Citrus Sinensis ID: 033690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKPQV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccEEEcccccccEEEEEccEEEEEccccccccccccccccccccccccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEccccccEEEcccccccccHHHHHHHHccccccccccccccHcccccccccccccccccc
Coil and Loop (DISEMBL)
MEGLTASEVAGFGVGTVLLCATIaapkldaffsasqrsslgmckkcgdvgmiacsrckgmgliksnglfgfsimdelyppldgaesqmksigcskckgrghfccpgcsnkpqv
Flexible Loop (DISEMBL)
megltaseVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHfccpgcsnkpqv
Low Complexity Region (SEG)
MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKPQV
Disordered region (IsUnstruct)
*******EVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAE*QMKSIGCSKCKGRGHFCCPG*******
Disordered Region (DISOPRED)
******S*VAGFGVGTVLLCATIAAPKLDAFFSASQRS*LGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDEL******************CKGRGHFCCPGCSN****
Disordered Region (DISEMBL)
MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKPQV
Disordered Region (DISPRO)
****TASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAE*QMKSIGCSKCKGRGHFCCPGC******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKPQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
359494138	111	PREDICTED: uncharacterized protein LOC10	0.982	1.0	0.630	4e-35
224120664	112	predicted protein [Populus trichocarpa]	0.991	1.0	0.628	1e-33
388520549	110	unknown [Lotus japonicus]	0.955	0.981	0.601	6e-33
358249301	110	uncharacterized protein LOC100812361 [Gl	0.964	0.990	0.559	3e-30
449438725	114	PREDICTED: uncharacterized protein LOC10	0.946	0.938	0.579	2e-29
115453523	111	Os03g0414400 [Oryza sativa Japonica Grou	0.955	0.972	0.536	1e-27
413946606	159	hypothetical protein ZEAMMB73_970258 [Ze	0.955	0.679	0.545	1e-26
195607836	111	hypothetical protein [Zea mays] gi|41394	0.955	0.972	0.545	2e-26
195652581	111	hypothetical protein [Zea mays]	0.955	0.972	0.545	3e-26
255569904	109	conserved hypothetical protein [Ricinus	0.946	0.981	0.592	6e-26

>gi|359494138|ref|XP_003634726.1| PREDICTED: uncharacterized protein LOC100853072 [Vitis vinifera] gi|297737443|emb|CBI26644.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 89/111 (80%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           ME +TASE+AGFGVGT+LLCATIAAP++D+F SASQR SLGMCKKCGD+ MIACS+CKG+
Sbjct: 1   MENITASELAGFGVGTLLLCATIAAPRVDSFISASQRRSLGMCKKCGDLKMIACSKCKGV 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKP 111
           G +K+   F F+++D+LY    G ES+++S  C  C+GRGHF CP CS  P
Sbjct: 61  GSVKAGAPFSFNLVDDLYQSFWGDESKVRSTACPSCQGRGHFSCPDCSKSP 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120664|ref|XP_002330921.1| predicted protein [Populus trichocarpa] gi|222873115|gb|EEF10246.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           M  LT+SEVAGFGVG +LLCATI+APK+D+F SASQRSSLGMCK+CGD+ MIACS CKG 
Sbjct: 1   MNNLTSSEVAGFGVGALLLCATISAPKIDSFISASQRSSLGMCKRCGDLRMIACSGCKGT 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSNKPQV 113
           GL+K  G   F+ +D++Y  L G +S++K+I CSKC+ RG FCCP CS    V
Sbjct: 61  GLVKEGGALSFTFIDDMYESL-GGDSKVKTIRCSKCQARGRFCCPECSKAQSV 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520549|gb|AFK48336.1| unknown [Lotus japonicus]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 85/108 (78%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           M+ +TASE+AG GVG +LL ATIAAPK+DAFFS+SQRSSLGMCK+CG++  +ACSRCKG 
Sbjct: 1   MDNITASEIAGLGVGVLLLSATIAAPKIDAFFSSSQRSSLGMCKRCGNIRRLACSRCKGT 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCS 108
           G +K  GLFG +++D+LY  +   ES +K I C KC+ +G+F CP CS
Sbjct: 61  GFVKEGGLFGINLVDDLYETIGNRESTVKQIACVKCQAKGYFSCPDCS 108

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249301|ref|NP_001240027.1| uncharacterized protein LOC100812361 [Glycine max] gi|255633962|gb|ACU17343.1| unknown [Glycine max]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 84/109 (77%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           M+ +TASEVAGFGVG VLLCAT+AA K+DAFFS+SQRSSLGMCK+CG++  +ACS CKG 
Sbjct: 1   MDNITASEVAGFGVGAVLLCATVAATKVDAFFSSSQRSSLGMCKRCGNLRRLACSTCKGT 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSN 109
           G I+  G+ G  ++++L+  +  +E ++K I C KC+ +G+F CP CS 
Sbjct: 61  GSIREGGILGIKLVEDLFETIGNSEPKVKQIACVKCQAKGYFSCPNCSE 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438725|ref|XP_004137138.1| PREDICTED: uncharacterized protein LOC101207960 [Cucumis sativus] gi|449476385|ref|XP_004154722.1| PREDICTED: uncharacterized protein LOC101225591 [Cucumis sativus]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 81/107 (75%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           ME +T SE+AGF VG +L+CATI+AP++DAF S+SQR SLGMCK+CGD+ MIACS+CKG+
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGC 107
           G  KS GLFG +I+ + Y  L   ES + SI C++C  +G F CP C
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDC 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115453523|ref|NP_001050362.1| Os03g0414400 [Oryza sativa Japonica Group] gi|41469078|gb|AAS07052.1| expressed protein [Oryza sativa Japonica Group] gi|108708805|gb|ABF96600.1| expressed protein [Oryza sativa Japonica Group] gi|113548833|dbj|BAF12276.1| Os03g0414400 [Oryza sativa Japonica Group] gi|125544312|gb|EAY90451.1| hypothetical protein OsI_12037 [Oryza sativa Indica Group] gi|125586657|gb|EAZ27321.1| hypothetical protein OsJ_11261 [Oryza sativa Japonica Group] gi|215704738|dbj|BAG94766.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765188|dbj|BAG86885.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 86/110 (78%), Gaps = 2/110 (1%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           MEGLT+SE+AGFGVG +L+CATIAA ++D F ++SQR+SLGMCKKCGD+ ++ACS+CKG+
Sbjct: 1   MEGLTSSEIAGFGVGALLVCATIAAQRVDGFIASSQRTSLGMCKKCGDLRIVACSQCKGV 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKS-IGCSKCKGRGHFCCPGCSN 109
           G ++  GLF F ++D++Y  L GAE++  + + C+ C+ +G   CP CS 
Sbjct: 61  GSVRKGGLFTFGMLDDIYESL-GAETKTSNLVPCTNCRSKGRLLCPECSK 109

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413946606|gb|AFW79255.1| hypothetical protein ZEAMMB73_970258 [Zea mays]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 83/110 (75%), Gaps = 2/110 (1%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           MEGLT+SE+AGF VG +LL ATIAAPK+D F ++SQR SLGMCK+CGD+ ++ACS+CKG 
Sbjct: 49  MEGLTSSEIAGFVVGALLLGATIAAPKVDGFIASSQRRSLGMCKRCGDLRIVACSQCKGT 108

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKS-IGCSKCKGRGHFCCPGCSN 109
           G  +S G+    ++D+LY  L GAE++ ++ + C+KC+ RG   CP CS 
Sbjct: 109 GSARSGGMLSLGMLDDLYESL-GAEAKTENLVPCTKCRSRGRLLCPECSK 157

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195607836|gb|ACG25748.1| hypothetical protein [Zea mays] gi|413946607|gb|AFW79256.1| hypothetical protein ZEAMMB73_970258 [Zea mays]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 83/110 (75%), Gaps = 2/110 (1%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           MEGLT+SE+AGF VG +LL ATIAAPK+D F ++SQR SLGMCK+CGD+ ++ACS+CKG 
Sbjct: 1   MEGLTSSEIAGFVVGALLLGATIAAPKVDGFIASSQRRSLGMCKRCGDLRIVACSQCKGT 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKS-IGCSKCKGRGHFCCPGCSN 109
           G  +S G+    ++D+LY  L GAE++ ++ + C+KC+ RG   CP CS 
Sbjct: 61  GSARSGGMLSLGMLDDLYESL-GAEAKTENLVPCTKCRSRGRLLCPECSK 109

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195652581|gb|ACG45758.1| hypothetical protein [Zea mays]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 82/110 (74%), Gaps = 2/110 (1%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           MEGLT+SE+AGF VG +LL ATIAAPK+D F ++SQR SLGMCK+CGD+ ++ACS+CKG 
Sbjct: 1   MEGLTSSEIAGFVVGALLLGATIAAPKVDGFIASSQRRSLGMCKRCGDLRIVACSQCKGT 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKS-IGCSKCKGRGHFCCPGCSN 109
           G  +S G+    ++D+LY  L GAE++ ++ + C+KC  RG   CP CS 
Sbjct: 61  GSARSGGMLSLGVLDDLYESL-GAEAKTENLVPCTKCSSRGRLMCPECSK 109

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569904|ref|XP_002525915.1| conserved hypothetical protein [Ricinus communis] gi|223534744|gb|EEF36435.1| conserved hypothetical protein [Ricinus communis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 87/108 (80%), Gaps = 1/108 (0%)

Query: 1   MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
           M  +TASE+AG GVG++LLC  IAAPK+D+F S+SQRSSLGMCK CGD+ M+ACS+C+G+
Sbjct: 1   MNNITASEIAGLGVGSLLLCCAIAAPKIDSFISSSQRSSLGMCKTCGDLRMVACSKCRGI 60

Query: 61  GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCS 108
           G++K++G F F++MD+LY  L G E ++K+  CSKC+ RG F CP CS
Sbjct: 61  GVVKADGPFSFNMMDDLYQSL-GGEPKVKTFKCSKCQARGRFSCPDCS 107

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:1005716167	99	AT5G15802 "AT5G15802" [Arabido	0.858	0.979	0.555	3.2e-26

TAIR|locus:1005716167 AT5G15802 "AT5G15802" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 60/108 (55%), Positives = 73/108 (67%)

Query:     1 MEGLTASEVAGFGVGTVLLCATIAAPKLDAFFSASQRSSLGMCKKCGDVGMIACSRCKGM 60
             M+ LT++EVAG  VG +LL ATIAAPK+DAF +ASQR SLGMC+KCGD+  +AC RCKG 
Sbjct:     1 MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRRSLGMCRKCGDLKNVACGRCKGT 60

Query:    61 GLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCS 108
             G IKS G FGFS  D          S  +S+ C  C+ +G F CP CS
Sbjct:    61 GTIKSGGFFGFS--DS---------SNTRSVACDNCQAKGCFPCPECS 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       113   0.00091  102 3  11 22  0.43    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.37u 0.11s 11.48t   Elapsed:  00:00:01
  Total cpu time:  11.37u 0.11s 11.48t   Elapsed:  00:00:01
  Start:  Tue May 21 00:18:38 2013   End:  Tue May 21 00:18:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027315001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (111 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.57
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.32
PRK14280	376	chaperone protein DnaJ; Provisional	97.86
PRK14282	369	chaperone protein DnaJ; Provisional	97.85
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	97.83
PRK14298	377	chaperone protein DnaJ; Provisional	97.77
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.77
PRK14276	380	chaperone protein DnaJ; Provisional	97.75
PRK14296	372	chaperone protein DnaJ; Provisional	97.74
PRK14285	365	chaperone protein DnaJ; Provisional	97.68
PRK14297	380	chaperone protein DnaJ; Provisional	97.68
PRK14287	371	chaperone protein DnaJ; Provisional	97.66
PRK14278	378	chaperone protein DnaJ; Provisional	97.64
PRK14277	386	chaperone protein DnaJ; Provisional	97.61
PRK10767	371	chaperone protein DnaJ; Provisional	97.59
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.57
PRK14281	397	chaperone protein DnaJ; Provisional	97.55
PRK14295	389	chaperone protein DnaJ; Provisional	97.55
PRK14283	378	chaperone protein DnaJ; Provisional	97.54
PRK14284	391	chaperone protein DnaJ; Provisional	97.54
PRK14301	373	chaperone protein DnaJ; Provisional	97.52
PRK14289	386	chaperone protein DnaJ; Provisional	97.52
PRK14291	382	chaperone protein DnaJ; Provisional	97.52
PRK14286	372	chaperone protein DnaJ; Provisional	97.5
PRK14300	372	chaperone protein DnaJ; Provisional	97.48
PRK14294	366	chaperone protein DnaJ; Provisional	97.46
PRK14279	392	chaperone protein DnaJ; Provisional	97.43
PRK14288	369	chaperone protein DnaJ; Provisional	97.42
PRK14290	365	chaperone protein DnaJ; Provisional	97.42
PRK14293	374	chaperone protein DnaJ; Provisional	97.4
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.38
PRK14292	371	chaperone protein DnaJ; Provisional	97.28
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	97.23
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.74
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.52
PRK14290	365	chaperone protein DnaJ; Provisional	95.83
PRK10767	371	chaperone protein DnaJ; Provisional	95.81
PRK14288	369	chaperone protein DnaJ; Provisional	95.77
KOG2813	406	consensus Predicted molecular chaperone, contains	95.76
PLN03165	111	chaperone protein dnaJ-related; Provisional	95.73
PRK14286	372	chaperone protein DnaJ; Provisional	95.68
PRK14300	372	chaperone protein DnaJ; Provisional	95.68
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	95.65
PRK14298	377	chaperone protein DnaJ; Provisional	95.64
PRK14285	365	chaperone protein DnaJ; Provisional	95.52
PRK14282	369	chaperone protein DnaJ; Provisional	95.44
PRK14284	391	chaperone protein DnaJ; Provisional	95.44
PRK14296	372	chaperone protein DnaJ; Provisional	95.41
PRK14301	373	chaperone protein DnaJ; Provisional	95.41
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.37
PRK14294	366	chaperone protein DnaJ; Provisional	95.35
PRK14280	376	chaperone protein DnaJ; Provisional	95.24
PRK14277	386	chaperone protein DnaJ; Provisional	95.21
PRK14279	392	chaperone protein DnaJ; Provisional	95.21
PRK14276	380	chaperone protein DnaJ; Provisional	95.19
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	95.16
PTZ00037	421	DnaJ_C chaperone protein; Provisional	95.16
PRK14295	389	chaperone protein DnaJ; Provisional	95.07
PRK14278	378	chaperone protein DnaJ; Provisional	95.06
PRK14297	380	chaperone protein DnaJ; Provisional	95.05
PRK14281	397	chaperone protein DnaJ; Provisional	94.85
PRK14289	386	chaperone protein DnaJ; Provisional	94.77
PRK14291	382	chaperone protein DnaJ; Provisional	94.64
PRK14293	374	chaperone protein DnaJ; Provisional	94.64
PRK14283	378	chaperone protein DnaJ; Provisional	94.27
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	93.94
PRK14287	371	chaperone protein DnaJ; Provisional	93.38
PRK14292	371	chaperone protein DnaJ; Provisional	93.37
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	93.15
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	93.1
KOG2813	406	consensus Predicted molecular chaperone, contains	93.05
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	91.88
PRK00635	1809	excinuclease ABC subunit A; Provisional	89.55
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	89.51
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	85.99
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	84.57
KOG2907	116	consensus RNA polymerase I transcription factor TF	83.46
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	82.81
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	82.2
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	81.75
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	81.31

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.57  E-value=1.1e-07  Score=69.12  Aligned_cols=88  Identities=26%  Similarity=0.605  Sum_probs=65.7

Q ss_pred             CchhhhhhhhhhHHHhhhhhcccchhhHHh-----hhhhcccccccccCCcceEEcCCCccceeeecCCccccccccccC
Q 033690            4 LTASEVAGFGVGTVLLCATIAAPKLDAFFS-----ASQRSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELY   78 (113)
Q Consensus         4 ~t~seiagf~vg~lll~atiaa~kvd~fi~-----~sqr~sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiy   78 (113)
                      |..+-|.-+.||.|-|+|-|--|=   |+-     +..|+-...|..|.+.+...|+.|+|+|.+...-. +        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g--------   70 (111)
T PLN03165          3 LDQNTIVAISVGVVSIAVGIGIPV---FYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-G--------   70 (111)
T ss_pred             cchhhhhhhhhhhhhhhhccCCcE---EEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-C--------
Confidence            445556667777777777777662   322     23566778999999999999999999999974310 0        


Q ss_pred             CCCCccccccceeeccCCCCccceeCCCCCCC
Q 033690           79 PPLDGAESQMKSIGCSKCKGRGHFCCPGCSNK  110 (113)
Q Consensus        79 es~g~~~~~~~~v~C~kCqgkG~~~CP~Csk~  110 (113)
                             ..+...+|++|+|.|..+|+.|..+
T Consensus        71 -------~~q~~~~C~~C~G~Gk~~C~~C~G~   95 (111)
T PLN03165         71 -------GEKEVSKCINCDGAGSLTCTTCQGS   95 (111)
T ss_pred             -------cEEEEEECCCCCCcceeeCCCCCCC
Confidence                   1234789999999999999999764

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.32  E-value=6.8e-07  Score=57.91  Aligned_cols=54  Identities=28%  Similarity=0.682  Sum_probs=34.9

Q ss_pred             ccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcccee----CCCCCC
Q 033690           43 CKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFC----CPGCSN  109 (113)
Q Consensus        43 Ck~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~----CP~Csk  109 (113)
                      |+.|.+.+.      ..|+.|+|+|.|...-...|.             ..+..++|++|+|+|.+.    |+.|..
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~-------------~~~~~~~C~~C~G~G~~i~~~~C~~C~G   64 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGG-------------VFQMQQTCPKCGGTGKIIEKDPCKTCKG   64 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSST-------------TEEEEEE-TTTSSSSEE-TSSB-SSSTT
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCe-------------EEEEEEECCCCcceeeEECCCCCCCCCC
Confidence            677776554      899999999999654321111             122378999999999885    999964

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.86  E-value=1.3e-05  Score=66.31  Aligned_cols=57  Identities=30%  Similarity=0.726  Sum_probs=44.2

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+      ...|+.|+|+|++...-...++|+             +...+|++|+|+|..   +|+.|..+
T Consensus       144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  209 (376)
T PRK14280        144 ETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRV-------------VNRQTCPHCNGTGQEIKEKCPTCHGK  209 (376)
T ss_pred             ccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceE-------------EEEEEcCCCCCCCceecCCCCCCCCc
Confidence            7899999977      568999999999976554444441             126799999999975   69999654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=97.85  E-value=1.2e-05  Score=66.13  Aligned_cols=57  Identities=28%  Similarity=0.839  Sum_probs=44.8

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+      ...|++|+|+|++...-.++++|+             +.+.+|++|+|+|.+   +|+.|..+
T Consensus       153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  218 (369)
T PRK14282        153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVF-------------VSERTCERCGGTGKIPGEYCHECGGS  218 (369)
T ss_pred             ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcce-------------EEEEECCCCCCcceeCCCCCCCCCCc
Confidence            6899999976      468999999999987665555541             125699999999976   79999654

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=97.83  E-value=1.4e-05  Score=64.88  Aligned_cols=57  Identities=26%  Similarity=0.718  Sum_probs=45.5

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+      ...|+.|+|+|.+...-.++++|+    +         ...+|++|.|+|.+   +|+.|..+
T Consensus       144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~----~---------~~~~C~~C~G~G~~~~~~C~~C~G~  209 (354)
T TIGR02349       144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFF----Q---------QQQTCPTCGGEGKIIKEPCSTCKGK  209 (354)
T ss_pred             CcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCce----E---------EEEecCCCCCcceecCCCCCCCCCC
Confidence            6899999987      567999999999977666565541    1         15699999999986   69999754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.77  E-value=1.9e-05  Score=65.51  Aligned_cols=57  Identities=30%  Similarity=0.744  Sum_probs=43.0

Q ss_pred             ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+.      ..|+.|.|+|.|...-...+++             .+.+.+|++|+|+|.+   +|+.|..+
T Consensus       142 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~-------------~~~~~~C~~C~G~G~~~~~~C~~C~G~  207 (377)
T PRK14298        142 ERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQ-------------FVTTTTCSTCHGRGQVIESPCPVCSGT  207 (377)
T ss_pred             ccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCcee-------------EEEEEeCCCCCCCCcccCCCCCCCCCc
Confidence            68999999775      7899999999996543322222             1237899999999965   79999654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.8e-05  Score=67.37  Aligned_cols=54  Identities=28%  Similarity=0.629  Sum_probs=43.3

Q ss_pred             ccccccCCc------ceEEcCCCccceeeecCCc-cccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDV------GMIACSRCKGMGLIKSNGL-FGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl------~~vaCsrCKGtG~Ik~gg~-f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|.+|+|-      ....|+.|+|+|.|...-. ..|.                .+.+|++|+|.|.+   +|+.|...
T Consensus       143 ~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~----------------~~~~C~~C~G~G~~i~~pC~~C~G~  206 (371)
T COG0484         143 VTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFS----------------FQQTCPTCNGTGKIIKDPCGKCKGK  206 (371)
T ss_pred             eECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEE----------------EEEECCCCccceeECCCCCCCCCCC
Confidence            789999999      7899999999999865532 1122                27899999999987   69999543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.75  E-value=2.3e-05  Score=64.88  Aligned_cols=57  Identities=26%  Similarity=0.781  Sum_probs=44.4

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+      ...|+.|+|+|.|...-...++|+             +...+|++|+|+|..   +|+.|..+
T Consensus       147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  212 (380)
T PRK14276        147 ATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMM-------------RRQVTCDVCHGTGKEIKEPCQTCHGT  212 (380)
T ss_pred             ccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceE-------------EEEEECCCCCCCCccccCCCCCCCCc
Confidence            6899999987      478999999999977655555541             126799999999975   79999653

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.74  E-value=2.6e-05  Score=64.68  Aligned_cols=57  Identities=32%  Similarity=0.724  Sum_probs=43.0

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+      ...|+.|+|+|.+...-.+++.+             .+.+.+|++|+|+|..   +|+.|...
T Consensus       150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~-------------~q~~~~C~~C~G~G~~~~~~C~~C~G~  215 (372)
T PRK14296        150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQ-------------FQQSAKCNVCNGAGKIIKNKCKNCKGK  215 (372)
T ss_pred             eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceE-------------EEEEecCCCcCCcceeecccccCCCCc
Confidence            6799999976      46799999999996654333311             1227899999999976   59999754

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.68  E-value=4.1e-05  Score=63.20  Aligned_cols=53  Identities=28%  Similarity=0.726  Sum_probs=41.9

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+      ...|+.|+|+|++..+.    +|+             +.+.+|++|+|+|.+   +|+.|..+
T Consensus       147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  208 (365)
T PRK14285        147 MLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG----GFF-------------RVTTTCPKCYGNGKIISNPCKSCKGK  208 (365)
T ss_pred             ccCCCCCCcccCCCCCCccCCCccCceeEEecC----cee-------------EEeeecCCCCCcccccCCCCCCCCCC
Confidence            6899999987      56899999999998632    221             127899999999976   69999654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.68  E-value=3.5e-05  Score=63.67  Aligned_cols=57  Identities=28%  Similarity=0.732  Sum_probs=43.3

Q ss_pred             ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.++      ..|+.|+|+|++...-..+++++             +...+|++|+|+|..   +|+.|..+
T Consensus       149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  214 (380)
T PRK14297        149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSF-------------VSTTTCDKCGGSGKVIEDPCNKCHGK  214 (380)
T ss_pred             ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCcee-------------EEEEeCCCCCCCceEcCCCCCCCCCC
Confidence            68999999874      67999999999875544333321             126799999999976   79999653

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.66  E-value=3.7e-05  Score=63.57  Aligned_cols=56  Identities=27%  Similarity=0.649  Sum_probs=44.0

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSN  109 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk  109 (113)
                      ..|+.|.|.+      ...|+.|.|+|.+...-.++|+|+-             .+.+|++|+|+|.+   +|+.|..
T Consensus       139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-------------~~~~C~~C~G~G~~~~~~C~~C~G  203 (371)
T PRK14287        139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVV-------------NRRVCHHCEGTGKIIKQKCATCGG  203 (371)
T ss_pred             ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEE-------------EEEeCCCCCCCCccccccCCCCCC
Confidence            6899999876      5789999999999776555555411             16699999999976   6999964

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.64  E-value=4.9e-05  Score=63.02  Aligned_cols=57  Identities=26%  Similarity=0.683  Sum_probs=42.5

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+      ...|+.|+|+|.+...-...++++             +...+|++|+|+|.+   +|+.|..+
T Consensus       140 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  205 (378)
T PRK14278        140 VLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQV-------------MTSRPCPTCRGVGEVIPDPCHECAGD  205 (378)
T ss_pred             ccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeE-------------EEEEECCCCCccceeeCCCCCCCCCc
Confidence            7899999876      468999999999865533333321             125699999999975   69999654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=97.61  E-value=5e-05  Score=63.01  Aligned_cols=57  Identities=25%  Similarity=0.723  Sum_probs=44.1

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+      ...|+.|+|+|.+...-..+++++             +...+|++|+|+|.+   +|+.|..+
T Consensus       156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  221 (386)
T PRK14277        156 EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRI-------------VNIRTCDRCHGEGKIITDPCNKCGGT  221 (386)
T ss_pred             ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceE-------------EEEEECCCCCcceeeccCCCCCCCCC
Confidence            6899999866      578999999999976655555541             124699999999976   69999654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.59  E-value=6.2e-05  Score=61.83  Aligned_cols=53  Identities=26%  Similarity=0.757  Sum_probs=41.1

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+      ...|+.|+|+|+|...-    +|+             +...+|++|+|+|.+   +|+.|..+
T Consensus       143 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  204 (371)
T PRK10767        143 VTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFF-------------TVQQTCPTCHGRGKIIKDPCKKCHGQ  204 (371)
T ss_pred             ccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----ceE-------------EEEEeCCCCCCceeECCCCCCCCCCC
Confidence            7899999977      45899999999986542    121             125699999999987   79999754

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.57  E-value=5.3e-05  Score=64.37  Aligned_cols=58  Identities=28%  Similarity=0.702  Sum_probs=41.7

Q ss_pred             ccccccCCcce-----EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce-----eCCCCCCC
Q 033690           41 GMCKKCGDVGM-----IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF-----CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~-----vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~-----~CP~Csk~  110 (113)
                      ..|+.|.|.+.     ..|+.|+|+|.+..--.+++ |            ..+.+.+|++|+|+|..     +|+.|..+
T Consensus       151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~-~------------~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~  217 (421)
T PTZ00037        151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-M------------IHQTQSTCNSCNGQGKIIPESKKCKNCSGK  217 (421)
T ss_pred             ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecc-e------------eeEEEEeCCCCCCcceeccccccCCcCCCc
Confidence            68999998774     57999999997533322221 1            11237899999999986     69999765


Q ss_pred             C
Q 033690          111 P  111 (113)
Q Consensus       111 ~  111 (113)
                      .
T Consensus       218 g  218 (421)
T PTZ00037        218 G  218 (421)
T ss_pred             c
Confidence            3

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.55  E-value=6.4e-05  Score=62.69  Aligned_cols=57  Identities=28%  Similarity=0.756  Sum_probs=44.2

Q ss_pred             ccccccCCcce-----EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVGM-----IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~-----vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+.     ..|+.|+|+|.+.......++++             +.+.+|++|.|+|..   +|+.|..+
T Consensus       164 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  228 (397)
T PRK14281        164 VPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQF-------------VNITACPTCGGEGRVVKDRCPACYGE  228 (397)
T ss_pred             ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceE-------------EEEEecCCCcceeeeeCCCCCCCCCC
Confidence            67999998764     67999999999987765554431             126699999999975   79999654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.55  E-value=6.5e-05  Score=62.61  Aligned_cols=53  Identities=38%  Similarity=0.814  Sum_probs=41.1

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+      ...|+.|.|+|.+...- ..|.                .+.+|++|+|+|.+   +|+.|..+
T Consensus       167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~----------------~~~~C~~C~G~G~~~~~~C~~C~G~  228 (389)
T PRK14295        167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS-GGFS----------------LSEPCPDCKGRGLIADDPCLVCKGS  228 (389)
T ss_pred             ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-cceE----------------EEEecCCCcceeEEeccCCCCCCCC
Confidence            6799999876      47899999999986542 1111                26799999999976   69999754

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.54  E-value=6.1e-05  Score=62.25  Aligned_cols=58  Identities=28%  Similarity=0.654  Sum_probs=44.7

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP  111 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~  111 (113)
                      ..|+.|.|.+      ...|++|+|+|++...-.++++++             +.+.+|++|.|+|.+   +|+.|..+.
T Consensus       147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~g  213 (378)
T PRK14283        147 KKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQM-------------MNVTTCPDCQGEGKIVEKPCSNCHGKG  213 (378)
T ss_pred             ccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceE-------------EEEEECCCCCccceecCCCCCCCCCce
Confidence            6899999865      567999999999976655444431             125799999999988   899997653

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.54  E-value=8.3e-05  Score=61.82  Aligned_cols=54  Identities=30%  Similarity=0.832  Sum_probs=40.9

Q ss_pred             cccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           40 LGMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        40 L~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ...|+.|.|.+      ...|+.|.|+|.|...-  +  +    |         +-..+|++|+|+|..   +|+.|..+
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G--~----~---------~~~~~C~~C~G~G~~~~~~C~~C~G~  220 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--G--F----F---------SMASTCPECGGEGRVITDPCSVCRGQ  220 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEe--c--e----E---------EEEEECCCCCCCCcccCCcCCCCCCc
Confidence            47899998766      57899999999986431  1  1    1         126799999999975   79999654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.52  E-value=7.2e-05  Score=61.94  Aligned_cols=53  Identities=30%  Similarity=0.907  Sum_probs=41.4

Q ss_pred             ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+.      ..|+.|+|+|+|...  .+  |    +         +.+.+|++|+|+|.+   +|+.|..+
T Consensus       145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G--~----~---------~~~~~C~~C~G~G~~~~~~C~~C~G~  206 (373)
T PRK14301        145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQS--QG--F----F---------QIAVPCPVCRGEGRVITHPCPKCKGS  206 (373)
T ss_pred             ccCCCCCCcccCCCCCCcccCCccCeeEEEEE--ee--e----E---------EEEEeCCCCCceeeecCCCCCCCCCC
Confidence            68999999774      679999999999653  12  1    1         127899999999975   79999754

>PRK14289 chaperone protein DnaJ; Provisional

Probab=97.52  E-value=6.9e-05  Score=61.94  Aligned_cols=59  Identities=25%  Similarity=0.608  Sum_probs=45.6

Q ss_pred             cccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           40 LGMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        40 L~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ...|..|.+.+.      ..|+.|+|+|++..--..+++++             +.+.+|++|.|+|.+   +|+.|+..
T Consensus       154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  220 (386)
T PRK14289        154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTM-------------QTQSTCPTCNGEGKIIKKKCKKCGGE  220 (386)
T ss_pred             ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceE-------------EEEEecCCCCccccccCcCCCCCCCC
Confidence            488999988774      68999999999976544444431             127899999999976   79999765


Q ss_pred             C
Q 033690          111 P  111 (113)
Q Consensus       111 ~  111 (113)
                      .
T Consensus       221 g  221 (386)
T PRK14289        221 G  221 (386)
T ss_pred             c
Confidence            3

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.52  E-value=6.9e-05  Score=62.12  Aligned_cols=54  Identities=35%  Similarity=0.767  Sum_probs=42.0

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc--eeCCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH--FCCPGCSNKP  111 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~--~~CP~Csk~~  111 (113)
                      ..|+.|.|.+      ...|++|+|+|++...+.+ +                +-..+|++|+|+|.  -+|+.|..+.
T Consensus       157 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~-~----------------~~~~~C~~C~G~G~~~~~C~~C~G~g  218 (382)
T PRK14291        157 VPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF-F----------------RISQTCPTCGGEGVLREPCSKCNGRG  218 (382)
T ss_pred             ccCCCCccccCCCCCCCccCCCCCCceEEEEecce-E----------------EEEecCCCCCCceEEccCCCCCCCCc
Confidence            7899999977      6789999999999776321 0                12679999999994  3799997643

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.50  E-value=9.6e-05  Score=61.18  Aligned_cols=53  Identities=26%  Similarity=0.775  Sum_probs=40.9

Q ss_pred             ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+.      ..|+.|+|+|.|...  .  +++             +...+|++|+|+|..   +|+.|..+
T Consensus       151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~--G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  212 (372)
T PRK14286        151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT--Q--GFF-------------SVATTCPTCRGKGTVISNPCKTCGGQ  212 (372)
T ss_pred             ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEE--e--ceE-------------EEEEeCCCCCceeeEecccCCCCCCC
Confidence            68999999874      789999999998654  1  221             125699999999965   79999654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.48  E-value=0.0001  Score=60.86  Aligned_cols=53  Identities=26%  Similarity=0.752  Sum_probs=41.1

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|-+      ...|+.|+|+|.+...    ++|+             +...+|++|+|+|..   +|+.|..+
T Consensus       146 ~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~----~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  207 (372)
T PRK14300        146 VKCDTCHGSGSEKGETVTTCDACSGVGATRMQ----QGFF-------------TIEQACHKCQGNGQIIKNPCKKCHGM  207 (372)
T ss_pred             cccCCCCCcccCCCCCCccCCCccCeEEEEEe----eceE-------------EEEEeCCCCCccceEeCCCCCCCCCc
Confidence            7899999966      6789999999998753    1221             125699999999977   79999754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.46  E-value=0.00011  Score=60.51  Aligned_cols=54  Identities=24%  Similarity=0.732  Sum_probs=41.6

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP  111 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~  111 (113)
                      ..|..|.|.+      ...|+.|.|+|.+...  +  +|+             +-+.+|++|+|+|..   +|+.|..+.
T Consensus       145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~--G~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~g  207 (366)
T PRK14294        145 ETCEECHGSGCEPGTSPTTCPQCGGSGQVTQS--Q--GFF-------------SIRTTCPRCRGMGKVIVSPCKTCHGQG  207 (366)
T ss_pred             ccCCCCCCccccCCCCcccCCCcCCeEEEEEE--e--eeE-------------EEEeeCCCCCCcCeecCcCCCCCCCce
Confidence            7899999977      4689999999998643  1  221             126799999999976   799997643

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.43  E-value=0.00012  Score=61.19  Aligned_cols=53  Identities=30%  Similarity=0.778  Sum_probs=40.7

Q ss_pred             ccccccCCcce------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVGM------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|+.|.|.+.      ..|+.|.|+|.+...-    ++    +         ..+.+|++|+|+|.+   +|+.|..+
T Consensus       174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~----~---------~~~~~C~~C~G~G~~i~~~C~~C~G~  235 (392)
T PRK14279        174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GA----F---------GFSEPCTDCRGTGSIIEDPCEECKGT  235 (392)
T ss_pred             ccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cc----e---------EEEEecCCCCceeEEeCCcCCCCCCC
Confidence            78999999874      6799999999986541    11    1         126899999999965   69999653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.42  E-value=0.00012  Score=60.47  Aligned_cols=53  Identities=28%  Similarity=0.844  Sum_probs=40.1

Q ss_pred             ccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|+|.+     ...|+.|+|+|.|....  +  +    +         +-..+|++|+|+|.+   +|+.|..+
T Consensus       141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--g--~----~---------~~~~~C~~C~G~G~~~~~~C~~C~G~  201 (369)
T PRK14288        141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQ--G--F----M---------SFAQTCGACQGKGKIIKTPCQACKGK  201 (369)
T ss_pred             ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe--c--e----E---------EEEEecCCCCCCceEccccCccCCCc
Confidence            5899999977     46799999999986542  1  1    0         124589999999954   69999754

>PRK14290 chaperone protein DnaJ; Provisional

Probab=97.42  E-value=9.4e-05  Score=60.87  Aligned_cols=58  Identities=31%  Similarity=0.757  Sum_probs=42.0

Q ss_pred             ccccccCCcce-----EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690           41 GMCKKCGDVGM-----IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP  111 (113)
Q Consensus        41 ~mCk~Cggl~~-----vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~  111 (113)
                      ..|+.|.|.+.     ..|+.|+|+|++...-.++  +           ...+.+.+|++|.|+|.+   +|+.|..+.
T Consensus       150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g--~-----------~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  215 (365)
T PRK14290        150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQG--F-----------FRMVTVTTCRTCGGRGRIPEEKCPRCNGTG  215 (365)
T ss_pred             ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccC--e-----------EEEEEEEeCCCCCCceeEccCCCCCCCCce
Confidence            67999988774     6899999999885442222  1           112236799999999966   799997653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.40  E-value=0.00014  Score=60.12  Aligned_cols=58  Identities=26%  Similarity=0.700  Sum_probs=42.8

Q ss_pred             ccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCCC
Q 033690           41 GMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNKP  111 (113)
Q Consensus        41 ~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~~  111 (113)
                      ..|..|.+.+      ...|+.|+|+|++...-...++++             +...+|++|+|+|..   +|+.|..+.
T Consensus       144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~g  210 (374)
T PRK14293        144 ETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSF-------------TQVSECPTCNGTGQVIEDPCDACGGQG  210 (374)
T ss_pred             ccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceE-------------EEEeeCCCCCcceeEeccCCCCCCCCc
Confidence            6799998865      457999999999876543333321             114699999999988   899997543

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.38  E-value=0.00013  Score=66.64  Aligned_cols=65  Identities=31%  Similarity=0.685  Sum_probs=42.3

Q ss_pred             ccccccCCcceE-----EcCCCccceeeecCCccccccccccCCC-CCccccccceeeccCCCCccc----eeCCCCCCC
Q 033690           41 GMCKKCGDVGMI-----ACSRCKGMGLIKSNGLFGFSIMDELYPP-LDGAESQMKSIGCSKCKGRGH----FCCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~~v-----aCsrCKGtG~Ik~gg~f~f~~~ddiyes-~g~~~~~~~~v~C~kCqgkG~----~~CP~Csk~  110 (113)
                      ..|+.|+|.|.+     .|+.|+|||.++.-.+   ..+-.+++- +.  .-....+||++|+|+|.    .+||+|+..
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~---k~~~~~~~~~~D--~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~   77 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDP---KGVANLSRETVD--LFASFEIPCPKCRGKGTVTVYDTCPECGGT   77 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccCh---hhhhhhhhcccc--ccccCCCCCCeeccceeEEEEeecccCCCc
Confidence            469999999876     5999999999954433   111111110 00  11223689999999985    579999653

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.28  E-value=0.00022  Score=58.58  Aligned_cols=57  Identities=23%  Similarity=0.698  Sum_probs=42.6

Q ss_pred             ccccccCCcc-------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCCC
Q 033690           41 GMCKKCGDVG-------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~-------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk~  110 (113)
                      ..|..|.|.+       ...|+.|.|+|.+...-.-.++++             +...+|++|.|.|..   +|+.|..+
T Consensus       140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-------------~~~~~C~~C~G~G~~~~~~C~~C~G~  206 (371)
T PRK14292        140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVV-------------ETQQPCPTCRGEGQIITDPCTVCRGR  206 (371)
T ss_pred             ecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceE-------------EEeeecCCCcccceecCCCCCCCCCc
Confidence            7899999865       578999999999875543333331             115689999999976   79999643

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00057  Score=56.99  Aligned_cols=56  Identities=30%  Similarity=0.765  Sum_probs=47.6

Q ss_pred             hcccccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccceeCCCCCC
Q 033690           37 RSSLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCCPGCSN  109 (113)
Q Consensus        37 r~sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~CP~Csk  109 (113)
                      +-..+-|..|||.+-+.|..|.|.-+|-.+                 ++.......|++|+--|..+||.|+.
T Consensus       226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~-----------------~~~~~~~~rC~~CNENGLvrCp~Cs~  281 (281)
T KOG2824|consen  226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE-----------------EEDDGGVLRCLECNENGLVRCPVCSN  281 (281)
T ss_pred             CCCCCcCCCcCCcceEecCCCCCceeeeee-----------------ccCCCcEEECcccCCCCceeCCccCC
Confidence            556688999999999999999999999775                 13344478999999999999999973

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.74  E-value=0.0015  Score=42.24  Aligned_cols=39  Identities=33%  Similarity=0.865  Sum_probs=27.9

Q ss_pred             cccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcc
Q 033690           38 SSLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRG  100 (113)
Q Consensus        38 ~sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG  100 (113)
                      .....|+.|+|.+++               .|+.|+|+|.+- .                       ..+|+.|.|.|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-----------------------~~~C~~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-----------------------KDPCKTCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-----------------------SSB-SSSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-----------------------CCCCCCCCCcC
Confidence            456789999998876               699999999985 2                       45899999876

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.52  E-value=0.0039  Score=46.59  Aligned_cols=50  Identities=24%  Similarity=0.658  Sum_probs=39.2

Q ss_pred             ccccccccCCcceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccceeC
Q 033690           39 SLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFCC  104 (113)
Q Consensus        39 sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~C  104 (113)
                      ....|..|||.+-|.|+.|.|.-++-..+.+                .......|++|+--|..+|
T Consensus        98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----------------~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          98 GGGVCEGCGGARFVPCSECNGSCKVFAENAT----------------AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCCCcCeEECCCCCCcceEEeccCc----------------ccccEEECCCCCccccccC
Confidence            4567999999999999999999998544321                1123678999999998887

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=95.83  E-value=0.0084  Score=49.48  Aligned_cols=39  Identities=33%  Similarity=0.821  Sum_probs=31.9

Q ss_pred             ccccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.++               ..|+.|+|+|.+.                         .-+|++|.|+|..
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------------~~~C~~C~G~g~v  217 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------------EEKCPRCNGTGTV  217 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------------cCCCCCCCCceeE
Confidence            4678999999985               4799999999873                         3369999999874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=95.81  E-value=0.0088  Score=49.27  Aligned_cols=38  Identities=34%  Similarity=0.855  Sum_probs=30.4

Q ss_pred             cccccccCCcceEE-----------cCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           40 LGMCKKCGDVGMIA-----------CSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        40 L~mCk~Cggl~~va-----------CsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|+.|+|.+++.           |+.|.|+|.+..                         .+|++|.|+|..
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-------------------------DPCKKCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-------------------------CCCCCCCCCceE
Confidence            46899999998874           999999998632                         358999988865

>PRK14288 chaperone protein DnaJ; Provisional

Probab=95.77  E-value=0.0096  Score=49.40  Aligned_cols=39  Identities=36%  Similarity=0.910  Sum_probs=31.3

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++           .|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  204 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK-------------------------TPCQACKGKTYI  204 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc-------------------------ccCccCCCcceE
Confidence            56789999999976           5999999998732                         258899888864

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.0096  Score=51.69  Aligned_cols=23  Identities=30%  Similarity=0.793  Sum_probs=20.7

Q ss_pred             ccccccCCcceEEcCCCccceee
Q 033690           41 GMCKKCGDVGMIACSRCKGMGLI   63 (113)
Q Consensus        41 ~mCk~Cggl~~vaCsrCKGtG~I   63 (113)
                      .-|-.|.+-|.+.|+.|.|.|+.
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~  210 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSN  210 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCcc
Confidence            56999999999999999999963

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=95.73  E-value=0.008  Score=43.85  Aligned_cols=36  Identities=25%  Similarity=0.627  Sum_probs=24.6

Q ss_pred             ccccccccCCcceEEcCCCccceeeecCCcccccccc
Q 033690           39 SLGMCKKCGDVGMIACSRCKGMGLIKSNGLFGFSIMD   75 (113)
Q Consensus        39 sL~mCk~Cggl~~vaCsrCKGtG~Ik~gg~f~f~~~d   75 (113)
                      ....|++|+|.+.+.|..|+|.|+++.. .-+|.|-|
T Consensus        74 ~~~~C~~C~G~Gk~~C~~C~G~G~~~~~-~~~~~~~~  109 (111)
T PLN03165         74 EVSKCINCDGAGSLTCTTCQGSGIQPRY-LDRREFKD  109 (111)
T ss_pred             EEEECCCCCCcceeeCCCCCCCEEEeee-ecccccCC
Confidence            3456888888887778888888877665 44454444

>PRK14286 chaperone protein DnaJ; Provisional

Probab=95.68  E-value=0.01  Score=49.36  Aligned_cols=38  Identities=37%  Similarity=0.897  Sum_probs=29.3

Q ss_pred             cccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           40 LGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        40 L~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|++|+|.+++           .|+.|+|+|.+..                         -+|+.|.|+|..
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~~  215 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-------------------------NPCKTCGGQGLQ  215 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-------------------------ccCCCCCCCcEE
Confidence            4679999998865           6999999997742                         258888888765

>PRK14300 chaperone protein DnaJ; Provisional

Probab=95.68  E-value=0.0098  Score=49.31  Aligned_cols=38  Identities=39%  Similarity=0.990  Sum_probs=30.7

Q ss_pred             cccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           40 LGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        40 L~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|+.|+|.+++           .|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK-------------------------NPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC-------------------------CCCCCCCCceEE
Confidence            4679999999876           6999999998742                         258999998874

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.011  Score=50.63  Aligned_cols=12  Identities=25%  Similarity=0.697  Sum_probs=6.2

Q ss_pred             ccccccccCCcc
Q 033690           39 SLGMCKKCGDVG   50 (113)
Q Consensus        39 sL~mCk~Cggl~   50 (113)
                      +...|++|+|.+
T Consensus       158 ~~~tC~tC~G~G  169 (371)
T COG0484         158 DPKTCPTCNGSG  169 (371)
T ss_pred             CCCcCCCCCCcC
Confidence            444555555544

>PRK14298 chaperone protein DnaJ; Provisional

Probab=95.64  E-value=0.0094  Score=49.68  Aligned_cols=39  Identities=36%  Similarity=0.892  Sum_probs=30.5

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++               .|+.|.|+|.+..                         -+|++|.|+|..
T Consensus       157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  210 (377)
T PRK14298        157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE-------------------------SPCPVCSGTGKV  210 (377)
T ss_pred             CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC-------------------------CCCCCCCCccEE
Confidence            34679999999865               6999999997632                         258999988865

>PRK14285 chaperone protein DnaJ; Provisional

Probab=95.52  E-value=0.012  Score=48.81  Aligned_cols=39  Identities=38%  Similarity=0.939  Sum_probs=31.3

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++           .|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  211 (365)
T PRK14285        162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS-------------------------NPCKSCKGKGSL  211 (365)
T ss_pred             CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC-------------------------CCCCCCCCCCEE
Confidence            45689999998865           7999999998732                         259999999865

>PRK14282 chaperone protein DnaJ; Provisional

Probab=95.44  E-value=0.014  Score=48.29  Aligned_cols=39  Identities=38%  Similarity=0.873  Sum_probs=30.4

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|++|+|.+++               .|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  221 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG-------------------------EYCHECGGSGRI  221 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC-------------------------CCCCCCCCceeE
Confidence            45679999999865               5999999998732                         258889888864

>PRK14284 chaperone protein DnaJ; Provisional

Probab=95.44  E-value=0.011  Score=49.30  Aligned_cols=39  Identities=31%  Similarity=0.885  Sum_probs=31.3

Q ss_pred             ccccccccCCcce-----------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGM-----------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~-----------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|++.++           ..|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  223 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-------------------------DPCSVCRGQGRI  223 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-------------------------CcCCCCCCccee
Confidence            3567999999988           47999999987632                         259999998875

>PRK14296 chaperone protein DnaJ; Provisional

Probab=95.41  E-value=0.013  Score=48.70  Aligned_cols=39  Identities=33%  Similarity=0.981  Sum_probs=30.4

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|++|+|.+++               .|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  218 (372)
T PRK14296        165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK-------------------------NKCKNCKGKGKY  218 (372)
T ss_pred             CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec-------------------------ccccCCCCceEE
Confidence            45679999999865               7999999998732                         358888888854

>PRK14301 chaperone protein DnaJ; Provisional

Probab=95.41  E-value=0.013  Score=48.67  Aligned_cols=40  Identities=38%  Similarity=0.945  Sum_probs=30.8

Q ss_pred             cccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           38 SSLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        38 ~sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      +....|+.|+|.+++           .|+.|+|+|.+..                         -+|++|.|+|..
T Consensus       159 ~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  209 (373)
T PRK14301        159 TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT-------------------------HPCPKCKGSGIV  209 (373)
T ss_pred             CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC-------------------------CCCCCCCCCcee
Confidence            345679999998864           6999999998732                         258888888864

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.37  E-value=0.01  Score=46.51  Aligned_cols=28  Identities=29%  Similarity=0.791  Sum_probs=24.3

Q ss_pred             cccccccCCcceEE-----cCCCccceeeecCC
Q 033690           40 LGMCKKCGDVGMIA-----CSRCKGMGLIKSNG   67 (113)
Q Consensus        40 L~mCk~Cggl~~va-----CsrCKGtG~Ik~gg   67 (113)
                      ...|++|+|.|.+.     |+.|+|+|++++.-
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~  131 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV  131 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence            57899999999876     99999999997763

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=95.35  E-value=0.015  Score=47.96  Aligned_cols=39  Identities=38%  Similarity=1.017  Sum_probs=30.9

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++           .|+.|+|+|.+..                         -+|+.|.|+|..
T Consensus       160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  209 (366)
T PRK14294        160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-------------------------SPCKTCHGQGRV  209 (366)
T ss_pred             CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-------------------------cCCCCCCCceEe
Confidence            35689999999875           6999999998632                         259999988864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=95.24  E-value=0.016  Score=48.07  Aligned_cols=26  Identities=35%  Similarity=0.876  Sum_probs=20.4

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeee
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIK   64 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik   64 (113)
                      ....|+.|+|.+++               .|+.|+|+|.+.
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  199 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI  199 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence            45679999998754               699999998763

>PRK14277 chaperone protein DnaJ; Provisional

Probab=95.21  E-value=0.017  Score=48.07  Aligned_cols=38  Identities=37%  Similarity=0.868  Sum_probs=29.9

Q ss_pred             cccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           40 LGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        40 L~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|+.|+|.+++               .|+.|+|+|.+..                         -+|+.|.|+|..
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT-------------------------DPCNKCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc-------------------------CCCCCCCCCcEE
Confidence            5679999999765               5999999998732                         258888888865

>PRK14279 chaperone protein DnaJ; Provisional

Probab=95.21  E-value=0.018  Score=48.23  Aligned_cols=39  Identities=38%  Similarity=0.900  Sum_probs=31.0

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++           .|+.|.|+|.+..                         -+|..|.|+|..
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~-------------------------~~C~~C~G~g~v  238 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE-------------------------DPCEECKGTGVT  238 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC-------------------------CcCCCCCCCeEE
Confidence            46789999999875           6999999998742                         258888888864

>PRK14276 chaperone protein DnaJ; Provisional

Probab=95.19  E-value=0.017  Score=47.98  Aligned_cols=39  Identities=38%  Similarity=0.805  Sum_probs=29.9

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      +...|+.|+|.+++               .|+.|+|+|.+..                         -+|++|.|+|..
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~~  215 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK-------------------------EPCQTCHGTGHE  215 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc-------------------------CCCCCCCCceEE
Confidence            45789999998764               5999999997742                         258888888864

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=95.16  E-value=0.018  Score=47.01  Aligned_cols=38  Identities=39%  Similarity=0.907  Sum_probs=29.0

Q ss_pred             cccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           40 LGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        40 L~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|+.|+|.++               ..|+.|+|+|.+..                         -+|++|+|+|..
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  212 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-------------------------EPCSTCKGKGRV  212 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-------------------------CCCCCCCCCcEe
Confidence            567999999875               46999999987632                         258889888864

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=95.16  E-value=0.018  Score=49.16  Aligned_cols=41  Identities=34%  Similarity=0.806  Sum_probs=31.6

Q ss_pred             ccccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|++|+|.++               +.|+.|+|+|.+...                       .-+|++|.|+|..
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----------------------~~~C~~C~G~g~v  220 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----------------------SKKCKNCSGKGVK  220 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----------------------cccCCcCCCccee
Confidence            4578999999885               379999999987542                       2368888888865

>PRK14295 chaperone protein DnaJ; Provisional

Probab=95.07  E-value=0.023  Score=47.64  Aligned_cols=40  Identities=38%  Similarity=0.847  Sum_probs=30.9

Q ss_pred             cccccccccCCcce-----------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           38 SSLGMCKKCGDVGM-----------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        38 ~sL~mCk~Cggl~~-----------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      +....|++|+|.++           +.|+.|+|+|.+..                         -+|+.|.|+|..
T Consensus       181 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~~  231 (389)
T PRK14295        181 TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD-------------------------DPCLVCKGSGRA  231 (389)
T ss_pred             CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec-------------------------cCCCCCCCCceE
Confidence            34678999999876           47999999998742                         258888888864

>PRK14278 chaperone protein DnaJ; Provisional

Probab=95.06  E-value=0.021  Score=47.60  Aligned_cols=39  Identities=31%  Similarity=0.819  Sum_probs=30.0

Q ss_pred             ccccccccCCcce---------------EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGM---------------IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~---------------vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      .-..|+.|+|.++               ..|+.|.|+|.+..                         -+|+.|.|+|..
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  208 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-------------------------DPCHECAGDGRV  208 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-------------------------CCCCCCCCceeE
Confidence            4567999999875               36999999998632                         259999998864

>PRK14297 chaperone protein DnaJ; Provisional

Probab=95.05  E-value=0.02  Score=47.48  Aligned_cols=25  Identities=40%  Similarity=1.004  Sum_probs=20.5

Q ss_pred             cccccccCCcceE---------------EcCCCccceeee
Q 033690           40 LGMCKKCGDVGMI---------------ACSRCKGMGLIK   64 (113)
Q Consensus        40 L~mCk~Cggl~~v---------------aCsrCKGtG~Ik   64 (113)
                      ...|+.|+|.+++               .|+.|.|+|.+.
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  204 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI  204 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence            4679999999865               699999999774

>PRK14281 chaperone protein DnaJ; Provisional

Probab=94.85  E-value=0.027  Score=47.18  Aligned_cols=39  Identities=31%  Similarity=0.731  Sum_probs=30.4

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++               .|+.|+|+|.+..                         -+|+.|.|+|..
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~g~v  231 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK-------------------------DRCPACYGEGIK  231 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC-------------------------CCCCCCCCCccE
Confidence            45689999998854               6999999998742                         258888888864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=94.77  E-value=0.024  Score=47.04  Aligned_cols=26  Identities=31%  Similarity=0.786  Sum_probs=20.6

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeee
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIK   64 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik   64 (113)
                      ....|+.|+|.+++               .|+.|+|+|.+.
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  210 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII  210 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence            35679999998776               699999998763

>PRK14291 chaperone protein DnaJ; Provisional

Probab=94.64  E-value=0.03  Score=46.58  Aligned_cols=38  Identities=42%  Similarity=1.026  Sum_probs=30.1

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|++|+|.+++           .|+.|+|+|.++                          -+|++|.|+|..
T Consensus       172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------------------------~~C~~C~G~g~v  220 (382)
T PRK14291        172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLR--------------------------EPCSKCNGRGLV  220 (382)
T ss_pred             CCccCCCCCCceEEEEecceEEEEecCCCCCCceEEc--------------------------cCCCCCCCCceE
Confidence            35679999999875           799999999531                          259999998865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=94.64  E-value=0.03  Score=46.40  Aligned_cols=24  Identities=33%  Similarity=1.010  Sum_probs=18.3

Q ss_pred             cccccccCCcceE---------------EcCCCccceee
Q 033690           40 LGMCKKCGDVGMI---------------ACSRCKGMGLI   63 (113)
Q Consensus        40 L~mCk~Cggl~~v---------------aCsrCKGtG~I   63 (113)
                      ...|+.|+|.+++               .|+.|.|+|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  198 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV  198 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE
Confidence            3468888888864               48888888876

>PRK14283 chaperone protein DnaJ; Provisional

Probab=94.27  E-value=0.039  Score=45.78  Aligned_cols=24  Identities=38%  Similarity=1.059  Sum_probs=19.3

Q ss_pred             cccccccCCcceE---------------EcCCCccceee
Q 033690           40 LGMCKKCGDVGMI---------------ACSRCKGMGLI   63 (113)
Q Consensus        40 L~mCk~Cggl~~v---------------aCsrCKGtG~I   63 (113)
                      ...|+.|+|.+++               .|+.|+|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  201 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI  201 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence            4679999998775               48889888876

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=93.94  E-value=0.038  Score=43.34  Aligned_cols=15  Identities=47%  Similarity=1.105  Sum_probs=9.3

Q ss_pred             eEEcCCCccceeeec
Q 033690           51 MIACSRCKGMGLIKS   65 (113)
Q Consensus        51 ~vaCsrCKGtG~Ik~   65 (113)
                      ...|++|.|+|.|-.
T Consensus        99 ~~~C~~C~G~G~~i~  113 (186)
T TIGR02642        99 SCKCPRCRGTGLIQR  113 (186)
T ss_pred             CCcCCCCCCeeEEec
Confidence            456677777666543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=93.38  E-value=0.068  Score=44.45  Aligned_cols=26  Identities=35%  Similarity=0.914  Sum_probs=20.4

Q ss_pred             ccccccccCCcceE---------------EcCCCccceeee
Q 033690           39 SLGMCKKCGDVGMI---------------ACSRCKGMGLIK   64 (113)
Q Consensus        39 sL~mCk~Cggl~~v---------------aCsrCKGtG~Ik   64 (113)
                      ....|+.|+|.+++               .|+.|.|+|.+.
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  194 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII  194 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence            45679999998764               699999988763

>PRK14292 chaperone protein DnaJ; Provisional

Probab=93.37  E-value=0.072  Score=43.94  Aligned_cols=38  Identities=34%  Similarity=0.897  Sum_probs=29.1

Q ss_pred             cccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           40 LGMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        40 L~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|+.|+|.+++               .|+.|.|+|.+.                         .-+|++|.|+|..
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------------CCCCCCCCCceEE
Confidence            4679999998765               499999998762                         2358888888864

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=93.15  E-value=0.051  Score=50.91  Aligned_cols=34  Identities=32%  Similarity=0.800  Sum_probs=23.7

Q ss_pred             EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690           52 IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH  101 (113)
Q Consensus        52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~  101 (113)
                      -.|+.|+|.|.|+.+-    .++.|+|            ++|+.|+|+..
T Consensus       739 G~C~~C~G~G~~~~~~----~f~~~~~------------~~C~~C~G~R~  772 (943)
T PRK00349        739 GRCEACQGDGVIKIEM----HFLPDVY------------VPCDVCKGKRY  772 (943)
T ss_pred             CCCCcccccceEEEEe----ccCCCcc------------ccCccccCccc
Confidence            3477788888888553    3455654            58999998864

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=93.10  E-value=0.055  Score=50.62  Aligned_cols=33  Identities=30%  Similarity=0.820  Sum_probs=22.4

Q ss_pred             EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690           53 ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH  101 (113)
Q Consensus        53 aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~  101 (113)
                      .|+.|||.|.|+.+    ..+++|+            .++|+.|+|+..
T Consensus       738 ~C~~C~G~G~~~~~----~~f~~~~------------~~~C~~C~G~R~  770 (924)
T TIGR00630       738 RCEACQGDGVIKIE----MHFLPDV------------YVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCccceEEEEE----ccCCCCc------------ccCCCCcCCcee
Confidence            46777777777754    2345554            568999999864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=0.082  Score=46.08  Aligned_cols=60  Identities=27%  Similarity=0.564  Sum_probs=36.1

Q ss_pred             cccccccccCCcc--------eEEcCCCccceeeecCCccccccccccCC-CCCccccccceeeccCCCCccceeCCCCC
Q 033690           38 SSLGMCKKCGDVG--------MIACSRCKGMGLIKSNGLFGFSIMDELYP-PLDGAESQMKSIGCSKCKGRGHFCCPGCS  108 (113)
Q Consensus        38 ~sL~mCk~Cggl~--------~vaCsrCKGtG~Ik~gg~f~f~~~ddiye-s~g~~~~~~~~v~C~kCqgkG~~~CP~Cs  108 (113)
                      |--..|..|.+-|        ++-|+.|-|  .++. +.-+    |||-. =.|     .-..+|+.|||+|..+|..|+
T Consensus       196 RG~~vc~gc~g~G~~~y~~~~~m~c~sc~G--~~~~-k~gt----~~~C~~C~G-----~G~~~C~tC~grG~k~C~TC~  263 (406)
T KOG2813|consen  196 RGAMVCHGCSGSGSNSYGIGTPMHCMSCTG--VPPP-KIGT----HDLCYMCHG-----RGIKECHTCKGRGKKPCTTCS  263 (406)
T ss_pred             CCceeccCcCCCCccccccCcceecccccC--CCCC-CCCc----cchhhhccC-----CCcccCCcccCCCCccccccc
Confidence            3345789999998        999999988  2211 1111    22211 011     114568888888888888886


Q ss_pred             C
Q 033690          109 N  109 (113)
Q Consensus       109 k  109 (113)
                      .
T Consensus       264 g  264 (406)
T KOG2813|consen  264 G  264 (406)
T ss_pred             C
Confidence            4

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.88  E-value=0.14  Score=43.56  Aligned_cols=58  Identities=29%  Similarity=0.725  Sum_probs=38.8

Q ss_pred             ccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce-----eCCCCCCC
Q 033690           41 GMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF-----CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~-----~CP~Csk~  110 (113)
                      -.|.+|.+.+     .-.|+.|.|+|.-..--..+=+|            ..+-+..|.+|.|.|..     .||.|.+.
T Consensus       128 ~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~------------~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~  195 (337)
T KOG0712|consen  128 FICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGM------------VQSPQLVCDSCNGSGETISLKDRCKTCSGA  195 (337)
T ss_pred             ccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccc------------cccceeEeccCCCccccccccccCcccccc
Confidence            3566666543     22488888888664433333222            33447889999999999     99999764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=89.55  E-value=0.2  Score=50.27  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=26.6

Q ss_pred             EEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc
Q 033690           52 IACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH  101 (113)
Q Consensus        52 vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~  101 (113)
                      -.|+.|||.|.|+.+=    .||+|+            .++|+.|+|+.+
T Consensus      1608 GrC~~C~G~G~i~i~m----~fl~dv------------~~~C~~C~G~R~ 1641 (1809)
T PRK00635       1608 GQCSDCWGLGYQWIDR----AFYALE------------KRPCPTCSGFRI 1641 (1809)
T ss_pred             CCCCCCccCceEEEec----ccCCCc------------ccCCCCCCCcCC
Confidence            3588899999998773    467888            458999999865

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=89.51  E-value=0.19  Score=46.52  Aligned_cols=38  Identities=29%  Similarity=0.627  Sum_probs=25.9

Q ss_pred             hcccchhhHHhhhhhcccccccccCCcceE----EcCCCccceeeec
Q 033690           23 IAAPKLDAFFSASQRSSLGMCKKCGDVGMI----ACSRCKGMGLIKS   65 (113)
Q Consensus        23 iaa~kvd~fi~~sqr~sL~mCk~Cggl~~v----aCsrCKGtG~Ik~   65 (113)
                      ++-.-||.|.+-     -.-|++|.+.|.|    .|+.|-|+|.|-.
T Consensus        41 ~~~~~~D~~~~~-----~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107          41 LSRETVDLFASF-----EIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             hhhccccccccC-----CCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            344456666431     3578888888876    5888888888743

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=85.99  E-value=0.43  Score=39.10  Aligned_cols=40  Identities=18%  Similarity=0.309  Sum_probs=27.0

Q ss_pred             chhhHHhhhhhccccccc---ccCCcceEEcCCCccceeeecC
Q 033690           27 KLDAFFSASQRSSLGMCK---KCGDVGMIACSRCKGMGLIKSN   66 (113)
Q Consensus        27 kvd~fi~~sqr~sL~mCk---~Cggl~~vaCsrCKGtG~Ik~g   66 (113)
                      |-|...+..-|++..+|-   +-.|..-+.||.|+|+|+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~py~e~~g~~~vtCPTCqGtGrIP~e   53 (238)
T PF07092_consen   11 KAASYLSERGSKEDISSFPYVEFTGRDSVTCPTCQGTGRIPRE   53 (238)
T ss_pred             cchhhhccCCcccccccCccccccCCCCCcCCCCcCCccCCcc
Confidence            334444444455554444   4567788999999999999776

The function of this family is unknown.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=84.57  E-value=0.82  Score=26.95  Aligned_cols=16  Identities=19%  Similarity=0.569  Sum_probs=11.3

Q ss_pred             eEEcCCCccceeeecC
Q 033690           51 MIACSRCKGMGLIKSN   66 (113)
Q Consensus        51 ~vaCsrCKGtG~Ik~g   66 (113)
                      .|.||.|...-+|...
T Consensus         2 ~i~CP~C~~~f~v~~~   17 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDD   17 (37)
T ss_pred             EEECCCCCceEEcCHH
Confidence            4788888877666544

>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12

Probab=83.46  E-value=0.63  Score=34.91  Aligned_cols=73  Identities=21%  Similarity=0.469  Sum_probs=43.0

Q ss_pred             ccccccccCCc-------ceEEcCCCccceeeecC--CccccccccccCCCCCccc--------cccceeeccCCCCcc-
Q 033690           39 SLGMCKKCGDV-------GMIACSRCKGMGLIKSN--GLFGFSIMDELYPPLDGAE--------SQMKSIGCSKCKGRG-  100 (113)
Q Consensus        39 sL~mCk~Cggl-------~~vaCsrCKGtG~Ik~g--g~f~f~~~ddiyes~g~~~--------~~~~~v~C~kCqgkG-  100 (113)
                      +|.-|..||.+       ..+.|.+||-.=.++.-  --..+..+.+.|.+.-.+.        .+.=..+||+|+--. 
T Consensus         6 ~~~FC~~CG~ll~~~~~~~~~~C~~Ck~~~~v~~~~~~~v~~~~~~~~~~~A~~~~ve~~~~~~ga~I~~kCpkCghe~m   85 (116)
T KOG2907|consen    6 DLDFCSDCGSLLEEPSAQSTVLCIRCKIEYPVSQFSGLVVETKSLFDEFTSALAEKVENESSADGAVIKHKCPKCGHEEM   85 (116)
T ss_pred             CcchhhhhhhhcccccccCceEeccccccCCHHHhCCeeEEEEEeecccchhhhhhhcccccccccchhccCcccCCchh
Confidence            88999999986       46779999976544221  1111112223333322211        233345699998654 


Q ss_pred             ----------------ceeCCCCCCCC
Q 033690          101 ----------------HFCCPGCSNKP  111 (113)
Q Consensus       101 ----------------~~~CP~Csk~~  111 (113)
                                      .+.||+|+.|.
T Consensus        86 ~Y~T~QlRSADEGQTVFYTC~kC~~k~  112 (116)
T KOG2907|consen   86 SYHTLQLRSADEGQTVFYTCPKCKYKF  112 (116)
T ss_pred             hhhhhhcccccCCceEEEEcCccceee
Confidence                            47899998774

2/RPA12 [Transcription]

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=82.81  E-value=0.87  Score=25.64  Aligned_cols=10  Identities=40%  Similarity=0.926  Sum_probs=7.2

Q ss_pred             cceeCCCCCC
Q 033690          100 GHFCCPGCSN  109 (113)
Q Consensus       100 G~~~CP~Csk  109 (113)
                      -.|.||+|++
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            3688888874

It is likely to bind zinc via its four well-conserved cysteine residues.

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=82.20  E-value=2.8  Score=28.52  Aligned_cols=22  Identities=32%  Similarity=0.815  Sum_probs=15.2

Q ss_pred             cccccCCc-----ceEEcCCCccceee
Q 033690           42 MCKKCGDV-----GMIACSRCKGMGLI   63 (113)
Q Consensus        42 mCk~Cggl-----~~vaCsrCKGtG~I   63 (113)
                      .|++||++     ..+.|+.|.-.-.+
T Consensus         2 fC~~Cg~~l~~~~~~~~C~~C~~~~~~   28 (104)
T TIGR01384         2 FCPKCGSLMTPKNGVYVCPSCGYEKEK   28 (104)
T ss_pred             CCcccCcccccCCCeEECcCCCCcccc
Confidence            47777764     46789888866444

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=81.75  E-value=0.66  Score=38.01  Aligned_cols=16  Identities=31%  Similarity=0.823  Sum_probs=13.5

Q ss_pred             cceeeccCCCCcccee
Q 033690           88 MKSIGCSKCKGRGHFC  103 (113)
Q Consensus        88 ~~~v~C~kCqgkG~~~  103 (113)
                      ...++||.|||.|++|
T Consensus        36 ~~~vtCPTCqGtGrIP   51 (238)
T PF07092_consen   36 RDSVTCPTCQGTGRIP   51 (238)
T ss_pred             CCCCcCCCCcCCccCC
Confidence            4678999999999986

The function of this family is unknown.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=81.31  E-value=1.4  Score=26.02  Aligned_cols=32  Identities=28%  Similarity=0.672  Sum_probs=19.7

Q ss_pred             eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCC
Q 033690           51 MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKG   98 (113)
Q Consensus        51 ~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqg   98 (113)
                      .|.|++|+..=.|...          ...      ++...+.|++|+-
T Consensus         2 ~i~Cp~C~~~y~i~d~----------~ip------~~g~~v~C~~C~~   33 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDE----------KIP------PKGRKVRCSKCGH   33 (36)
T ss_pred             EEECCCCCCEEeCCHH----------HCC------CCCcEEECCCCCC
Confidence            4788999876655443          222      3334778888863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.34
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.3
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.1
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.25
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.14
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	96.07
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	94.8
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	94.42
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	93.61
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	93.13
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	80.08

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=4.6e-07  Score=61.26  Aligned_cols=54  Identities=31%  Similarity=0.783  Sum_probs=42.8

Q ss_pred             ccccccccCCcc------eEEcCCCccceeeecC-CccccccccccCCCCCccccccceeeccCCCCccce---eCCCCC
Q 033690           39 SLGMCKKCGDVG------MIACSRCKGMGLIKSN-GLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCS  108 (113)
Q Consensus        39 sL~mCk~Cggl~------~vaCsrCKGtG~Ik~g-g~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Cs  108 (113)
                      ....|+.|+|.+      ...|+.|+|+|.+... |+|.                  ...+|+.|+|+|.+   +|+.|.
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~------------------~~~~C~~C~G~G~~i~~~C~~C~   88 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFV------------------MRSTCRRCGGRGSIIISPCVVCR   88 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEE------------------EEEECSSSSSSSEECSSCCSSSS
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEE------------------EEEECCcCCCcceECCCcCCCCC
Confidence            347899999987      5899999999988543 3321                  26789999999998   899996


Q ss_pred             CC
Q 033690          109 NK  110 (113)
Q Consensus       109 k~  110 (113)
                      ..
T Consensus        89 G~   90 (104)
T 2ctt_A           89 GA   90 (104)
T ss_dssp             SC
T ss_pred             Ce
Confidence            53

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.30  E-value=3e-07  Score=58.76  Aligned_cols=54  Identities=31%  Similarity=0.864  Sum_probs=42.8

Q ss_pred             ccccccccCCcce------EEcCCCccceeeec-CCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCC
Q 033690           39 SLGMCKKCGDVGM------IACSRCKGMGLIKS-NGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCS  108 (113)
Q Consensus        39 sL~mCk~Cggl~~------vaCsrCKGtG~Ik~-gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Cs  108 (113)
                      ....|++|++.+.      ..|+.|+|+|.+.. .|.|.                  ...+|++|+|.|..   +|+.|.
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~------------------~~~~C~~C~G~G~~~~~~C~~C~   71 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFA------------------VQQTCPHCQGRGTLIKDPCNKCH   71 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEE------------------EEEECTTTTTSSEECSSBCGGGT
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCE------------------EeeECcCCCCccEECCCcCCCCC
Confidence            3468999999985      68999999999854 23321                  25789999999999   999996


Q ss_pred             CC
Q 033690          109 NK  110 (113)
Q Consensus       109 k~  110 (113)
                      ..
T Consensus        72 G~   73 (79)
T 1exk_A           72 GH   73 (79)
T ss_dssp             TS
T ss_pred             Ce
Confidence            54

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.10  E-value=1e-06  Score=67.79  Aligned_cols=58  Identities=29%  Similarity=0.697  Sum_probs=43.8

Q ss_pred             cccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcc-----ceeCCCCCC
Q 033690           40 LGMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRG-----HFCCPGCSN  109 (113)
Q Consensus        40 L~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG-----~~~CP~Csk  109 (113)
                      ...|++|++.+     ...|+.|+|+|.+...-..++ |+            .+.+.+|++|+|+|     .-+|+.|..
T Consensus        38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~------------~~~~~~C~~C~G~G~~i~~~~~C~~C~G  104 (248)
T 1nlt_A           38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MI------------QRFQTECDVCHGTGDIIDPKDRCKSCNG  104 (248)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EE------------EEEECSCTTCSSSSSCCCTTSBCSSSTT
T ss_pred             EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eE------------EEEEEcCCCCCCcCEEeccCCCCcccCC
Confidence            36899999988     578999999999854433333 21            12367899999999     677999965


Q ss_pred             C
Q 033690          110 K  110 (113)
Q Consensus       110 ~  110 (113)
                      .
T Consensus       105 ~  105 (248)
T 1nlt_A          105 K  105 (248)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.25  E-value=0.0002  Score=45.42  Aligned_cols=39  Identities=31%  Similarity=0.819  Sum_probs=32.3

Q ss_pred             cccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcccee
Q 033690           40 LGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFC  103 (113)
Q Consensus        40 L~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~  103 (113)
                      ...|+.|+|.+.+           .|+.|+|+|.+.+                         .+|++|.|.|...
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------------~~C~~C~G~G~~~   77 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-------------------------DPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-------------------------SBCGGGTTSSEEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC-------------------------CcCCCCCCeEEEe
Confidence            4589999999965           7999999998742                         3799999999763

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.14  E-value=0.00035  Score=46.95  Aligned_cols=40  Identities=38%  Similarity=0.831  Sum_probs=31.9

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCcccee
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHFC  103 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~~  103 (113)
                      ....|+.|++.+++           .|+.|.|+|.+.+                         .+|++|.|.|...
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-------------------------~~C~~C~G~G~v~   94 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII-------------------------SPCVVCRGAGQAK   94 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS-------------------------SCCSSSSSCSEEC
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC-------------------------CcCCCCCCeeEEE
Confidence            34679999999865           7999999998642                         3799999999763

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=96.07  E-value=0.0028  Score=48.62  Aligned_cols=39  Identities=28%  Similarity=0.688  Sum_probs=27.9

Q ss_pred             ccccccCCcceE---------------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           41 GMCKKCGDVGMI---------------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        41 ~mCk~Cggl~~v---------------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ..|+.|+|.+.+               .|+.|.|+|.+-..                       ..+|++|.|+|..
T Consensus        55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~-----------------------~~~C~~C~G~g~~  108 (248)
T 1nlt_A           55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP-----------------------KDRCKSCNGKKVE  108 (248)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT-----------------------TSBCSSSTTSCEE
T ss_pred             ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc-----------------------CCCCcccCCCceE
Confidence            678888887754               58888888866421                       2368888888764

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=94.80  E-value=0.017  Score=36.04  Aligned_cols=26  Identities=31%  Similarity=0.823  Sum_probs=21.5

Q ss_pred             ccccccCCcce---EEcCCCccceeeecC
Q 033690           41 GMCKKCGDVGM---IACSRCKGMGLIKSN   66 (113)
Q Consensus        41 ~mCk~Cggl~~---vaCsrCKGtG~Ik~g   66 (113)
                      ..|++|+|.+.   -.|+.|+|.|.|+..
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            46999999998   469999999998554

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=94.42  E-value=0.027  Score=35.11  Aligned_cols=24  Identities=42%  Similarity=1.009  Sum_probs=14.6

Q ss_pred             cccccCCcceE---EcCCCccceeeec
Q 033690           42 MCKKCGDVGMI---ACSRCKGMGLIKS   65 (113)
Q Consensus        42 mCk~Cggl~~v---aCsrCKGtG~Ik~   65 (113)
                      .|+.|+|.+.+   .|+.|+|.|+|..
T Consensus        11 ~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A           11 ACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             ECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cCCCCcceeccCCCCCccCCCCccEEE
Confidence            46666666543   4666666666654

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=93.61  E-value=0.043  Score=34.20  Aligned_cols=27  Identities=33%  Similarity=0.917  Sum_probs=22.7

Q ss_pred             eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           51 MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        51 ~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ...|+.|.|+|.+.                         ..+|++|.|.|..
T Consensus         9 ~~~C~~C~GsG~~~-------------------------~~~C~~C~G~G~v   35 (53)
T 2bx9_A            9 EVACPKCERAGEIE-------------------------GTPCPACSGKGVI   35 (53)
T ss_dssp             EEECTTTTTSSEET-------------------------TEECTTTTTSSEE
T ss_pred             cccCCCCcceeccC-------------------------CCCCccCCCCccE
Confidence            56899999999872                         2589999999975

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=93.13  E-value=0.039  Score=34.41  Aligned_cols=12  Identities=33%  Similarity=0.872  Sum_probs=7.2

Q ss_pred             EEcCCCccceee
Q 033690           52 IACSRCKGMGLI   63 (113)
Q Consensus        52 vaCsrCKGtG~I   63 (113)
                      ..|+.|.|+|.+
T Consensus        10 ~~C~~C~GsG~~   21 (53)
T 3lcz_A           10 TTCPNCNGSGRE   21 (53)
T ss_dssp             EECTTTTTSCEE
T ss_pred             ccCcCCcccccC
Confidence            456666666654

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=80.08  E-value=0.76  Score=27.05  Aligned_cols=11  Identities=36%  Similarity=1.026  Sum_probs=6.8

Q ss_pred             ccceeCCCCCC
Q 033690           99 RGHFCCPGCSN  109 (113)
Q Consensus        99 kG~~~CP~Csk  109 (113)
                      .|.+.|+.|+-
T Consensus        22 ~gelvC~~CG~   32 (50)
T 1pft_A           22 RGEIVCAKCGY   32 (50)
T ss_dssp             TTEEEESSSCC
T ss_pred             CCeEECcccCC
Confidence            35666777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.4
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.29
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.94
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.72
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	80.06

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=5.7e-08  Score=61.81  Aligned_cols=57  Identities=32%  Similarity=0.735  Sum_probs=42.4

Q ss_pred             ccccccCCcc-----eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce-----eCCCCCCC
Q 033690           41 GMCKKCGDVG-----MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF-----CCPGCSNK  110 (113)
Q Consensus        41 ~mCk~Cggl~-----~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~-----~CP~Csk~  110 (113)
                      ..|+.|.+.+     ...|+.|.|+|.+...-..+|.+             .+...+|++|+|+|.+     +|+.|...
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~-------------~~~~~~C~~C~G~G~~i~~~~~C~~C~G~   69 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMI-------------QRFQTECDVCHGTGDIIDPKDRCKSCNGK   69 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEE-------------EEEECSCTTCSSSSSCCCTTSBCSSSTTS
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcE-------------EEEEEECccCccceEEeCCCCCCCCCCCe
Confidence            5799999988     56799999999987654444321             1125689999999976     79999643

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.6e-07  Score=60.06  Aligned_cols=55  Identities=31%  Similarity=0.786  Sum_probs=41.8

Q ss_pred             ccccccccCCcc------eEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce---eCCCCCC
Q 033690           39 SLGMCKKCGDVG------MIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF---CCPGCSN  109 (113)
Q Consensus        39 sL~mCk~Cggl~------~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~---~CP~Csk  109 (113)
                      .+..|+.|++.+      +..|+.|+|+|.|.....+ |                +.+.+|++|+|+|.+   +|++|..
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~-~----------------~~~~~C~~C~G~G~~i~~~C~~C~G   72 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGF-F----------------AVQQTCPHCQGRGTLIKDPCNKCHG   72 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETT-E----------------EEEEECTTTTTSSEECSSBCGGGTT
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEEEeccc-c----------------eeeEECcccCcceeECCCCCCCCCC
Confidence            457899999865      5789999999998643211 1                125689999999976   8999975


Q ss_pred             C
Q 033690          110 K  110 (113)
Q Consensus       110 ~  110 (113)
                      +
T Consensus        73 ~   73 (79)
T d1exka_          73 H   73 (79)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00025  Score=44.64  Aligned_cols=39  Identities=31%  Similarity=0.847  Sum_probs=30.9

Q ss_pred             ccccccccCCcceE-----------EcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccce
Q 033690           39 SLGMCKKCGDVGMI-----------ACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGHF  102 (113)
Q Consensus        39 sL~mCk~Cggl~~v-----------aCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~~  102 (113)
                      ....|+.|+|.+++           .|+.|+|+|.|-.                         -+|++|.|+|+.
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~-------------------------~~C~~C~G~G~v   76 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-------------------------DPCNKCHGHGRV   76 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-------------------------SBCGGGTTSSEE
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeECC-------------------------CCCCCCCCceEe
Confidence            45679999998876           4999999998732                         269999999875

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00066  Score=42.39  Aligned_cols=38  Identities=32%  Similarity=0.707  Sum_probs=28.3

Q ss_pred             ceEEcCCCccceeeecCCccccccccccCCCCCccccccceeeccCCCCccc---------------eeCCCCCCC
Q 033690           50 GMIACSRCKGMGLIKSNGLFGFSIMDELYPPLDGAESQMKSIGCSKCKGRGH---------------FCCPGCSNK  110 (113)
Q Consensus        50 ~~vaCsrCKGtG~Ik~gg~f~f~~~ddiyes~g~~~~~~~~v~C~kCqgkG~---------------~~CP~Csk~  110 (113)
                      +.|.|+.|+|+|... + .                     ...|+.|+|+|.               .+||.|..+
T Consensus         1 r~v~C~~C~G~G~~~-~-~---------------------~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~   53 (74)
T d1nlta3           1 KQILCKECEGRGGKK-G-A---------------------VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGT   53 (74)
T ss_dssp             EEEECTTTTTCSBST-T-T---------------------CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSS
T ss_pred             CccCCcCCcccccCC-C-C---------------------CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccc
Confidence            578999999999532 1 1                     236999999995               359999644

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.06  E-value=0.36  Score=27.64  Aligned_cols=20  Identities=25%  Similarity=0.881  Sum_probs=15.7

Q ss_pred             eeeccCCCCc------cceeCCCCCC
Q 033690           90 SIGCSKCKGR------GHFCCPGCSN  109 (113)
Q Consensus        90 ~v~C~kCqgk------G~~~CP~Csk  109 (113)
                      +-+||+|++-      +.|-||+|+-
T Consensus         3 lP~CP~C~seytYedg~l~vCPeC~h   28 (38)
T d2akla2           3 LPPCPQCNSEYTYEDGALLVCPECAH   28 (38)
T ss_dssp             SCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred             CCcCCCCCCcceEcCCCEEECCcccC
Confidence            4579999874      7889999963