 4e54_B          249 HKKKVTHVALNP-CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK  317 (435)
T ss_dssp             CSSCEEEEEECT-TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred             ccceEEeeeecC-CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence            466899999999 66 58999999999999999886544333   4688999999999999999999988

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.17  E-value=2.9e-10  Score=83.91  Aligned_cols=70  Identities=13%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             CCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-----------eeEEecCCC------------CCeEEEE
Q 033677            9 KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-----------RLFELPRFS------------NSVASLS   65 (114)
Q Consensus         9 ~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-----------~~~~~~~~~------------~~v~~v~   65 (114)
                      .+..++..+|++|+|+| ++++|++|+.||.|++||+.++.           ....+.+|.            ..|++++
T Consensus        22 ~~~~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           22 DDDVAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             SSCCCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            34456778999999999 99999999999999999999776           466778887            8899999


Q ss_pred             ECCCC--CEEEEEeCC
Q 033677           66 YNHGG--QLLAVASSC   79 (114)
Q Consensus        66 fspdg--~~la~~s~d   79 (114)
                      |+|++  .+|++++.|
T Consensus       101 ~~~~~~~~~l~s~s~d  116 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTND  116 (447)
T ss_dssp             ECCCCSSSEEEEEECS
T ss_pred             EcCCCCcceEEEeCCC
Confidence            99998  789999888

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.17  E-value=3.8e-10  Score=82.10  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=60.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec------CC---------------CCCeEEEEECCCC--
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP------RF---------------SNSVASLSYNHGG--   70 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~------~~---------------~~~v~~v~fspdg--   70 (114)
                      |..+|.+++|+| ++++|++++.||.|++||+++++.+..+.      .+               ..+|++++|+|+|  
T Consensus       290 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~  368 (397)
T 1sq9_A          290 HSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR  368 (397)
T ss_dssp             BSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred             cCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence            567899999999 99999999999999999999999999888      77               8999999999998  


Q ss_pred             --------CEEEEEeCC
Q 033677           71 --------QLLAVASSC   79 (114)
Q Consensus        71 --------~~la~~s~d   79 (114)
                              ++|++++.|
T Consensus       369 ~~~~~~~~~~l~s~~~d  385 (397)
T 1sq9_A          369 SGMGADLNESLCCVCLD  385 (397)
T ss_dssp             BSTTCTTSCEEEEEETT
T ss_pred             ccccccccceEEEecCC
Confidence                    799999988

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.6e-10  Score=84.42  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      |..+|++++|+|.++.+|++++.||.|++||+++++.+..+..|...|++++|+|++ .+|++++.|
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence            567899999998556899999999999999999999999999999999999999999 899999888

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.17  E-value=4.1e-10  Score=83.40  Aligned_cols=66  Identities=20%  Similarity=0.232  Sum_probs=56.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC------------eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR------------RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~------------~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++|+|+| ++.+|++|+.||.|++||+++.            .+...+.+|...|.+++|+|++.+|++|+.|
T Consensus       254 ~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D  331 (393)
T 1erj_A          254 GHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD  331 (393)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred             CCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence            3567899999999 9999999999999999999763            3445667889999999999999999999988

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.17  E-value=5.7e-10  Score=81.39  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=56.6

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCC----CeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQS----RRRLFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~----~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      |..+|.+++|+| ++. +|++++.||.|++||+++    +..+..+ .+...|++++|+| +|++|++++.|
T Consensus       203 h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d  272 (383)
T 3ei3_B          203 HKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR  272 (383)
T ss_dssp             SSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS
T ss_pred             CCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC
Confidence            456799999999 887 999999999999999997    5555555 6889999999999 99999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.16  E-value=6.9e-10  Score=78.47  Aligned_cols=65  Identities=12%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+|++++|+| +++.|++++.||.|++||+++++.+..+..+...|++++|+|++++|++++.|
T Consensus       140 ~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          140 SAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             SSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            345699999999 99999999999999999999999898998999999999999999999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.16  E-value=3.9e-10  Score=82.05  Aligned_cols=64  Identities=25%  Similarity=0.356  Sum_probs=60.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecC-------------CCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPR-------------FSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~-------------~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..+|.+++|+| ++.+|++++.|   |.|++||+++++.+..+..             +...|++++|+|++++|++++.
T Consensus       233 ~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          233 SNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             CCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence            56799999999 99999999999   9999999999998888887             8999999999999999999998


Q ss_pred             C
Q 033677           79 C   79 (114)
Q Consensus        79 d   79 (114)
                      |
T Consensus       312 d  312 (397)
T 1sq9_A          312 D  312 (397)
T ss_dssp             T
T ss_pred             C
Confidence            8

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.16  E-value=2.1e-10  Score=82.73  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             eecCeEEEEECC-CCCCEEEEEeCCCcEEEEeCCCC--eeeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSP-LSRGAFVTGDNEGYVAAWDAQSR--RRLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p-~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..+|++|+|+| .++++|++|+.|++|++||++++  .....+.+|...|++++|+|+  |.+||+|+.|
T Consensus        56 H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D  126 (316)
T 3bg1_A           56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD  126 (316)
T ss_dssp             CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC
Confidence            466899999976 12689999999999999999886  355667789999999999998  7899999988

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.15  E-value=8.5e-11  Score=87.31  Aligned_cols=66  Identities=15%  Similarity=0.204  Sum_probs=58.2

Q ss_pred             eecCeEEEEECC-------CCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           14 HLVPVNDVVFSP-------LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p-------~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      |..+|++|+|+|       .++++|++||.|++|++||++++..+..+..+..+|.+++|+|++ .+|++++.|
T Consensus       135 H~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          135 HHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             CSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence            577899999976       246799999999999999999888888888899999999999987 489999988

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.15  E-value=4.4e-11  Score=86.87  Aligned_cols=66  Identities=18%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee----eEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR----LFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~----~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++++|+| ++++|++++.||.|++||+++++.    +..+..|..+|++++|+|+|++|++++.+
T Consensus       203 ~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          203 PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred             cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence            4567799999999 999999999999999999999877    67788899999999999999999998766

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.14  E-value=7.2e-10  Score=87.47  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-----eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-----RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-----~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      .|..+|++|+|+|.+.++|++|+.||.|++||+.+.     .....+.+|...|++++|+|+|++|++|+.|    .|+.
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            356779999999933479999999999999999763     3445678999999999999999999999988    5663

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.14  E-value=5.5e-10  Score=83.12  Aligned_cols=68  Identities=19%  Similarity=0.349  Sum_probs=59.8

Q ss_pred             cCeEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGD--NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA   84 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s--~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~   84 (114)
                      ..+..+.|.| ++..+++++  .||.|++||+.+++++..+.+|...|++++|+|||++||+|+.|    .|+..
T Consensus       321 ~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          321 SQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             SCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             cceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            4588999999 887776654  79999999999999999999999999999999999999999998    47643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.14  E-value=9.6e-11  Score=85.05  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=54.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++++.||.|++||++++.   ....+..|...|++++|+|++++|++++.|
T Consensus        54 h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           54 HDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             CSSCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS
T ss_pred             CCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecC
Confidence            567899999999 99999999999999999999876   566677899999999999999999999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.12  E-value=2.8e-10  Score=81.29  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=56.1

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCC-------------------eeeEEecCCCCCeEEEEECCCCCEE
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSR-------------------RRLFELPRFSNSVASLSYNHGGQLL   73 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~-------------------~~~~~~~~~~~~v~~v~fspdg~~l   73 (114)
                      |..+|++++|+| ++. +|++++.||.|++||++++                   +.+..+..|..+|++++|+|+|++|
T Consensus       258 ~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  336 (357)
T 3i2n_A          258 HKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL  336 (357)
T ss_dssp             CSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTE
T ss_pred             CcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeE
Confidence            466799999999 887 8999999999999999854                   3566677899999999999999988


Q ss_pred             E-EEeCC
Q 033677           74 A-VASSC   79 (114)
Q Consensus        74 a-~~s~d   79 (114)
                      + +++.|
T Consensus       337 ~~s~~~d  343 (357)
T 3i2n_A          337 CVCSSFD  343 (357)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            8 67777

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.12  E-value=1.4e-09  Score=76.90  Aligned_cols=65  Identities=12%  Similarity=0.160  Sum_probs=57.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+|.+++|+| +++.|++++.||.|++||+++++  ....+..+...|++++|+|++++|++++.|
T Consensus        96 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           96 RDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             TTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence            456799999999 99999999999999999999876  556677888999999999999999999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.12  E-value=1.1e-09  Score=79.84  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d   79 (114)
                      ..+|.+++|+| ++..|++++.||.|++||++ ++.+..+..|...|.+++|+|++. +|++++.|
T Consensus       163 ~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          163 DYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             SCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence            46799999999 99999999999999999994 667788889999999999999998 99999988

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.12  E-value=8.6e-10  Score=77.39  Aligned_cols=63  Identities=19%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++ .|++++.||.|++||+++++.+..+..+..+|++++|+|+|+++ +++.|
T Consensus       224 ~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d  286 (313)
T 3odt_A          224 HESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSD  286 (313)
T ss_dssp             CSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETT
T ss_pred             CCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCC
Confidence            456799999999 77 68999999999999999999999998898999999999999855 57766

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.11  E-value=1.7e-09  Score=77.77  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC------------------CCeeeEEecCCCCCeEEEEECCCCCEEEE
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ------------------SRRRLFELPRFSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~------------------~~~~~~~~~~~~~~v~~v~fspdg~~la~   75 (114)
                      |..+|++++|+| ++++|++++.||.|++||++                  .++.+..+..+...|++++|+|++++|++
T Consensus       141 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          141 IRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             CCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             cCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence            456799999999 99999999999999999954                  56777888889999999999999999999


Q ss_pred             EeCC
Q 033677           76 ASSC   79 (114)
Q Consensus        76 ~s~d   79 (114)
                      ++.|
T Consensus       220 ~~~d  223 (372)
T 1k8k_C          220 VSHD  223 (372)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            9988

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.6e-09  Score=78.74  Aligned_cols=64  Identities=19%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++++.||.|++|| .++..+..+..|..+|++++|+|++++|++++.|
T Consensus       107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (425)
T 1r5m_A          107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE  170 (425)
T ss_dssp             -CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecC
Confidence            466899999999 999999999999999999 5677788888999999999999999999999887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.10  E-value=4.4e-10  Score=81.70  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--------------------eeEEecCCCC--CeEEEEECCCCCE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--------------------RLFELPRFSN--SVASLSYNHGGQL   72 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--------------------~~~~~~~~~~--~v~~v~fspdg~~   72 (114)
                      ..+|.+++|+| ++++|++++.||.|++||++++.                    .+..+..+..  .|++++|+|+|++
T Consensus       330 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  408 (425)
T 1r5m_A          330 GVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK  408 (425)
T ss_dssp             TCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred             CccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence            45799999999 99999999999999999999877                    7888888866  9999999999999


Q ss_pred             EEEEeCC
Q 033677           73 LAVASSC   79 (114)
Q Consensus        73 la~~s~d   79 (114)
                      ||+++.|
T Consensus       409 l~~~~~d  415 (425)
T 1r5m_A          409 ISVAYSL  415 (425)
T ss_dssp             EEEEESS
T ss_pred             EEEEecC
Confidence            9999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.10  E-value=1e-09  Score=81.68  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=51.3

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +-++.|+|++ + ++|++|. |++|++||..++++...+.  .|...|++|+|+|+|++||+|+.|
T Consensus       106 ~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A          106 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence            3467799998 5 5777765 9999999999998776654  567789999999999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.10  E-value=1e-09  Score=78.83  Aligned_cols=65  Identities=29%  Similarity=0.351  Sum_probs=58.9

Q ss_pred             eecCeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..+|++++|+| +  +++|++++.||.|++||+++++  .+..+..+...|++++|+|+  +.+|++++.|
T Consensus        54 h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           54 HEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             CSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            467899999998 6  7999999999999999999886  66777789999999999999  9999999988

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.09  E-value=3.7e-10  Score=83.71  Aligned_cols=65  Identities=11%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEEC----CCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYN----HGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fs----pdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++.+|++|+.||.|++||+++++.+..+. .+..+|++++|+    |++.+|++++.|
T Consensus       213 h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d  282 (437)
T 3gre_A          213 RHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK  282 (437)
T ss_dssp             GGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred             CCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence            567899999999 99999999999999999999999888876 677799999555    568899999888

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.09  E-value=1.7e-09  Score=78.33  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-------------------------------------------
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-------------------------------------------   49 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-------------------------------------------   49 (114)
                      .|..+|++++|+| ++++|++++.||.|++||+++++                                           
T Consensus       243 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~  321 (408)
T 4a11_B          243 AHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV  321 (408)
T ss_dssp             SCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred             cccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence            4567899999999 99999999999999999987643                                           


Q ss_pred             ----eeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           50 ----RLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        50 ----~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                          .+..+..|..+|++++|+|+|.+|++++.|    .|+.
T Consensus       322 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          322 YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             cCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence                344556788999999999999999999988    4663

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.09  E-value=4.5e-10  Score=82.85  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             CeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..|+|+| +++++++  ++.|++|++||+++++++..+. +...|.+++|+|||++||+++.+
T Consensus       135 ~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~  197 (365)
T 4h5i_A          135 YTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS  197 (365)
T ss_dssp             CEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS
T ss_pred             CEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce
Confidence            377899999 9987764  4468999999999999888775 67789999999999999999876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.08  E-value=8.1e-10  Score=81.53  Aligned_cols=66  Identities=14%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             CeecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCee----eEEecCCCC------------CeEEEEECCCCCEEEE
Q 033677           13 HHLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRR----LFELPRFSN------------SVASLSYNHGGQLLAV   75 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~----~~~~~~~~~------------~v~~v~fspdg~~la~   75 (114)
                      .|..+|++++|+| ++ ++|++|+.||.|++||+++++.    +..+..+..            .|++++|+|+|++|++
T Consensus       224 ~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  302 (447)
T 3dw8_B          224 ELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT  302 (447)
T ss_dssp             GCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred             ccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence            3466799999999 87 8999999999999999999876    677777765            8999999999999998


Q ss_pred             EeCC
Q 033677           76 ASSC   79 (114)
Q Consensus        76 ~s~d   79 (114)
                      ++..
T Consensus       303 ~~~~  306 (447)
T 3dw8_B          303 RDYL  306 (447)
T ss_dssp             EESS
T ss_pred             eeCC
Confidence            8763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.08  E-value=2.7e-09  Score=78.22  Aligned_cols=61  Identities=15%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +....|+| ++++|++|+.||.|++||+++++....+..|...|++++|+|++++|++++.|
T Consensus       100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  160 (420)
T 3vl1_A          100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQD  160 (420)
T ss_dssp             EEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCC
Confidence            33446888 89999999999999999999998888778999999999999999999999988

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.08  E-value=1.2e-09  Score=78.00  Aligned_cols=64  Identities=13%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+++|+| ++++|++++.||.|++||+++++.+..+. +..+|.+++|+|++++|++++.+
T Consensus        73 h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B           73 HTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECC
T ss_pred             cCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCC
Confidence            466799999999 99999999999999999999999888776 78899999999999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.07  E-value=5e-10  Score=79.82  Aligned_cols=66  Identities=11%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSNSVASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~~v~~v~fspdg~-~la~~s~d   79 (114)
                      .|..+|++++|+| ++.+|++++.||.|++||+.++.   ....+..+...|++++|+|+++ +|++++.|
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d   78 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC
Confidence            4567899999999 99999999999999999998776   3445558889999999999999 99999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.07  E-value=2.4e-09  Score=77.61  Aligned_cols=64  Identities=14%  Similarity=0.042  Sum_probs=54.5

Q ss_pred             cCeEEEEECCC-CCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPL-SRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~-~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+|.+++|+|. ++++|++++.||.|++||+++++.+.... .+...|++++|+|+|.+||+|+.|
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            57999999982 35789999999999999999998866554 445689999999999999999988

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.07  E-value=2e-10  Score=89.54  Aligned_cols=65  Identities=11%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ   82 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~   82 (114)
                      .|++|+|+| ++..|++++.|++|++||++++.++..+.+|...|++|+|||+|.+||+|+.|    .|+
T Consensus       357 ~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          357 NLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             SCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             cccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            478899999 89999999999999999999998888888999999999999999999999988    566

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.07  E-value=3.8e-09  Score=75.00  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CeecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|...|..++|++ ++  .++++++.|+.|++||+++++.+..+.+|..+|++++|+|+|++||+|+.|
T Consensus       169 ~~~~~v~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  236 (340)
T 4aow_A          169 SHSEWVSCVRFSP-NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD  236 (340)
T ss_dssp             SCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccCcccceEEcc-CCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            3466789999988 54  578999999999999999999999999999999999999999999999988

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.07  E-value=9.4e-10  Score=87.04  Aligned_cols=65  Identities=9%  Similarity=0.198  Sum_probs=61.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+++|+| +++.|++++.||.|++||+.+++.+..+..|...|++++|+|+|.+|++++.|
T Consensus        54 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  118 (814)
T 3mkq_A           54 TETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD  118 (814)
T ss_dssp             CSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCC
Confidence            456799999999 99999999999999999999999999999999999999999999999999988

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.05  E-value=2.3e-09  Score=80.39  Aligned_cols=65  Identities=12%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             eecCeEEEEECCCCCCEE-EEEeCCCcEEEEeCC--CCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQ--SRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~--~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+|++++|+| ++..| ++++.||.|++||+.  +++.+..+.  .+...|++++|+|+|++|++++.+
T Consensus       101 ~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  170 (450)
T 2vdu_B          101 IYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF  170 (450)
T ss_dssp             CCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence            344799999999 88885 899999999999999  787777775  567889999999999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.3e-09  Score=86.47  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-----CeEEEEECCCCCEEEEEeCC----Cccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-----SVASLSYNHGGQLLAVASSC----TYQE   83 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-----~v~~v~fspdg~~la~~s~d----~~~~   83 (114)
                      ...|.+++|+| ++.+|++++.||.|++||.+.  ++..+. +..     .|.+++|||||++||+|+.|    .|+.
T Consensus        85 ~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           85 VCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             SCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred             CCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence            56799999999 999999999999999999654  555555 554     59999999999999999998    4763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.5e-09  Score=81.38  Aligned_cols=64  Identities=17%  Similarity=0.104  Sum_probs=58.2

Q ss_pred             eecCeEEEEECCCC---CCEEEEEeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS---RGAFVTGDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~---~~~~~t~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| +   +.+|++++.|+.|++||++++..+.. +.+|...|++++|+ +|++|++++.|
T Consensus       194 h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d  261 (450)
T 2vdu_B          194 HVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD  261 (450)
T ss_dssp             CSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred             ccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence            456799999999 8   88999999999999999999887777 45889999999999 99999999988

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.02  E-value=3.2e-09  Score=79.45  Aligned_cols=66  Identities=21%  Similarity=0.418  Sum_probs=57.5

Q ss_pred             CeecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d   79 (114)
                      .|..+|++|+|+| ++. +|++|+.||.|++||+++ ...+..+..|...|++++|+|++. +||+++.|
T Consensus       275 ~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          275 AHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             CCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             cCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC
Confidence            3456799999999 774 899999999999999998 566778888999999999999995 78888887

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.02  E-value=7e-09  Score=75.07  Aligned_cols=65  Identities=22%  Similarity=0.350  Sum_probs=55.2

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCe-eeEEe---------------cCCCCCeEEEEECCCCCEEEEE
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRR-RLFEL---------------PRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~-~~~~~---------------~~~~~~v~~v~fspdg~~la~~   76 (114)
                      |..+|++++|+| ++. +|++++.||.|++||+++.. .+..+               ..+...|++++|+|+|++|+++
T Consensus       185 ~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          185 HRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            466799999999 776 79999999999999998764 33333               4677899999999999999999


Q ss_pred             eCC
Q 033677           77 SSC   79 (114)
Q Consensus        77 s~d   79 (114)
                      +.|
T Consensus       264 ~~d  266 (408)
T 4a11_B          264 GTD  266 (408)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            988

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1e-09  Score=80.18  Aligned_cols=66  Identities=15%  Similarity=0.224  Sum_probs=59.4

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC----CeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS----RRRLFELPRFSNSVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~----~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d   79 (114)
                      .|..+|++++|+| ++.+|++++.||.|++||+.+    .+.+..+..|..+|++++|+|+ +.+|++++.|
T Consensus        65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  135 (416)
T 2pm9_A           65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN  135 (416)
T ss_dssp             CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS
T ss_pred             ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC
Confidence            4567899999999 999999999999999999987    4577778889999999999998 8999999887

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.02  E-value=1.5e-09  Score=77.45  Aligned_cols=65  Identities=14%  Similarity=0.331  Sum_probs=57.7

Q ss_pred             eecCeEEEEECCCC---CCEEEEEeCCCcEEEEeCCCCe-eeEEecCCCCCeEEEE------ECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS---RGAFVTGDNEGYVAAWDAQSRR-RLFELPRFSNSVASLS------YNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~---~~~~~t~s~Dg~I~iwD~~~~~-~~~~~~~~~~~v~~v~------fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| +   +.+|++++.||.|++||+++++ .+..+..|...|++++      |+|++++|++++.|
T Consensus        64 ~~~~v~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           64 KAKPIKCGTFGA-TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             ESSCEEEEECTT-CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             ccCcEEEEEEcC-CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            456899999999 7   5899999999999999999887 7888889999999994      57899999999988

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.01  E-value=5.1e-09  Score=79.83  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCC---CeEEEEECCC-CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSN---SVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~---~v~~v~fspd-g~~la~~s~d   79 (114)
                      |..+|++++|+| ++. +|++++.||.|++||+.+++.+..+..|..   .|++++|+|+ |++|++++.|
T Consensus       159 ~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          159 HSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            456799999999 776 899999999999999999999999998988   9999999999 9999999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.9e-09  Score=85.54  Aligned_cols=60  Identities=13%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee-------eEEe----cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR-------LFEL----PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~-------~~~~----~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|.+++|+| ++++|++|+.||+|++||+.++..       +..+    .+|...|.+++|+|||  +|+++.|
T Consensus       131 sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D  201 (588)
T 2j04_A          131 TYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN  201 (588)
T ss_dssp             CEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT
T ss_pred             cEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC
Confidence            589999999 999999999999999999998752       5665    5677899999999999  6667777

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.00  E-value=1.9e-09  Score=81.01  Aligned_cols=50  Identities=16%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-EEEECCCCCEEEEEeCC
Q 033677           30 AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-SLSYNHGGQLLAVASSC   79 (114)
Q Consensus        30 ~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-~v~fspdg~~la~~s~d   79 (114)
                      ++++++.||+|++||+.+++++.++.+|...+. .++|||||++||+|+.|
T Consensus       297 ~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D  347 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD  347 (356)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence            578999999999999999999999998877554 68999999999999988

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.99  E-value=1.4e-09  Score=87.23  Aligned_cols=65  Identities=17%  Similarity=0.243  Sum_probs=58.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC--CCeeeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--SRRRLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--~~~~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++|+.||.|++||+.  ++..+..+.+|..+|++++|+|+  |.+|++|+.|
T Consensus         8 H~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            8 HNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             CcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            456799999999 99999999999999999998  45667778899999999999998  9999999988

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.99  E-value=6e-09  Score=77.72  Aligned_cols=64  Identities=16%  Similarity=0.195  Sum_probs=58.9

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC--CCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN--HGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs--pdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++ .|++|+.||.|++||+++++.+..+..|..+|++++|+  +++.+|++++.|
T Consensus       161 h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d  226 (464)
T 3v7d_B          161 HDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD  226 (464)
T ss_dssp             CSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred             CCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence            567899999999 66 99999999999999999999999999999999999998  578899999988

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.97  E-value=9.9e-09  Score=76.74  Aligned_cols=67  Identities=22%  Similarity=0.354  Sum_probs=57.8

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQ-LLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d   79 (114)
                      .|..+|++++|+|..+.+|++++.||.|++||+++.   ..+..+..|...|++++|+|++. +||+|+.|
T Consensus       229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d  299 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD  299 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC
Confidence            356679999999944589999999999999999986   56667778999999999999987 78888887

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.97  E-value=5.5e-09  Score=77.13  Aligned_cols=63  Identities=22%  Similarity=0.343  Sum_probs=56.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s   77 (114)
                      |..+|.+++|+| ++.+|++|+.||.|++||+++++.+..+..+...|.+++|+|++ .++++++
T Consensus       216 ~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          216 HSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred             CCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence            456799999999 99999999999999999999999888888999999999999977 5666664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.94  E-value=7.8e-09  Score=82.89  Aligned_cols=65  Identities=29%  Similarity=0.351  Sum_probs=59.1

Q ss_pred             eecCeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHG--GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspd--g~~la~~s~d   79 (114)
                      |..+|++++|+| +  ++.|++|+.||.|++||++++.  .+..+..|..+|++++|+|+  |.+|++|+.|
T Consensus        52 h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           52 HEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             CSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            467899999998 7  8899999999999999999886  66777789999999999999  9999999988

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.94  E-value=8.2e-09  Score=76.93  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=63.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe-----cCCCCCeEEEEECCCCCEEEEEeCCCcccccccC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL-----PRFSNSVASLSYNHGGQLLAVASSCTYQEATVIE   88 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-----~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~   88 (114)
                      |..+|++++|++   ++|++|+.||.|++||+++++.+..+     ..+...|++++|+|+|.+||+|+.|.       .
T Consensus       361 ~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg-------~  430 (445)
T 2ovr_B          361 HQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG-------T  430 (445)
T ss_dssp             CSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS-------S
T ss_pred             CCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC-------C
Confidence            567899999987   69999999999999999999888777     36678899999999999999998873       1


Q ss_pred             CCCcEEEEEcCc
Q 033677           89 EPPQIFIIRIDD  100 (114)
Q Consensus        89 ~~~~i~i~~~~~  100 (114)
                      .+..|++-.++.
T Consensus       431 ~~~~l~v~df~~  442 (445)
T 2ovr_B          431 EETKLLVLDFDV  442 (445)
T ss_dssp             SCCEEEEEECCC
T ss_pred             CccEEEEEECCC
Confidence            234466655544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.93  E-value=1.4e-08  Score=84.04  Aligned_cols=65  Identities=22%  Similarity=0.260  Sum_probs=60.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC--CCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH--GGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d   79 (114)
                      |..+|.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|++++|+|  ++.++++|+.|
T Consensus       656 h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d  722 (1249)
T 3sfz_A          656 HEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND  722 (1249)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred             CCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence            467899999999 999999999999999999999999999999999999999999  45688999887

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.93  E-value=1.8e-08  Score=74.35  Aligned_cols=63  Identities=24%  Similarity=0.333  Sum_probs=58.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+  +++|++++.|
T Consensus       133 ~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  195 (401)
T 4aez_A          133 ESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRS  195 (401)
T ss_dssp             TTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCC
Confidence            456799999999 99999999999999999999999999999999999999994  6799999988

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.93  E-value=2.3e-09  Score=79.53  Aligned_cols=58  Identities=10%  Similarity=0.127  Sum_probs=48.3

Q ss_pred             EECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           22 VFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        22 ~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|+|.... ++++|+.||.|++||+.+++....+..+..+|++++|+|||++||+++.+
T Consensus       322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~  380 (393)
T 4gq1_A          322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG  380 (393)
T ss_dssp             EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred             EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            34441344 56678889999999999998888888888999999999999999999876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1.2e-08  Score=75.46  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=55.4

Q ss_pred             CeEEEE--ECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVV--FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~--f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+.++.  ++| ++.+|++++.||.|++||+++++.+..+..  |...|++++|+|++.+|++|+.|
T Consensus       170 ~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d  235 (437)
T 3gre_A          170 YAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR  235 (437)
T ss_dssp             CEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT
T ss_pred             CceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC
Confidence            355555  567 788999999999999999999999988887  78899999999999999999988

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.92  E-value=1.6e-08  Score=75.45  Aligned_cols=63  Identities=14%  Similarity=0.317  Sum_probs=58.5

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+++|+| +++.|++|+.||.|++||+++++.+..+..|...|.+++|+  +.+|++++.|
T Consensus       309 ~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d  371 (464)
T 3v7d_B          309 HTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD  371 (464)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETT
T ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC
Confidence            456799999999 99999999999999999999999999999999999999998  5799999988

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.90  E-value=5.8e-09  Score=81.26  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEecCCCCCeEEE--EECCCC-CEEEEEeCC----Cccc
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFELPRFSNSVASL--SYNHGG-QLLAVASSC----TYQE   83 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~~~~~~~v~~v--~fspdg-~~la~~s~d----~~~~   83 (114)
                      ..+|++++|+| + ..|++|+.||+|++||++++. ....+..|...|++|  +|+|+| .+||+++.|    .|+.
T Consensus       266 ~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~  340 (524)
T 2j04_B          266 DSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP  340 (524)
T ss_dssp             TTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred             CCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence            46799999998 6 489999999999999999764 345578899999999  678998 899999998    5763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=4.9e-09  Score=86.06  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----Eec-CCCCCeEEEEEC-----CCC---CEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-----ELP-RFSNSVASLSYN-----HGG---QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-----~~~-~~~~~v~~v~fs-----pdg---~~la~~s~d   79 (114)
                      |..+|++|+|+| ++ +|++|+.|++|++||++++..+.     .+. +|...|++|+|+     |||   .+||+|+.|
T Consensus       574 h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D  651 (902)
T 2oaj_A          574 NKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM  651 (902)
T ss_dssp             CSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred             CCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence            567899999999 99 99999999999999998877654     232 788889999999     886   899999998


Q ss_pred             ----Cccc
Q 033677           80 ----TYQE   83 (114)
Q Consensus        80 ----~~~~   83 (114)
                          .|+.
T Consensus       652 ~tv~~wd~  659 (902)
T 2oaj_A          652 GEVITYKI  659 (902)
T ss_dssp             SEEEEEEE
T ss_pred             CcEEEEEE
Confidence                5764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.79  E-value=8.4e-09  Score=78.21  Aligned_cols=64  Identities=16%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             ecCeEEEEECCCCCCEEE----EEeCCCcEEEEeCCCC--------ee---eEEecCCCCCeEEEEECCC-CCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFV----TGDNEGYVAAWDAQSR--------RR---LFELPRFSNSVASLSYNHG-GQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~----t~s~Dg~I~iwD~~~~--------~~---~~~~~~~~~~v~~v~fspd-g~~la~~s~   78 (114)
                      ..+|++++|+| ++++|+    +|+.|+.|++||+++.        +.   +..+.+|...|++++|+|+ +.+||+++.
T Consensus        92 ~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           92 KFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             SSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            34699999999 999988    7888999999998754        21   3344568889999999998 789999998


Q ss_pred             C
Q 033677           79 C   79 (114)
Q Consensus        79 d   79 (114)
                      |
T Consensus       171 D  171 (434)
T 2oit_A          171 D  171 (434)
T ss_dssp             T
T ss_pred             C
Confidence            8

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.72  E-value=2.4e-07  Score=69.38  Aligned_cols=62  Identities=15%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCC---cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEG---YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg---~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      |..+|.+++|+| +++.|++++.|+   .|++||+++++.. .+..+...+.+++|+|||+.||...
T Consensus       177 ~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~  241 (415)
T 2hqs_A          177 SPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFAL  241 (415)
T ss_dssp             ESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEE
Confidence            345799999999 999999999885   9999999988764 4566778899999999999888443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.71  E-value=1.3e-07  Score=69.18  Aligned_cols=65  Identities=9%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee--EEe--------------------c-CCCCCeEEEEECCCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL--FEL--------------------P-RFSNSVASLSYNHGG   70 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~--~~~--------------------~-~~~~~v~~v~fspdg   70 (114)
                      |..+|++++|+| ++++|++++.|+.|++||++.....  ..+                    . ....+...++|+|||
T Consensus       239 h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~  317 (355)
T 3vu4_A          239 DRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES  317 (355)
T ss_dssp             CCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence            567899999999 9999999999999999999765311  111                    0 112234679999999


Q ss_pred             CEEEEEeCC
Q 033677           71 QLLAVASSC   79 (114)
Q Consensus        71 ~~la~~s~d   79 (114)
                      ++|++++.|
T Consensus       318 ~~l~~~~~d  326 (355)
T 3vu4_A          318 SLVVVWPHT  326 (355)
T ss_dssp             EEEEEETTT
T ss_pred             CEEEEEeCC
Confidence            999999887

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.71  E-value=2.3e-07  Score=69.12  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=54.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+|+++++.   ++.|++|+.||.|++||+.+++....+.+|..+|++++|  ++++|++|+.|
T Consensus       132 ~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d  192 (435)
T 1p22_A          132 TSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD  192 (435)
T ss_dssp             SCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             CCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC
Confidence            45568887764   579999999999999999999999999999999999999  68899999988

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.70  E-value=3.3e-08  Score=74.23  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             eEEEEECC--CCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCC---CCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSP--LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS---NSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p--~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~---~~v~~v~fspdg~~la~~s   77 (114)
                      +..++|+|  .++.+|++++.|++|++||++++++++.+.++.   ..+.+++|+|+|.++++++
T Consensus       181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s  245 (356)
T 2w18_A          181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS  245 (356)
T ss_dssp             SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred             eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence            44444444  134678999999999999999999999997543   3677889999999886544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.68  E-value=1.2e-07  Score=69.82  Aligned_cols=62  Identities=13%  Similarity=0.070  Sum_probs=55.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...|++++|+| ++.++++++.|+.|++||+++++.+..+..+...+..++|+|+|+++++++
T Consensus       169 ~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          169 LGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             CCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred             CCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            44799999999 889999999999999999999988888888888999999999999886555

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.67  E-value=3.4e-07  Score=66.51  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             CeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+.+++|+| +++.+ ++++.|+.|++||+.+++.+..+..+. .+..++|+|+|++|+++..+
T Consensus        33 ~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~   94 (391)
T 1l0q_A           33 NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA   94 (391)
T ss_dssp             SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT
T ss_pred             CcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECC
Confidence            478999999 88765 778799999999999998887776544 89999999999988766543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.66  E-value=1.9e-07  Score=69.53  Aligned_cols=60  Identities=12%  Similarity=0.207  Sum_probs=46.6

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+|.+++|++   +.|++|+.||.|++||+++++++..+..|...|++++|  ++.+|++|+.|
T Consensus       296 ~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          296 KRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             SSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             CCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence            45577777754   57888888888888888888877778788888888887  57788888777

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.63  E-value=4.9e-07  Score=67.25  Aligned_cols=61  Identities=13%  Similarity=0.238  Sum_probs=43.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+++|++   +.|++|+.||.|++||+.+++.+..+..|...|.+++|+  +..|++|+.|
T Consensus       158 h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d  218 (445)
T 2ovr_B          158 HTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRD  218 (445)
T ss_dssp             CSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCC
Confidence            345677777765   477777777777777777777777777777777777774  4567777766

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.61  E-value=7.4e-07  Score=66.72  Aligned_cols=63  Identities=16%  Similarity=0.084  Sum_probs=51.5

Q ss_pred             ecCeEEEEECCCCCCEEE-EEeCCCc--EEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFV-TGDNEGY--VAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~-t~s~Dg~--I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+.+++|+| +++.|+ +++.||.  |.+||+++++. ..+..+...+..++|+|||++|++++.+
T Consensus       222 ~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~  287 (415)
T 2hqs_A          222 PRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQ  287 (415)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred             CCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECC
Confidence            34688999999 998776 7776664  99999998765 5566778889999999999999988753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.59  E-value=9.7e-07  Score=64.88  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEeC---------------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDN---------------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~---------------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+.+++|+| +++.|++++.               ||.|++||+.+++.+..+.. ...+..++|+|+|++|++++.
T Consensus       344 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          344 FDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             SSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred             CCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence            34588999999 9988877776               57999999999988877765 567899999999999988875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.56  E-value=4.8e-07  Score=62.23  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=51.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCC-CCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRF-SNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~-~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...|.+++|+| ++++|++++ ++.|.+||+.+ ++.......+ ...+..++|+|+|++|++++.
T Consensus        41 ~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           41 PELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             SSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEEC
T ss_pred             CcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEe
Confidence            45689999999 999988876 78999999998 7665545444 367889999999999998883

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.43  E-value=9.6e-07  Score=60.68  Aligned_cols=64  Identities=9%  Similarity=0.030  Sum_probs=51.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEe-CCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGD-NEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+..++|+| +++.|+.++ .++.+.+|+++ .+..+..+..+...+..++|+|+|++|++++.+
T Consensus       172 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          172 EGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence            35689999999 888776655 58999999886 455566677777789999999999999888765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.42  E-value=8.4e-07  Score=73.23  Aligned_cols=64  Identities=8%  Similarity=0.010  Sum_probs=56.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+..++|+| +++.|++++.++.|++||+.+++.......+...+..++|||||++||+++.+
T Consensus       378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence            45688999999 99999999999999999999988776666788889999999999999887653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.40  E-value=6.1e-06  Score=59.79  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             cCeEEEEECCCCCCEEEEEe---CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE-eCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGD---NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA-SSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s---~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~-s~d   79 (114)
                      ..+.+++|+| +++.|++++   .++.|++||+++++.+..+..+ ..+..++|+|+|++|+++ +.|
T Consensus       200 ~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          200 AAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             SEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred             CCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCC
Confidence            3578999999 998888877   6899999999999888777654 457899999999977544 444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.38  E-value=1.7e-06  Score=68.13  Aligned_cols=64  Identities=8%  Similarity=0.010  Sum_probs=52.1

Q ss_pred             ecCeEEEEECCCCCCEEEEEeC-CC-----cEEEEeCCCCeeeEEecCCCC------------------------CeEEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDN-EG-----YVAAWDAQSRRRLFELPRFSN------------------------SVASL   64 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~-Dg-----~I~iwD~~~~~~~~~~~~~~~------------------------~v~~v   64 (114)
                      ...|..++|+| +++.|++++. ||     .|.+||+.+++....+..+..                        .+..+
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            34689999999 9999999988 88     899999999876655543322                        27899


Q ss_pred             EECCCCCEEEEEeCC
Q 033677           65 SYNHGGQLLAVASSC   79 (114)
Q Consensus        65 ~fspdg~~la~~s~d   79 (114)
                      +|||||++|++++..
T Consensus       115 ~~SpDg~~l~~~~~~  129 (741)
T 2ecf_A          115 QWSPDAQRLLFPLGG  129 (741)
T ss_dssp             EECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEeCC
Confidence            999999999988753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.34  E-value=8.6e-06  Score=58.38  Aligned_cols=62  Identities=6%  Similarity=0.079  Sum_probs=48.0

Q ss_pred             CeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.| ++...++.|.+||+...   +.+..+..+...+..++|+|||++|+++..+
T Consensus       241 ~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          241 GAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             cceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence            477899999 99865 56667899999999732   4444455555668899999999998888765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.28  E-value=1.1e-05  Score=56.85  Aligned_cols=59  Identities=10%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.++++  ++.|.+||+.+++.+..+.. ...+..++|+|+|++|++++.+
T Consensus       242 ~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  300 (337)
T 1pby_B          242 FYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             CEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBS
T ss_pred             ceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCC
Confidence            466899999 99888887  79999999999887776653 3567899999999988887554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.23  E-value=1.3e-05  Score=56.97  Aligned_cols=74  Identities=23%  Similarity=0.344  Sum_probs=54.5

Q ss_pred             EEEEECCCCCCE-EEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEE
Q 033677           19 NDVVFSPLSRGA-FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIF   94 (114)
Q Consensus        19 ~~v~f~p~~~~~-~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~   94 (114)
                      ..++|+| +++. +++...++.|.+||..+++.+..+.. ...+..++|+|||++|+++.......+.+...+..|+
T Consensus       275 ~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~  349 (353)
T 3vgz_A          275 LAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVI  349 (353)
T ss_dssp             CCEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECCCBTTBCCSSCEEEE
T ss_pred             ceEEECC-CCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcccccccccccCCCcEE
Confidence            4689999 8874 55555789999999999988777654 4568999999999988877766555544433444444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.21  E-value=1.5e-05  Score=62.00  Aligned_cols=59  Identities=10%  Similarity=0.081  Sum_probs=52.0

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeC--CCCeeeEEecCCCCCeEEEEECC----CCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDA--QSRRRLFELPRFSNSVASLSYNH----GGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~--~~~~~~~~~~~~~~~v~~v~fsp----dg~~la~~s~   78 (114)
                      +..++|+| ++++|++++.|+.|.+||+  .+++.+..+. ....+..++|+|    ||+++++++.
T Consensus       181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            77899999 9999999999999999999  7888887776 455679999999    9999988874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.15  E-value=4.3e-06  Score=65.80  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=51.1

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..++|+| +++.|++++. +.|.+||+.++.  ....+..+...+..++|||||++||+++.+
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~  172 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR  172 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC
Confidence            378899999 9999988886 999999999872  344566677889999999999999988754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.15  E-value=1.3e-05  Score=56.43  Aligned_cols=62  Identities=24%  Similarity=0.192  Sum_probs=46.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC-CcEEEEeCC--CCe--eeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE-GYVAAWDAQ--SRR--RLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D-g~I~iwD~~--~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+..++|+| +++.|++++.+ +.|.+|++.  +++  .+..+... ..+..++|+|+|++|++++.
T Consensus        37 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           37 PGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEET
T ss_pred             CCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEec
Confidence            34577899999 99888777776 999999997  444  33334333 37889999999998877765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.15  E-value=9.3e-07  Score=69.31  Aligned_cols=60  Identities=5%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC---CeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN---SVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~---~v~~v~fspdg~~la~~s~d   79 (114)
                      +.+++|+| +++++++ +.||.|++||+.+++....+..+..   .|.+++|||||++||+++.+
T Consensus        19 ~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~   81 (723)
T 1xfd_A           19 DPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV   81 (723)
T ss_dssp             CCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred             ccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecC
Confidence            56889999 9887665 7899999999999887766665544   48999999999999998765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.14  E-value=5.8e-06  Score=63.71  Aligned_cols=59  Identities=12%  Similarity=-0.132  Sum_probs=49.4

Q ss_pred             EEEEECCCCCCEEEEEeCC----CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNE----GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~D----g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+++|+| +++.|+.++.|    +.|.+||+.+++.. .+..+...+..++|||||+.||++..+
T Consensus       153 ~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~  215 (582)
T 3o4h_A          153 FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETA  215 (582)
T ss_dssp             CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred             ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCC
Confidence            6889999 99999988777    78999999887744 566777889999999999999955544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.11  E-value=1.9e-05  Score=55.60  Aligned_cols=61  Identities=11%  Similarity=0.168  Sum_probs=45.2

Q ss_pred             CeEEEEECCCCCCEEE-EEeCCCcEEEEeCCC----CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFV-TGDNEGYVAAWDAQS----RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~-t~s~Dg~I~iwD~~~----~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.|+ ++..++.|.+||+..    .+.+..+..... +..++|+|+|++|++++.+
T Consensus       232 ~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          232 WAADIHITP-DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred             CccceEECC-CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence            466899999 887665 566799999999982    233444443333 8899999999988888743

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.11  E-value=5.3e-05  Score=54.60  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             CeEEEEECCCCCCEEEEEeC--CCcEEEEeCC--CCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDN--EGYVAAWDAQ--SRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~--Dg~I~iwD~~--~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.|+++..  ++.|.+|++.  +++  .+..+.. ...+..++|+|||++|+++..+
T Consensus       260 ~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          260 GSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             CEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred             CcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence            357999999 9987766555  4899999986  343  3333444 5577899999999999888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.09  E-value=2.4e-05  Score=55.34  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cCeEEEEECCCCCCE-EEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGA-FVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~-~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..+..++|+| +++. ++++..++.|.+||+.+++.   +..+.. ...+..++|+|||++|+++..
T Consensus       176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECS
T ss_pred             CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEc
Confidence            3468999999 8875 55566789999999998887   666653 456789999999997776654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.09  E-value=3.1e-05  Score=54.98  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=51.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC----CCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR----FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~----~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.|++++.++.|.+||..+++....+..    ....+..++|+|+|++++++..+
T Consensus       186 ~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          186 MSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             TCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             ccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence            367899999 999999999999999999999987776653    34567889999999987776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.07  E-value=8.2e-05  Score=53.57  Aligned_cols=62  Identities=10%  Similarity=0.079  Sum_probs=45.4

Q ss_pred             CeEEEEECCCCCCEEEEEe-CCCcEEEEeCCCCee--eEEec---CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGD-NEGYVAAWDAQSRRR--LFELP---RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~~~~~--~~~~~---~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.+++++ .++.|.+||+.+++.  +..+.   .....+..++|+|||++|+++..+
T Consensus       212 ~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          212 GPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             CCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            467899999 998776666 689999999987643  22222   233457899999999988766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.06  E-value=3.7e-06  Score=64.82  Aligned_cols=63  Identities=17%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEE--------ECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLS--------YNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~--------fspdg~~la~~s~d   79 (114)
                      ...+..++|+| +++.|+++..+|  .|++||+.+++.. .+..+...+..++        |+|||.++++++.+
T Consensus       194 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          194 EGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             SCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             CCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence            34578999999 999999888888  8999999988766 6666666666667        99999888888766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.01  E-value=4.2e-05  Score=60.62  Aligned_cols=83  Identities=11%  Similarity=0.166  Sum_probs=56.3

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcc---cc--c
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEG-----YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ---EA--T   85 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg-----~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~---~~--~   85 (114)
                      ..+..++|+| +++.|+.++.++     .|++||+.+++........ ..+..++|+|||+.|+.++.+.-.   .+  .
T Consensus       125 ~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            3578899999 999887765543     8999999998865432211 225679999999999988866320   01  1


Q ss_pred             ccCCCCcEEEEEcCc
Q 033677           86 VIEEPPQIFIIRIDD  100 (114)
Q Consensus        86 ~~~~~~~i~i~~~~~  100 (114)
                      +...+..||++.+..
T Consensus       203 ~~~~~~~v~~~~l~t  217 (710)
T 2xdw_A          203 STNLHQKLYYHVLGT  217 (710)
T ss_dssp             CCCCCCEEEEEETTS
T ss_pred             ccCCCCEEEEEECCC
Confidence            123345677777644

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.00  E-value=1.7e-05  Score=65.50  Aligned_cols=63  Identities=13%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCC----------cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEG----------YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg----------~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++..++|+| +++.|++++.++          .|++||+.+++ ...+..+...+..++|+|||++|++++.+
T Consensus       420 ~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          420 EAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             SSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             CCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence            44578999999 999888877654          99999999887 56667777788999999999999988864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.00  E-value=2.1e-05  Score=55.65  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CeEEEEECCCCCCE-EEEEeCCCcEEEEeCCCCeeeEEecCCC------CCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGA-FVTGDNEGYVAAWDAQSRRRLFELPRFS------NSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~-~~t~s~Dg~I~iwD~~~~~~~~~~~~~~------~~v~~v~fspdg~~la~~s~   78 (114)
                      .+..++|+| +++. +++...++.|.+||+.+++....+....      ..+..++|+|||++|+++..
T Consensus        44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             SSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence            467899999 8875 4566678999999999988776665322      23788999999999988874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.98  E-value=7.1e-06  Score=64.29  Aligned_cols=61  Identities=8%  Similarity=0.007  Sum_probs=48.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCC------------------eEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS------------------VASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~------------------v~~v~fspdg~~la~~s~   78 (114)
                      .+..++|+| +++.|+.++. +.|.+||+.+++.......+...                  +.+++|||||+.||+++.
T Consensus       115 ~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~  192 (723)
T 1xfd_A          115 KLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (723)
T ss_dssp             CCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence            377899999 9999888875 79999999988766555443333                  378999999999998875


Q ss_pred             C
Q 033677           79 C   79 (114)
Q Consensus        79 d   79 (114)
                      +
T Consensus       193 ~  193 (723)
T 1xfd_A          193 N  193 (723)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.96  E-value=1.2e-05  Score=63.34  Aligned_cols=61  Identities=13%  Similarity=0.129  Sum_probs=48.3

Q ss_pred             CeEEEEECCCCCCEEEEEeC---------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDN---------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~---------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.|+.++.         |+.|++||+.+++.+.. ......+..++|||||+.||++...
T Consensus        61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~~~  130 (719)
T 1z68_A           61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVYQN  130 (719)
T ss_dssp             TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEETT
T ss_pred             ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEECC
Confidence            378999999 9999988876         78999999998875211 1123568899999999999988644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.96  E-value=7.2e-05  Score=53.52  Aligned_cols=64  Identities=8%  Similarity=0.064  Sum_probs=43.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEe-CCCcEEEEeCCC-C--eeeEEecCC---------CCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGD-NEGYVAAWDAQS-R--RRLFELPRF---------SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~~-~--~~~~~~~~~---------~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+..|+|+| ++++|++++ .++.|.+||+.. +  ..+..+...         ...+..++|+|||+++++...+
T Consensus        85 ~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           85 GTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             SCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             CCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            34577899999 998777776 789999999963 2  222333211         1248899999999955554433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.94  E-value=2.8e-05  Score=55.01  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=46.0

Q ss_pred             CeEEEEECCCCCCEEEE-EeCCCcEEEEeCCCCee-eEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVT-GDNEGYVAAWDAQSRRR-LFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t-~s~Dg~I~iwD~~~~~~-~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++ .++|+| +++.+++ +..++.|.+||..+++. ...+.....+..+++|+|+|++|+++..+
T Consensus        42 ~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  104 (331)
T 3u4y_A           42 FV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGL  104 (331)
T ss_dssp             EE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred             cc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCC
Confidence            35 899999 8875555 44489999999999886 66665555665559999999988854433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.94  E-value=2.2e-05  Score=62.56  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             EEEEECCCCCCEEEEEeCC---------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNE---------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~D---------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++++|+| +++.|+.++.+         +.+.+||+.+++.. .+..+...+...+|||||+.||.+...
T Consensus        65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~  132 (740)
T 4a5s_A           65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNN  132 (740)
T ss_dssp             CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETT
T ss_pred             cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECC
Confidence            4589999 99998888876         66779999998754 455667789999999999999988643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.94  E-value=2.4e-05  Score=54.96  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCCCEEEEEe------------CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGD------------NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s------------~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.|++++            .++.|.+||+.+++.+..+.. ...+..++|+|+|++|++++.+
T Consensus        83 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T 1pby_B           83 SLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             CTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS
T ss_pred             cccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeCCe
Confidence            466899999 998888875            579999999999887766654 4567889999999988877544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.93  E-value=5.2e-05  Score=53.58  Aligned_cols=58  Identities=5%  Similarity=-0.068  Sum_probs=46.2

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCCEEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~~la~~s~   78 (114)
                      ++++.+ ++.++++++.++.|.+||..+++.+..+.... ..+..++|+|+|++++++..
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~   62 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN   62 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC
Confidence            456777 77889999999999999999998877775432 25789999999987665553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.92  E-value=2.1e-05  Score=61.23  Aligned_cols=55  Identities=18%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             ECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        23 f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |+| ++.++++++.|+.|.+||..+++++..+..... +..++|+|||++|++++.|
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d  199 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD  199 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETT
T ss_pred             cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCC
Confidence            788 888899999999999999999998888873333 8899999999999999887

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.91  E-value=4.7e-05  Score=59.64  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=45.9

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .+|.+++|+| + ..++.+. |+.|.+||+.+++... +..+...+..++|||||+.||++.
T Consensus        82 ~~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~  139 (706)
T 2z3z_A           82 FPSFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR  139 (706)
T ss_dssp             CCCEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE
T ss_pred             cCceeEEECC-C-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE
Confidence            5699999999 8 5555553 5999999999887544 445566788999999999999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.88  E-value=2.9e-05  Score=60.85  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             eEEEEECCCCCCEEEEEe---------------------------------CCCcEEEEeCCCCeeeEEec--CCCCCeE
Q 033677           18 VNDVVFSPLSRGAFVTGD---------------------------------NEGYVAAWDAQSRRRLFELP--RFSNSVA   62 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s---------------------------------~Dg~I~iwD~~~~~~~~~~~--~~~~~v~   62 (114)
                      +.+++|+| +++.|++++                                 .+..|.+||+.+++......  .+...+.
T Consensus       183 ~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  261 (706)
T 2z3z_A          183 EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT  261 (706)
T ss_dssp             CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred             CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence            57899999 999998887                                 44689999999887544332  3456789


Q ss_pred             EEEECCCCCEEEEEeCC
Q 033677           63 SLSYNHGGQLLAVASSC   79 (114)
Q Consensus        63 ~v~fspdg~~la~~s~d   79 (114)
                      .++|+|||+.|++++.+
T Consensus       262 ~~~~spdg~~l~~~~~~  278 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVN  278 (706)
T ss_dssp             EEEECTTSSEEEEEEEC
T ss_pred             eEEEECCCCEEEEEEeC
Confidence            99999999999887654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.87  E-value=0.00014  Score=51.63  Aligned_cols=62  Identities=11%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+.+++|.| ++++++++..++.|.+||..+++...........+..++|+|+|+++++...+
T Consensus        46 ~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~  107 (333)
T 2dg1_A           46 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD  107 (333)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred             cccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence            468899999 88888888889999999998876544333456789999999999988776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.85  E-value=4.2e-05  Score=60.55  Aligned_cols=82  Identities=10%  Similarity=-0.059  Sum_probs=53.6

Q ss_pred             cCeEEEEECCCCCCEEE-----EEeCCCcEEEEeCCCCeeeEEecCCCCC--eEEEEECCCCCEEEEEeCCCccccc--c
Q 033677           16 VPVNDVVFSPLSRGAFV-----TGDNEGYVAAWDAQSRRRLFELPRFSNS--VASLSYNHGGQLLAVASSCTYQEAT--V   86 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~-----t~s~Dg~I~iwD~~~~~~~~~~~~~~~~--v~~v~fspdg~~la~~s~d~~~~~~--~   86 (114)
                      ..+..++|+| ++++|+     .|+.+..|++||+.+++.+.  ..+...  ...++|+|||+.|+.++.|.-..+.  +
T Consensus       121 ~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          121 VSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4688999999 999887     44445789999999987541  111111  2679999999999988866321111  1


Q ss_pred             cCCCCcEEEEEcCc
Q 033677           87 IEEPPQIFIIRIDD  100 (114)
Q Consensus        87 ~~~~~~i~i~~~~~  100 (114)
                      ...+..||++.+..
T Consensus       198 ~~~~~~v~~~~l~t  211 (695)
T 2bkl_A          198 RPGYTTIRYHTLGT  211 (695)
T ss_dssp             GGGGCEEEEEETTS
T ss_pred             CCCCCEEEEEECCC
Confidence            12344566666643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.84  E-value=2e-05  Score=61.91  Aligned_cols=57  Identities=5%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC---CeEEEEECCCCCEEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN---SVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~---~v~~v~fspdg~~la~~s~   78 (114)
                      +++|+| +++ ++..+.|+.|++||+.+++....+..+..   .+.+++|||||++||+++.
T Consensus        20 ~~~~s~-dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~   79 (719)
T 1z68_A           20 FPNWIS-GQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESD   79 (719)
T ss_dssp             CCEESS-SSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEE
T ss_pred             ccEECC-CCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEec
Confidence            789999 885 55555799999999999887665543322   4889999999999998875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.79  E-value=7.4e-05  Score=53.94  Aligned_cols=58  Identities=9%  Similarity=0.011  Sum_probs=45.4

Q ss_pred             EEECCCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           21 VVFSPLSRGAFVTGDN-EG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        21 v~f~p~~~~~~~t~s~-Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+|+| +++.|+.++. +|  .|.+||+.+++.......+...+..+.|+|||+.|++++.+
T Consensus        41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            78999 9998888877 67  48888999887665555555555567899999999998865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.79  E-value=0.00045  Score=50.22  Aligned_cols=63  Identities=11%  Similarity=0.098  Sum_probs=46.9

Q ss_pred             cCeEEEEECCCCCCEEEEEe-CCCcEEEEeCC-CCeee--EEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGD-NEGYVAAWDAQ-SRRRL--FELP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~-~~~~~--~~~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+..++|+| +++.|+++. .++.|.+||+. +++..  ..+.  .+...+..++|+|||++|+++...
T Consensus       145 ~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence            3578999999 998777665 46799999998 66532  2232  235668999999999998877653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.75  E-value=2.9e-05  Score=60.38  Aligned_cols=63  Identities=19%  Similarity=0.122  Sum_probs=49.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC----------CcEEEEeCCC------CeeeEEec-CCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE----------GYVAAWDAQS------RRRLFELP-RFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D----------g~I~iwD~~~------~~~~~~~~-~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...+..++|+| +++.|+.++.|          ..|.+||+.+      ++ ...+. .+...+..++|||||++||.++
T Consensus       129 ~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          129 GLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             CEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEE
Confidence            44578999999 99999888876          5899999987      44 34455 5556778899999999999877


Q ss_pred             CC
Q 033677           78 SC   79 (114)
Q Consensus        78 ~d   79 (114)
                      .+
T Consensus       207 ~~  208 (662)
T 3azo_A          207 WD  208 (662)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.74  E-value=0.00014  Score=51.86  Aligned_cols=61  Identities=15%  Similarity=0.048  Sum_probs=45.7

Q ss_pred             cCeEEEEECCCCCCEEEEEeCC---C--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNE---G--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~D---g--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+..++|+| +++.|+..+.+   +  .|.+||+.+++....... .. +..++|+|||+.||+++.+
T Consensus        59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~  124 (347)
T 2gop_A           59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFK  124 (347)
T ss_dssp             ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEEC
T ss_pred             ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEcc
Confidence            4577899999 99888777654   3  477889888765544332 33 8999999999999888743

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.72  E-value=0.00056  Score=47.57  Aligned_cols=61  Identities=7%  Similarity=0.066  Sum_probs=45.9

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCeeeEEecCC--CCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEG-YVAAWDAQSRRRLFELPRF--SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg-~I~iwD~~~~~~~~~~~~~--~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+.+|++.| +++++++...++ .|.+||.. ++.+..+..+  ...+..++++|+|+++++ +.+
T Consensus       207 ~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~  270 (286)
T 1q7f_A          207 NYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKD  270 (286)
T ss_dssp             CSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred             CCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence            4578999999 899888888776 99999965 5555555433  234789999999987766 444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.71  E-value=0.0004  Score=49.91  Aligned_cols=64  Identities=11%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCC------------------------CcEEEEeCCCCeeeEEec-CCCCCeEEEEECCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNE------------------------GYVAAWDAQSRRRLFELP-RFSNSVASLSYNHG   69 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~D------------------------g~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspd   69 (114)
                      ...+.+|+++| +++++++...+                        +.|.+||..+++.+..+. .....+..++++|+
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            56799999999 99999888877                        479999999888766554 34457899999999


Q ss_pred             CCEEEEEeCC
Q 033677           70 GQLLAVASSC   79 (114)
Q Consensus        70 g~~la~~s~d   79 (114)
                      |+++++...+
T Consensus       102 g~l~v~d~~~  111 (329)
T 3fvz_A          102 GNYWVTDVAL  111 (329)
T ss_dssp             SCEEEEETTT
T ss_pred             CCEEEEECCC
Confidence            9987766544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.65  E-value=0.00017  Score=53.00  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCC--eeeEEecCCCCCeEEEEECCCCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR--RRLFELPRFSNSVASLSYNHGGQ   71 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~~~~~~v~~v~fspdg~   71 (114)
                      +.+|+|+| ++++|++++. +.|.+||..++  +.+..+.........++++|+|.
T Consensus       307 p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            67899999 9998888876 99999999999  88888767778889999999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.59  E-value=0.0002  Score=55.68  Aligned_cols=62  Identities=13%  Similarity=0.036  Sum_probs=46.2

Q ss_pred             CeEEEEECCCCCCEEEEEeCC--------CcEEEEeCC-CC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNE--------GYVAAWDAQ-SR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~D--------g~I~iwD~~-~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..++|+| +++.|+.++.+        ..|.+||+. ++   +.......+...+..++|+|||++++++..+
T Consensus       189 ~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~  262 (662)
T 3azo_A          189 FVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT  262 (662)
T ss_dssp             EECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT
T ss_pred             cccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC
Confidence            466789999 99988877654        379999998 56   3333333456789999999999976666554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.59  E-value=0.00021  Score=52.49  Aligned_cols=55  Identities=13%  Similarity=0.206  Sum_probs=44.1

Q ss_pred             EEECCCCCCEEEEEeC-----------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           21 VVFSPLSRGAFVTGDN-----------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        21 v~f~p~~~~~~~t~s~-----------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ++|+| ++..++++..           ++.|.+||+.+++.+..+....  +..++|+|||++|+++..
T Consensus       259 ~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          259 VGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             EEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred             EEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence            78999 8766655432           3489999999999998887665  899999999998887663

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.56  E-value=0.00065  Score=47.51  Aligned_cols=62  Identities=6%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..+++.+ +++++++...++.|.+||.++++.+..+......+.+++|+|+|+.|.+++..
T Consensus       227 ~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          227 GADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            367899999 89888888788999999998776666665555779999999999966666544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.54  E-value=0.00072  Score=53.50  Aligned_cols=61  Identities=5%  Similarity=0.026  Sum_probs=46.2

Q ss_pred             eEEEEECCCCCCEEEEEeCCCc----------------EEEEeCCCCee----eEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGY----------------VAAWDAQSRRR----LFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~----------------I~iwD~~~~~~----~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      +..++|+| +++.|+.++.++.                |.+|++.+++.    +.....+...+..+.|||||++|++++
T Consensus       173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            45799999 9998888887765                99999987652    222223445578999999999999877


Q ss_pred             CC
Q 033677           78 SC   79 (114)
Q Consensus        78 ~d   79 (114)
                      ..
T Consensus       252 ~~  253 (710)
T 2xdw_A          252 RE  253 (710)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.53  E-value=0.00038  Score=48.86  Aligned_cols=60  Identities=18%  Similarity=0.257  Sum_probs=49.4

Q ss_pred             cCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .-..+++|+| +++ +++++..++.|..||..++  ...+......+..++|+|+|+++++...
T Consensus        28 ~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~   88 (296)
T 3e5z_A           28 TWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHG   88 (296)
T ss_dssp             SSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETT
T ss_pred             ccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecC
Confidence            3467899999 887 7888888999999999877  5556666678999999999998876654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.51  E-value=0.00024  Score=51.68  Aligned_cols=62  Identities=13%  Similarity=0.092  Sum_probs=44.6

Q ss_pred             CeEEEE-ECCCCCCEEEEEeCC-C-----cEEEEeCC-CCeeeE---EecCCCCCeEEEEECC---CCCEEEEEeCC
Q 033677           17 PVNDVV-FSPLSRGAFVTGDNE-G-----YVAAWDAQ-SRRRLF---ELPRFSNSVASLSYNH---GGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~-f~p~~~~~~~t~s~D-g-----~I~iwD~~-~~~~~~---~~~~~~~~v~~v~fsp---dg~~la~~s~d   79 (114)
                      .+..++ |+| +++.|+++..+ .     .|.+||+. +++...   ........+..++|+|   ||++|+++..+
T Consensus       255 ~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          255 YRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            378899 999 99877665542 2     89999996 555332   1333444567899999   89999988765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.50  E-value=9.6e-05  Score=58.87  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-----CeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-----SVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-----~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+.|.| ++++|+++  ||.|++||+.++++...+..+..     ....++|||||++||+++.+
T Consensus        19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             ccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence            45799999 88888776  99999999999987766665532     22458999999999988763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.47  E-value=0.00018  Score=51.93  Aligned_cols=69  Identities=7%  Similarity=0.265  Sum_probs=47.8

Q ss_pred             EECCCCCCEEEEE---------eCCCcEEEEeCCCCeeeEEecCCCC-----------CeEEEEECCCCCEEEEEeCCCc
Q 033677           22 VFSPLSRGAFVTG---------DNEGYVAAWDAQSRRRLFELPRFSN-----------SVASLSYNHGGQLLAVASSCTY   81 (114)
Q Consensus        22 ~f~p~~~~~~~t~---------s~Dg~I~iwD~~~~~~~~~~~~~~~-----------~v~~v~fspdg~~la~~s~d~~   81 (114)
                      +|+| +++.|+..         ..+..|.+||+.+++. ..+..+..           .+..++|+|||+.|+.++..  
T Consensus       296 ~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~--  371 (388)
T 3pe7_A          296 LMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV--  371 (388)
T ss_dssp             EEEE-EECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT--
T ss_pred             eEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecC--
Confidence            6888 87766543         4567999999998764 34444443           57789999999999887744  


Q ss_pred             ccccccCCCCcEEEEEcCc
Q 033677           82 QEATVIEEPPQIFIIRIDD  100 (114)
Q Consensus        82 ~~~~~~~~~~~i~i~~~~~  100 (114)
                            .+...||+.++.+
T Consensus       372 ------~g~~~l~~~~l~~  384 (388)
T 3pe7_A          372 ------HGKPALYLATLPE  384 (388)
T ss_dssp             ------TSSCEEEEEECCG
T ss_pred             ------CCceeEEEEECCh
Confidence                  2346688877754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.47  E-value=0.001  Score=46.27  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC--CCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF--SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~--~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+.+|+++| +++++++...++.|.+||.. ++.+..+...  ...+..++++|+|+++++...+
T Consensus       164 ~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          164 EFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             SSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             CCcEEEEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence            4578999999 88888888889999999985 4455555433  3578999999999988877544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.44  E-value=0.0013  Score=49.65  Aligned_cols=61  Identities=15%  Similarity=0.046  Sum_probs=48.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEEe------c---CCCCCeEEEEECCCCCEEEEEe
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFEL------P---RFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~~------~---~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ....|.+++|+| ++  ++.|..||.+++|+....+.  ...+      .   ++...|.+|.|.+++.++++-.
T Consensus       161 ~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          161 LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            456799999999 77  67899999999999987775  4455      2   2567899999999998887544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.44  E-value=0.00085  Score=47.52  Aligned_cols=62  Identities=15%  Similarity=0.132  Sum_probs=50.9

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC-CCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN-HGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs-pdg~~la~~s~d   79 (114)
                      .+..+++.+ +++++++...++.|..||.++++.+..+......+++++|. |+++.|.+++..
T Consensus       200 ~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          200 IPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            357899999 89888888888899999999888887777666779999998 888877666654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.41  E-value=0.00042  Score=49.28  Aligned_cols=57  Identities=7%  Similarity=0.124  Sum_probs=43.4

Q ss_pred             eEEEEECCCCCCEEEEEeCC---------------------------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNE---------------------------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG   70 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~D---------------------------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg   70 (114)
                      +..++|+| +++.|+.++.+                           ..|.+||+.+++.+..+.. . .+..++|+|||
T Consensus       106 ~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg  182 (347)
T 2gop_A          106 IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK  182 (347)
T ss_dssp             EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE
T ss_pred             ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe
Confidence            78899999 99887776632                           5788999998876344444 3 78899999999


Q ss_pred             CEEEEEeC
Q 033677           71 QLLAVASS   78 (114)
Q Consensus        71 ~~la~~s~   78 (114)
                       +++++..
T Consensus       183 -~~~~~~~  189 (347)
T 2gop_A          183 -IVVNVPH  189 (347)
T ss_dssp             -EEEEEEC
T ss_pred             -EEEEEec
Confidence             7766644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.39  E-value=0.00042  Score=54.81  Aligned_cols=60  Identities=10%  Similarity=0.000  Sum_probs=46.9

Q ss_pred             EEEEECCCCCCEEEEEeCCCc-------------EEEEeCCCCe----eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNEGY-------------VAAWDAQSRR----RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~-------------I~iwD~~~~~----~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++|+| +++.|+.++.|..             |++|++.++.    .+.....+...+..+.|||||++|++++.+
T Consensus       171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence            6799999 9999988888776             9999998765    233333445678899999999988877644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.38  E-value=0.00028  Score=50.74  Aligned_cols=60  Identities=3%  Similarity=-0.051  Sum_probs=42.4

Q ss_pred             eEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCC-eEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNS-VASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~-v~~v~fspdg~~la~~s~d   79 (114)
                      +..++|+| +++.|+....+   ..|.+||+.+++... +...... ...+.|+|||+.||.++.+
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~  101 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVKNE  101 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEEcC
Confidence            56788999 99887666543   368888998887543 3333222 3347899999999988766

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.38  E-value=0.00046  Score=52.11  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=42.1

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +|.++.+.+ .  .|+++..||.|.+||+.++....    +...|++++|||+|  +++|..|
T Consensus       128 ~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          128 PVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             CEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             ceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            467777766 3  38889999999999999877543    34579999999999  5566666

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.37  E-value=0.0025  Score=43.57  Aligned_cols=63  Identities=11%  Similarity=0.006  Sum_probs=47.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+.+|++.| ++.++++...++.|.+||................+..++++|+|+++++...+
T Consensus       192 ~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          192 TAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             CSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             CCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence            4578999999 88888888888999999987654332222233568999999999977766554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.37  E-value=0.0024  Score=50.19  Aligned_cols=61  Identities=13%  Similarity=0.062  Sum_probs=49.6

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCC--CCeeeEEecCCCCCeEEEEEC----CCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--SRRRLFELPRFSNSVASLSYN----HGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--~~~~~~~~~~~~~~v~~v~fs----pdg~~la~~s~d   79 (114)
                      .+..+.|+| +++++++++.|+.|.+||+.  +++.+..+.. ......++|+    |||++++++...
T Consensus       198 ~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          198 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEcc
Confidence            456899999 99999999999999999996  7777776654 3346799999    699998887644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.25  E-value=0.0017  Score=45.96  Aligned_cols=61  Identities=10%  Similarity=0.110  Sum_probs=46.0

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC------CeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN------SVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~------~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..+++.+ +++++++...++.|.+||.+ ++.+..+.....      .+.+++|+|||..|++++.+
T Consensus       234 ~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          234 GPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEEEEBT-TCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCceEECC-CCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            467899999 89888888888999999984 555555543322      57899999998777666544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.17  E-value=0.0011  Score=47.09  Aligned_cols=48  Identities=17%  Similarity=0.250  Sum_probs=42.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCCEEEE
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQLLAV   75 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~~la~   75 (114)
                      +++|++++.|+.|.+||.++++.+.++..+. ..+..+.++|+|++|++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs   53 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS   53 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe
Confidence            5789999999999999999999998887654 46889999999999884

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.15  E-value=0.0016  Score=45.62  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=45.3

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE-CCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY-NHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f-spdg~~la~~s~d   79 (114)
                      +.++++.+ +++++++.  ++.|.+||.+ ++.+..+..... +++++| +|+++.|++++.+
T Consensus       220 p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          220 TDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             CCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred             CCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence            46799999 88877666  7899999987 666666665555 899999 6899988888766

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.05  E-value=0.0015  Score=52.04  Aligned_cols=81  Identities=9%  Similarity=0.045  Sum_probs=52.0

Q ss_pred             cCeEEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccc---ccc
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNE-----GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEA---TVI   87 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~D-----g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~---~~~   87 (114)
                      ..+..++|+| +++.|+.++.+     ..|++||+.+++.+.... ....+..++|+|| +.|+.++.+.-..+   .+.
T Consensus       163 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            3678899999 99988776554     359999999987654311 1111357899999 99998876531111   112


Q ss_pred             CCCCcEEEEEcC
Q 033677           88 EEPPQIFIIRID   99 (114)
Q Consensus        88 ~~~~~i~i~~~~   99 (114)
                      ..+..||++.+.
T Consensus       240 ~~~~~v~~~~lg  251 (741)
T 1yr2_A          240 NYNQTVWLHRLG  251 (741)
T ss_dssp             CCCCEEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence            334557777664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.04  E-value=0.0053  Score=43.96  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=47.8

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEe---------cCCCCCeEEEEECC-CCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFEL---------PRFSNSVASLSYNH-GGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~---------~~~~~~v~~v~fsp-dg~~la~~s   77 (114)
                      ...+.+|+++| +++++++...++.|.+||..... .+..+         ......+..|+|+| +|.++++.+
T Consensus        90 ~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           90 FYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred             cCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence            34678999999 99999999889999999986542 44444         23344688999999 788887765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.02  E-value=0.00097  Score=52.92  Aligned_cols=82  Identities=13%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             ecCeEEEEECCCCCCEEEE-----EeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCCCCEEEEEeCCCcccc--cc
Q 033677           15 LVPVNDVVFSPLSRGAFVT-----GDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHGGQLLAVASSCTYQEA--TV   86 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t-----~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspdg~~la~~s~d~~~~~--~~   86 (114)
                      ...+.+++|+| ++++|+-     |+.+..|++||+.+++.+.. +...  ....++|+ ||+.|+.++.+.-..+  .+
T Consensus       128 ~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          128 TTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             CCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             cEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccc
Confidence            34688899999 9987763     33335799999999875442 1111  12467999 9999998887632111  11


Q ss_pred             cCCCCcEEEEEcCc
Q 033677           87 IEEPPQIFIIRIDD  100 (114)
Q Consensus        87 ~~~~~~i~i~~~~~  100 (114)
                      ...+..||++.+..
T Consensus       204 ~~~~~~v~~~~lgt  217 (693)
T 3iuj_A          204 RTDQHKVYFHRLGT  217 (693)
T ss_dssp             -CCCCEEEEEETTS
T ss_pred             cCCCcEEEEEECCC
Confidence            24456688877644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.95  E-value=0.0019  Score=46.35  Aligned_cols=58  Identities=7%  Similarity=0.032  Sum_probs=40.0

Q ss_pred             CeEEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNE-----GYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~D-----g~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~   78 (114)
                      .+..++|+| +++.|+.++.+     +.|.+||+.+++...... ... .. +.|+| ||++++++..
T Consensus       239 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          239 SCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             EEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEEC
T ss_pred             cccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecC
Confidence            477889999 98866665443     349999998876433221 222 33 89999 9998887653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.91  E-value=0.0058  Score=48.64  Aligned_cols=59  Identities=14%  Similarity=0.162  Sum_probs=42.4

Q ss_pred             EEEEECCCCCCEEEEEeCCCc--------------EEEEeCCCCee----eEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNEGY--------------VAAWDAQSRRR----LFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~--------------I~iwD~~~~~~----~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++|+| + +.|+.++.|+.              |.+|++.++..    +.....+...+..+.|||||++|++.+.+
T Consensus       212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  288 (741)
T 1yr2_A          212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE  288 (741)
T ss_dssp             CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc
Confidence            4788999 8 88777776654              88999977642    22222333358899999999999887755

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.91  E-value=0.0056  Score=45.35  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=44.5

Q ss_pred             EEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCC-------CCCeEEEEECCCCCEEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRF-------SNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~-------~~~v~~v~fspdg~~la~~s~   78 (114)
                      .++++| +++.++.+.          .++.|.+||..+.+.+..+...       ......++|+|||++|+++..
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~  144 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEec
Confidence            899999 998887775          3678999999988777665422       123458999999999888763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.81  E-value=0.0057  Score=41.74  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=46.6

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+.+|++.| +++++++...++.|.+||................+..++++++|.++++...+
T Consensus       151 ~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          151 DPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             SCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             CceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCC
Confidence            567899999 88888888778899999988765443322333668899999999877665433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.76  E-value=0.014  Score=41.83  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC-CCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN-HGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs-pdg~~la~~s~d   79 (114)
                      +.++++.+ +++++++...++.|.+||. +++.+..+......+++++|+ |++..|.+++..
T Consensus       232 p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          232 MDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            56899999 8888887777789999998 466666666555679999998 898877666544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.65  E-value=0.03  Score=41.36  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=42.8

Q ss_pred             EEEECCCCCCEEEEEeC----------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEe
Q 033677           20 DVVFSPLSRGAFVTGDN----------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVAS   77 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~----------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s   77 (114)
                      .++++| ++..++.+..          ++.|.+.|..+++.+..+. .......++|+|||+ +++++.
T Consensus       271 ~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          271 QVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             eEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEc
Confidence            478899 8776666543          3579999999999888885 344678999999999 666654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.64  E-value=0.0021  Score=48.06  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=44.9

Q ss_pred             EEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCC-------CCCeEEEEECCCCCEEEEEe
Q 033677           20 DVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRF-------SNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~-------~~~v~~v~fspdg~~la~~s   77 (114)
                      .+.++| ++..++++.          .++.|.+||..+++.+.++...       ......++|+|||++++++.
T Consensus        69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan  142 (368)
T 1mda_H           69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence            799999 887766664          3679999999999988887532       12356899999999888775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.57  E-value=0.029  Score=38.38  Aligned_cols=60  Identities=12%  Similarity=0.171  Sum_probs=45.7

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+.+|++.| +++++++...++.|.+||.. ++... ........+..++++++|.++++..
T Consensus        15 ~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~   75 (299)
T 2z2n_A           15 TGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTEN   75 (299)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             CCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCC
Confidence            4589999999 88888877778899999988 54322 1223456789999999999877654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.52  E-value=0.0085  Score=43.06  Aligned_cols=61  Identities=10%  Similarity=-0.022  Sum_probs=46.5

Q ss_pred             eEEEEECCCCCCEEEEEeCC----------CcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNE----------GYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~D----------g~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+++.| ++++++++..+          +.|.+||..+++....+... ...+..++|+|+++.|.++...
T Consensus       174 p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~  245 (328)
T 3dsm_A          174 PTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINND  245 (328)
T ss_dssp             BCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSS
T ss_pred             ccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccE
Confidence            45788999 88877776654          78999999998877666422 3468899999999888776543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.49  E-value=0.035  Score=39.99  Aligned_cols=62  Identities=8%  Similarity=0.087  Sum_probs=46.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ....+++.+ +++++++...++.|.+||..+++....... ....++.++|.++|+++++.+..
T Consensus       249 ~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          249 ICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             SCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            356799999 899999999999999999855653322222 23458899999999887776643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.48  E-value=0.017  Score=40.88  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+.++.+.| ++++|+  +.++.|..||. +++.+.++... ...+.++.+.|+|+++++.+.
T Consensus        38 ~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~   96 (276)
T 3no2_A           38 ECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCG   96 (276)
T ss_dssp             CCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEES
T ss_pred             CCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecC
Confidence            477899999 999888  34778999999 78888888754 357889999999999988776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.47  E-value=0.036  Score=37.90  Aligned_cols=62  Identities=10%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..+.+|++.| ++.++++...++.|..||................+..+++.|+|.++++...
T Consensus        57 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  118 (299)
T 2z2n_A           57 AKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN  118 (299)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             CceeeEEECC-CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecC
Confidence            3578999999 8888888777889999998632212222234557899999999988776543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.40  E-value=0.011  Score=41.11  Aligned_cols=61  Identities=13%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             cCeEEEEECCCCCCEEEE-------EeCCCcEEEEeCCCCeeeEEecC-----CCCCeEEEEECCC-CCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGAFVT-------GDNEGYVAAWDAQSRRRLFELPR-----FSNSVASLSYNHG-GQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t-------~s~Dg~I~iwD~~~~~~~~~~~~-----~~~~v~~v~fspd-g~~la~~s~   78 (114)
                      ....+++|.+ ++.++++       ...++.|.+||..+++... +..     +...+..++++++ |+++++...
T Consensus        18 ~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~   91 (314)
T 1pjx_A           18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             CCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence            3467999999 8888877       5678899999988776432 222     3466899999999 876665543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.40  E-value=0.018  Score=42.97  Aligned_cols=61  Identities=5%  Similarity=-0.084  Sum_probs=46.9

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ......|+|+| +++++++...++.|++||..++........ ..... ++|+|+|+.|+++..
T Consensus       130 ~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~  190 (409)
T 3hrp_A          130 FKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGW  190 (409)
T ss_dssp             CCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBS
T ss_pred             cCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEec
Confidence            45678999999 888888888889999999998775544443 33334 999999998877765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.30  E-value=0.0051  Score=46.41  Aligned_cols=58  Identities=12%  Similarity=0.068  Sum_probs=44.1

Q ss_pred             EEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCC-------CCCeEEEEECCCCCEEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRF-------SNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~-------~~~v~~v~fspdg~~la~~s~   78 (114)
                      .++++| +++.++++.          .++.|.+||..+.+.+..+.-.       ......++|+|||+++.++..
T Consensus        82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~  156 (386)
T 3sjl_D           82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF  156 (386)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC
T ss_pred             cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc
Confidence            499999 987766654          3678999999999888776421       124567999999998887753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.23  E-value=0.015  Score=45.64  Aligned_cols=52  Identities=19%  Similarity=0.056  Sum_probs=42.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+.++++...++.|.++|..+++.+..+. ....+..+.|||||+++.+++.|
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~d  217 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRD  217 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETT
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCC
Confidence            34567788889999999999998887775 34467799999999998888766

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.07  E-value=0.1  Score=36.53  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=41.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC----CCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF----SNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~----~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+.++++.| +++++++.  ++.|.+||.++++........    ...++.++++|+|+++++..
T Consensus        54 ~~~~~i~~~~-dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~  116 (297)
T 3g4e_A           54 APVSSVALRQ-SGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTM  116 (297)
T ss_dssp             SCEEEEEEBT-TSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEE
T ss_pred             CceEEEEECC-CCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecC
Confidence            4588999999 88865543  567899999887643322211    23478899999999776543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.95  E-value=0.037  Score=39.00  Aligned_cols=59  Identities=7%  Similarity=-0.024  Sum_probs=44.4

Q ss_pred             CeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+..|.| +++ ++++...++.|..|+.. ++ ...+......+..++++++|+++++...
T Consensus        46 ~~egp~~~~-~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~  105 (305)
T 3dr2_A           46 WSEGPAWWE-AQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHG  105 (305)
T ss_dssp             SEEEEEEEG-GGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETT
T ss_pred             CccCCeEeC-CCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECC
Confidence            457889999 887 67788788999999984 43 3344445567899999999997765443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.93  E-value=0.045  Score=39.39  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=43.4

Q ss_pred             CeEEEEECCCCC-CEEEEEe---CCCcEEEEeCCCCeeeEEecCC-----------------------------CCCeEE
Q 033677           17 PVNDVVFSPLSR-GAFVTGD---NEGYVAAWDAQSRRRLFELPRF-----------------------------SNSVAS   63 (114)
Q Consensus        17 ~V~~v~f~p~~~-~~~~t~s---~Dg~I~iwD~~~~~~~~~~~~~-----------------------------~~~v~~   63 (114)
                      .+++|++.| ++ ..+++-.   .++.|.+||..+++....+..+                             ...+..
T Consensus       121 ~~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g  199 (343)
T 2qe8_A          121 FVNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG  199 (343)
T ss_dssp             CCCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred             ccceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence            358999998 54 4456655   5789999999877655444221                             123688


Q ss_pred             EEECCCCCEEEEEeCC
Q 033677           64 LSYNHGGQLLAVASSC   79 (114)
Q Consensus        64 v~fspdg~~la~~s~d   79 (114)
                      |+|+|||+.|.++...
T Consensus       200 ia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          200 IVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEECTTSCEEEEEESS
T ss_pred             eEeccCCCEEEEEeCC
Confidence            9999999988776543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.89  E-value=0.1  Score=35.55  Aligned_cols=60  Identities=10%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+.+|++.+ +++++++...++.|..||.. ++.. .........+..+++.++|.++++..
T Consensus        62 ~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  122 (300)
T 2qc5_A           62 AKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQL  122 (300)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             CcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEcc
Confidence            4578999999 88888887778899999988 5432 22222346789999999998777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.86  E-value=0.0085  Score=45.68  Aligned_cols=58  Identities=10%  Similarity=0.040  Sum_probs=44.7

Q ss_pred             EEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCC-------CCCeEEEEECCCCCEEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRF-------SNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~-------~~~v~~v~fspdg~~la~~s~   78 (114)
                      .++++| +++.++++.          .++.|.++|..+++.+..+.-.       ......+.|+|||+++.++..
T Consensus       122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF  196 (426)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred             ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec
Confidence            899999 887666654          3678999999999888776421       234567999999998888763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.73  E-value=0.13  Score=35.01  Aligned_cols=59  Identities=2%  Similarity=-0.032  Sum_probs=43.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .+.++++.+ +++++++....+.|.+||. +++... ........+..++++++|+++++..
T Consensus       189 ~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          189 APVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             CEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             CcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            478999999 8888887777788999998 444332 2333456788999999998766553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.71  E-value=0.15  Score=37.93  Aligned_cols=60  Identities=8%  Similarity=0.061  Sum_probs=45.1

Q ss_pred             cCeEEEEECCCCCCEEEEEe-CCCcEEEEeCCCCeeeEEecCC---------------CCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGD-NEGYVAAWDAQSRRRLFELPRF---------------SNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~~~~~~~~~~~~---------------~~~v~~v~fspdg~~la~~s   77 (114)
                      ....+|++.| +++++++-+ .++.|+.||..++.. ..+.+.               ......++++|+|.++++-.
T Consensus       323 ~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          323 AQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             SSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             CCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence            3478999999 899888887 889999999877763 333332               24588999999987666543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.69  E-value=0.028  Score=39.65  Aligned_cols=59  Identities=15%  Similarity=0.113  Sum_probs=41.0

Q ss_pred             CeEEEEECCCCCCEEEE----EeC-------------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVT----GDN-------------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t----~s~-------------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .++++++.| +++++++    |..             .+.|..||..+++.....  .....+.++|+|||+.|.++..
T Consensus       132 ~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~  207 (305)
T 3dr2_A          132 SPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQT  207 (305)
T ss_dssp             CCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEEC
T ss_pred             CCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEec
Confidence            467899999 9988886    332             256777887666543322  3345688999999997776654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.46  E-value=0.11  Score=37.18  Aligned_cols=56  Identities=9%  Similarity=0.063  Sum_probs=43.1

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      ...+++..  +.++++...++.|.+||..+++.+.++. ....+..++++++|+++++.
T Consensus        46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~  101 (328)
T 3dsm_A           46 AQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQ  101 (328)
T ss_dssp             EEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEE
T ss_pred             ceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEE
Confidence            56777754  4577777778999999999999888775 34668899999999655544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.98  E-value=0.023  Score=41.69  Aligned_cols=50  Identities=8%  Similarity=0.061  Sum_probs=33.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +.++++++.||.|+.||..+++.+.++..  .++.+..+.++|.++++++.|
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~d   58 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPND   58 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCC
Confidence            46899999999999999999998877765  445444455666666655444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.96  E-value=0.019  Score=46.22  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=40.1

Q ss_pred             CeEEEEEC-CCCCCEEEEEe-CCC----cEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFS-PLSRGAFVTGD-NEG----YVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~-p~~~~~~~t~s-~Dg----~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+...+|+ | ++++|+-+. .+|    .|+++|+.++ +.+..  ........++|+|||+.|+....+
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEEC
Confidence            56789999 9 998766433 233    4999999988 53211  001113468999999988877654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.96  E-value=0.35  Score=34.38  Aligned_cols=61  Identities=8%  Similarity=0.078  Sum_probs=41.7

Q ss_pred             cCeEEEEECCCCCCEE-EEEeCCCcEEEEeCC--CC-e-----eeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQ--SR-R-----RLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~--~~-~-----~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ...+.++|+| +++.| ++...++.|.+||+.  ++ .     .+..+......+..++++++|.++++..
T Consensus       179 ~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~  248 (326)
T 2ghs_A          179 SIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW  248 (326)
T ss_dssp             SSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             cccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence            3467899999 88755 555567899999986  55 2     1222222345577899999998776653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.89  E-value=0.18  Score=35.60  Aligned_cols=57  Identities=18%  Similarity=0.353  Sum_probs=43.0

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      ...+++|.| +++++++-..++.|..||..... ...+ .....+..+++.++|+++++.
T Consensus        33 ~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-~~~~-~~~~~p~gia~~~dG~l~vad   89 (306)
T 2p4o_A           33 FLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-QIHA-TVEGKVSGLAFTSNGDLVATG   89 (306)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-EEEE-ECSSEEEEEEECTTSCEEEEE
T ss_pred             CcceEEECC-CCCEEEEeCCCCeEEEECCCCce-EEEE-eCCCCceeEEEcCCCcEEEEe
Confidence            467899999 88888887788999999987643 2222 234568899999999976654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=94.57  E-value=0.12  Score=38.94  Aligned_cols=54  Identities=15%  Similarity=0.017  Sum_probs=42.0

Q ss_pred             EEECCCCCCEEEEEeC-----CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           21 VVFSPLSRGAFVTGDN-----EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        21 v~f~p~~~~~~~t~s~-----Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ....| +++.++....     ++.|.+.|..+++.+..+..-..+ . ++++|||+++.++.
T Consensus        38 ~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan   96 (386)
T 3sjl_D           38 EAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHAS   96 (386)
T ss_dssp             CCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEE
T ss_pred             eccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEc
Confidence            34568 7877777655     679999999999988888754455 4 99999999777665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=94.53  E-value=0.1  Score=38.80  Aligned_cols=55  Identities=7%  Similarity=-0.046  Sum_probs=38.7

Q ss_pred             EEECCCCCCEEEEEeC---------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCE-EEEEe
Q 033677           21 VVFSPLSRGAFVTGDN---------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQL-LAVAS   77 (114)
Q Consensus        21 v~f~p~~~~~~~t~s~---------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~-la~~s   77 (114)
                      ++|+| ++..++.+..         ++.+.++|+.+++.+..+.. ......++|+|||+. +++..
T Consensus       269 v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          269 VAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             EEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEE
T ss_pred             eEEcC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEEEcc
Confidence            78999 8876665432         23556999999988777653 235789999999984 44443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.29  E-value=0.2  Score=40.19  Aligned_cols=59  Identities=10%  Similarity=0.053  Sum_probs=38.9

Q ss_pred             EEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCee--eEEec-CCCCCeEEEEECCCCCEEEEEeC
Q 033677           19 NDVVFSPLSRGAFVTGDNE-----GYVAAWDAQSRRR--LFELP-RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~D-----g~I~iwD~~~~~~--~~~~~-~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..++|+| +++.|+....|     ..|.++++.++..  ...+. ....-...+.|||||++|+..+.
T Consensus       224 ~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~  290 (751)
T 2xe4_A          224 GEIVWGP-DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ  290 (751)
T ss_dssp             SCCEECS-STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred             eeEEEec-CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence            3688999 88766555554     2578888877532  12222 22234568899999999987764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.22  E-value=0.053  Score=43.29  Aligned_cols=56  Identities=21%  Similarity=0.414  Sum_probs=40.8

Q ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCC-EEEEEeC
Q 033677           22 VFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        22 ~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~-~la~~s~   78 (114)
                      .+.. .+.+++.++.||.|+.||.++++.+.+++.. .....-+.|..+|+ |+++.+.
T Consensus       481 ~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          481 TLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            3344 4678889999999999999999999888633 22234577788897 5565554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=93.96  E-value=0.16  Score=39.21  Aligned_cols=83  Identities=13%  Similarity=0.035  Sum_probs=51.0

Q ss_pred             CeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCC---eeeEEecCCC--------------CCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSR---RRLFELPRFS--------------NSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~---~~~~~~~~~~--------------~~v~~v~fspdg~~la~~s~   78 (114)
                      .+.+|.++| ++++|+++.. .+.|.+||+.+.   +.+..+....              .....++++|||++|.++.+
T Consensus       322 ~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          322 LVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             CCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             ceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            367899999 8877655544 789999998633   3333333210              13578999999998887764


Q ss_pred             C--Ccccc--cccCCCCcEEEEEcCcc
Q 033677           79 C--TYQEA--TVIEEPPQIFIIRIDDI  101 (114)
Q Consensus        79 d--~~~~~--~~~~~~~~i~i~~~~~~  101 (114)
                      -  .|+.-  .+ .....+|.+.+...
T Consensus       401 l~~~wd~Qfyp~-~~~~~~~~~~vd~~  426 (462)
T 2ece_A          401 LYSTWDNQFYPE-GLKGWMVKLNANPS  426 (462)
T ss_dssp             CCHHHHHHHSTT-CCCCEEEEEEECTT
T ss_pred             CcccccccccCC-CCceEEEEEEecCC
Confidence            2  45533  11 22344555544443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=93.94  E-value=0.64  Score=36.68  Aligned_cols=58  Identities=7%  Similarity=0.126  Sum_probs=38.0

Q ss_pred             EEEEECCCCCCEEEEEeCCC-------------cEEEEeCCCCee----eEEecC-CCCCeEEEEECCCCCEEEEEeC
Q 033677           19 NDVVFSPLSRGAFVTGDNEG-------------YVAAWDAQSRRR----LFELPR-FSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg-------------~I~iwD~~~~~~----~~~~~~-~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..++|+  +++.|+.++.+.             .|++|++.+...    +..... +...+..+.|||||++|++...
T Consensus       178 ~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          178 SGISWL--GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             CCCEEE--TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred             ccEEEe--CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence            356677  456666666653             499999987542    222223 3445788999999998877654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=93.85  E-value=0.64  Score=31.74  Aligned_cols=60  Identities=12%  Similarity=0.062  Sum_probs=40.5

Q ss_pred             eEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      +.+++++| ++ .++++-..++.|..+|...................++++|++..|..+..
T Consensus        38 ~~gi~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~   98 (267)
T 1npe_A           38 IIGLAFDC-VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEET-TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEEec-CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC
Confidence            46899998 65 45566666789999999865433333333356789999997665555443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.14  E-value=0.74  Score=34.51  Aligned_cols=61  Identities=13%  Similarity=0.153  Sum_probs=41.4

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ..+++++|.++.++++-..++.|..+|..++....... ........++|+|+|++|.++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            46788999345666676677899999998765422222 22234679999999996655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=92.95  E-value=0.12  Score=41.18  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCC-EEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~-~la~~s~   78 (114)
                      +..+.. .+.+++.++.||.+++||.++++.+..+.. .....+-+.|.++|+ ++++.+.
T Consensus       481 ~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G  540 (677)
T 1kb0_A          481 GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (677)
T ss_dssp             CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEecc
Confidence            334445 567888899999999999999999988863 233334567778886 4455444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.90  E-value=0.67  Score=32.78  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=41.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC---------CCCeEEEEECCCCCEEEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF---------SNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~---------~~~v~~v~fspdg~~la~   75 (114)
                      ...+.+|+++|..+++++.......+..+|.+.. .+..+...         -.+.-.|+|.++|+++.+
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence            3456899999955566666767788889997754 44433322         136789999999986654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=92.88  E-value=0.36  Score=36.67  Aligned_cols=49  Identities=16%  Similarity=-0.040  Sum_probs=37.2

Q ss_pred             CCCEEEEEeC-C----CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           27 SRGAFVTGDN-E----GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        27 ~~~~~~t~s~-D----g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ++..+++... +    +.|.++|..+++.+..+..-..+  .++++|||+.+.++.
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan  136 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQAS  136 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEe
Confidence            5555544443 3    79999999999999888755555  899999999777665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.87  E-value=0.56  Score=32.94  Aligned_cols=60  Identities=8%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE--EecCCCCCeEEEEEC---CCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF--ELPRFSNSVASLSYN---HGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~--~~~~~~~~v~~v~fs---pdg~~la~~s~d   79 (114)
                      ...+++.+ +++++++....+.|.++|.. ++...  .+......+++++|.   |++..|.+++..
T Consensus       214 P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          214 IDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            45688999 88887777778899999976 44322  233223568999998   898777666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=92.57  E-value=0.2  Score=39.83  Aligned_cols=62  Identities=11%  Similarity=0.058  Sum_probs=45.3

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCC----------CeeeEEecCCCCCe-----EEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS----------RRRLFELPRFSNSV-----ASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~----------~~~~~~~~~~~~~v-----~~v~fspdg~~la~~s~d   79 (114)
                      ....++|+| ++..+++.-.|+.|..||+.+          .+.+.++.-+..+-     ..++++|||++|.++..-
T Consensus       332 gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          332 GPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             CEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             CcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            467899999 886667777899999999987          45566665554432     123568999999887654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=92.38  E-value=0.38  Score=37.18  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             EEEECCCCCCEEEEEe-------------------CCCcEEEEeCCCCeeeEEecCC-C-CCeEEEEE--CCCCCEEEEE
Q 033677           20 DVVFSPLSRGAFVTGD-------------------NEGYVAAWDAQSRRRLFELPRF-S-NSVASLSY--NHGGQLLAVA   76 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s-------------------~Dg~I~iwD~~~~~~~~~~~~~-~-~~v~~v~f--spdg~~la~~   76 (114)
                      .+-|+| +++.+++..                   .+..|.+||+.+++.+.++... . .....+.|  +|+|+++.++
T Consensus       192 d~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~  270 (462)
T 2ece_A          192 DFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN  270 (462)
T ss_dssp             CEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred             eEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence            577899 888888874                   3679999999998877777642 1 23445656  9999988777


Q ss_pred             eC
Q 033677           77 SS   78 (114)
Q Consensus        77 s~   78 (114)
                      +.
T Consensus       271 ~e  272 (462)
T 2ece_A          271 MV  272 (462)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.97  E-value=1.4  Score=33.92  Aligned_cols=62  Identities=16%  Similarity=0.313  Sum_probs=43.9

Q ss_pred             ecCeEEEEECCCCC---CEEEEEeCCCcEEEEeCCCCe-eeEEec---------CCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSR---GAFVTGDNEGYVAAWDAQSRR-RLFELP---------RFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~---~~~~t~s~Dg~I~iwD~~~~~-~~~~~~---------~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+|..+-||| -+   ..|++-..|+.|++||+.... ....+.         .....|.+++|.++|-.|.+.+
T Consensus       124 ~s~I~qVlWHP-l~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          124 KSSIKKVLFHP-KSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             CCCEEEEEECT-TBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             CCceeEEEecc-ccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence            46799999999 64   489999999999999998521 001121         1226788999999886555433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=91.72  E-value=2.3  Score=30.23  Aligned_cols=57  Identities=11%  Similarity=-0.031  Sum_probs=38.1

Q ss_pred             eEEEEECCCCCCEEEEEeC--CCcEEEEeCCCCeeeEEecCCCC-CeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDN--EGYVAAWDAQSRRRLFELPRFSN-SVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~--Dg~I~iwD~~~~~~~~~~~~~~~-~v~~v~fspdg~~la~~s   77 (114)
                      ..+|.|+| ++.++++.+.  ++.|.+.|..+++.+..+..... -...+++.  |..|.++.
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t   82 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVV   82 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence            46899999 7766666554  57999999999998887652222 22345554  55555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=91.40  E-value=2.7  Score=29.59  Aligned_cols=59  Identities=12%  Similarity=0.283  Sum_probs=42.9

Q ss_pred             cCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEe
Q 033677           16 VPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        16 ~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+.+|+++| +++ ++++...++.|...|.. ++.+..++. -....-.|++.++|.++ ++.
T Consensus        27 ~~lSGla~~~-~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~-vs~   87 (255)
T 3qqz_A           27 NNISSLTWSA-QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFV-ISD   87 (255)
T ss_dssp             SCEEEEEEET-TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEE-EEE
T ss_pred             cCcceeEEeC-CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEE-EEE
Confidence            3588999999 665 55567778899999998 777777642 22457789999888644 444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=91.36  E-value=1.7  Score=30.98  Aligned_cols=63  Identities=8%  Similarity=0.094  Sum_probs=45.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC------------CCCeEEEEECCCCCEEEEEeCCCcc
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF------------SNSVASLSYNHGGQLLAVASSCTYQ   82 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~------------~~~v~~v~fspdg~~la~~s~d~~~   82 (114)
                      .+|.+.|.  ++.+++....+..|.+-|.++++.+..+...            ....+.|+|+|+++.|.+.+ -.|.
T Consensus       173 ~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG-K~Wp  247 (262)
T 3nol_A          173 ELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG-KLWP  247 (262)
T ss_dssp             CEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE-TTCS
T ss_pred             ccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC-CCCC
Confidence            35567765  4566666667889999999999988777531            23568999999988777665 4453

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=91.03  E-value=2.6  Score=28.62  Aligned_cols=61  Identities=16%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             cCeEEEEECCCCCCEE-EEEeC--CCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGAF-VTGDN--EGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~-~t~s~--Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+.++++| ++..| ++-..  .+.|..++++... ...+. ........++++|++..|.++..
T Consensus       122 ~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          122 VNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             SSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             CCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            3468999999 66554 44433  4688888876432 22222 22345789999998776655554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=90.15  E-value=1.8  Score=30.33  Aligned_cols=59  Identities=12%  Similarity=0.068  Sum_probs=38.9

Q ss_pred             CeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+.|+++| +++.| ++-..++.|.+||+....  ....+..... ...+++.++|.++++..
T Consensus       186 ~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          186 VPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             CCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             cCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            456899999 88754 454667899999987521  1112211233 78899999998766543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=89.81  E-value=1.5  Score=31.43  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL   54 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~   54 (114)
                      ..+|.|..  +.++.+.+.+|.|+++|+++++.+..+
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~   91 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME   91 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE
Confidence            35778875  468888999999999999999888776

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=89.74  E-value=3  Score=31.22  Aligned_cols=60  Identities=10%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             ecCeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           15 LVPVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        15 ~~~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      ......|++.| +  ...|+.+...+.|+.+|..++... .+......+..++|+++|.++++-
T Consensus       138 ~~~P~gvavd~-~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad  199 (433)
T 4hw6_A          138 FDNIWRMMFDP-NSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVD  199 (433)
T ss_dssp             CSCCCEEEECT-TTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEE
T ss_pred             cCCCceEEEcc-ccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEc
Confidence            34567999998 5  334444433389999999877644 344445568899999999955543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=89.45  E-value=1.4  Score=34.25  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCC-------CCee-----------eEEe-c-CCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-------SRRR-----------LFEL-P-RFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-------~~~~-----------~~~~-~-~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .+.++++|.++.++++-..++.|..+|+.       ++..           ...+ . ........|+|+|+|.+|.++.
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            46788999445677778788899999987       5543           1121 1 2223457999999999665554


Q ss_pred             C
Q 033677           78 S   78 (114)
Q Consensus        78 ~   78 (114)
                      .
T Consensus       329 ~  329 (496)
T 3kya_A          329 I  329 (496)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.43  E-value=1.8  Score=30.69  Aligned_cols=60  Identities=8%  Similarity=0.071  Sum_probs=44.8

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-------------CCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-------------SNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-------------~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++.+.|..  +.+++....++.|.+-|..+++.+..+...             ....+.|+|+|+++.|.++...
T Consensus       154 ~nele~~d--g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          154 LNELEYIN--GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             EEEEEEET--TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             ceeEEEEC--CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence            66777773  556666667889999999999988777531             1356899999999877766643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=89.01  E-value=0.82  Score=35.77  Aligned_cols=51  Identities=25%  Similarity=0.503  Sum_probs=37.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-CeEEEEECCCCC-EEEEEeC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-SVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-~v~~v~fspdg~-~la~~s~   78 (114)
                      +.+++.++.||.++.||.++++.+.+++.... ...-+.|..+|+ |+++.+.
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            46777899999999999999999988864322 122367778886 5666555

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=88.59  E-value=4.4  Score=32.26  Aligned_cols=64  Identities=11%  Similarity=0.108  Sum_probs=43.5

Q ss_pred             ecCeEEEEECCCCCCEEEEEeC------------CCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDN------------EGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~------------Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ....+.|.|.+ ++.++++-..            ...+..++..+++....+.. ....++.++|+||++.|.++...
T Consensus       475 fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH  551 (592)
T 4a9v_A          475 FNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH  551 (592)
T ss_dssp             CCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred             cCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence            55678999999 8988773211            11566667766764443332 24578999999999988776643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=88.40  E-value=1.6  Score=30.63  Aligned_cols=56  Identities=21%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--C------------------CCCCeEEEEECC-CCCEEEE
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--R------------------FSNSVASLSYNH-GGQLLAV   75 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~------------------~~~~v~~v~fsp-dg~~la~   75 (114)
                      ..++++.| ++++++++..++.|..||..++... .+.  .                  ....+..+++.+ +|+++++
T Consensus        21 p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           21 PNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCEECCT-TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             ceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            56789999 8887788888999999998765432 221  0                  013578999997 7765554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=88.27  E-value=2.6  Score=31.15  Aligned_cols=61  Identities=8%  Similarity=0.047  Sum_probs=43.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCC-CcEEEEeCCCCeeeEEec-C-----CCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNE-GYVAAWDAQSRRRLFELP-R-----FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~D-g~I~iwD~~~~~~~~~~~-~-----~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++++..+ +++..++++.. +.|...|..... +..+. .     ...-.+.|++.|+|.+|++....
T Consensus       138 ~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~  205 (334)
T 2p9w_A          138 GVVQSAQDR-DGNSYVAFALGMPAIARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP  205 (334)
T ss_dssp             EEEEEEECT-TSCEEEEEEESSCEEEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS
T ss_pred             CCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCC
Confidence            488999999 99999998888 888877776442 22221 1     11236799999999887776543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=88.26  E-value=3.4  Score=29.78  Aligned_cols=62  Identities=8%  Similarity=0.017  Sum_probs=39.7

Q ss_pred             cCeEEEEECCCCCCEEEEEeCC-CcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNE-GYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~D-g~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...++|+++|..+.++++-..+ +.|...+++... ...+ .......+.++|+|++..|..+..
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence            3468999999334556665555 788888887543 2223 223345789999987766655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=88.24  E-value=0.86  Score=36.23  Aligned_cols=41  Identities=12%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           38 GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        38 g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |.|..||+.+++.+.+++ +..++....+..+|.++++++.|
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~d  497 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTAD  497 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTT
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCC
Confidence            789999999999887765 33344455566677778777766

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.75  E-value=3.8  Score=30.01  Aligned_cols=62  Identities=10%  Similarity=0.027  Sum_probs=39.9

Q ss_pred             cCeEEEEECCCCC-CEEEEEeCC-CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSR-GAFVTGDNE-GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~-~~~~t~s~D-g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...++|++.| .+ .++++-..+ +.|...++................+.|+|+|++..|..+..
T Consensus       202 ~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          202 EKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             SCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred             CCCcEEEEEc-CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence            4468999998 55 455665555 78888888754332222333345789999987766655543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=87.29  E-value=2.3  Score=31.87  Aligned_cols=61  Identities=10%  Similarity=0.115  Sum_probs=39.5

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+.++++|.++.++++-..++.|..+|..++.....+.  ........++|+|+|+.|.++..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            46788898334666666667899999998776422222  11222347999999986655544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=86.55  E-value=4.4  Score=32.27  Aligned_cols=60  Identities=10%  Similarity=0.047  Sum_probs=45.8

Q ss_pred             eEEEEE-C-CCCCCEEEEEe------------------CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVF-S-PLSRGAFVTGD------------------NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f-~-p~~~~~~~t~s------------------~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      +..+++ . | +++++++++                  .++.+.+.|..+.+.+.++.--. ....++++|||+++.+.+
T Consensus       136 phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          136 IHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             EEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            567887 4 8 888877774                  24689999999998887776322 456788999999998888


Q ss_pred             CC
Q 033677           78 SC   79 (114)
Q Consensus        78 ~d   79 (114)
                      .+
T Consensus       214 ~~  215 (595)
T 1fwx_A          214 YN  215 (595)
T ss_dssp             SC
T ss_pred             cC
Confidence            55

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=86.51  E-value=6.7  Score=27.65  Aligned_cols=60  Identities=12%  Similarity=0.087  Sum_probs=37.9

Q ss_pred             CeEEEEECCCCCC-EEEEEeCC-CcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRG-AFVTGDNE-GYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~-~~~t~s~D-g~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+|++.| .+. ++++-... +.|...++.... ...+ .......+.++++|++..|..+..
T Consensus       121 ~P~~iavdp-~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          121 KPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             CEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CcceEEeCC-CCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence            467899998 554 55554443 788888876433 3323 223356789999988766655543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.39  E-value=3.2  Score=30.95  Aligned_cols=59  Identities=8%  Similarity=0.058  Sum_probs=39.8

Q ss_pred             CeEEEEECCCC-CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLS-RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~-~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ....|+++| . ...|+.+...+.|..+|+..+.... +.........++|+++|+.|.++.
T Consensus       138 ~P~~lavdp-~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad  197 (430)
T 3tc9_A          138 GAVWLSFDP-KNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITN  197 (430)
T ss_dssp             CCCEEEEET-TEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEECC-CCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEe
Confidence            457899997 4 2334444434889999998766433 334455688999999999555444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=86.13  E-value=1.5  Score=34.54  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCC-EEEEEeC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~-~la~~s~   78 (114)
                      +.+++.++.||.|+.||.++++.+.+++... ....-+.|..+|+ |+++.+.
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            4677779999999999999999998876322 2223356667886 5666555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=86.13  E-value=1.6  Score=34.04  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCCEEE
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQLLA   74 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~~la   74 (114)
                      +.+++.++.||.|+.||.++++.+.+++... ..-.-+.|..+|++++
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            4677778999999999999999988776322 1122344667887544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=85.72  E-value=3.2  Score=30.65  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=43.1

Q ss_pred             ecCeEEEEECCCCCCEEEE-EeCCCcEEEEeCCC-Cee--eEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVT-GDNEGYVAAWDAQS-RRR--LFELPRFSNSVASLSYNH-GGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t-~s~Dg~I~iwD~~~-~~~--~~~~~~~~~~v~~v~fsp-dg~~la~~s~d   79 (114)
                      ..-.|+|+|+| +++.|+. -+..+.|..||+.. ++.  ...+ ......-.+++.+ +|.+.+++.-+
T Consensus       220 l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          220 FDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            45678999999 8866554 45578999999863 321  1223 3355677899999 59987766434

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=85.52  E-value=1.3  Score=31.29  Aligned_cols=55  Identities=15%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee------EEe-cCCCCCeEEEEECCCCCEEEEE
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL------FEL-PRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~------~~~-~~~~~~v~~v~fspdg~~la~~   76 (114)
                      .++.|.| ++.+.++  .||.|..++--+....      ..+ ..-=..+..|.|.|+|.+.|+.
T Consensus        91 ~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           91 QFLFFDP-NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             SEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             eEEEECC-CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            6889999 8887777  5699988875221111      011 1111467899999999999988

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=85.36  E-value=2.1  Score=31.67  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=39.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEe-----------------CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           15 LVPVNDVVFSPLSRGAFVTGD-----------------NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s-----------------~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ....|++.+.+ ++.++++..                 ..|.|..+|..  + +..+...-...+.++|||||+.|.++.
T Consensus       164 ~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvad  239 (355)
T 3sre_A          164 LPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAE  239 (355)
T ss_dssp             CSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEe
Confidence            45678999999 887666654                 12456666653  2 222222234468999999998887766


Q ss_pred             CC
Q 033677           78 SC   79 (114)
Q Consensus        78 ~d   79 (114)
                      +.
T Consensus       240 t~  241 (355)
T 3sre_A          240 LL  241 (355)
T ss_dssp             GG
T ss_pred             CC
Confidence            53

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=85.35  E-value=7  Score=27.39  Aligned_cols=63  Identities=10%  Similarity=0.098  Sum_probs=44.1

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-------------CCCCeEEEEECCCCCEEEEEeCCCcc
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-------------FSNSVASLSYNHGGQLLAVASSCTYQ   82 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-------------~~~~v~~v~fspdg~~la~~s~d~~~   82 (114)
                      .+|.+.+.  ++.+++....+..|.+-|.++++.+..+..             .....+.|+|+|+++.|.+.+ -.|.
T Consensus       151 ~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG-K~wp  226 (243)
T 3mbr_X          151 NLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG-KRWP  226 (243)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE-TTCS
T ss_pred             cceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC-CCCC
Confidence            45666655  355666666678999999999998877641             123568999999887776665 3453

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=85.27  E-value=1.4  Score=35.03  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           37 EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        37 Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +|.|..||+.+++.+.+++.. .++....+...|.++++++.|
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~d  495 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSAD  495 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTT
T ss_pred             ceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCC
Confidence            378999999999988776533 333334556667788888877

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=85.03  E-value=1.4  Score=34.91  Aligned_cols=52  Identities=17%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-CeEEEEECCCCC-EEEEEeC
Q 033677           27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-SVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-~v~~v~fspdg~-~la~~s~   78 (114)
                      .+.+++.++.||.++.||.++++.+..++.... .-.-+.+..+|+ ++++++.
T Consensus       468 ~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence            356888899999999999999998887764321 112344556776 5666554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.85  E-value=1.9  Score=35.79  Aligned_cols=38  Identities=8%  Similarity=0.086  Sum_probs=32.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL   54 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~   54 (114)
                      ..+.+++..+ +...+++-+.|+++++|++.+++++...
T Consensus       236 ~~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3467777777 7789999999999999999999888765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=84.44  E-value=7.9  Score=27.51  Aligned_cols=56  Identities=7%  Similarity=0.005  Sum_probs=35.6

Q ss_pred             EEEEECCCCCCEEEEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           19 NDVVFSPLSRGAFVTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      .+|.|+.  +.++.+.+.+|  .|+++|+++++.+..+... .........+++..|....
T Consensus        46 qGL~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~lt  103 (262)
T 3nol_A           46 EGFFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLT  103 (262)
T ss_dssp             EEEEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEE
T ss_pred             ceEEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEE
Confidence            5677774  46777877776  9999999999988877533 2332222223344554443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=84.23  E-value=7.9  Score=27.66  Aligned_cols=63  Identities=6%  Similarity=0.031  Sum_probs=44.3

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-------------CCCeEEEEECCCCCEEEEEeCCCcc
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-------------SNSVASLSYNHGGQLLAVASSCTYQ   82 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-------------~~~v~~v~fspdg~~la~~s~d~~~   82 (114)
                      .+|.+.|.  ++.+++....+..|.+-|.++++.+..+...             ....+.|+|+|+++.|.+.. -.|.
T Consensus       182 ~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG-K~Wp  257 (268)
T 3nok_A          182 LINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG-KLWP  257 (268)
T ss_dssp             CEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE-TTCS
T ss_pred             cccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC-CCCC
Confidence            45677776  4566666667889999999999988776421             24678999999876555443 4453

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.95  E-value=0.86  Score=32.18  Aligned_cols=55  Identities=13%  Similarity=0.064  Sum_probs=35.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCC--------eEEEEECCCCCEEEE
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS--------VASLSYNHGGQLLAV   75 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~--------v~~v~fspdg~~la~   75 (114)
                      .+..++|+| ++.+.+.  .+|.+...+..+..... +......        ..++.|.|+|.+.|+
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe
Confidence            577999999 9887777  67777766654421110 1111111        368999999998887

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.53  E-value=11  Score=27.64  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEEec----CCCCCeEEEEECCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFELP----RFSNSVASLSYNHG   69 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~~~----~~~~~v~~v~fspd   69 (114)
                      .....|+|.| ++.+|++--..|.|.+++..+++.  +..+.    ........|+|+|+
T Consensus        32 ~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           32 NSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            3467899999 998888876689999998765543  21121    12446789999995

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=82.53  E-value=12  Score=27.41  Aligned_cols=62  Identities=8%  Similarity=-0.085  Sum_probs=39.5

Q ss_pred             cCeEEEEECCCCC-CEEEEEeC-CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSR-GAFVTGDN-EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~-~~~~t~s~-Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ....+|+++| .+ .++++-.. .+.|...++............-...+.|+++|++..|..+..
T Consensus       202 ~~P~~iavdp-~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          202 SKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             CCEEEEEEET-TTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCcceEEEec-ccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            3467899999 55 45555433 478888888754333333333356789999987776665543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=82.36  E-value=9.5  Score=26.86  Aligned_cols=60  Identities=8%  Similarity=0.043  Sum_probs=38.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      ...+|++.+..++++++-..++.|.+.|.........+.........+++.|.+..|..+
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~  137 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  137 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEE
Confidence            457889987234556666678899999987544332333334567899999865544433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=82.35  E-value=3.5  Score=29.83  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-EEEECCCCCE
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-SLSYNHGGQL   72 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-~v~fspdg~~   72 (114)
                      ..+++++.||.|..||.++++.+..+. ...++. ...++++|.+
T Consensus       174 ~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          174 MSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCE
T ss_pred             ceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceE
Confidence            467778899999999999998877665 344554 4566778864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=82.22  E-value=5.7  Score=28.69  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=34.9

Q ss_pred             cCeEEEEECCCC---CCEE-EEEeCC-----CcEEEEeCCCC-----eeeE-EecC---CCCCeEEEEECCCCCEEEE
Q 033677           16 VPVNDVVFSPLS---RGAF-VTGDNE-----GYVAAWDAQSR-----RRLF-ELPR---FSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        16 ~~V~~v~f~p~~---~~~~-~t~s~D-----g~I~iwD~~~~-----~~~~-~~~~---~~~~v~~v~fspdg~~la~   75 (114)
                      ...+.|+|+| +   +..| ++-..+     +.|..|+....     +.+. .+..   .......++|.|||.++++
T Consensus        75 ~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           75 SGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             CSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             CCceeEEECC-CCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            3578999999 7   4444 443322     57788887643     1121 2331   1123468999999975554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=82.16  E-value=14  Score=27.94  Aligned_cols=53  Identities=13%  Similarity=0.330  Sum_probs=35.2

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEEecC------CCCCeEEEEECCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFELPR------FSNSVASLSYNHG   69 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~~~~------~~~~v~~v~fspd   69 (114)
                      ....+|+|.| ++++|++-...+.|.+++..++..  +..+..      ....+..|+|+|+
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            3467999999 998877765555788887655532  222221      1345679999994

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=82.08  E-value=10  Score=30.06  Aligned_cols=60  Identities=12%  Similarity=0.133  Sum_probs=39.5

Q ss_pred             CeEEEEECCCCCCEEEEEeCC------------CcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEe
Q 033677           17 PVNDVVFSPLSRGAFVTGDNE------------GYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~D------------g~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..-.|+|.| .+++++.-..+            ..+.+.+..+++..+-+. .....++.++|+||++.|.+..
T Consensus       477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            345799999 88876664322            134445666665433333 3457899999999999887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=82.01  E-value=13  Score=27.36  Aligned_cols=80  Identities=13%  Similarity=0.304  Sum_probs=47.1

Q ss_pred             EEEEECCCCCCEEEEEe-CCCcEEEEeCCCCeeeEE-ecCC----C--CCeEEEEE---CCCCCEEEEEe-CCCcccc-c
Q 033677           19 NDVVFSPLSRGAFVTGD-NEGYVAAWDAQSRRRLFE-LPRF----S--NSVASLSY---NHGGQLLAVAS-SCTYQEA-T   85 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~~~~~~~~-~~~~----~--~~v~~v~f---spdg~~la~~s-~d~~~~~-~   85 (114)
                      .++.|++ ...+|+.++ ..|.|..||...+..... +...    .  ..+..|.|   .|+|+++++.. ...|... .
T Consensus        16 E~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           16 EDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             SCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             cCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            4788988 666666666 689999999985543322 2221    1  13579999   68888887533 2244422 2


Q ss_pred             ccCCCCcEEEEEcC
Q 033677           86 VIEEPPQIFIIRID   99 (114)
Q Consensus        86 ~~~~~~~i~i~~~~   99 (114)
                      ...+...++...+.
T Consensus        95 ~~~g~~~v~~~Dl~  108 (334)
T 2p9w_A           95 SSHGASSFHSFNLP  108 (334)
T ss_dssp             CSSSCCEEEEEESS
T ss_pred             ccCCCCEEEEEcCC
Confidence            23334444444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=81.99  E-value=12  Score=26.92  Aligned_cols=50  Identities=18%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEEec---CCCCCeEEEEECCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFELP---RFSNSVASLSYNHG   69 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~~~---~~~~~v~~v~fspd   69 (114)
                      .....++|.| ++.++++ ..+|.|.+++  +++.  +..+.   ........|+|+|+
T Consensus        31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pd   85 (352)
T 2ism_A           31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPR   85 (352)
T ss_dssp             SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred             CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCC
Confidence            3467899999 8886655 4569999998  3432  11111   12346789999998

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=81.90  E-value=2.3  Score=29.22  Aligned_cols=53  Identities=9%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEE
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~   75 (114)
                      +.++.+.+ ++.++ .++  +.|..|| .+++.+..+......+.++.+.++|.+++.
T Consensus       179 ~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~  231 (330)
T 3hxj_A          179 TSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT  231 (330)
T ss_dssp             CSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred             eeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence            44556666 55544 444  7788888 666666655555566778888888876553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=81.46  E-value=2.9  Score=28.75  Aligned_cols=56  Identities=13%  Similarity=0.189  Sum_probs=38.4

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      +..+...+ ++. |+.++.++.|..||.. ++.+..+......+.++.+.++|.+++..
T Consensus       139 ~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t  194 (330)
T 3hxj_A          139 YATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS  194 (330)
T ss_dssp             CSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES
T ss_pred             eeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe
Confidence            34456666 555 5667778999999998 76666665445566777887888766543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=81.44  E-value=11  Score=27.71  Aligned_cols=61  Identities=8%  Similarity=0.034  Sum_probs=40.8

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~   76 (114)
                      ....+|++.+..++++++-...+.|.+.|++.......+.........|++.|.+..|..+
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEE
Confidence            3467899987234566666677899999988655443344444567899999965555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=81.22  E-value=9.2  Score=27.89  Aligned_cols=60  Identities=8%  Similarity=-0.128  Sum_probs=37.1

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEE
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~   75 (114)
                      ..+.+|+|++..+.++++-...+.|..++.........+.........+++.+.+..|..
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            346789999723455666666789999998866533333322334567888875544433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=81.17  E-value=12  Score=26.24  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=28.8

Q ss_pred             eEEEEECCCCCCEEEEEeCCC--cEEEEeCCCCeeeEEec
Q 033677           18 VNDVVFSPLSRGAFVTGDNEG--YVAAWDAQSRRRLFELP   55 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg--~I~iwD~~~~~~~~~~~   55 (114)
                      +.+|.|++  +.++.+.+.+|  .|+.+|+.+++.+....
T Consensus        23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~   60 (243)
T 3mbr_X           23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAE   60 (243)
T ss_dssp             EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEE
T ss_pred             cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEe
Confidence            56889987  45777777764  89999999999887775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-08
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 1   MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS 60
            FRCH  +    +   PVN + FSP       T  ++G ++ W+ Q+R+++    +F N 
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294

Query: 61  VASLSYNHGGQLLAVASS 78
            + +       +L +A+S
Sbjct: 295 DSVVKIACSDNILCLATS 312

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 1   MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS 60
                  +    + +  +  V FS   R   + G ++     WDA    R   L    N 
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314

Query: 61  VASLSYNHGGQLLAVASS 78
           V+ L     G  +A  S 
Sbjct: 315 VSCLGVTDDGMAVATGSW 332

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-06
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 12  RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ 71
             H   V  V+F    +   ++  ++  +  WD +++R +  L    + V SL ++    
Sbjct: 244 VGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 72  LLAVASS 78
            +   S 
Sbjct: 303 YVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH 68
            H  PV  V+F P+     V+   +  +  WD ++      L   ++SV  +S++H
Sbjct: 14 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 1/93 (1%)

Query: 11  GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG 70
           G          +     + A             D ++            +     Y+   
Sbjct: 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 163

Query: 71  QLLAVASSCTYQEATV-IEEPPQIFIIRIDDIQ 102
           ++ A+ +S    E  V ++E  +I ++   D+ 
Sbjct: 164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 1   MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS 60
           +    P       H   V  + F+   +  FV+   +  + AW       +F+  + S+S
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQS-KESSS 308

Query: 61  VASLSYNHGGQLLAVASS 78
           V S   +   + +   S 
Sbjct: 309 VLSCDISVDDKYIVTGSG 326

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ 82
           +TG ++  +  +D+ +++ L +L      V +L Y HGG L++ ++  T +
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 1   MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNS 60
                        H   V  V  +       ++G  +  V  WD +S   L  L    NS
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 61  VASLSYNHG------GQLLAVASS 78
           V S++  +G        + A  S 
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSG 376

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 9  KDGRHHLVPVND----VVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVAS 63
          ++    LV   D     +        F VT  + G +A  D  S++ +  +     +V  
Sbjct: 8  RESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-TGYAVHI 66

Query: 64 LSYNHGGQLLAVAS 77
             +  G+ L V  
Sbjct: 67 SRMSASGRYLLVIG 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.56
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.52
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.45
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.45
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.44
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.41
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.38
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.36
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.36
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.29
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.28
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.27
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.27
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.26
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.25
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.24
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.24
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.2
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.18
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.14
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.13
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.12
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.1
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.07
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.01
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.68
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.61
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.55
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.53
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.43
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.42
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.4
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.36
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.31
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.29
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.24
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.22
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.2
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.19
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.08
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.17
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.72
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.33
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.27
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.66
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.46
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.4
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	95.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.8
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.64
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.13
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.1
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	93.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.03
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.78
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.42
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.42
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.56
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.22
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.98
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.86
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	82.6

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.7e-14  Score=99.07  Aligned_cols=95  Identities=24%  Similarity=0.454  Sum_probs=73.4

Q ss_pred             ceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCc
Q 033677            2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY   81 (114)
Q Consensus         2 ~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~   81 (114)
                      ++|++.......|.++|++|+|+| ++.+|++|+.||.|++||+++++.+..+..+ .++..++|+|+|++||+|++|++
T Consensus       238 ~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTH
T ss_pred             eeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCc
Confidence            456666556667789999999999 9999999999999999999999988877543 45567888899999999999965


Q ss_pred             ccc----cc--cCCCCcEEEEEc
Q 033677           82 QEA----TV--IEEPPQIFIIRI   98 (114)
Q Consensus        82 ~~~----~~--~~~~~~i~i~~~   98 (114)
                      ...    .+  ...+..||....
T Consensus       316 ~~~~~~~~~~~~~~~~~i~~~~~  338 (342)
T d1yfqa_         316 FKTNAAIDQTIELNASSIYIIFD  338 (342)
T ss_dssp             HHHCSSSCTTSCCCCCEEEEEET
T ss_pred             EEEeeeeCCCccCCCCeEEEEcC
Confidence            422    22  245556776543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=5e-14  Score=97.66  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=61.8

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.||.|++||+.+++.+..+..|..+|++++|+|+|.++++|+.|
T Consensus        54 H~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  118 (340)
T d1tbga_          54 HLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc
Confidence            467899999999 99999999999999999999999999999999999999999999999999988

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.4e-13  Score=93.73  Aligned_cols=65  Identities=18%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|.+++|+| ++++|++|+.||.|++||+++++.+..+.+|..+|++++|+|++++||+|+.|
T Consensus       246 ~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         246 HDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             CCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            345799999999 99999999999999999999999999999999999999999999999999988

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=3.2e-13  Score=93.46  Aligned_cols=66  Identities=24%  Similarity=0.289  Sum_probs=62.1

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..+|+.++|+| ++++|++|+.||.|++||+.+++.+..+.+|..+|++++|+|+|.+||+|+.|
T Consensus       268 ~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         268 NIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             TCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             cccCceEEEEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence            4466799999999 99999999999999999999999999999999999999999999999999988

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=4.5e-13  Score=91.10  Aligned_cols=65  Identities=29%  Similarity=0.522  Sum_probs=61.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|+||+.||+|++||+.+++.+..+..|...|.+++|+|++.+++++..+
T Consensus        16 H~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          16 HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            467899999999 99999999999999999999999999999999999999999999999988876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.41  E-value=1.1e-12  Score=90.52  Aligned_cols=65  Identities=17%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.||.|++||+++++++..+. .|...|++++|+|+|++++++..+
T Consensus        11 H~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~   76 (299)
T d1nr0a2          11 HNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD   76 (299)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred             CCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccccee
Confidence            467899999999 99999999999999999999998887774 678899999999999887766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.2e-12  Score=93.41  Aligned_cols=69  Identities=22%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCC---cEEEEeCCCCeeeEEec-------------CCCCCeEEEEECCCCCEEEEE
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEG---YVAAWDAQSRRRLFELP-------------RFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg---~I~iwD~~~~~~~~~~~-------------~~~~~v~~v~fspdg~~la~~   76 (114)
                      .|..+|++|+|+| ++++|++|+.|+   .|++||+++++++..+.             +|...|++++|+|||++||+|
T Consensus       229 ~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         229 NNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             cccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence            3577899999999 999999999987   48999999988777663             688899999999999999999


Q ss_pred             eCC----Ccc
Q 033677           77 SSC----TYQ   82 (114)
Q Consensus        77 s~d----~~~   82 (114)
                      +.|    .|+
T Consensus       308 s~D~~v~vWd  317 (393)
T d1sq9a_         308 GWDGKLRFWD  317 (393)
T ss_dssp             ETTSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            998    576

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=9.7e-13  Score=94.63  Aligned_cols=64  Identities=11%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..||++++|+| ++.+|++|+.||.|++||.++++  .+..+.+|..+|++++|+|++++||+++.|
T Consensus         7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_           7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC
Confidence            45799999999 99999999999999999998764  566778999999999999999999999988

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=3.5e-12  Score=90.48  Aligned_cols=64  Identities=19%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC------------------CCCCeEEEEECCCCCEEEE
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR------------------FSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~------------------~~~~v~~v~fspdg~~la~   75 (114)
                      |..+|++|+|+| ++++|++|+ |+.|++||+.+++.+..+..                  +...|++++|+|+|++|++
T Consensus        61 H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          61 HTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            567899999999 999999986 89999999999887766542                  4556999999999999999


Q ss_pred             EeCC
Q 033677           76 ASSC   79 (114)
Q Consensus        76 ~s~d   79 (114)
                      |+.|
T Consensus       139 ~~~d  142 (388)
T d1erja_         139 GAED  142 (388)
T ss_dssp             EETT
T ss_pred             cccc
Confidence            9988

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-11  Score=86.24  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=58.7

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++++|+| ++++|++++.||.|++||+.+++.+..+ .+...|++++|+|+|++||+|+.|
T Consensus       263 ~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         263 LHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETT
T ss_pred             ccccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            3466799999999 9999999999999999999999888765 467899999999999999999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=1e-11  Score=88.02  Aligned_cols=65  Identities=25%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE------CCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY------NHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f------spdg~~la~~s~d   79 (114)
                      |...|++++|+| ++++|++|+.||.|++||+++++++..+++|..+|+++++      +|++.+||+|+.|
T Consensus       307 ~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         307 HKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             CSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             ccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence            345799999999 9999999999999999999999999999999999999975      6789999999988

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.27  E-value=1.4e-11  Score=87.18  Aligned_cols=65  Identities=25%  Similarity=0.381  Sum_probs=57.2

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee--EEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL--FELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~--~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++++|++|+.||.|++||+.+....  ..+..|..+|.+++|+|++++|++++.+
T Consensus        57 H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~  123 (311)
T d1nr0a1          57 HSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG  123 (311)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC
T ss_pred             CCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc
Confidence            567899999999 9999999999999999999987644  3466788999999999999999988764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=2.4e-11  Score=83.74  Aligned_cols=58  Identities=24%  Similarity=0.495  Sum_probs=51.5

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |++++|+   +++|+||+.||.|++||+.+++++..+.+|..+|++++|+|++ +|++|+.|
T Consensus        16 itc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D   73 (355)
T d1nexb2          16 ITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD   73 (355)
T ss_dssp             EEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETT
T ss_pred             EEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecc
Confidence            5666654   4799999999999999999999999999999999999999865 78888888

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-11  Score=87.57  Aligned_cols=65  Identities=23%  Similarity=0.245  Sum_probs=54.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eE--EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LF--ELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~--~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|.+|+|+| ++++|++|+ ||.|++||+.+...   +.  ....|...|++++|+|||++||+++.|
T Consensus        49 ~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            4677899999999 999999987 89999999976432   22  234678899999999999999999988

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.3e-11  Score=79.87  Aligned_cols=60  Identities=20%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...|++++|   ++++|+||+.||+|++||+++++++..+.+|..+|++++|  ++++|++|+.|
T Consensus        15 ~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D   74 (293)
T d1p22a2          15 SKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD   74 (293)
T ss_dssp             CCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             CCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccc
Confidence            445887664   5589999999999999999999999999999999999987  57799999988

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.6e-11  Score=83.81  Aligned_cols=65  Identities=9%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee---EEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL---FELPRFSNSVASLSYNHGG-QLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~---~~~~~~~~~v~~v~fspdg-~~la~~s~d   79 (114)
                      |...|++|+|+| ++++|++|+.||+|++||++++...   .....|..+|++++|+|++ .+|++|+.|
T Consensus        10 h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_          10 PKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             CSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            455699999999 9999999999999999999765432   2233689999999999875 578888887

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=4.9e-11  Score=85.52  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee--EEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL--FELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~--~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| ++++|++|+.|+.|++||++++...  ..+..+...|++++|+|+++.|++++.|
T Consensus        50 H~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          50 HNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeeccc
Confidence            456899999999 9999999999999999999877543  3345778899999999999999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.20  E-value=1.1e-10  Score=82.47  Aligned_cols=65  Identities=25%  Similarity=0.376  Sum_probs=59.6

Q ss_pred             eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++|+|+| +++ +|++|+.||.|++||+++++....+..|..+|++++|+|++++|++++.|
T Consensus       145 h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         145 QARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccc-cceeeecccccccccccccccccccccccccccccccccccCcccccccccccc
Confidence            456799999999 775 68999999999999999999998888999999999999999999999987

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=4.8e-11  Score=86.17  Aligned_cols=63  Identities=29%  Similarity=0.340  Sum_probs=55.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec------CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP------RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~------~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+++++|+| ++ +|++|+.||.|++||+++++.+..+.      +|..+|++++|+|||++||+|+.|
T Consensus       184 ~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         184 SQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             CCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC
Confidence            44588999999 76 89999999999999999988776553      578899999999999999999876

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.5e-11  Score=81.07  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+|.+ ++++ ++++|+||+.||+|++||+.+++++..+.+|..+|.+++|+|+  +|++++.|
T Consensus        16 ~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2          16 DDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             TTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             CCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            445654 3555 6689999999999999999999999999999999999999975  89999888

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.13  E-value=2.5e-10  Score=78.43  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE---EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF---ELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~---~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      |..+|++++|+| ++.+|++++.||.|++||+.++....   .+..|..+|++++|+|+|.+||+|+.|
T Consensus       178 ~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d  245 (299)
T d1nr0a2         178 HPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD  245 (299)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCC
Confidence            356799999999 99999999999999999998765443   344678899999999999999999988

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.9e-10  Score=76.15  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=55.0

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-----CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-----RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-----~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|...+.++.++|   ++|++|+.||.|++||+++++.++.+.     ++...|++++|+|++.+||+|+.|
T Consensus       258 ~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         258 KHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             SCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             eeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            4566788888887   689999999999999999998887764     456789999999999999999876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=4.9e-10  Score=79.05  Aligned_cols=66  Identities=20%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             CeecCeEEEEECCCC-CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC---CCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLS-RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN---HGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~-~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs---pdg~~la~~s~d   79 (114)
                      .+..+|++++|+| + +.+|++++.||.|++||+++++.+..+..|..++..+.|+   |||++|++++.|
T Consensus       203 ~~~~~v~~v~~~p-d~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D  272 (325)
T d1pgua1         203 KQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD  272 (325)
T ss_dssp             CTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT
T ss_pred             CCCCccEEeeecc-ccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC
Confidence            3466799999999 6 5889999999999999999999999998887777666665   789999999988

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.3e-09  Score=74.43  Aligned_cols=65  Identities=22%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCC----------CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHG----------GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspd----------g~~la~~s~d   79 (114)
                      +..+|++++|+| ++.+|++|+.||.|++||+.++..... +..|..+|++++|+|+          +.+||+|+.|
T Consensus       161 ~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         161 LRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             cCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence            456799999999 999999999999999999998876543 5678899999999875          4689999988

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=7.4e-10  Score=75.74  Aligned_cols=65  Identities=12%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             CeecCeEEEEECCCC----------CCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLS----------RGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~----------~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|..+|++++|+| .          +.+|++|+.|+.|++||+++ .+.+..+.+|...|++++|+|+++ |++++.|
T Consensus       203 ~h~~~v~~~~~~p-~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D  278 (287)
T d1pgua2         203 FRTSKINAISWKP-AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD  278 (287)
T ss_dssp             CCSSCEEEEEECC-CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred             ccccccceeeecc-cccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECC
Confidence            4567899999987 4          46899999999999999977 455666678999999999999874 6777777

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.93  E-value=5.6e-09  Score=72.36  Aligned_cols=65  Identities=9%  Similarity=0.130  Sum_probs=54.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .|...|.+++|+| +++.|++++.+.  .|.+||.++++. ..+..+...|..++|+|||++|++++.+
T Consensus        40 ~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~  106 (360)
T d1k32a3          40 PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDR  106 (360)
T ss_dssp             SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccc
Confidence            3466799999999 998887766543  789999998764 4577889999999999999999999887

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=2.7e-08  Score=69.86  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCC-CCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHG-GQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspd-g~~la~~s~d   79 (114)
                      |..+|++++|+| ++ .++++++.||.|++||....+......   .+...|++++|+|+ +.+||+++.|
T Consensus       158 h~~~v~~~~~~~-~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         158 HSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  227 (325)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             cccccccccccc-cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccc
Confidence            456799999999 66 467899999999999998877665553   55778999999997 6889999888

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=2.3e-08  Score=69.13  Aligned_cols=65  Identities=8%  Similarity=0.026  Sum_probs=58.5

Q ss_pred             CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+...|..++|+| +++.|++++.++.+.+|++.+++....+..+...+..++|+|||++||.+..
T Consensus        83 ~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          83 ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             CCCceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence            3466799999999 9999999999999999999999888888888889999999999999987654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.68  E-value=4.4e-08  Score=67.21  Aligned_cols=57  Identities=5%  Similarity=-0.071  Sum_probs=48.6

Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeC
Q 033677           21 VVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        21 v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ++|.+ ++++|++++.|+.|.+||+.+++.+.+++ .+...+..++|+|||++++++..
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~   59 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN   59 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence            56888 88999999999999999999999888876 44566789999999998766554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.61  E-value=1.5e-08  Score=73.77  Aligned_cols=61  Identities=10%  Similarity=-0.020  Sum_probs=48.0

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE--Eec---CCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF--ELP---RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~--~~~---~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+.+|+|+| ++++|++++.||.|++||+.+++...  .++   .+...+.+++|+|||+++++++.
T Consensus        63 ~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2          63 AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec
Confidence            478999999 99999999999999999999876443  222   33445667788899998876653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=4.4e-07  Score=61.70  Aligned_cols=62  Identities=13%  Similarity=0.291  Sum_probs=56.4

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+..+.|+| ++..+++++.||.|++||++++..+..+..|..+|++++|++  ++|++|+.|
T Consensus       201 ~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~d  262 (355)
T d1nexb2         201 TDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAAD  262 (355)
T ss_dssp             SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTT
T ss_pred             ccccccccccc-cceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecc
Confidence            45678899999 899999999999999999999999999999999999999974  689999988

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.53  E-value=3e-07  Score=66.70  Aligned_cols=50  Identities=20%  Similarity=0.096  Sum_probs=44.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .++++.+.||.|++||+.+++.+..++.+ ..+..++|||||++|++++.|
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d   82 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD   82 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCC
Confidence            35688889999999999999999998865 458999999999999999887

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.43  E-value=1.6e-07  Score=69.08  Aligned_cols=62  Identities=15%  Similarity=-0.029  Sum_probs=46.7

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEEec---CCCCCeEEEEECCCCCEEE-EEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFELP---RFSNSVASLSYNHGGQLLA-VASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~~~---~~~~~v~~v~fspdg~~la-~~s~d   79 (114)
                      .+..++|+| ++++|++++.||.|.+||+.+++.  ...++   .+...+.+..|||||++|+ ++..+
T Consensus        63 ~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~  130 (432)
T d1qksa2          63 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP  130 (432)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence            488999999 999999999999999999987653  23333   3344556667889999764 45444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.42  E-value=6.7e-07  Score=65.63  Aligned_cols=50  Identities=20%  Similarity=0.030  Sum_probs=44.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      -++++.+.||.|.+||.++++++..+..+ ..+..++|||||++|++++.|
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~d   82 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRD   82 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCC
Confidence            34699999999999999999999998765 468999999999999999887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=3.2e-07  Score=62.79  Aligned_cols=65  Identities=23%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             eecCeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFEL---PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~---~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +...+..|+|+| +++.| +++..|+.|++|++........+   ......+..++|+|||++|+++..+
T Consensus        35 ~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~  103 (333)
T d1ri6a_          35 VPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN  103 (333)
T ss_dssp             CSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT
T ss_pred             CCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC
Confidence            345688999999 99877 45556899999999765332222   2344567789999999999988754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.36  E-value=2.2e-06  Score=58.15  Aligned_cols=60  Identities=12%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+..+.++| ++..++.+  ++.|.+||+.+++.+..+. +...+.+++|+|||++|++++.+
T Consensus       241 ~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         241 VFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             SCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             cceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCC
Confidence            3466788899 88777665  5899999999999888774 56678899999999999998776

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=1.9e-06  Score=58.53  Aligned_cols=51  Identities=6%  Similarity=-0.021  Sum_probs=41.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEE-eCC
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVA-SSC   79 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~-s~d   79 (114)
                      ++|++++.|+.|.+||+.+++.+..++.  ....+..++|+|||++++++ +.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~   55 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS   55 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC
Confidence            4789999999999999999998888764  34567899999999987544 444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.4e-06  Score=59.43  Aligned_cols=51  Identities=10%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeEEe--cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           29 GAFVTGDNEGYVAAWDAQSRRRLFEL--PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~--~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+++++.|+.|++||+.+...+..+  ..+...+..|+|||||++|+++..+
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~   57 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP   57 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC
Confidence            45688889999999999765433333  3677889999999999998766653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.24  E-value=1.8e-06  Score=58.83  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             cCeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCC------CCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFS------NSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~------~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+.+|+|+| +++.+ ++++.++.|.+||+.+++.+..+....      ..+..++|+|||++|+++..+
T Consensus        40 ~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          40 FGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             CSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             CCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecC
Confidence            3467999999 98765 666778999999999998887765322      235689999999999877643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.22  E-value=4.5e-06  Score=55.96  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..|+|+| ++++| ++++.++.|.+||+.+++.+..+..+. .+..++|++++..++++..+
T Consensus        33 ~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          33 NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT
T ss_pred             CceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccc
Confidence            367899999 98865 677789999999999999888887554 46899999999987766654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.20  E-value=1.6e-05  Score=53.12  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             CeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+..++|.+ ++..++.+..   ++.|.+||..+++.+..+.. ...+..++|+|||++|.++..
T Consensus       201 ~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         201 APSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             EEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET
T ss_pred             Ccceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEEC
Confidence            356789999 8876655433   46899999999988877754 456899999999997754443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1e-05  Score=53.18  Aligned_cols=59  Identities=12%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+|..+.+++   ..|++++.||.|++||+++...+..+..+...+..  +++++.+|++++.|
T Consensus       179 ~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         179 RGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             SCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETT
T ss_pred             cccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCC
Confidence            3466666665   68999999999999999999988888888887765  45678899999988

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=3.7e-06  Score=61.22  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             eecCeEEEEECCCCCCEEEEEeC---------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           14 HLVPVNDVVFSPLSRGAFVTGDN---------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        14 ~~~~V~~v~f~p~~~~~~~t~s~---------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +...|.++.|+| |++.|+.++.         ++.+.+||+.+++ +..+..+...+..+.|||||+.+|.....
T Consensus        60 ~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~  132 (470)
T d2bgra1          60 FGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWNN  132 (470)
T ss_dssp             SSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEETT
T ss_pred             ccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEeecc
Confidence            355689999999 9998887743         5688899999887 44567788889999999999999987654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.93  E-value=1.8e-05  Score=55.05  Aligned_cols=63  Identities=19%  Similarity=-0.036  Sum_probs=49.3

Q ss_pred             CeecCeEEEEECCCCCCEEEEE-----eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           13 HHLVPVNDVVFSPLSRGAFVTG-----DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        13 ~~~~~V~~v~f~p~~~~~~~t~-----s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+..|+..++++| ++..++..     +.++.+.+||..+++.+..+.....+  .++|||||++|+++..
T Consensus        18 ~~~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~   85 (373)
T d2madh_          18 AADGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             cCCCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEee
Confidence            3466789999999 99877653     23457999999999988887654433  7999999999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.88  E-value=2.5e-05  Score=54.21  Aligned_cols=53  Identities=11%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             cCeEEEEECCCCCC--EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC
Q 033677           16 VPVNDVVFSPLSRG--AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG   69 (114)
Q Consensus        16 ~~V~~v~f~p~~~~--~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd   69 (114)
                      ..+..++|+| +++  ++++++.|+.|++||+.+++.+..+..+....+.+++.++
T Consensus       318 ~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         318 HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            4578899999 986  4578899999999999999999999888888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=2.6e-05  Score=53.55  Aligned_cols=54  Identities=11%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             cCeEEEEECCCCCC--EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC
Q 033677           16 VPVNDVVFSPLSRG--AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG   70 (114)
Q Consensus        16 ~~V~~v~f~p~~~~--~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg   70 (114)
                      ..+.+++|+| +++  ++++++.|+.|.+||+++++.+.++..+......+.+.++|
T Consensus       300 ~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         300 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            3467899999 886  46778889999999999999999988776666677766554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=9.5e-05  Score=50.62  Aligned_cols=57  Identities=14%  Similarity=-0.025  Sum_probs=42.5

Q ss_pred             eEEEEECCCCCCEEEEEe-----CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGD-----NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s-----~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      +.-.+..| ++..++...     .++.|.+||..+++.+.++.....+  .++|||||++|++++
T Consensus         4 ~~~~a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~   65 (355)
T d2bbkh_           4 RILEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHAS   65 (355)
T ss_dssp             CBCCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEE
T ss_pred             cEeEeeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEe
Confidence            44445689 888776543     3557999999999988887654444  699999999887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.42  E-value=0.0001  Score=51.69  Aligned_cols=60  Identities=13%  Similarity=0.064  Sum_probs=45.0

Q ss_pred             EEEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCCC-------CCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRFS-------NSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~~-------~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..++|+| ++..|+..+          .|+.|.+||..+++.+..+..+.       .....++|+|||++|+++..+
T Consensus        68 ~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~  144 (368)
T d1mdah_          68 SLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             CEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             CcceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC
Confidence            4689999 998877754          36789999999998877664221       223469999999999887644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.17  E-value=0.0014  Score=44.90  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .+..+++.| +++++++...+++|..||.....  ..+......+..++|+|||+++++....
T Consensus        29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECC-CCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCC
Confidence            477899999 99999999999999999876443  3344556778999999999988876554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.05  E-value=0.00096  Score=47.95  Aligned_cols=56  Identities=14%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-----CCCCCeEEEEECCCCCEEEEEeC
Q 033677           20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-----RFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-----~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+.|.+ +++++..  .|+.|.+||+.+++....+.     .+...|.+++|||||++||+++.
T Consensus        21 ~~~W~~-d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~   81 (470)
T d2bgra1          21 SLRWIS-DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (470)
T ss_dssp             CCEECS-SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEE
T ss_pred             CCEeCC-CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEEC
Confidence            577888 7766553  47889999999987665443     34567999999999999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.92  E-value=0.0046  Score=42.83  Aligned_cols=61  Identities=11%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+..++|.+ +++++++-..++.|..||..++.....+.........++|++||+++++...
T Consensus        41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~  101 (319)
T d2dg1a1          41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG  101 (319)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred             CcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecC
Confidence            457899999 8998888888999999998877655555555667889999999998876544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.72  E-value=0.0051  Score=42.68  Aligned_cols=61  Identities=7%  Similarity=0.104  Sum_probs=47.8

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .-.+++.+ +++++++....+.|.+||.+.++....+......+++++|.||++.|.+...+
T Consensus       228 pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         228 ADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            35789999 89998888888999999998777666565555678999999999866555443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.013  Score=38.24  Aligned_cols=58  Identities=16%  Similarity=0.053  Sum_probs=37.7

Q ss_pred             eEEEEECCCCCCEEEEEeC-CCcEEEE--eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           18 VNDVVFSPLSRGAFVTGDN-EGYVAAW--DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~-Dg~I~iw--D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .....|+| ++..++..+. .+...+|  |...+.  ..............|||||+.||..+.
T Consensus       173 ~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         173 NQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             cccccccc-ccceeEEEeecCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEc
Confidence            45678999 8876655544 4444554  544443  234444556678899999999987664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.27  E-value=0.005  Score=42.62  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=38.1

Q ss_pred             ecCeEEEEECCCCCC--EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE
Q 033677           15 LVPVNDVVFSPLSRG--AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY   66 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~--~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f   66 (114)
                      ...+..++|+| +++  ++++++.|+.|.+||..+++.+.+++. ....+.|++
T Consensus       313 ~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~-g~~P~~l~~  364 (368)
T d1mdah_         313 GHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVEL-DKGPESLSV  364 (368)
T ss_dssp             EEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCC-CSCCCEEEC
T ss_pred             CCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC-CCCCCEEEE
Confidence            34678899999 885  457778899999999999998888763 333455554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.17  E-value=0.0067  Score=39.69  Aligned_cols=53  Identities=9%  Similarity=0.094  Sum_probs=39.0

Q ss_pred             EECCCC--CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677           22 VFSPLS--RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS   77 (114)
Q Consensus        22 ~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s   77 (114)
                      ..+| +  ++.++-. .+|.|.+.|+.+++. ..+......+...+|||||+.||...
T Consensus         5 ~~sP-di~G~~v~f~-~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           5 LLNP-DIHGDRIIFV-CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             CEEE-EEETTEEEEE-ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             ccCC-CCCCCEEEEE-eCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEE
Confidence            3467 7  7665543 356788889998764 45656667788999999999998764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.099  Score=33.76  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=43.4

Q ss_pred             CeEEEEECCCCCCEEEEEeCCC---cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEG---YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg---~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ++..-+|+| |++.|+-...+.   .+.+.+...+.. ..+...........|+|+|+.++.....
T Consensus        40 ~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~  103 (269)
T d2hqsa1          40 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSK  103 (269)
T ss_dssp             CEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred             ceeeeEECC-CCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeec
Confidence            456789999 998887554433   466667766653 3444566778899999999998876643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.46  E-value=0.037  Score=36.67  Aligned_cols=61  Identities=13%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ...+|++.| +++++++...++.|..+|.+.................|++.++|.++++-..
T Consensus       141 ~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~  201 (260)
T d1rwia_         141 DPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN  201 (260)
T ss_dssp             SCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred             CcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC
Confidence            456899999 8899888888899999998765433322244566789999999988776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.40  E-value=0.0067  Score=44.77  Aligned_cols=60  Identities=20%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             EEEEECCCCCCEEEEEeCCCcEEEEeCCC----------CeeeEEe-----cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQS----------RRRLFEL-----PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~----------~~~~~~~-----~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ...+|.+ +++.+.+...|..|..|++..          ...+.++     .+|...+.+.+|+|||++|++++.-
T Consensus       315 lh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~  389 (441)
T d1qnia2         315 LHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF  389 (441)
T ss_dssp             EEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred             ccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcc
Confidence            4468999 888899999999999999742          1223333     3555556677899999999999543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.18  E-value=0.086  Score=34.78  Aligned_cols=59  Identities=15%  Similarity=0.132  Sum_probs=43.0

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~   75 (114)
                      .....+|++.+ +++++++....+.|..++...... ..+. ........|+++++|.++++
T Consensus       181 ~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         181 ITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             CCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEE
T ss_pred             cCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEE
Confidence            34467899999 889988888888898888765432 2222 22346789999999987665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=95.04  E-value=0.055  Score=37.79  Aligned_cols=60  Identities=8%  Similarity=0.115  Sum_probs=40.2

Q ss_pred             CeEEEEECCCCCCEEEE-EeCCCcEEEEeCCCCeee--EEe---cC--------------CCCCeEEEEECCCCCEEEEE
Q 033677           17 PVNDVVFSPLSRGAFVT-GDNEGYVAAWDAQSRRRL--FEL---PR--------------FSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t-~s~Dg~I~iwD~~~~~~~--~~~---~~--------------~~~~v~~v~fspdg~~la~~   76 (114)
                      ....++|+| +++++++ .-.++.|.+||+..+...  ...   ..              .......+.++|||++|+++
T Consensus       194 gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         194 HPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            467799999 8876644 555789999998765322  111   10              01124578999999988776


Q ss_pred             e
Q 033677           77 S   77 (114)
Q Consensus        77 s   77 (114)
                      .
T Consensus       273 n  273 (365)
T d1jofa_         273 S  273 (365)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.80  E-value=0.26  Score=32.59  Aligned_cols=58  Identities=5%  Similarity=0.030  Sum_probs=41.1

Q ss_pred             cCeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEE
Q 033677           16 VPVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAV   75 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~   75 (114)
                      ....+|++.| +++++++-.. ++.|.+|+. +++.+..+.  ........|++.|||.++++
T Consensus       200 ~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         200 NYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             CSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             cCCccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE
Confidence            3467899999 8888777543 557999985 466555553  23346789999999976553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.64  E-value=0.33  Score=33.58  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             eEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeE---Ee--cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLF---EL--PRFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~---~~--~~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      +..+.|+| ++++++++.. ...|.+|+......+.   ..  .........++|+|+|+++.+....
T Consensus       147 ~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         147 IHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence            56899999 9987666654 4578888765432111   11  1234578899999999988776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.39  E-value=0.11  Score=34.91  Aligned_cols=61  Identities=7%  Similarity=0.074  Sum_probs=43.9

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecCCCCCeEEEEE---CCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPRFSNSVASLSY---NHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~~~~~v~~v~f---spdg~~la~~s~d   79 (114)
                      ..+++|.+ +++++++...++.|..++...+... ......-..+++++|   ++|++.|.+++..
T Consensus       210 pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         210 IDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            44689999 9998888888999999987654322 222233456899999   7788887776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.13  E-value=0.19  Score=33.36  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEE
Q 033677           15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVA   76 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~   76 (114)
                      ......+++.+ +++++++....+.|++||.. ++.+.++.  +.......|++.|+|+++++-
T Consensus       156 ~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad  217 (279)
T d1q7fa_         156 LEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIAD  217 (279)
T ss_dssp             CSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             ccccceeeecc-ceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEE
Confidence            45577899999 88888888888999999975 45566653  334567899999999977653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.044  Score=39.88  Aligned_cols=63  Identities=14%  Similarity=0.037  Sum_probs=44.0

Q ss_pred             cCeEEEEECCCCCCEEEEEe---------CCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677           16 VPVNDVVFSPLSRGAFVTGD---------NEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s---------~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      ..+....|+| +++.++...         ..+.+.+||+.++.......  .....+....|||||+.||.....
T Consensus        61 ~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~  134 (465)
T d1xfda1          61 LRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN  134 (465)
T ss_dssp             TTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT
T ss_pred             cccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecc
Confidence            3566788999 998766553         35788899999876432222  224456678999999999876643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.38  E-value=0.42  Score=32.16  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC-CCCCEEEEEe
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN-HGGQLLAVAS   77 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs-pdg~~la~~s   77 (114)
                      .-++++.. +++++++....|.|..||.+ ++.+..+......+++++|- ||.+.|.+.+
T Consensus       201 pdG~~vD~-~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         201 MDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEEECT-TSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ccceEEcC-CCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            56789999 89988888788899999964 66677776545679999994 6766555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.32  E-value=0.089  Score=38.51  Aligned_cols=59  Identities=5%  Similarity=-0.133  Sum_probs=43.5

Q ss_pred             EEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCC--EEEEEeCC
Q 033677           20 DVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQ--LLAVASSC   79 (114)
Q Consensus        20 ~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~--~la~~s~d   79 (114)
                      ...+.| |++.| ++...++.|.++|+++++....+. .....+..++|+|+|+  +++..+.+
T Consensus        76 ~t~gtp-DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~  138 (441)
T d1qnia2          76 MTDGRY-DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF  138 (441)
T ss_dssp             EETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS
T ss_pred             eecccC-CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC
Confidence            344568 88665 555678899999999998776554 4567899999999998  55555544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.03  E-value=0.39  Score=32.61  Aligned_cols=62  Identities=13%  Similarity=0.177  Sum_probs=42.6

Q ss_pred             cCeEEEEECCCCCCEEEEEeC-------CCcEEEEeCCCCeeeEEecC----CCCCeEEEEECCCCCEEEEEeC
Q 033677           16 VPVNDVVFSPLSRGAFVTGDN-------EGYVAAWDAQSRRRLFELPR----FSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t~s~-------Dg~I~iwD~~~~~~~~~~~~----~~~~v~~v~fspdg~~la~~s~   78 (114)
                      ....+++|.| +++++++...       +|+|..||..++........    .......++|.++|..|.++..
T Consensus        18 ~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~   90 (314)
T d1pjxa_          18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             CCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC
Confidence            3467889999 9988776443       46799999988764332221    1234678999999987766643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.78  E-value=0.34  Score=32.85  Aligned_cols=60  Identities=10%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC------CCCCeEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR------FSNSVASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~------~~~~v~~v~fspdg~~la~~s~d   79 (114)
                      .-.+++.+ +++++++....+.|.+||. +++.+..+..      +...+++++|.|++..+.+.+.+
T Consensus       230 PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         230 PDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             EEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             eeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            34789999 9999999888999999996 5776666642      22357899999988777666554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.16  Score=36.67  Aligned_cols=60  Identities=10%  Similarity=0.026  Sum_probs=40.7

Q ss_pred             eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCC-----------------eEEEEECCCCCEEEEEeCC
Q 033677           18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNS-----------------VASLSYNHGGQLLAVASSC   79 (114)
Q Consensus        18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~-----------------v~~v~fspdg~~la~~s~d   79 (114)
                      +....|+| +++.|+=.. ++.|.+.+..++...+.... ....                 -.++-|||||+.||....|
T Consensus       116 l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         116 LQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             CSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             cceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            44578999 997765554 56788888877655544332 1111                 2578899999999987654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.42  E-value=0.32  Score=31.08  Aligned_cols=61  Identities=8%  Similarity=0.029  Sum_probs=39.7

Q ss_pred             CeEEEEECCCCCCEEEEEeC-CC-----cEEEEeCCCCeeeEEecC------CCCCeEEEEECCCCCEEEEEeC
Q 033677           17 PVNDVVFSPLSRGAFVTGDN-EG-----YVAAWDAQSRRRLFELPR------FSNSVASLSYNHGGQLLAVASS   78 (114)
Q Consensus        17 ~V~~v~f~p~~~~~~~t~s~-Dg-----~I~iwD~~~~~~~~~~~~------~~~~v~~v~fspdg~~la~~s~   78 (114)
                      .+...+|+| |++.|+-... ++     .|.+++..+++.......      .........|+|||+.|+....
T Consensus        42 ~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          42 VINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             cccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            367789999 9987764332 22     477778877764432111      1234567899999999987543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.96  E-value=0.39  Score=35.55  Aligned_cols=70  Identities=21%  Similarity=0.403  Sum_probs=46.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCC----CCCeEEEEECCCCC-EEEEEeCC--Ccc---cccccCCCCcEEEEE
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRF----SNSVASLSYNHGGQ-LLAVASSC--TYQ---EATVIEEPPQIFIIR   97 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~----~~~v~~v~fspdg~-~la~~s~d--~~~---~~~~~~~~~~i~i~~   97 (114)
                      +.++++|..||.++.+|.++++.+.++...    ..|   +.|.-||+ |+++.+.-  .+.   ..........|+...
T Consensus       488 gglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~  564 (573)
T d1kb0a2         488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV  564 (573)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            468888999999999999999999887632    233   55556886 66665543  111   112234556788887


Q ss_pred             cCc
Q 033677           98 IDD  100 (114)
Q Consensus        98 ~~~  100 (114)
                      +.-
T Consensus       565 l~g  567 (573)
T d1kb0a2         565 VGG  567 (573)
T ss_dssp             ETC
T ss_pred             eCC
Confidence            744

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.39  E-value=0.21  Score=37.19  Aligned_cols=51  Identities=25%  Similarity=0.483  Sum_probs=37.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCC-EEEEEeC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~-~la~~s~   78 (114)
                      +.++++|+.||.++.+|.++++.+.+++... ..-.=++|..+|+ |+|+.+.
T Consensus       497 gglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            4688889999999999999999998886321 1112267777895 6666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.56  E-value=1.6  Score=30.61  Aligned_cols=83  Identities=11%  Similarity=0.170  Sum_probs=49.4

Q ss_pred             cCeEEEEECCCCCCEEEE-EeCCC----cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCc---cccc--
Q 033677           16 VPVNDVVFSPLSRGAFVT-GDNEG----YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY---QEAT--   85 (114)
Q Consensus        16 ~~V~~v~f~p~~~~~~~t-~s~Dg----~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~---~~~~--   85 (114)
                      +.+.+++++| ++++++- -+.+|    .|++.|+.+++.+..... ......++|.+|++.|....-+.-   ..+.  
T Consensus       125 ~~~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ceecceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            3456778999 8877653 22233    788999999986532211 111246899999998876654421   1111  


Q ss_pred             ccCCCCcEEEEEcCc
Q 033677           86 VIEEPPQIFIIRIDD  100 (114)
Q Consensus        86 ~~~~~~~i~i~~~~~  100 (114)
                      ....+..++.|.+..
T Consensus       203 ~~~~~~~v~~h~lgt  217 (430)
T d1qfma1         203 STNLHQKLYYHVLGT  217 (430)
T ss_dssp             CCCCCCEEEEEETTS
T ss_pred             ccCCcceEEEEECCC
Confidence            124455667666643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.22  E-value=0.31  Score=36.23  Aligned_cols=51  Identities=16%  Similarity=0.314  Sum_probs=35.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCC-EEEEEeC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~-~la~~s~   78 (114)
                      +.++++|+.||.++.+|.++++.+.++... ...-.=+.|..||+ |+|+...
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            467888999999999999999999877532 11112256666886 6666543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.98  E-value=0.33  Score=36.34  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=35.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCC-EEEEEeC
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQ-LLAVASS   78 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~-~la~~s~   78 (114)
                      +.+++.|..||.++.+|.++++.+.++.... ..-.=++|.-||+ |+|+.+.
T Consensus       484 gglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G  536 (596)
T d1w6sa_         484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (596)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEec
Confidence            4677789999999999999999998876321 1111245556886 6666543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.86  E-value=0.46  Score=35.12  Aligned_cols=73  Identities=14%  Similarity=0.314  Sum_probs=46.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCC-EEEEEeCC-Cc---ccc-----cccCCCCcEEEE
Q 033677           28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQ-LLAVASSC-TY---QEA-----TVIEEPPQIFII   96 (114)
Q Consensus        28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~-~la~~s~d-~~---~~~-----~~~~~~~~i~i~   96 (114)
                      +.+++.|+.||.++.+|.++++.+.++.... ..-.=++|.-+|+ +||+.+.. .+   ..+     ......+.|+..
T Consensus       469 gglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F  548 (560)
T d1kv9a2         469 GNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVF  548 (560)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEE
Confidence            4677889999999999999999998876321 1111256666885 66665543 11   111     122444567777


Q ss_pred             EcCc
Q 033677           97 RIDD  100 (114)
Q Consensus        97 ~~~~  100 (114)
                      .+..
T Consensus       549 ~L~g  552 (560)
T d1kv9a2         549 ALDG  552 (560)
T ss_dssp             EETC
T ss_pred             EeCC
Confidence            7743

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.60  E-value=3.6  Score=28.23  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             ecCeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEE--ecCCCCCeEEEEECC-CCCEEEEEeC
Q 033677           15 LVPVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFE--LPRFSNSVASLSYNH-GGQLLAVASS   78 (114)
Q Consensus        15 ~~~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~--~~~~~~~v~~v~fsp-dg~~la~~s~   78 (114)
                      ..-.|+|+++| +++.| ++-...+.|.+|++.....+..  ....+..+-.+.+.+ +|.+++.+..
T Consensus       205 l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         205 FDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             CCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            56689999999 87654 5556678999998875432222  223456677899976 6666665543