Citrus Sinensis ID: 033717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MEIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCRM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccHHccccHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccHHHcccccHHHHHHHHccccEEEHHHHcccccccccccccccccccccccccccccccccHHHEccc
Coil and Loop (DISEMBL)
MEIDMKKFCSLCLLLFAVSSVTAAAKEsykhgecdgsiaECGELAAEEFSMESETSKRVLAAAHkfispgalrrdapvcnggargdpysksclppqsnryqrgcaaykmcrm
Flexible Loop (DISEMBL)
MEIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFispgalrrdapVCNGGARGdpysksclppqsnryqrgcaAYKMCRM
Low Complexity Region (SEG)
MEIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCRM
Disordered region (IsUnstruct)
*****KKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGEL***************LAAAHKFIS********************************************
Disordered Region (DISOPRED)
****MKKFCSLCLLLFAVSSVT**************SIAECGELAA************VLAAAHKFISPGALRRDAPVCN**AR******************GCAAYKMCRM
Disordered Region (DISEMBL)
MEIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAE**********RVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCRM
Disordered Region (DISPRO)
*EIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCRM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
O23262	117	Protein RALF-like 32 OS=A	yes	no	0.839	0.803	0.446	2e-15
Q8L9P8	116	Protein RALF-like 33 OS=A	no	no	0.848	0.818	0.404	6e-10
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.651	0.608	0.423	1e-06
Q945T0	115	Rapid alkalinization fact	N/A	no	0.857	0.834	0.396	3e-06
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.625	0.636	0.4	3e-05
Q9LUS7	138	Rapid alkalinization fact	no	no	0.678	0.550	0.404	8e-05
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.875	0.867	0.305	9e-05

>sp|O23262|RLF32_ARATH Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 9/103 (8%)

Query: 11  LCLLLFAVSSVTAAAKESYKHGECDGSIAECGELA-AEEFS--MESETSKRVLAAAHKFI 67
           LCLLL  V+S  +++        C+GS+AEC  +   EE S  MES +S+R+       +
Sbjct: 17  LCLLLAHVTSKASSS------SLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKL 70

Query: 68  SPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
           S GALRR+ P C+GG RG+ YS  CLPP SN Y RGC+ +  C
Sbjct: 71  SYGALRRNQPACDGGKRGESYSTQCLPPPSNPYSRGCSKHYRC 113

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 14  LLFAVSSVTAAAKESYKHGECDGSIAECG-ELAAEEFSMESETSKRVLAAAHKFISPGAL 72
            LFA  +  ++        +C+G+IAEC    A EEF M+SE ++R+LA   K+IS GAL
Sbjct: 20  FLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGAL 78

Query: 73  RRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
           RR+   C+   RG  Y       Q+N Y RGC+A   CR
Sbjct: 79  RRNTVPCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 115

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 34  CDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCL 93
           C GSIAEC  + AEE  M+SE ++R+LA   K+IS  +L+R++  C+   RG  Y     
Sbjct: 47  CHGSIAEC--IGAEEEEMDSEINRRILATT-KYISYQSLKRNSVPCS--RRGASYYNCQN 101

Query: 94  PPQSNRYQRGCAAYKMCR 111
             Q+N Y RGC+    CR
Sbjct: 102 GAQANPYSRGCSKIARCR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 15/111 (13%)

Query: 11  LCLLLFAVSSVTAAAKESYKH---------GECDGSIAECGELAAEEFSMESETSKRVLA 61
           LC+L+ A     AAA +S  +         G C GSI EC     EEF ++SE+++R+LA
Sbjct: 9   LCVLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGEC-IAEEEEFELDSESNRRILA 67

Query: 62  AAHKFISPGALRRDAPVCNGGARGDPYSKSCLP-PQSNRYQRGCAAYKMCR 111
              K+IS GAL++++  C+   RG  Y  +C P  Q+N Y RGC+A   CR
Sbjct: 68  T-KKYISYGALQKNSVPCS--RRGASY-YNCKPGAQANPYSRGCSAITRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 36  GSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPP 95
           G I E GEL   ++ M+SET++R LAA   +IS GALR++   C+   RG  Y       
Sbjct: 36  GCIGEDGEL---DYLMDSETNRRQLAARRSYISYGALRKNNVPCS--RRGRSYYDCKKRK 90

Query: 96  QSNRYQRGCAAYKMC 110
           ++N Y+RGC+    C
Sbjct: 91  RANPYRRGCSVITHC 105

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 18/94 (19%)

Query: 33  ECDGSIAECGELAA---------------EEFSMESETSKRVLAAAHKFISPGALRRDAP 77
           EC G+IAEC   AA               EEF M+SE ++R+LA   ++IS GALRR+  
Sbjct: 46  ECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILAT-RRYISYGALRRNTI 104

Query: 78  VCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
            C+   RG  Y       Q+N Y RGC+A   CR
Sbjct: 105 PCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 136

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 8   FCSLCLLLFAVSSVTAAAKE---SYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAH 64
           F S  L++FA+  +  +A        +GE D  +     +  +E  M +E S+RVL A  
Sbjct: 2   FNSTALVIFAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQK 61

Query: 65  KFISPGALRRDAPVCN--GGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
           ++I    LRRD   C   G +  D     C   Q+N Y RGC     C
Sbjct: 62  RYIGYETLRRDMVPCQKPGASYYD-----CRSGQANSYSRGCDTITRC 104

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
224129192	112	predicted protein [Populus trichocarpa]	0.955	0.955	0.504	7e-20
255600723	91	RALFL33, putative [Ricinus communis] gi|	0.678	0.835	0.628	5e-18
388490538	113	unknown [Lotus japonicus]	0.669	0.663	0.6	5e-17
224129196	120	predicted protein [Populus trichocarpa]	0.794	0.741	0.527	6e-17
255559182	122	RALFL33, putative [Ricinus communis] gi|	0.723	0.663	0.524	9e-17
357518655	119	hypothetical protein MTR_8g083150 [Medic	0.946	0.890	0.469	3e-16
351722809	119	uncharacterized protein LOC100500295 pre	0.946	0.890	0.473	4e-16
224055827	124	predicted protein [Populus trichocarpa]	0.776	0.701	0.505	7e-16
224055829	84	predicted protein [Populus trichocarpa]	0.714	0.952	0.573	9e-16
255646829	119	unknown [Glycine max]	0.937	0.882	0.450	1e-15

>gi|224129192|ref|XP_002328913.1| predicted protein [Populus trichocarpa] gi|222839343|gb|EEE77680.1| predicted protein [Populus trichocarpa]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 66/111 (59%), Gaps = 4/111 (3%)

Query: 3   IDMKKFCSLCLLLFAVSSVTAAAKE--SYKHGECDGSIAECGELAAEEFSMESETSKRVL 60
           ++ K F   C LL   S + A   +  S K  EC+GSIAEC E    EF M S+ SKR L
Sbjct: 1   MEPKSFQYFCFLLVIFSLIIAQLSDRVSSKTNECNGSIAECSE--EYEFLMPSDISKRFL 58

Query: 61  AAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
               K+ISPGAL+ + PVCNGGA G  YS SCLPP SN   RGC+ Y  CR
Sbjct: 59  EEKRKYISPGALKPNRPVCNGGASGQSYSSSCLPPPSNPPSRGCSKYYHCR 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255600723|ref|XP_002537518.1| RALFL33, putative [Ricinus communis] gi|223516053|gb|EEF24865.1| RALFL33, putative [Ricinus communis]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 34  CDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCL 93
           C+GSIAEC E   E   MESE S+R LA   K+ISPGAL+RD PVCNGGA G  YS SCL
Sbjct: 13  CNGSIAECNEELYEML-MESEISRRFLAE-KKYISPGALKRDQPVCNGGANGQSYSSSCL 70

Query: 94  PPQSNRYQRGCAAYKMCR 111
           PP SN + RGC+ Y  CR
Sbjct: 71  PPSSNPHTRGCSKYYQCR 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490538|gb|AFK33335.1| unknown [Lotus japonicus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 5/80 (6%)

Query: 34  CDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKS-- 91
           C+GSIAEC +   +E  MESE S+R L    ++ISPGAL+RD PVCNGGA G+ YSKS  
Sbjct: 34  CNGSIAECNQ--EDELLMESEISRRFLEE-RRYISPGALKRDKPVCNGGASGEAYSKSGG 90

Query: 92  CLPPQSNRYQRGCAAYKMCR 111
           CLPP SN Y RGC+ Y  CR
Sbjct: 91  CLPPPSNPYNRGCSKYYRCR 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129196|ref|XP_002328914.1| predicted protein [Populus trichocarpa] gi|222839344|gb|EEE77681.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 2/91 (2%)

Query: 22  TAAAKESYKHGECDGSIAE-CGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCN 80
            AA + S ++ +C GS+ E  G++A    SMESETS+R + A  KFI+PGALR DAP C 
Sbjct: 30  VAAMQASSENVQCSGSMVELSGQMAEGGLSMESETSRRTVRAI-KFITPGALRPDAPFCA 88

Query: 81  GGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
              RG+PYS +CLPP SN Y RGC  Y  CR
Sbjct: 89  KVTRGEPYSSNCLPPPSNSYNRGCNNYNRCR 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559182|ref|XP_002520612.1| RALFL33, putative [Ricinus communis] gi|223540173|gb|EEF41748.1| RALFL33, putative [Ricinus communis]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 30  KHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYS 89
           ++ +C  ++AE  +   EE  MESETS+R+L    KFISPG LRR+ P C    RGDPYS
Sbjct: 40  RNTQCSATMAERSDTDEEELLMESETSQRLLLGG-KFISPGTLRRNIPACGNAERGDPYS 98

Query: 90  KSCLPPQSNRYQRGCAAYKMCR 111
            +CLPP SN Y RGC  Y  CR
Sbjct: 99  ATCLPPPSNPYNRGCLRYYKCR 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518655|ref|XP_003629616.1| hypothetical protein MTR_8g083150 [Medicago truncatula] gi|217075308|gb|ACJ86014.1| unknown [Medicago truncatula] gi|355523638|gb|AET04092.1| hypothetical protein MTR_8g083150 [Medicago truncatula] gi|388514669|gb|AFK45396.1| unknown [Medicago truncatula]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 7/113 (6%)

Query: 3   IDMKKFCSLCLLLFA-VSSVTAAAKESYKHGE-CDGSIAECGELAAEEFSMESETSKRVL 60
           I +  F    L  F  +SS   +   ++ H   C+GSIAEC +   +E  MESE S+R L
Sbjct: 7   IKLLTFFYFMLFGFMNLSSTVISLSSNHHHASICNGSIAECNQ--EDEQLMESEISRRFL 64

Query: 61  AAAHKFISPGALRRDAPVCNGGARGDPYSKS--CLPPQSNRYQRGCAAYKMCR 111
               ++IS GAL+RD PVCNGGA G+ YSKS  C+PP SN Y RGC+ Y  CR
Sbjct: 65  EQ-RRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCSKYYRCR 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722809|ref|NP_001235977.1| uncharacterized protein LOC100500295 precursor [Glycine max] gi|255629962|gb|ACU15333.1| unknown [Glycine max]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 66/112 (58%), Gaps = 6/112 (5%)

Query: 3   IDMKKFCSLCLLLFA-VSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLA 61
           I +  FC   L  F   SS T  + +S+    C+GSIAEC +   +E  MESE S+R L 
Sbjct: 8   IRLLCFCYFMLFSFMHFSSCTVFSLKSHA-STCNGSIAECNQ--EDELLMESEISRRFLE 64

Query: 62  AAHKFISPGALRRDAPVCNGGARGDPYSKS--CLPPQSNRYQRGCAAYKMCR 111
               +IS GAL+RD PVCNGG  G+ YSK+  CLPP SN   RGC+ Y  CR
Sbjct: 65  QKRSYISNGALQRDKPVCNGGGSGEAYSKTGGCLPPPSNPQNRGCSKYYRCR 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055827|ref|XP_002298673.1| predicted protein [Populus trichocarpa] gi|222845931|gb|EEE83478.1| predicted protein [Populus trichocarpa]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 24  AAKESYKHGECDGSIAECG-ELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGG 82
           A + S +  +  GS+ EC  E+A EE SMESETS+R++ A  K+I+PG LR D+  C   
Sbjct: 36  AMQASTEQVQYSGSMVECSDEMAEEELSMESETSRRIVRAV-KYITPGVLRSDSAFCGKV 94

Query: 83  ARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
            RG+PY  SCLPP SN Y RGC  Y  CR
Sbjct: 95  KRGEPYQGSCLPPPSNNYNRGCNKYYKCR 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055829|ref|XP_002298674.1| predicted protein [Populus trichocarpa] gi|224093898|ref|XP_002334815.1| predicted protein [Populus trichocarpa] gi|222845932|gb|EEE83479.1| predicted protein [Populus trichocarpa] gi|222875097|gb|EEF12228.1| predicted protein [Populus trichocarpa]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 30  KHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYS 89
           K   C+GSIAEC E    EF M S  SKR L    K+ISPGAL+ D PVCN GA G  YS
Sbjct: 3   KTNGCNGSIAECDE--EYEFLMPSHVSKRYLEEKRKYISPGALKPDQPVCNEGASGQSYS 60

Query: 90  KSCLPPQSNRYQRGCAAYKMCR 111
            SCLPP SN   RGC+ Y  CR
Sbjct: 61  SSCLPPPSNSPSRGCSKYYRCR 82

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646829|gb|ACU23886.1| unknown [Glycine max]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 5   MKKFCSLCLLLFAVSSVTAAAKESYKH--GECDGSIAECGELAAEEFSMESETSKRVLAA 62
           ++  C    +LF+    T+    S K     C+GSIAEC +   +E  MESE S+R L  
Sbjct: 8   IRLVCFCYFMLFSSMHFTSCTVLSLKSHASTCNGSIAECNQ--EDELLMESEISRRFLEQ 65

Query: 63  AHKFISPGALRRDAPVCNGGARGDPYSKS--CLPPQSNRYQRGCAAYKMCR 111
              +IS GAL+RD PVCNGG  G+ YSK+  CLPP SN   RGC+ Y  CR
Sbjct: 66  KRSYISNGALQRDKPVCNGGGSGEAYSKTRGCLPPPSNPQSRGCSKYYRCR 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2129341	117	RALFL32 "ralf-like 32" [Arabid	0.830	0.794	0.490	1.2e-17
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.830	0.801	0.404	1.5e-12
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.857	0.834	0.387	2.2e-11
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.651	0.608	0.423	2.2e-09
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.660	0.621	0.423	2.2e-09
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.678	0.550	0.404	4.7e-09
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.830	0.845	0.366	8.7e-08
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.848	0.805	0.343	1.6e-06
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.892	0.884	0.311	2.1e-06
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.919	0.936	0.321	4.3e-06

TAIR|locus:2129341 RALFL32 "ralf-like 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 51/104 (49%), Positives = 65/104 (62%)

Query:    11 LCLLLFAVSSVTAAAKESYKHGECDGSIAECGELA-AEEFS--MESETSKRVLAA-AHKF 66
             LCLLL   + VT+ A  S     C+GS+AEC  +   EE S  MES +S+R+    AHK 
Sbjct:    17 LCLLL---AHVTSKASSS---SLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHK- 69

Query:    67 ISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
             +S GALRR+ P C+GG RG+ YS  CLPP SN Y RGC+ +  C
Sbjct:    70 LSYGALRRNQPACDGGKRGESYSTQCLPPPSNPYSRGCSKHYRC 113

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 40/99 (40%), Positives = 57/99 (57%)

Query:    16 FAVSSVTAAAKESYK--HGECDGSIAECG-ELAAEEFSMESETSKRVLAAAHKFISPGAL 72
             F  ++VT+ +   +     +C+G+IAEC    A EEF M+SE ++R+LA   K+IS GAL
Sbjct:    20 FLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGAL 78

Query:    73 RRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
             RR+   C+   RG  Y       Q+N Y RGC+A   CR
Sbjct:    79 RRNTVPCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 115

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 43/111 (38%), Positives = 62/111 (55%)

Query:    11 LCLLL--FAVSSVTAAAKESY-------KHGECDGSIAECGELAAEEFSMESETSKRVLA 61
             LC+L+  F +S   A    +Y         G C GSI EC     EEF ++SE+++R+LA
Sbjct:     9 LCVLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGEC-IAEEEEFELDSESNRRILA 67

Query:    62 AAHKFISPGALRRDAPVCNGGARGDPYSKSCLP-PQSNRYQRGCAAYKMCR 111
                K+IS GAL++++  C+   RG  Y  +C P  Q+N Y RGC+A   CR
Sbjct:    68 TK-KYISYGALQKNSVPCS--RRGASYY-NCKPGAQANPYSRGCSAITRCR 114

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 33/78 (42%), Positives = 46/78 (58%)

Query:    34 CDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCL 93
             C GSIAEC  + AEE  M+SE ++R+LA   K+IS  +L+R++  C+   RG  Y     
Sbjct:    47 CHGSIAEC--IGAEEEEMDSEINRRILATT-KYISYQSLKRNSVPCS--RRGASYYNCQN 101

Query:    94 PPQSNRYQRGCAAYKMCR 111
               Q+N Y RGC+    CR
Sbjct:   102 GAQANPYSRGCSKIARCR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 33/78 (42%), Positives = 44/78 (56%)

Query:    34 CDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCL 93
             C GSIAEC     EE   +S+ S+R+LA   K+IS GA+RR++  C+   RG  Y     
Sbjct:    45 CTGSIAEC-IAEEEEMEFDSDISRRILAQK-KYISYGAMRRNSVPCS--RRGASYYNCQR 100

Query:    94 PPQSNRYQRGCAAYKMCR 111
               Q+N Y RGC+    CR
Sbjct:   101 GAQANPYSRGCSTITRCR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 38/94 (40%), Positives = 49/94 (52%)

Query:    33 ECDGSIAECGELAA---------------EEFSMESETSKRVLAAAHKFISPGALRRDAP 77
             EC G+IAEC   AA               EEF M+SE ++R+LA   ++IS GALRR+  
Sbjct:    46 ECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILAT-RRYISYGALRRNTI 104

Query:    78 VCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
              C+   RG  Y       Q+N Y RGC+A   CR
Sbjct:   105 PCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 136

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 37/101 (36%), Positives = 55/101 (54%)

Query:    11 LCLLLFAVSS-VTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAHKFISP 69
             L L + A S+  T    +S  +G+  G I E GEL   ++ M+SET++R LAA   +IS 
Sbjct:    12 LTLAVVAESANATWTLTKSCVNGQ--GCIGEDGEL---DYLMDSETNRRQLAARRSYISY 66

Query:    70 GALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
             GALR++   C+   RG  Y       ++N Y+RGC+    C
Sbjct:    67 GALRKNNVPCS--RRGRSYYDCKKRKRANPYRRGCSVITHC 105

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 35/102 (34%), Positives = 45/102 (44%)

Query:    11 LCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFS--MESETSKRVLAAAHKFIS 68
             LCL      SVT        +GE D  +   G +  EE    M SE S+RV+    ++IS
Sbjct:    13 LCLQTHLSISVTVPIPSV--NGEIDAMLNRNGVIGEEEGEEMMPSEISRRVMMMRKQYIS 70

Query:    69 PGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
                LRRD   C     G  Y  +C   Q+N Y RGC+    C
Sbjct:    71 YETLRRDMVPCQ--KPGASYY-ACRSGQANAYNRGCSVITRC 109

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 33/106 (31%), Positives = 47/106 (44%)

Query:     8 FCSLCLLLFAVSSVTAAAKE---SYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAH 64
             F S  L++FA+  +  +A        +GE D  +     +  +E  M +E S+RVL A  
Sbjct:     2 FNSTALVIFAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQK 61

Query:    65 KFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
             ++I    LRRD   C     G  Y   C   Q+N Y RGC     C
Sbjct:    62 RYIGYETLRRDMVPCQ--KPGASYY-DCRSGQANSYSRGCDTITRC 104

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 36/112 (32%), Positives = 54/112 (48%)

Query:     1 MEIDMKKFCSLCLLLFAVSSVTAA--AKESYKHGECDGSIAECGELAAEEFSMESETSKR 58
             M + M     L +L     SV A     +S  +G+  G I E  EL   E  M+SET++R
Sbjct:     1 MGVKMLLIFGLLILAMVAKSVNATYPLTKSCINGQ--GCIGEDDEL---ESLMDSETNRR 55

Query:    59 VLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
              LA   ++I   AL+++   C+   RG  Y       ++N Y+RGC+A   C
Sbjct:    56 QLARGRRYIGYDALKKNNVPCS--RRGRSYYDCKKRRRNNPYRRGCSAITHC 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.43    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.11u 0.15s 12.26t   Elapsed:  00:00:00
  Total cpu time:  12.11u 0.15s 12.26t   Elapsed:  00:00:00
  Start:  Fri May 10 01:28:03 2013   End:  Fri May 10 01:28:03 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23262	RLF32_ARATH	No assigned EC number	0.4466	0.8392	0.8034	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00880027 hypothetical protein (112 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	8e-13
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	1e-10
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	2e-10

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score = 59.8 bits (144), Expect = 8e-13
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 33  ECDGSIAECG-ELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKS 91
           +C+G+IAEC    A EEF M+SE ++R+LA   K+IS GALRR+   C+   RG  Y   
Sbjct: 42  KCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGALRRNTVPCS--RRGASYYNC 98

Query: 92  CLPPQSNRYQRGCAAYKMCR 111
               Q+N Y RGC+A   CR
Sbjct: 99  RRGAQANPYSRGCSAITRCR 118

Length = 119

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 52.4 bits (126), Expect = 1e-10
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 44  LAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRG 103
                  M+S   +RVLAA  ++IS GALRR++  C+   RG  Y        +N Y RG
Sbjct: 1   EEEALVVMDSPAGRRVLAA-RRYISYGALRRNSVPCS--RRGASYYNCKPGAPANPYSRG 57

Query: 104 CAAYKMCR 111
           C+A   CR
Sbjct: 58  CSAITRCR 65

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 18/94 (19%)

Query: 33  ECDGSIAECGELAA---------------EEFSMESETSKRVLAAAHKFISPGALRRDAP 77
           EC G+IAEC   AA                EF M+SE ++R+LA   ++IS GALRR+  
Sbjct: 46  ECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILAT-RRYISYGALRRNTI 104

Query: 78  VCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
            C+   RG  Y       Q+N Y RGC+A   CR
Sbjct: 105 PCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 136

Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.93

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=1.9e-35  Score=213.35  Aligned_cols=78  Identities=47%  Similarity=0.859  Sum_probs=70.9

Q ss_pred             CCCccCchhhhhhh-hhhhhcccchhhhhhHhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 033717           31 HGECDGSIAECGEL-AAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKM  109 (112)
Q Consensus        31 ~~~C~Gsi~EC~~~-~e~E~~m~se~~RR~L~~~~~yISYgAL~~d~vpC~~~~~G~sYy~~C~~~~aNpY~RGCs~i~R  109 (112)
                      ...|+|+++||+++ +|+|++||||++||+|+++ +||||+||++|.+||+  ++|++||+|++++|+|||+|||++|||
T Consensus        40 ~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~-rYISYgALrrd~vPCs--rrG~SYynC~~~~~ANPY~RGCs~ITr  116 (119)
T PLN03222         40 DSKCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGALRRNTVPCS--RRGASYYNCRRGAQANPYSRGCSAITR  116 (119)
T ss_pred             CCcCCCCHHHhhcccccchhccccHHHHHHHhhc-CeecHHHhcCCCCCCC--CCCCCccccCCCCCCCCCCCCchhhcc
Confidence            34699999999974 5679999999999999987 9999999999999999  789999965556899999999999999


Q ss_pred             cc
Q 033717          110 CR  111 (112)
Q Consensus       110 Cr  111 (112)
                      ||
T Consensus       117 Cr  118 (119)
T PLN03222        117 CR  118 (119)
T ss_pred             cc
Confidence            98

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=1.4e-34  Score=212.70  Aligned_cols=102  Identities=39%  Similarity=0.654  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhh-------cCCCCccCchhhhhh------h-------hh--hhhcccchhhhhhHhhhc
Q 033717            7 KFCSLCLLLFAVSSVTAAAKES-------YKHGECDGSIAECGE------L-------AA--EEFSMESETSKRVLAAAH   64 (112)
Q Consensus         7 ~~~~l~~ll~~~~~~~~~~~~~-------~~~~~C~Gsi~EC~~------~-------~e--~E~~m~se~~RR~L~~~~   64 (112)
                      -|..|++|.+-+-+|++..|..       +....|+|||+||++      +       +|  +|++||||++||+|+++ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~-   91 (137)
T PLN03221         13 IFAILLILAVHFWSVAVSSQSIEFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATR-   91 (137)
T ss_pred             HHHHHHHHHHHHHhheeecccccccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcC-
Confidence            4555555444445555433222       223469999999973      1       11  37899999999999987 


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 033717           65 KFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR  111 (112)
Q Consensus        65 ~yISYgAL~~d~vpC~~~~~G~sYy~~C~~~~aNpY~RGCs~i~RCr  111 (112)
                      +||||+||++|.+||+  ++|++||+|++++|+|||+|||++|||||
T Consensus        92 rYISYgALrrd~vPCs--rrG~SYynC~~~~pANPY~RGCs~ITRCr  136 (137)
T PLN03221         92 RYISYGALRRNTIPCS--RRGASYYNCRRGAQANPYSRGCSAITRCR  136 (137)
T ss_pred             CccCHHHhccCCCCCC--CCCCCccccCCCCCCCCCCCCcccccccC
Confidence            8999999999999999  78999997666689999999999999998

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.93  E-value=4.8e-27  Score=154.89  Aligned_cols=63  Identities=49%  Similarity=0.849  Sum_probs=59.4

Q ss_pred             hhhhcccchhhhhhHhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 033717           46 AEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR  111 (112)
Q Consensus        46 e~E~~m~se~~RR~L~~~~~yISYgAL~~d~vpC~~~~~G~sYy~~C~~~~aNpY~RGCs~i~RCr  111 (112)
                      |+|+.|+||++||+|+++ +||||+||++|.+||.  .+|.+||++|+++|+|||+|||++|||||
T Consensus         3 e~~~~~~s~~~~R~~a~~-~yIsYgaL~~~~~pc~--~~g~~~~~c~~~~paNpY~RGC~~~~rCr   65 (66)
T PF05498_consen    3 EEEVVMESEASRRILAAR-RYISYGALRRDRVPCS--PRGCSYYNCCPRQPANPYSRGCSKITRCR   65 (66)
T ss_pred             hHHhhhhhHHHHHHHhcC-CeecchhccCCCCCCC--cccCCCcccCCCCCCCCCCCCCCccccCC
Confidence            578899999999999988 9999999999999999  78999997778899999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00