Citrus Sinensis ID: 033692

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQYGKPT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEEEcHHHHHHcccccHHHHHHHHHHHHHHHHEHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MGFPSEVRDIFAsrrsnnspliaspaedlkAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRkipwakanlnyTGQALIISAVSIASYFITVDKTILECARRnaqygkpt
Flexible Loop (DISEMBL)
MGFPSEVRDIFasrrsnnspliaspAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECArrnaqygkpt
Low Complexity Region (SEG)
MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQYGKPT
Disordered region (IsUnstruct)
**********************************NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECAR*********
Disordered Region (DISOPRED)
***************************************EGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTIL*************
Disordered Region (DISEMBL)
MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARR********
Disordered Region (DISPRO)
****SEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQYGKPT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q02921	105	Early nodulin-93 OS=Glyci	no	no	0.823	0.885	0.52	3e-14

>sp|Q02921|NO93_SOYBN Early nodulin-93 OS=Glycine max PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 7/100 (7%)

Query: 18  NSPL----IASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKAN 73
           NSPL    +AS   D K   A  C  EGV AG KAA V  V +A+PTL +VR +PWA+AN
Sbjct: 5   NSPLERPSLAS--LDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARAN 62

Query: 74  LNYTGQALIISAVSIASYFITVDKTILECARRNAQYGKPT 113
           LN+T QALIIS  + A+YFI  DKT+L  AR+N+ + +P+
Sbjct: 63  LNHTAQALIISTATAAAYFIVADKTVLATARKNS-FNQPS 101

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
449461339	116	PREDICTED: early nodulin-93-like [Cucumi	0.938	0.913	0.703	9e-35
118482606	129	unknown [Populus trichocarpa]	0.982	0.860	0.629	2e-34
357436345	120	Enod93 protein [Medicago truncatula] gi|	0.938	0.883	0.694	2e-34
388497518	120	unknown [Lotus japonicus]	0.938	0.883	0.678	3e-33
388495820	120	unknown [Lotus japonicus]	0.946	0.891	0.675	1e-32
351723655	116	uncharacterized protein LOC100500499 [Gl	0.938	0.913	0.657	5e-32
6688816	117	Enod93 protein [Medicago sativa subsp. x	0.938	0.905	0.626	5e-31
388492960	122	unknown [Medicago truncatula]	0.938	0.868	0.607	2e-29
388491784	121	unknown [Medicago truncatula]	0.929	0.867	0.598	3e-27
255568960	128	Early nodulin, putative [Ricinus communi	1.0	0.882	0.609	7e-27

>gi|449461339|ref|XP_004148399.1| PREDICTED: early nodulin-93-like [Cucumis sativus] gi|449507240|ref|XP_004162973.1| PREDICTED: early nodulin-93-like [Cucumis sativus]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 85/108 (78%), Gaps = 2/108 (1%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD +  RR  NS +I SPAED K   A  C QEGVRAG K A++ CV +AVPT
Sbjct: 1   MGIPSELRDSWVHRR--NSFVIPSPAEDRKIANAKRCTQEGVRAGFKNASIACVASAVPT 58

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
           LVAVR +PWAKANLNYT QALIISA SIA+YFIT DKTILECARRN+Q
Sbjct: 59  LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQ 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482606|gb|ABK93223.1| unknown [Populus trichocarpa]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 87/127 (68%), Gaps = 16/127 (12%)

Query: 1   MGFPSEVRDIFASRRSNN----------------SPLIASPAEDLKAKAANDCVQEGVRA 44
           MG PSE+R  +A +   N                S LIASPAE+ K   A  C QEGVRA
Sbjct: 1   MGIPSELRHYWAQKTLTNQNLNHNGYDINNCNGRSLLIASPAEEQKILQARLCTQEGVRA 60

Query: 45  GLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECAR 104
           G+KAA + CV TAVPTL AVR IPWAKANLNYT QALIISA SIA+YFITVDKTILECAR
Sbjct: 61  GVKAAVITCVATAVPTLTAVRVIPWAKANLNYTAQALIISAASIAAYFITVDKTILECAR 120

Query: 105 RNAQYGK 111
           RNA Y K
Sbjct: 121 RNAHYNK 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436345|ref|XP_003588448.1| Enod93 protein [Medicago truncatula] gi|355477496|gb|AES58699.1| Enod93 protein [Medicago truncatula] gi|388508604|gb|AFK42368.1| unknown [Medicago truncatula]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD + S+R  NS +IASP E+ K      C  EGVRAG KAAAV CVV+ VPT
Sbjct: 1   MGIPSELRDAWVSKR--NSFIIASPDEERKILRTKKCTNEGVRAGFKAAAVACVVSTVPT 58

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
           L AVR +PWAKANLNYT QALIISA SIA+YFIT DKTILECAR+NAQ
Sbjct: 59  LAAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARKNAQ 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497518|gb|AFK36825.1| unknown [Lotus japonicus]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 85/109 (77%), Gaps = 3/109 (2%)

Query: 1   MGFPSEVRDIFASRRSNNSP-LIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVP 59
           MG PSE+RD++ S+    +P LIASPAE+ K   +  C  EGVRAGLKAA + CV +AVP
Sbjct: 1   MGIPSELRDLWVSK--TKTPFLIASPAEESKLLRSKQCTNEGVRAGLKAATIACVASAVP 58

Query: 60  TLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
           TL AVR IPWAKANLNYT QALIISA SIASYFI  DKTILECAR+NA+
Sbjct: 59  TLAAVRMIPWAKANLNYTAQALIISAASIASYFIVADKTILECARKNAR 107

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495820|gb|AFK35976.1| unknown [Lotus japonicus]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 83/108 (76%), Gaps = 1/108 (0%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD++ S+ S    LIASPAE+ K   +  C  EGVRAG KAA + CV +AVPT
Sbjct: 1   MGIPSELRDMWVSK-SKTPFLIASPAEESKLLRSKQCTNEGVRAGFKAATIACVSSAVPT 59

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
           L AVR IPWAKANLNYT QALIISA SIASYFI  DKTILECAR+NA+
Sbjct: 60  LAAVRIIPWAKANLNYTAQALIISAASIASYFIAADKTILECARKNAR 107

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723655|ref|NP_001235239.1| uncharacterized protein LOC100500499 [Glycine max] gi|255630482|gb|ACU15599.1| unknown [Glycine max]

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 82/108 (75%), Gaps = 2/108 (1%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD+    +     L+ASPAED K   +  C +EGVRAG KAA++  V +AVPT
Sbjct: 1   MGIPSELRDMLLPNK--KGVLVASPAEDRKTLRSKQCTREGVRAGFKAASIAGVASAVPT 58

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
           L AVR IPWAKANLNYT QALIISA SIASYFIT DKTILECAR+NA+
Sbjct: 59  LAAVRMIPWAKANLNYTAQALIISAASIASYFITADKTILECARKNAK 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6688816|emb|CAB65283.1| Enod93 protein [Medicago sativa subsp. x varia]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 82/107 (76%), Gaps = 1/107 (0%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD++ + + N S LIASPAE+ K   ++ C  EGVRAG KAA + CV + VPT
Sbjct: 1   MGIPSELRDMWIANK-NTSLLIASPAEEQKMLRSSQCTAEGVRAGFKAAGIGCVASTVPT 59

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 107
           LVAVR IPWAKANLNYT QALIISAVS+ S+F+  DKTIL CAR+ +
Sbjct: 60  LVAVRMIPWAKANLNYTAQALIISAVSVVSFFVAADKTILACARKQS 106

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492960|gb|AFK34546.1| unknown [Medicago truncatula]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD++ + + N S  IASPAE+ K   ++ C  EGVRAG KAA + CV +  PT
Sbjct: 1   MGIPSELRDMWIANK-NTSSQIASPAEEQKMLRSSQCTAEGVRAGFKAAGIGCVTSTGPT 59

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 107
           LVAVR IPWAKANLNYT QALIISAVS+AS+F+  DK IL CAR+ +
Sbjct: 60  LVAVRMIPWAKANLNYTAQALIISAVSVASFFVAADKIILACARKQS 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491784|gb|AFK33958.1| unknown [Medicago truncatula]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 2/107 (1%)

Query: 1   MGFPSEVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPT 60
           MG PSE+RD++ + + N S  IASPAE+ K   ++ C   GVRAG KAA + CV +  PT
Sbjct: 1   MGIPSELRDMWIANK-NTSLQIASPAEEQKMLRSSQCT-AGVRAGFKAAGIGCVTSTGPT 58

Query: 61  LVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 107
           LVAVR IPWAKANLNYT QALIISAVS+AS+F+  DK IL CAR+ +
Sbjct: 59  LVAVRMIPWAKANLNYTAQALIISAVSVASFFVAADKIILACARKQS 105

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568960|ref|XP_002525450.1| Early nodulin, putative [Ricinus communis] gi|223535263|gb|EEF36940.1| Early nodulin, putative [Ricinus communis]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 86/128 (67%), Gaps = 15/128 (11%)

Query: 1   MGFPSEVRDIFASRRSNN---------------SPLIASPAEDLKAKAANDCVQEGVRAG 45
           MG PSE+RD +A    N                S  I SPAED +   A  C QEGV+AG
Sbjct: 1   MGIPSEIRDYWAQTIKNKKKQISINNNNNNNNNSLWICSPAEDQRILEARRCTQEGVKAG 60

Query: 46  LKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARR 105
            KAAAV  V +A+PTLVAVR IPWAKANLNYT QALIISA SI++YFIT DKTILECARR
Sbjct: 61  AKAAAVAAVASAIPTLVAVRVIPWAKANLNYTAQALIISAASISAYFITADKTILECARR 120

Query: 106 NAQYGKPT 113
           NAQY K T
Sbjct: 121 NAQYDKTT 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2180632	115	AT5G25940 "AT5G25940" [Arabido	0.911	0.895	0.572	1.8e-23

TAIR|locus:2180632 AT5G25940 "AT5G25940" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 59/103 (57%), Positives = 69/103 (66%)

Query:     6 EVRDIFASRRSNNSPLIASPAEDLKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVR 65
             E R    +RR  N  +IASP E  K   A    Q G  AG KAAAV  V +A+PT+ AVR
Sbjct:     2 ENRSEMGNRRQQNLFVIASPDEIAKIHRAETSKQAGAIAGAKAAAVAAVASAIPTVAAVR 61

Query:    66 KIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNAQ 108
               PWAKANLNYT QALIIS+ SIA++FIT DKTIL+ ARRN +
Sbjct:    62 MFPWAKANLNYTAQALIISSASIAAFFITADKTILQGARRNTE 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       113   0.00091  102 3  11 22  0.43    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  109 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.92u 0.11s 11.03t   Elapsed:  00:00:01
  Total cpu time:  10.92u 0.11s 11.03t   Elapsed:  00:00:01
  Start:  Fri May 10 00:03:28 2013   End:  Fri May 10 00:03:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: JGI19621 hypothetical protein (69 aa) (Physcomitrella patens)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam03386	79	pfam03386, ENOD93, Early nodulin 93 ENOD93 protein	2e-30

>gnl|CDD|146167 pfam03386, ENOD93, Early nodulin 93 ENOD93 protein

 Score =  103 bits (258), Expect = 2e-30
 Identities = 46/78 (58%), Positives = 53/78 (67%)

Query: 30  KAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIA 89
           K   A  C  E V AG KAAAV  V +AVPTL +VR +PWAKANLN T QALIIS  +  
Sbjct: 2   KLARAKRCSHEAVIAGAKAAAVATVASAVPTLASVRMLPWAKANLNPTAQALIISTAAGM 61

Query: 90  SYFITVDKTILECARRNA 107
           +YFI  DKTIL  AR+N+
Sbjct: 62  AYFIAADKTILALARKNS 79

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PF03386	79	ENOD93: Early nodulin 93 ENOD93 protein; InterPro:	100.0

>PF03386 ENOD93: Early nodulin 93 ENOD93 protein; InterPro: IPR005050 The expression of early nodulin (ENOD) genes has been well characterised in several legume species

Probab=100.00  E-value=1.1e-49  Score=276.89  Aligned_cols=79  Identities=67%  Similarity=0.972  Sum_probs=78.2

Q ss_pred             HHHHHhhHhhHHHHHhhhhHHHHHHHhhhccchhhhhchhhhhhccCcchhhhhhhhhhceeeeeeehhHHHHHHHhhh
Q 033692           29 LKAKAANDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA  107 (113)
Q Consensus        29 ~k~~~ak~cs~Eg~~aG~KaA~va~vasAipTL~svRm~pWakaNlN~TaqALIIs~aa~aayFI~aDKtIL~~aRkns  107 (113)
                      ||++++|+|+|||+++|+|+|+|++++|+||||+||||+||+|+||||||||||||+++||+|||++|||||+|+||||
T Consensus         1 Qk~~~a~~cs~Egv~AG~KaA~va~vasAiptl~svR~~pWakanln~t~qAliIs~aa~~ayFI~aDKtIL~~aR~~s   79 (79)
T PF03386_consen    1 QKLAMAKRCSQEGVRAGAKAAAVATVASAIPTLASVRMLPWAKANLNYTAQALIISAAAGAAYFIVADKTILECARKNS   79 (79)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeeeeHHHHhcCCcccceeeeeehhhheeeeeccHHHHHHhhccC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999996

Based on their biochemical attributes and expression patterns, they are postulated to have roles in cell structure, in the control of nodule ontogeny by the degradation of Nod factor, and in carbon metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00