Citrus Sinensis ID: 033770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Secondary Structure (PSIPRED)
cHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccHEHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEcccc
Coil and Loop (DISEMBL)
MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Flexible Loop (DISEMBL)
MVDEMYekglranevTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLlelqpehcrryvvlsnvht
Low Complexity Region (SEG)
MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Disordered region (IsUnstruct)
********GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS****
Disordered Region (DISOPRED)
MVDEMY*KGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Disordered Region (DISEMBL)
MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Disordered Region (DISPRO)
MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9SY75	467	Putative pentatricopeptid	yes	no	0.964	0.231	0.463	7e-27
Q9FJY7	620	Pentatricopeptide repeat-	no	no	0.964	0.174	0.430	1e-22
Q9FIF7	544	Putative pentatricopeptid	no	no	0.964	0.198	0.439	3e-22
O23337	722	Pentatricopeptide repeat-	no	no	0.955	0.148	0.426	2e-21
Q9LJ69	472	Pentatricopeptide repeat-	no	no	0.982	0.233	0.409	5e-21
Q9LUJ2	842	Pentatricopeptide repeat-	no	no	0.991	0.131	0.412	2e-20
Q9LIC3	628	Putative pentatricopeptid	no	no	0.937	0.167	0.396	2e-20
Q9FG16	622	Pentatricopeptide repeat-	no	no	0.964	0.173	0.398	3e-20
Q5G1T1	850	Pentatricopeptide repeat-	no	no	0.973	0.128	0.387	1e-19
Q9CAY1	623	Putative pentatricopeptid	no	no	1.0	0.179	0.377	1e-19

>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 81/123 (65%), Gaps = 15/123 (12%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           M + M    +  N +T +A+LTACAR++LV+LG++LF S+  E++++P  EHYGCVVDL+
Sbjct: 311 MFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLI 370

Query: 61  GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL +A  F+ S               ACKIH   +L + VGK+L+ LQP+HC +YV
Sbjct: 371 GRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYV 430

Query: 106 VLS 108
            LS
Sbjct: 431 ALS 433

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 15/123 (12%)

Query: 4   EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63
           EM + G++ N +TF AVLTAC+   LVE G  +F+S+  ++ + P +EHYGC+VDLLGRA
Sbjct: 338 EMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRA 397

Query: 64  GLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108
           GLL EA  F               L  AC+IH  ++L  E+G+ L+ + P H  RYV  +
Sbjct: 398 GLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKA 457

Query: 109 NVH 111
           N+H
Sbjct: 458 NIH 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 15/123 (12%)

Query: 4   EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63
           +M  +G R N+VT VA+L AC+   L+++GLE+F+S+   F V P +EHYGC+VDLLGR 
Sbjct: 346 DMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRV 405

Query: 64  GLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108
           G L EA  F               L SACKIHG ++L  ++ KRL E +      YV+LS
Sbjct: 406 GRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLS 465

Query: 109 NVH 111
           N++
Sbjct: 466 NLY 468

Arabidopsis thaliana (taxid: 3702)

>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 75/122 (61%), Gaps = 15/122 (12%)

Query: 5   MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64
           M ++ +  NEVTFV VL  C+ + LVE G ++F S+  E+ + P +EHYGC+VDL GRA 
Sbjct: 436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495

Query: 65  LLSEA-----------NEFLW----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109
           LL EA           N  +W    SAC+IHG ++L     KR+LEL+P+H    V++SN
Sbjct: 496 LLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSN 555

Query: 110 VH 111
           ++
Sbjct: 556 IY 557

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 22/132 (16%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           +++ M E G++ NE+TF ++L+A     LVE G+ELF S+   F V P++EHYGC+VDLL
Sbjct: 310 LLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLL 369

Query: 61  GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPE------ 99
           G+AG + EA +F               L +AC I+G   +  E+GK LLE++ E      
Sbjct: 370 GKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSG 429

Query: 100 -HCRRYVVLSNV 110
             C  YV LSNV
Sbjct: 430 SECEDYVALSNV 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + D+M E+GL+ + V FV  LTAC+   LV+ G E+F+S+L    V P   HYGC+VDLL
Sbjct: 558 LFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLL 617

Query: 61  GRAGLLSEA-----------NEFLW----SACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL EA           N+ +W    +AC++ G V+++    +++  L PE    YV
Sbjct: 618 GRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYV 677

Query: 106 VLSNVH 111
           +LSNV+
Sbjct: 678 LLSNVY 683

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 16/121 (13%)

Query: 7   EKGLRANEVTFVAVLTACARARLVELGLELFHSLL-GEFEVVPIMEHYGCVVDLLGRAGL 65
           EK ++ + VT +AVL+ C+  R+ + GL +F  ++ GE+   P  EHYGC+VD+LGRAG 
Sbjct: 349 EKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGR 408

Query: 66  LSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110
           + EA EF               L  AC++H +V +   VG+RL+E++PE+   YV+LSN+
Sbjct: 409 IDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNL 468

Query: 111 H 111
           +
Sbjct: 469 Y 469

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 15/123 (12%)

Query: 4   EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63
           +M   G    +VTF AVL+AC+   LVE GLE++ ++  +  + P +EHYGC+VD+LGRA
Sbjct: 340 QMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRA 399

Query: 64  GLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108
           G L+EA  F               L  ACKI+   +++  VG  L++++PEH   YV+LS
Sbjct: 400 GKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLS 459

Query: 109 NVH 111
           N++
Sbjct: 460 NIY 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 15/124 (12%)

Query: 3   DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62
           ++M E+G++ NEVT+VA+L+AC+   LV  G   F+S+  + ++ P MEHY C+VDLL R
Sbjct: 564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623

Query: 63  AGLLSEANEFL-----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107
           AGLL++A EF+           W     AC++H   +L     +++LEL P     Y+ L
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683

Query: 108 SNVH 111
           SN++
Sbjct: 684 SNIY 687

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 15/127 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + D+M ++G+R +   FV VL+AC+ + L + GLELF ++  E+++ P  EHY C+VDLL
Sbjct: 345 LFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLL 404

Query: 61  GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAG L EA EF+ S               ACKIH  V ++     +++E +P +   YV
Sbjct: 405 GRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYV 464

Query: 106 VLSNVHT 112
           ++SN+++
Sbjct: 465 LMSNIYS 471

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
224115616	474	predicted protein [Populus trichocarpa]	0.991	0.234	0.626	5e-37
449528931	477	PREDICTED: LOW QUALITY PROTEIN: putative	0.955	0.224	0.581	2e-33
449453704	477	PREDICTED: putative pentatricopeptide re	0.955	0.224	0.581	3e-33
255567729	524	pentatricopeptide repeat-containing prot	0.991	0.211	0.571	1e-32
297739174	265	unnamed protein product [Vitis vinifera]	0.991	0.418	0.563	2e-31
359485621	454	PREDICTED: LOW QUALITY PROTEIN: putative	0.991	0.244	0.563	2e-31
359485617	531	PREDICTED: putative pentatricopeptide re	0.991	0.209	0.563	3e-31
147809483	480	hypothetical protein VITISV_041924 [Viti	0.991	0.231	0.555	9e-31
357474431	470	hypothetical protein MTR_4g078750 [Medic	0.982	0.234	0.484	9e-26
297843840	467	pentatricopeptide repeat-containing prot	0.964	0.231	0.463	1e-25

>gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa] gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/126 (62%), Positives = 93/126 (73%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           M  +M  +GL  NEVTF+AVLTACARA+LVE+GLELF S+ GEF +VPIMEHYGCVVDLL
Sbjct: 316 MFKKMKGEGLCPNEVTFIAVLTACARAKLVEIGLELFQSMAGEFGLVPIMEHYGCVVDLL 375

Query: 61  GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           G AGLL EA+EF               L  ACKIHGA+ L +EVG RLLELQP+HC +YV
Sbjct: 376 GMAGLLREASEFIRRMPFEPDASALGALLGACKIHGAIDLGNEVGSRLLELQPQHCGQYV 435

Query: 106 VLSNVH 111
            LS++H
Sbjct: 436 ALSSIH 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g10330-like [Cucumis sativus]

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 89/122 (72%), Gaps = 15/122 (12%)

Query: 5   MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64
           M  +G+  NEVTFVA+LTACAR +LV+LGL+LF S+L +F +VPI EHY CVVDLLG+AG
Sbjct: 314 MKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAG 373

Query: 65  LLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109
           LL EA EF               L SACKIHGA +L +EVG+RLLE+QP HC RYV L++
Sbjct: 374 LLREATEFIESMPFDPDASVLGALLSACKIHGATELGNEVGRRLLEMQPRHCGRYVTLAS 433

Query: 110 VH 111
           ++
Sbjct: 434 MN 435

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Cucumis sativus]

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 89/122 (72%), Gaps = 15/122 (12%)

Query: 5   MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64
           M  +G+  NEVTFVA+LTACAR +LV+LGL+LF S+L +F +VPI EHY CVVDLLG+AG
Sbjct: 314 MKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAG 373

Query: 65  LLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109
           LL EA EF               L SACKIHGA +L +EVG+RLLE+QP HC RYV L++
Sbjct: 374 LLREATEFIESMPFDPDASVLGALLSACKIHGATELGNEVGRRLLEMQPRHCGRYVTLAS 433

Query: 110 VH 111
           ++
Sbjct: 434 MN 435

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/126 (57%), Positives = 88/126 (69%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           M + M EKG   NEVTFV VLTAC RA+LV+ G+ LF S+  ++ V PIMEHYGCVVDLL
Sbjct: 314 MFEMMEEKGPSPNEVTFVVVLTACTRAKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVDLL 373

Query: 61  GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL EA+E + S               ACKIHGA KL++EVG RLL LQP HC ++V
Sbjct: 374 GRAGLLREASEIIRSMPFEPDASVLGALLGACKIHGANKLANEVGGRLLRLQPLHCGQFV 433

Query: 106 VLSNVH 111
           +LSN++
Sbjct: 434 LLSNIN 439

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739174|emb|CBI28825.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + ++M  KGL  +EVTFVAV+TACAR++ V LGL  F S+  +F VVP M HYGCVVDLL
Sbjct: 107 LFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLL 166

Query: 61  GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL EA EF+ S               ACK+HGA++L +EVG+RLLE QP HC RYV
Sbjct: 167 GRAGLLEEATEFIKSMPFEPDATVLGALLGACKVHGAIELGNEVGRRLLEFQPHHCGRYV 226

Query: 106 VLSNVH 111
            LSN++
Sbjct: 227 TLSNIY 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g10330-like [Vitis vinifera]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + ++M  KGL  +EVTFVAV+TACAR++ V LGL  F S+  +F VVP M HYGCVVDLL
Sbjct: 296 LFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLL 355

Query: 61  GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL EA EF+ S               ACK+HGA++L +EVG+RLLE QP HC RYV
Sbjct: 356 GRAGLLEEATEFIKSMPFEPDATVLGALLGACKVHGAIELGNEVGRRLLEFQPHHCGRYV 415

Query: 106 VLSNVH 111
            LSN++
Sbjct: 416 TLSNIY 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + ++M  +GL  +EVTFVAV+TACAR++ V LGL  F S+  +F VVP M HYGCVVDLL
Sbjct: 324 LFEKMKMQGLCPDEVTFVAVITACARSKFVVLGLGFFQSMWCDFGVVPRMVHYGCVVDLL 383

Query: 61  GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL EA EF               L  ACK+HGA++L +EVG+RLLELQP HC RYV
Sbjct: 384 GRAGLLEEATEFIKRMPFEPDATVLGALLGACKVHGAIELGNEVGRRLLELQPHHCGRYV 443

Query: 106 VLSNVH 111
            LSN++
Sbjct: 444 TLSNIY 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809483|emb|CAN60147.1| hypothetical protein VITISV_041924 [Vitis vinifera]

 Score =  137 bits (344), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + ++M   GL  +EVTFVAV+TACAR++ V LGL  F S+  +F VVP M HYGCVVDLL
Sbjct: 232 LFEKMKMXGLCPDEVTFVAVITACARSKFVVLGLGFFQSMWCDFGVVPRMXHYGCVVDLL 291

Query: 61  GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL EA EF               L  ACK+HGA++L +EVG+RLLE QP HC RYV
Sbjct: 292 GRAGLLEEATEFIKXMPFEPDATVLGALLGACKVHGAIELGNEVGRRLLEXQPHHCGRYV 351

Query: 106 VLSNVH 111
            LSN++
Sbjct: 352 TLSNIY 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula] gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 16/126 (12%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           + ++M  +GL+ N +TFVAVLTACAR   V  GLELF S+  +F+VVP+MEHYGCVVDLL
Sbjct: 313 LFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSKFQVVPVMEHYGCVVDLL 372

Query: 61  GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAG + EA E + +               AC+IHGA++L  E+ K +L+LQ +HC +Y+
Sbjct: 373 GRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAIELGEEIAK-MLKLQTQHCGQYL 431

Query: 106 VLSNVH 111
           +LS+++
Sbjct: 432 LLSSMY 437

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 15/123 (12%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           M + M    +  N +T +A+LTACAR +LV+LG++LF S+  EF+++P  EHYGC+VDL+
Sbjct: 311 MFEMMKSSNVHPNGITLLAILTACARYKLVDLGIQLFSSICSEFKIIPTSEHYGCIVDLI 370

Query: 61  GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GRAGLL +A  F               L  ACKIH   +L ++VGK+L+ LQP+HC +YV
Sbjct: 371 GRAGLLVDAANFIKNLPFEPDASVFGALLGACKIHENAELGNKVGKQLIVLQPQHCGQYV 430

Query: 106 VLS 108
            LS
Sbjct: 431 ALS 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2012858	467	AT1G10330 "AT1G10330" [Arabido	0.964	0.231	0.463	5.3e-24
TAIR|locus:2154855	620	AT5G66520 "AT5G66520" [Arabido	0.964	0.174	0.430	1.2e-20
TAIR|locus:2130354	722	AT4G14820 "AT4G14820" [Arabido	0.955	0.148	0.426	1.5e-19
TAIR|locus:2091546	628	AT3G13770 [Arabidopsis thalian	0.937	0.167	0.396	2.3e-18
TAIR|locus:2144143	622	AT5G06540 [Arabidopsis thalian	0.964	0.173	0.398	3.7e-18
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.991	0.149	0.333	1.1e-17
TAIR|locus:2085874	472	MEF20 "AT3G18970" [Arabidopsis	0.883	0.209	0.412	1.5e-17
TAIR|locus:2080727	623	MEF10 "mitochondrial RNA editi	1.0	0.179	0.377	1.7e-17
TAIR|locus:2082886	850	EMB2261 "embryo defective 2261	0.973	0.128	0.387	1.7e-17
TAIR|locus:2057574	583	AT2G33760 [Arabidopsis thalian	0.544	0.104	0.508	2.7e-17

TAIR|locus:2012858 AT1G10330 "AT1G10330" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 57/123 (46%), Positives = 81/123 (65%)

Query:     1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
             M + M    +  N +T +A+LTACAR++LV+LG++LF S+  E++++P  EHYGCVVDL+
Sbjct:   311 MFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLI 370

Query:    61 GRAGLLSEANEFLWS---------------ACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
             GRAGLL +A  F+ S               ACKIH   +L + VGK+L+ LQP+HC +YV
Sbjct:   371 GRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYV 430

Query:   106 VLS 108
              LS
Sbjct:   431 ALS 433

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 53/123 (43%), Positives = 76/123 (61%)

Query:     4 EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63
             EM + G++ N +TF AVLTAC+   LVE G  +F+S+  ++ + P +EHYGC+VDLLGRA
Sbjct:   338 EMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRA 397

Query:    64 GLLSEANEFL-----------WSA----CKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108
             GLL EA  F+           W A    C+IH  ++L  E+G+ L+ + P H  RYV  +
Sbjct:   398 GLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKA 457

Query:   109 NVH 111
             N+H
Sbjct:   458 NIH 460

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/122 (42%), Positives = 75/122 (61%)

Query:     5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG 64
             M ++ +  NEVTFV VL  C+ + LVE G ++F S+  E+ + P +EHYGC+VDL GRA 
Sbjct:   436 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495

Query:    65 LLSEA-----------NEFLW----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN 109
             LL EA           N  +W    SAC+IHG ++L     KR+LEL+P+H    V++SN
Sbjct:   496 LLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSN 555

Query:   110 VH 111
             ++
Sbjct:   556 IY 557

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 48/121 (39%), Positives = 75/121 (61%)

Query:     7 EKGLRANEVTFVAVLTACARARLVELGLELFHSLL-GEFEVVPIMEHYGCVVDLLGRAGL 65
             EK ++ + VT +AVL+ C+  R+ + GL +F  ++ GE+   P  EHYGC+VD+LGRAG 
Sbjct:   349 EKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGR 408

Query:    66 LSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV 110
             + EA EF               L  AC++H +V +   VG+RL+E++PE+   YV+LSN+
Sbjct:   409 IDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNL 468

Query:   111 H 111
             +
Sbjct:   469 Y 469

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 49/123 (39%), Positives = 74/123 (60%)

Query:     4 EMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA 63
             +M   G    +VTF AVL+AC+   LVE GLE++ ++  +  + P +EHYGC+VD+LGRA
Sbjct:   340 QMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRA 399

Query:    64 GLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS 108
             G L+EA  F               L  ACKI+   +++  VG  L++++PEH   YV+LS
Sbjct:   400 GKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLS 459

Query:   109 NVH 111
             N++
Sbjct:   460 NIY 462

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 42/126 (33%), Positives = 79/126 (62%)

Query:     1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
             +   M + G++ +++TFV +L+AC+ + +++LG  +F ++  ++++ P +EHYGC++DLL
Sbjct:   457 LFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLL 516

Query:    61 GRAGLLSEANEFL-----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
             G +GL  EA E +           W     ACK+HG V+L     + L++++PE+   YV
Sbjct:   517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576

Query:   106 VLSNVH 111
             +LSN++
Sbjct:   577 LLSNIY 582

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2085874 MEF20 "AT3G18970" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 47/114 (41%), Positives = 70/114 (61%)

Query:     1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
             +++ M E G++ NE+TF ++L+A     LVE G+ELF S+   F V P++EHYGC+VDLL
Sbjct:   310 LLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLL 369

Query:    61 GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPE 99
             G+AG + EA +F               L +AC I+G   +  E+GK LLE++ E
Sbjct:   370 GKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIERE 423

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 48/127 (37%), Positives = 77/127 (60%)

Query:     1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
             + D+M ++G+R +   FV VL+AC+ + L + GLELF ++  E+++ P  EHY C+VDLL
Sbjct:   345 LFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLL 404

Query:    61 GRAGLLSEANEFL-----------WSA----CKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
             GRAG L EA EF+           W A    CKIH  V ++     +++E +P +   YV
Sbjct:   405 GRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYV 464

Query:   106 VLSNVHT 112
             ++SN+++
Sbjct:   465 LMSNIYS 471

GO:0005739 "mitochondrion" evidence=ISM

GO:0016554 "cytidine to uridine editing" evidence=IMP

TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 48/124 (38%), Positives = 75/124 (60%)

Query:     3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62
             ++M E+G++ NEVT+VA+L+AC+   LV  G   F+S+  + ++ P MEHY C+VDLL R
Sbjct:   564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623

Query:    63 AGLLSEANEFL-----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107
             AGLL++A EF+           W     AC++H   +L     +++LEL P     Y+ L
Sbjct:   624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683

Query:   108 SNVH 111
             SN++
Sbjct:   684 SNIY 687

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query:    13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF 72
             N VTFVAVL+ACA A LVE G  ++  +   + ++P +EH+ C+VD+LGRAG L EA +F
Sbjct:   309 NNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKF 368

Query:    73 L 73
             +
Sbjct:   369 I 369

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01930032 hypothetical protein (474 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-27
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-20
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  104 bits (261), Expect = 2e-27
 Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 15/125 (12%)

Query: 3   DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR 62
           + M E G+  +EVTF+++L AC+R+ +V  GLE FHS+  ++ + P ++HY CVVDLLGR
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637

Query: 63  AGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL 107
           AG L+EA  F               L +AC+IH  V+L     + + EL P     Y++L
Sbjct: 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697

Query: 108 SNVHT 112
            N++ 
Sbjct: 698 CNLYA 702

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 84.9 bits (210), Expect = 1e-20
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 15/126 (11%)

Query: 1   MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL 60
           M + M  +G+  N VTF+AVL+AC  + L E G E+F S+     + P   HY C+++LL
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472

Query: 61  GRAGLLSEANEF---------------LWSACKIHGAVKLSHEVGKRLLELQPEHCRRYV 105
           GR GLL EA                  L +AC+IH  ++L     ++L  + PE    YV
Sbjct: 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532

Query: 106 VLSNVH 111
           VL N++
Sbjct: 533 VLLNLY 538

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 7   EKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL 66
           E GL+A+   +  +++ CA++  V+   E+FH ++    V   +  +G ++D   RAG +
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQV 523

Query: 67  SEA 69
           ++A
Sbjct: 524 AKA 526

Length = 1060

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.91
PLN03077	857	Protein ECB2; Provisional	99.9
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.88
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
PLN03218	1060	maturation of RBCL 1; Provisional	99.86
PLN03077	857	Protein ECB2; Provisional	99.85
PF13041	50	PPR_2: PPR repeat family	99.8
PF12854	34	PPR_1: PPR repeat	99.48
PF12854	34	PPR_1: PPR repeat	99.35
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	99.04
PF13041	50	PPR_2: PPR repeat family	98.99
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.95
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	98.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.48
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.47
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.39
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.33
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.26
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.19
PRK15359	144	type III secretion system chaperone protein SscB;	98.18
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.15
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.15
KOG4422	625	consensus Uncharacterized conserved protein [Funct	98.13
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.09
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.0
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.96
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.93
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.9
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.68
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.67
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.52
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.51
PRK14574	822	hmsH outer membrane protein; Provisional	97.47
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.4
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.39
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.36
KOG1126	638	consensus DNA-binding cell division cycle control	97.33
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.29
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.23
PRK12370	553	invasion protein regulator; Provisional	97.22
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.17
PRK12370	553	invasion protein regulator; Provisional	97.15
PRK11189	296	lipoprotein NlpI; Provisional	97.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.11
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.11
KOG3941	406	consensus Intermediate in Toll signal transduction	97.06
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.0
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.99
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.89
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.85
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.84
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.65
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.63
PRK14574	822	hmsH outer membrane protein; Provisional	96.6
PRK15359	144	type III secretion system chaperone protein SscB;	96.59
PF13428	44	TPR_14: Tetratricopeptide repeat	96.52
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.51
KOG0553	304	consensus TPR repeat-containing protein [General f	96.51
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.46
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.41
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.41
PRK10803	263	tol-pal system protein YbgF; Provisional	96.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.33
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.32
PF13371	73	TPR_9: Tetratricopeptide repeat	96.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.25
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.25
PRK11189	296	lipoprotein NlpI; Provisional	96.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.09
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.05
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.02
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	96.01
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	95.96
KOG1126	638	consensus DNA-binding cell division cycle control	95.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	95.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.76
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.63
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.51
KOG2076	895	consensus RNA polymerase III transcription factor	95.44
KOG2076	895	consensus RNA polymerase III transcription factor	95.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.29
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.28
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.24
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.21
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.15
KOG1129	478	consensus TPR repeat-containing protein [General f	94.95
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	94.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.93
PF13371	73	TPR_9: Tetratricopeptide repeat	94.89
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	94.83
KOG1128	777	consensus Uncharacterized conserved protein, conta	94.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.63
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	94.62
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.55
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.43
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.36
KOG2003	840	consensus TPR repeat-containing protein [General f	94.35
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.34
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.28
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.16
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.08
PF12688	120	TPR_5: Tetratrico peptide repeat	93.98
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	93.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.91
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	93.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	93.84
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	93.72
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.71
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.43
COG4783	484	Putative Zn-dependent protease, contains TPR repea	93.21
PRK15331	165	chaperone protein SicA; Provisional	93.21
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.19
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	93.18
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.06
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	93.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	92.8
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.71
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.66
PRK10803	263	tol-pal system protein YbgF; Provisional	92.53
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.49
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.37
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	92.36
KOG2003	840	consensus TPR repeat-containing protein [General f	92.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.06
KOG1125	579	consensus TPR repeat-containing protein [General f	92.02
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.99
PF13512	142	TPR_18: Tetratricopeptide repeat	91.94
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	91.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	91.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	91.62
PRK14720	906	transcript cleavage factor/unknown domain fusion p	91.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	91.5
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	91.27
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	91.18
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	91.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	90.88
smart00299	140	CLH Clathrin heavy chain repeat homology.	90.6
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	90.45
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.2
KOG4555	175	consensus TPR repeat-containing protein [Function	90.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	89.91
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	89.8
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	89.78
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	89.72
PRK15331	165	chaperone protein SicA; Provisional	89.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.58
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	89.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.17
PF12688	120	TPR_5: Tetratrico peptide repeat	89.14
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.89
KOG2376	652	consensus Signal recognition particle, subunit Srp	88.7
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.67
PF13431	34	TPR_17: Tetratricopeptide repeat	88.57
KOG1129	478	consensus TPR repeat-containing protein [General f	88.49
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	88.28
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.05
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.85
PF13929	292	mRNA_stabil: mRNA stabilisation	87.7
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	87.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	87.57
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.41
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	87.05
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	86.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	86.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	86.8
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.49
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	85.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	85.75
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.47
PRK10564	303	maltose regulon periplasmic protein; Provisional	85.47
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.77
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.75
KOG1125	579	consensus TPR repeat-containing protein [General f	84.33
KOG1915	677	consensus Cell cycle control protein (crooked neck	84.31
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.28
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.09
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	84.04
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	83.79
PF13428	44	TPR_14: Tetratricopeptide repeat	83.57
KOG2047	835	consensus mRNA splicing factor [RNA processing and	83.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	83.03
KOG3941	406	consensus Intermediate in Toll signal transduction	82.88
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	82.59
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	82.28
COG3947	361	Response regulator containing CheY-like receiver a	82.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.79
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	81.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	81.31
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	81.0
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	80.91
PF13512	142	TPR_18: Tetratricopeptide repeat	80.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.14

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.91  E-value=5e-24  Score=160.90  Aligned_cols=112  Identities=40%  Similarity=0.769  Sum_probs=107.5

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +|++|.+.|+.||.+||+++|++|++.|++++|.++|+.|.+++|+.||..+|++||++|++.|++++|.++|       
T Consensus       413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p  492 (697)
T PLN03081        413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP  492 (697)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence            5899999999999999999999999999999999999999866899999999999999999999999999999       


Q ss_pred             ----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770           74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT  112 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya  112 (112)
                          |    .+|+.+|+++.|+++++++.+..|++...|++|+++|+
T Consensus       493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence                6    99999999999999999999999999999999999885

>PLN03077 Protein ECB2; Provisional

Probab=99.90  E-value=8.9e-24  Score=162.40  Aligned_cols=112  Identities=43%  Similarity=0.875  Sum_probs=107.7

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +|++|++.|++||.+||+++|++|++.|++++|.++|+.|.+++|+.||..+|++||++|+|.|++++|.+++       
T Consensus       576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p  655 (857)
T PLN03077        576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP  655 (857)
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence            5899999999999999999999999999999999999999955899999999999999999999999999999       


Q ss_pred             ----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770           74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT  112 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya  112 (112)
                          |    .+|..+|+.+.|+.+.+++.++.|+++..|++|+|+|+
T Consensus       656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence                6    89999999999999999999999999999999999985

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=153.35  Aligned_cols=110  Identities=17%  Similarity=0.275  Sum_probs=97.9

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +|++|++.|++||.+||+++|++|++.|++++|.++|+.|.+ .|+.||..+||+||++|+++|++++|.++|       
T Consensus       312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d  390 (697)
T PLN03081        312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN  390 (697)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999999999999999997 899999999999999999999999999999       


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhccc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVH  111 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~y  111 (112)
                         |    .+|+++|+.++|.++|++|.+.+ .++..+|..+.+.|
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~  436 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC  436 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence               6    99999999999999999998633 23444555554443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=1.4e-21  Score=152.39  Aligned_cols=71  Identities=24%  Similarity=0.443  Sum_probs=32.5

Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770            2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus         2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |++|++.|+.||.++||+||++|++.|++++|.++|++|.+ .|+.||..+||+||++|++.|++++|.++|
T Consensus       460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            34444444444444444444444444444444444444443 344444444444444444444444444444

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.86  E-value=2.3e-21  Score=151.13  Aligned_cols=94  Identities=18%  Similarity=0.196  Sum_probs=65.9

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +|++|.+.|+.||.+||+++|++|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|       
T Consensus       636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g  714 (1060)
T PLN03218        636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK  714 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            356677777777777777777777777777777777777775 577777777777777777777777777776       


Q ss_pred             -------H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 -------W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 -------~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                             |    .+|++.|++++|.++|++|.+
T Consensus       715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   3    666777777777777777764

>PLN03077 Protein ECB2; Provisional

Probab=99.85  E-value=1e-20  Score=145.60  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=97.2

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +|++|.+.|++||.+||+++|++|++.|+++.|.+++..|.+ .|+.||..+||+||++|+++|++++|.++|       
T Consensus       275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d  353 (857)
T PLN03077        275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD  353 (857)
T ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence            588999999999999999999999999999999999999997 899999999999999999999999999999       


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhc--CCCCCcchhhhhcc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLEL--QPEHCRRYVVLSNV  110 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~l~~~  110 (112)
                         |    .+|++.|++++|.++|++|.+.  .|+. .++..+...
T Consensus       354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a  398 (857)
T PLN03077        354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSA  398 (857)
T ss_pred             eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHH
Confidence               6    9999999999999999999863  3544 444444433

>PF13041 PPR_2: PPR repeat family

Probab=99.80  E-value=2.2e-19  Score=93.64  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR   62 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~   62 (112)
                      ||+++||++|++|++.|++++|.++|++|.+ .|+.||..||++||++|||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence            8999999999999999999999999999997 8999999999999999986

>PF12854 PPR_1: PPR repeat

Probab=99.48  E-value=6.4e-14  Score=67.23  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770            8 KGLRANEVTFVAVLTACARARLVELGLELFHSLL   41 (112)
Q Consensus         8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~   41 (112)
                      .|+.||.+|||+||+++|+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4888999999999999999999999999998884

>PF12854 PPR_1: PPR repeat

Probab=99.35  E-value=1.5e-12  Score=62.39  Aligned_cols=30  Identities=27%  Similarity=0.340  Sum_probs=28.4

Q ss_pred             cCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           44 FEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        44 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .|+.||.+|||+||++||+.|++++|.++|
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~   30 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELF   30 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHH
Confidence            389999999999999999999999999986

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=99.04  E-value=2.9e-10  Score=53.99  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM   50 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~   50 (112)
                      +|||++|++|++.|++++|.++|++|.+ .|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~-~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLE-RGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCC
Confidence            4899999999999999999999999997 8999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13041 PPR_2: PPR repeat family

Probab=98.99  E-value=6.9e-10  Score=57.41  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=34.2

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhcccC
Q 033770           48 PIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVHT  112 (112)
Q Consensus        48 p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~ya  112 (112)
                      ||+++||+||++|++.|++                 ++|.++|++|.+.+ +++..+|.+|++.|+
T Consensus         1 P~~~~yn~li~~~~~~~~~-----------------~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKF-----------------EEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCH-----------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            8999999999998665554                 45555667887644 456667777776654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.95  E-value=1.1e-09  Score=51.83  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP   48 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p   48 (112)
                      ++|||++|++|++.|+++.|.++|+.|++ .|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~-~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKE-QGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC
Confidence            36999999999999999999999999997 89988

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.79  E-value=8.5e-09  Score=47.67  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCC
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEV   46 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~   46 (112)
                      +|||++|++|++.|++++|.++|++|++ .|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~-~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRE-RGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhH-CcC
Confidence            5899999999999999999999999997 665

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=6.1e-07  Score=64.88  Aligned_cols=93  Identities=22%  Similarity=0.302  Sum_probs=78.0

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHH----HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVE----LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~----~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---   73 (112)
                      |..+|.+..++||..|||+++++-++.|.++    .|.+++.+|++ -|+.|...+|-.+|..++|-++..+..--.   
T Consensus       260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~d  338 (625)
T KOG4422|consen  260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWIND  338 (625)
T ss_pred             HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence            4679999999999999999999999999765    45688899997 899999999999999999999987733322   


Q ss_pred             --------------------H----HHHHhhCChhHHHHHHHHHH
Q 033770           74 --------------------W----SACKIHGAVKLSHEVGKRLL   94 (112)
Q Consensus        74 --------------------~----~~~~~~g~~~~a~~~~~~m~   94 (112)
                                          +    ..|.+..|.+.|..+..-..
T Consensus       339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~  383 (625)
T KOG4422|consen  339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK  383 (625)
T ss_pred             HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                                1    67777788888888876665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.48  E-value=1.9e-06  Score=61.09  Aligned_cols=86  Identities=10%  Similarity=0.019  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H-HHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W-SACK   78 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~-~~~~   78 (112)
                      ..+..+...+.+.|+.++|..+++++.. .+......+++.+..+|.+.|++++|.+.+               + ..+.
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~  293 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE  293 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3444455555555555555555555553 221111334455555555555555555555               0 4455


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCC
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      +.|+.++|..+++++.+..|+++
T Consensus       294 ~~g~~~~A~~~l~~~l~~~P~~~  316 (389)
T PRK11788        294 EQEGPEAAQALLREQLRRHPSLR  316 (389)
T ss_pred             HhCCHHHHHHHHHHHHHhCcCHH
Confidence            55555555555555555445443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.47  E-value=2.6e-06  Score=60.38  Aligned_cols=20  Identities=10%  Similarity=0.135  Sum_probs=7.3

Q ss_pred             HHHHHhccCcHHHHHHHHHH
Q 033770           20 VLTACARARLVELGLELFHS   39 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~   39 (112)
                      +...+.+.|++++|..+++.
T Consensus        75 la~~~~~~g~~~~A~~~~~~   94 (389)
T PRK11788         75 LGNLFRRRGEVDRAIRIHQN   94 (389)
T ss_pred             HHHHHHHcCcHHHHHHHHHH
Confidence            33333333333333333333

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.39  E-value=2.4e-07  Score=71.37  Aligned_cols=88  Identities=18%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---H----
Q 033770            2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---W----   74 (112)
Q Consensus         2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---~----   74 (112)
                      +-.|+..|+.||.+||.++|.-||..|+++.|- +|.-|+- .....+-..++.++.+..++|+.+.+.+-.   |    
T Consensus        13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll   90 (1088)
T KOG4318|consen   13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL   90 (1088)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence            467889999999999999999999999999998 9999885 466668888899999999999988888776   6    


Q ss_pred             HHHHhhCChhHHHHHHH
Q 033770           75 SACKIHGAVKLSHEVGK   91 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~   91 (112)
                      .+|.++||+..-+.+=+
T Consensus        91 ~ayr~hGDli~fe~veq  107 (1088)
T KOG4318|consen   91 KAYRIHGDLILFEVVEQ  107 (1088)
T ss_pred             HHHHhccchHHHHHHHH
Confidence            88889988776444433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.33  E-value=9.6e-06  Score=61.93  Aligned_cols=57  Identities=12%  Similarity=-0.008  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..+..+...+.+.|+.++|..+++.+..  ..+.+...|..+...|.+.|++++|.+.|
T Consensus       568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  624 (899)
T TIGR02917       568 EPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSF  624 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3344444444444444444444444442  22234444445555555555555555444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.26  E-value=1.7e-05  Score=60.63  Aligned_cols=96  Identities=20%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      .+..++..+...+.+.|+.++|..+++++.. . -+.+...+..+...|.+.|++++|.+++             |    
T Consensus       531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  608 (899)
T TIGR02917       531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAE-L-NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG  608 (899)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3555666666666677777777777777653 2 2335566667777777777777777776             2    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      ..+...|++++|...++++.+..|.++..+..+..
T Consensus       609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  643 (899)
T TIGR02917       609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD  643 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            66667778888888888777777766655544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.19  E-value=1.4e-06  Score=39.90  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHH
Q 033770           51 EHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        51 ~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ++||+||++|++.|++++|.++|
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~   23 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVF   23 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHH
Confidence            47999999999999999998886

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.18  E-value=4.5e-05  Score=47.65  Aligned_cols=93  Identities=12%  Similarity=-0.020  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770           10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W-   74 (112)
Q Consensus        10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~-   74 (112)
                      +.|+.  +..+-.++.+.|++++|...|+....   ..| +...|..+-..+.+.|++++|...|             | 
T Consensus        22 ~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~   96 (144)
T PRK15359         22 VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVY   96 (144)
T ss_pred             cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence            34554  45566777899999999999999874   334 7888899999999999999999999             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                         .++...|+.++|...++...+..|+++..+...
T Consensus        97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~  132 (144)
T PRK15359         97 QTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR  132 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence               778889999999999999999999988877554

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.15  E-value=1.1e-05  Score=53.72  Aligned_cols=71  Identities=17%  Similarity=0.297  Sum_probs=59.8

Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHhccC----------------cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770            2 VDEMYEKGLRANEVTFVAVLTACARAR----------------LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL   65 (112)
Q Consensus         2 ~~~M~~~g~~p~~~t~~~li~~~~~~~----------------~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~   65 (112)
                      ++.|.+.|+.-|..+|+.||+.+=+..                +-+-|..++++|.. +|+.||..++..|+..|++.+.
T Consensus        75 L~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen   75 LKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence            468999999999999999999887532                24778999999997 9999999999999999999998


Q ss_pred             hhH-HHHHH
Q 033770           66 LSE-ANEFL   73 (112)
Q Consensus        66 ~~~-A~~~f   73 (112)
                      .-. ..++.
T Consensus       154 p~~K~~rmm  162 (228)
T PF06239_consen  154 PMKKYRRMM  162 (228)
T ss_pred             HHHHHHHHH
Confidence            543 33433

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.15  E-value=1.7e-05  Score=47.66  Aligned_cols=62  Identities=19%  Similarity=0.310  Sum_probs=53.3

Q ss_pred             ChHHHhhcCC-CCCHHHHHHHHHHHhccCc--------HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc
Q 033770            1 MVDEMYEKGL-RANEVTFVAVLTACARARL--------VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA   63 (112)
Q Consensus         1 l~~~M~~~g~-~p~~~t~~~li~~~~~~~~--------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~   63 (112)
                      +|+.+++.|+ .|+..+|+.+|.+-++...        +-..+.+++.|.. .+++|+..|||.+|..+.+.
T Consensus        47 lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etYnivl~~Llkg  117 (120)
T PF08579_consen   47 LYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETYNIVLGSLLKG  117 (120)
T ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHh
Confidence            4778899999 9999999999999886533        4567889999997 89999999999999987653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=2.4e-05  Score=56.86  Aligned_cols=87  Identities=10%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------
Q 033770            3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------   73 (112)
Q Consensus         3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------   73 (112)
                      ++=.+...+.+..+||.+|.+-+-+.+    ..+..+|.+ ..+.||..|+|++++.-++.|+++.|.+-+         
T Consensus       231 kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe  305 (625)
T KOG4422|consen  231 KEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE  305 (625)
T ss_pred             HHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            344445567888888888876554333    678899997 799999999999999999999999998887         


Q ss_pred             ---------H----HHHHhhCCh-hHHHHHHHHHH
Q 033770           74 ---------W----SACKIHGAV-KLSHEVGKRLL   94 (112)
Q Consensus        74 ---------~----~~~~~~g~~-~~a~~~~~~m~   94 (112)
                               |    ..+++.++. +.+..+..++.
T Consensus       306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~  340 (625)
T KOG4422|consen  306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ  340 (625)
T ss_pred             hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence                     2    666666665 44666666665

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.09  E-value=3.5e-06  Score=39.44  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHH
Q 033770           51 EHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        51 ~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+||+||++|++.|++++|.++|
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~   23 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELF   23 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHH
Confidence            37899999988888887777775

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.00  E-value=0.00018  Score=46.46  Aligned_cols=57  Identities=12%  Similarity=0.102  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..+..+-..+...|++++|...+++..+ .. +.+...+..+...|...|++++|.+.|
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~  122 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNYGTFLCQQGKYEQAMQQF  122 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3444444444445555555555544442 11 113333444444444444444444444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.96  E-value=0.00024  Score=45.90  Aligned_cols=90  Identities=12%  Similarity=0.026  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+...|++++|...+++.........+...+..+-..|.+.|++++|.+.|             |    .
T Consensus        98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  177 (234)
T TIGR02521        98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE  177 (234)
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence            4445556666666677777777777766541111223345555666666777777776666             1    4


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .+...|+.++|.+.+++..+..|.++.
T Consensus       178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~  204 (234)
T TIGR02521       178 LYYLRGQYKDARAYLERYQQTYNQTAE  204 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            555666777777777766655444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.93  E-value=0.00028  Score=42.88  Aligned_cols=92  Identities=12%  Similarity=0.034  Sum_probs=75.4

Q ss_pred             CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770           10 LRANE-VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-   74 (112)
Q Consensus        10 ~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-   74 (112)
                      ..|+. .....+-..+.+.|+.++|.+.++.... .+ ..+...|..+-..|.+.|++++|.+++             | 
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   89 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-YD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF   89 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            34533 4455677788899999999999999875 32 347788888999999999999999998             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                         ..+...|+.+.|...++...+..|++...
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        90 HAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence               77888999999999999999999887653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.91  E-value=1.4e-05  Score=37.28  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHH
Q 033770           51 EHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        51 ~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+||++|++|++.|+++.|.++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~   24 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLF   24 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHH
Confidence            68999999998888888877765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.90  E-value=6.9e-05  Score=51.33  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=72.6

Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770           10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W-   74 (112)
Q Consensus        10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~-   74 (112)
                      .++|...|..+-..+.+.|+.++|.+.+++..+   ..| |....+.++..+...|+.+++.+++             | 
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD  218 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence            456777777788888888888888888888764   245 4667788888888888888877777             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                         .++...|+.++|...+++..+..|+++.....+..
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~  256 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD  256 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred             HHHHHhcccccccccccccccccccccccccccccccc
Confidence               77888899999999999999888988876655543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.87  E-value=4.8e-05  Score=55.44  Aligned_cols=57  Identities=19%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |..++|+.|-+.|..+++..+...=.. +|+-||..|+|.||+.+.+.|++..|.+++
T Consensus       105 t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~  161 (429)
T PF10037_consen  105 THHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVA  161 (429)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence            445999999999999999999988776 999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00074  Score=36.87  Aligned_cols=80  Identities=19%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHh
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKI   79 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~   79 (112)
                      +..+-..+...|++++|...++...+ . ...+...+..+-..+...|++++|.+.|             |    ..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE-L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            44566677788999999999999875 2 2234467788888899999999999998             2    66777


Q ss_pred             hCChhHHHHHHHHHHhcCC
Q 033770           80 HGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        80 ~g~~~~a~~~~~~m~~~~~   98 (112)
                      .|+.+.|...++...+..|
T Consensus        81 ~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          81 LGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHhHHHHHHHHHHHHccCC
Confidence            8899999999988876555

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.68  E-value=0.00019  Score=49.11  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H-
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W-   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~-   74 (112)
                      ++...+..++..+.+.++++++..+++.........++...|..+-..+.+.|+.++|.+.+                + 
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            55666777777788888888888888887643334567777778888888888888888887                1 


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+...|+.+++.++++...+..|+++..+..+.
T Consensus       188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred             HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            4556677778777888777766666666554443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.67  E-value=0.0023  Score=37.58  Aligned_cols=89  Identities=8%  Similarity=0.061  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------H----
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------W----   74 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------~----   74 (112)
                      ++-.+...+.+.|++++|...++.+.+...-.| ....+..+...+.+.|++++|.+.|                |    
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            345566677888999999999999985221111 2346667889999999999999999                1    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      ..+...|+.+.|...++++.+..|+++...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            677788999999999999998888765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.64  E-value=0.001  Score=50.43  Aligned_cols=56  Identities=13%  Similarity=0.001  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +|..+-..+...|++++|...+++... . -+-+...|..+-..|...|++++|.+.|
T Consensus       367 ~~~~la~~~~~~g~~~eA~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       367 SYIKRASMNLELGDPDKAEEDFDKALK-L-NSEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            333344444444444444444444432 1 1113344444444444444444444444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.63  E-value=0.0029  Score=41.59  Aligned_cols=94  Identities=14%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHH-HHhcCC--hhHHHHHH-------------
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDL-LGRAGL--LSEANEFL-------------   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~-~~~~g~--~~~A~~~f-------------   73 (112)
                      +.|...|..+=..+...|+.++|...+++..+   +.| +...+..+-.+ |.+.|+  .++|.+++             
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a  146 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA  146 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence            56788888998999999999999999998875   334 77777777776 477787  48999999             


Q ss_pred             H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      +    ..+...|++++|...++++.+..|++...+.++
T Consensus       147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            2    677789999999999999999888776665544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.52  E-value=0.0022  Score=48.75  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      +...|+.+-..+...|++++|...+++...   ..|+ ...|..+-..+...|++++|.+.|             |    
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345677777778889999999999999874   3454 567888888999999999999998             3    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+...|+.++|...|++..+..|++...+..+.
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            6777889999999999999998888766555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.51  E-value=0.002  Score=49.55  Aligned_cols=47  Identities=9%  Similarity=-0.104  Sum_probs=21.6

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhH
Q 033770           20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSE   68 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~   68 (112)
                      +..++.+.|+.++|...+++... .. ..+...+..+-..|.+.|++++
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~-~~-p~~~~~~~~Lg~~l~~~G~~~e  264 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA-RG-LDGAALRRSLGLAYYQSGRSRE  264 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCchh
Confidence            33444455555555555555443 11 1133444444455555555543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.47  E-value=0.0025  Score=50.24  Aligned_cols=105  Identities=15%  Similarity=0.115  Sum_probs=55.1

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC----CCcCHHHHHHHHHHHHhcCChhHHHHHH-----
Q 033770            3 DEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFE----VVPIMEHYGCVVDLLGRAGLLSEANEFL-----   73 (112)
Q Consensus         3 ~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~f-----   73 (112)
                      +.|+..|.+.-..+--.+-++|...+..++|..++.......+    ..++......|.-+|...+++++|..++     
T Consensus       316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~  395 (822)
T PRK14574        316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE  395 (822)
T ss_pred             HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            4444455442333444556666666666666666666543211    1223333455666666666666666665     


Q ss_pred             -------------------H--------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 -------------------W--------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 -------------------~--------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                                         |        ..+...|+..+|++.++++....|.++.....+
T Consensus       396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~  456 (822)
T PRK14574        396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL  456 (822)
T ss_pred             cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                               2        334555666666666666655556555544433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.40  E-value=0.0018  Score=39.73  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHh--------------hhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSL--------------LGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m--------------~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |..++.++|-+++..|+++....+.+..              .......||..+-.+++.+|+..|++..|++++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~v   75 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLV   75 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHH
Confidence            5778999999999999999988887653              112346789999999999999999999999998

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.40  E-value=0.0013  Score=37.08  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=39.2

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---HHHHhhCChhHHHHHH
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---SACKIHGAVKLSHEVG   90 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---~~~~~~g~~~~a~~~~   90 (112)
                      .|+++.|..+++++.....-.|+...+-.+-..|.+.|++++|.+++             |   .+|-+.|+.++|.+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            35667777777777642111123334444667777777777777776             1   6666777777777766


Q ss_pred             HH
Q 033770           91 KR   92 (112)
Q Consensus        91 ~~   92 (112)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.39  E-value=0.0026  Score=45.45  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      .....|++++|...+.+..+ . -.-+...|..+-.+|.+.|++++|...+             |    .+|...|+++.
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~-~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAID-L-DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            34567899999999998875 2 2226677778888899999999999988             2    67778899999


Q ss_pred             HHHHHHHHHhcCCCCCcchhhh
Q 033770           86 SHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      |...|++..++.|.++.....+
T Consensus        89 A~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         89 AKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999998888876655443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.39  E-value=0.0022  Score=46.57  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC   77 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~   77 (112)
                      ....+|++.+...++++.|..+|+++.+ ..  |++  ...|.+.+...++-.+|.+++             +    +-|
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445677778888999999999999986 33  553  445888888889999999988             1    667


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      .+.++.+.|.++.++..+..|.+..+|..|+..|
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y  278 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECY  278 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            7888999999999999999999888888887766

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.36  E-value=0.00069  Score=36.18  Aligned_cols=60  Identities=18%  Similarity=0.138  Sum_probs=35.4

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                      ..+.+.|++++|...|++..+ ..  | +...+..+-                 ..+...|+.++|...|++..+..|++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~-~~--P~~~~a~~~lg-----------------~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALK-QD--PDNPEAWYLLG-----------------RILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHC-CS--TTHHHHHHHHH-----------------HHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-HC--CCCHHHHHHHH-----------------HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345677788888888887775 22  4 333333333                 45556667777777777777666665


Q ss_pred             C
Q 033770          101 C  101 (112)
Q Consensus       101 ~  101 (112)
                      |
T Consensus        65 p   65 (65)
T PF13432_consen   65 P   65 (65)
T ss_dssp             H
T ss_pred             C
Confidence            3

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.33  E-value=0.0011  Score=50.08  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             CCCCCHHHHHH---HHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770            9 GLRANEVTFVA---VLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------   73 (112)
Q Consensus         9 g~~p~~~t~~~---li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------   73 (112)
                      .+++|.-.||+   +=-.|.|.+.++.|+-.|++..   .+.| +.+.-..+-..+-+.|+.|+|.+++           
T Consensus       481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            46677777776   4445679999999999998865   4677 7777788888999999999999999           


Q ss_pred             ---H---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           74 ---W---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        74 ---~---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                         |   ..+-..++.++|...++++++..|++...+.++-.+|
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~  601 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY  601 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence               2   5666778999999999999999999988888776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.29  E-value=0.0054  Score=49.30  Aligned_cols=72  Identities=19%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHH
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVG   90 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~   90 (112)
                      |++++|...+++..+   ..|+...|..+-..+.+.|+.++|.+.+             +    ..+...|+.++|...+
T Consensus       590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            444444444444432   2234444444445555555555555554             0    3344445555555555


Q ss_pred             HHHHhcCCCCCc
Q 033770           91 KRLLELQPEHCR  102 (112)
Q Consensus        91 ~~m~~~~~~~~~  102 (112)
                      +...+..|+++.
T Consensus       667 ~~AL~l~P~~~~  678 (987)
T PRK09782        667 ERAHKGLPDDPA  678 (987)
T ss_pred             HHHHHhCCCCHH
Confidence            555544454443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.23  E-value=0.0049  Score=47.43  Aligned_cols=83  Identities=20%  Similarity=0.155  Sum_probs=43.4

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH-
Q 033770           24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL-   85 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~-   85 (112)
                      +.+.|++++|...++.+.. ..-.++...+..+...+.+.|++++|.+.+             +    ..+...|+.++ 
T Consensus       187 l~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        187 FLNKSRLPEDHDLARALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence            4455555555555555443 221223333344455566666666666666             1    44455566654 


Q ss_pred             ---HHHHHHHHHhcCCCCCcchhhh
Q 033770           86 ---SHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        86 ---a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                         |...+++..+..|+++..+..+
T Consensus       266 ~~~A~~~~~~Al~l~P~~~~a~~~l  290 (656)
T PRK15174        266 KLQAAEHWRHALQFNSDNVRIVTLY  290 (656)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHH
Confidence               5666666666666554444333

>PRK12370 invasion protein regulator; Provisional

Probab=97.22  E-value=0.0075  Score=45.43  Aligned_cols=56  Identities=18%  Similarity=-0.064  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..+..+=..+...|++++|...+++..+ .  .| +...+..+-..|...|++++|.+.+
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANL-L--SPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3333443344455555555555555543 1  22 2334444455555555555555555

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.17  E-value=0.01  Score=47.71  Aligned_cols=91  Identities=11%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770            9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W   74 (112)
Q Consensus         9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~   74 (112)
                      .+.|+...|..+-..+.+.|+.++|...+++...   ..| +...++.+-..+.+.|+.++|.+.+             |
T Consensus       604 ~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~  680 (987)
T PRK09782        604 NIAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI  680 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3468888899999999999999999999999875   345 5666778888999999999999998             2


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                          .++...|+.++|+..+++..+..|+...
T Consensus       681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence                7888999999999999999998887643

>PRK12370 invasion protein regulator; Provisional

Probab=97.15  E-value=0.0079  Score=45.32  Aligned_cols=95  Identities=11%  Similarity=-0.093  Sum_probs=65.2

Q ss_pred             CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH-HHHHHHHHHHHhcCChhHHHHHH--------------H
Q 033770           11 RAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM-EHYGCVVDLLGRAGLLSEANEFL--------------W   74 (112)
Q Consensus        11 ~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f--------------~   74 (112)
                      .|| ...+..+-..+...|+.++|...+++..+   ..|+. ..+..+...+...|++++|.+.+              +
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~  444 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL  444 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence            454 45677777788889999999999998875   23432 22333444566688889888877              1


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                          ..+...|+.++|...++++....|.+......|.
T Consensus       445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~  482 (553)
T PRK12370        445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY  482 (553)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence                5666789999999998887665565544444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.12  E-value=0.016  Score=40.36  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      |..+=..+...|+.++|...|.+..+   ..| +...|+.+-..|.+.|++++|.+.|             |    ..+.
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44444456677788888877777664   234 5677777777788888888888777             2    4455


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCC
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      ..|+.++|.+.|+...+..|+++
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCH
Confidence            66778888888777777777665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.11  E-value=0.00025  Score=38.16  Aligned_cols=46  Identities=22%  Similarity=0.200  Sum_probs=33.3

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+.|++++|..++++....   .| +...+-.+...|.+.|++++|.+++
T Consensus         2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l   48 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELL   48 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3578899999999998752   23 6666667777777777777777765

...

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.11  E-value=0.004  Score=37.59  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=61.3

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhhccCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHh-
Q 033770           18 VAVLTACARARLVELGLELFHSLLGEFEV-VPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLE-   95 (112)
Q Consensus        18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~-   95 (112)
                      ..-|..|...+++.....+++.+++ .|+ .|++.+||.++++-++..--.+         ...+.+-..+.++++|.. 
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~---------~ie~kl~~LLtvYqDiL~~   98 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSE---------DIENKLTNLLTVYQDILSN   98 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccch---------hHHHHHHHHHHHHHHHHHh
Confidence            4577788888999999999999998 899 9999999999999887654222         334466677788888874 


Q ss_pred             -cCCCCCcchhhh
Q 033770           96 -LQPEHCRRYVVL  107 (112)
Q Consensus        96 -~~~~~~~~~~~l  107 (112)
                       +.|++..+..++
T Consensus        99 ~lKP~~etYnivl  111 (120)
T PF08579_consen   99 KLKPNDETYNIVL  111 (120)
T ss_pred             ccCCcHHHHHHHH
Confidence             667655544444

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.06  E-value=0.0021  Score=44.85  Aligned_cols=66  Identities=15%  Similarity=0.261  Sum_probs=56.7

Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHhccCc----------------HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770            2 VDEMYEKGLRANEVTFVAVLTACARARL----------------VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL   65 (112)
Q Consensus         2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~----------------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~   65 (112)
                      ++.|++.|+.-|..+|+.||+.+=|..-                -+=+..++++|.. .|+.||-.+--.||.+|++-|.
T Consensus        95 Lk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen   95 LKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence            4679999999999999999998876543                2346789999996 8999999999999999999998


Q ss_pred             hhH
Q 033770           66 LSE   68 (112)
Q Consensus        66 ~~~   68 (112)
                      .-+
T Consensus       174 p~~  176 (406)
T KOG3941|consen  174 PTK  176 (406)
T ss_pred             cHH
Confidence            543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.00  E-value=0.015  Score=45.44  Aligned_cols=86  Identities=7%  Similarity=-0.150  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      .+..+...+...|+.++|..+++++..  .-+-+...+..+...+.+.|++++|++.+             +    ....
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            445667788899999999999999875  33447788899999999999999999999             1    5667


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      ..|++++|+.+++++.+..|+++..
T Consensus       439 ~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            7889999999999999999988754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.99  E-value=0.0093  Score=41.28  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=18.6

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ++.+.|..+|+...+  -+..+...|..=|+-+.+.|+.+.|..+|
T Consensus        50 ~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~l~~~~d~~~aR~lf   93 (280)
T PF05843_consen   50 KDPKRARKIFERGLK--KFPSDPDFWLEYLDFLIKLNDINNARALF   93 (280)
T ss_dssp             S-HHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            334444555544443  23334444444444444445555555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.99  E-value=0.014  Score=45.66  Aligned_cols=94  Identities=16%  Similarity=0.026  Sum_probs=70.6

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H----H
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W----S   75 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~----~   75 (112)
                      .+...+..+-.++.+.|++++|..++++... . -+.+...+..+...+.+.|++++|.+.+            |    .
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~  124 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALS-L-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAY  124 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3444677888888888999999888888764 1 2224556678888888889999888888            2    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .+...|+.+.|...+++..+..|+++.....+
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l  156 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEY  156 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            66778888999999998888888876654433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.98  E-value=0.026  Score=35.98  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +...+..+-..+...|++++|...|++... ..-.+.  ...+..+-..|.+.|++++|.+.+             |   
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344567777788889999999999999875 332222  467788889999999999999998             1   


Q ss_pred             -HHHHhhCC--------------hhHHHHHHHHHHhcCCCC
Q 033770           75 -SACKIHGA--------------VKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        75 -~~~~~~g~--------------~~~a~~~~~~m~~~~~~~  100 (112)
                       ..+...|+              .++|.+.+++..+.+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence             34444444              466777777777777765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.97  E-value=0.014  Score=47.59  Aligned_cols=91  Identities=11%  Similarity=0.061  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHH------------HHHHHhcCChhHHHHHH-------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCV------------VDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~~f-------   73 (112)
                      |...+..+-..+.+.|+.++|...|++..+...-.+....|..+            -..+.+.|++++|.+.|       
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            55666667777777778888877777766411111111122222            23456777777777777       


Q ss_pred             ------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           74 ------W----SACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        74 ------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                            +    ..+...|+.++|++.|++..+..|.+...
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a  421 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA  421 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence                  1    56667778888888888777777766543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.89  E-value=0.0048  Score=32.98  Aligned_cols=47  Identities=26%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             hcCChhHHHHHH----------------H-HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           62 RAGLLSEANEFL----------------W-SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        62 ~~g~~~~A~~~f----------------~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      +.|++++|.++|                + ..|.+.|++++|.++++.+....|+++..+.++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            567777777777                1 7777778888888888877777776655555543

...

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.85  E-value=0.006  Score=40.87  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             CCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---HHHHHhh
Q 033770            9 GLRANEVTFVAVLTACARA-----RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---WSACKIH   80 (112)
Q Consensus         9 g~~p~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---~~~~~~~   80 (112)
                      +-.-|..+|..+|..|.+.     |.++=....+.+|.+ +|+.-|..+|+.|++.+=+ |.+- -..+|   |--|  .
T Consensus        42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy--p  116 (228)
T PF06239_consen   42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY--P  116 (228)
T ss_pred             hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC--c
Confidence            3467899999999999854     778888888999996 9999999999999999987 4433 33444   3222  2


Q ss_pred             CChhHHHHHHHHHHhcC-CCCCcchhhhhccc
Q 033770           81 GAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVH  111 (112)
Q Consensus        81 g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~y  111 (112)
                      .+.+-|..++++|...+ -++..++.+|.+++
T Consensus       117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF  148 (228)
T PF06239_consen  117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIF  148 (228)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence            35677888999998744 23445566666554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.84  E-value=0.0096  Score=43.92  Aligned_cols=83  Identities=23%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHH
Q 033770           26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSH   87 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~   87 (112)
                      ..|..++|+..+..+..  . .| |+.-+....+-+.+.++..+|.+.+             |    .++.+.|++.+|.
T Consensus       318 ~~~~~d~A~~~l~~L~~--~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         318 LAGQYDEALKLLQPLIA--A-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HhcccchHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence            56788888888888764  2 45 4444457778889999999999888             2    8888889999999


Q ss_pred             HHHHHHHhcCCCCCcchhhhhccc
Q 033770           88 EVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        88 ~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      .+++......|+++..|-+|...|
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay  418 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAY  418 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHH
Confidence            988888888898998888887665

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.67  E-value=0.0064  Score=44.61  Aligned_cols=56  Identities=5%  Similarity=-0.021  Sum_probs=49.8

Q ss_pred             hcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc
Q 033770            7 EKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA   63 (112)
Q Consensus         7 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~   63 (112)
                      ..|+-||.+|||.||+.+.+.|++..|.++...|.. .+...+..|+..-+.++.+.
T Consensus       131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence            469999999999999999999999999999999886 57777888888888887777

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.65  E-value=0.04  Score=45.05  Aligned_cols=89  Identities=10%  Similarity=-0.030  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +++...+..+-..+.+.|+.++|...+++..+ . -+.+...+..+...|...|+.++|.+.+             +   
T Consensus       600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l  677 (1157)
T PRK11447        600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-R-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV  677 (1157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence            34555666777888899999999999999875 2 2236788889999999999999999998             1   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                       ..+...|+.++|.++++.+.+..|+++
T Consensus       678 a~~~~~~g~~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        678 ALAWAALGDTAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence             666788999999999999887655443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.63  E-value=0.012  Score=36.06  Aligned_cols=58  Identities=9%  Similarity=0.048  Sum_probs=51.3

Q ss_pred             cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCC
Q 033770            8 KGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGL   65 (112)
Q Consensus         8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~   65 (112)
                      ..+.|+..+..+++.+|+..+++..|+++.+...+.+++..+...|..|+...-...+
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            4578999999999999999999999999999999889998899999988887655444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.60  E-value=0.017  Score=45.71  Aligned_cols=81  Identities=15%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCcCH--HHHHHHHHHHHhcCChhHHHHHH---------H--------HHHHhhCChhH
Q 033770           25 ARARLVELGLELFHSLLGEFEVVPIM--EHYGCVVDLLGRAGLLSEANEFL---------W--------SACKIHGAVKL   85 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~f---------~--------~~~~~~g~~~~   85 (112)
                      .+.|+++.|+..|++..+   ..|+.  ..+ .++..+...|+.++|...+         +        ..+...|++++
T Consensus        45 ~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            467889999999988764   34543  233 8888888889999999987         1        46667799999


Q ss_pred             HHHHHHHHHhcCCCCCcchhhhhc
Q 033770           86 SHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      |.++++++.+..|+++..+..|..
T Consensus       121 Aiely~kaL~~dP~n~~~l~gLa~  144 (822)
T PRK14574        121 ALALWQSSLKKDPTNPDLISGMIM  144 (822)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHH
Confidence            999999999888988766654443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.59  E-value=0.024  Score=35.33  Aligned_cols=56  Identities=11%  Similarity=-0.138  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           52 HYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        52 ~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .+..+-..+.+.|++++|.+.|             |    ..+.+.|+.++|...|+...+.+|.++..+.-+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3556677889999999999999             3    678889999999999999999999887766544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.52  E-value=0.0036  Score=30.97  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+...|++++|++++++..+..|+++..+..|.
T Consensus         9 ~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    9 RAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            6778899999999999999999999987766654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.52  E-value=0.072  Score=37.37  Aligned_cols=79  Identities=13%  Similarity=0.051  Sum_probs=61.4

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------H---HH
Q 033770           18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------W---SA   76 (112)
Q Consensus        18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------~---~~   76 (112)
                      ..+-..+...|++++|...+++... . -+.+...+..+-..|.+.|++++|.+.+                  |   ..
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~-~-~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALE-L-NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            3444567788999999999999875 2 2335667788888999999999999997                  2   56


Q ss_pred             HHhhCChhHHHHHHHHHHhcCC
Q 033770           77 CKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                      +...|+.++|..++++.....|
T Consensus       196 ~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         196 YLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhcccc
Confidence            6788999999999998865444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.51  E-value=0.036  Score=36.45  Aligned_cols=80  Identities=11%  Similarity=0.096  Sum_probs=59.9

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH-HHhhCC--hhHHH
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA-CKIHGA--VKLSH   87 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~-~~~~g~--~~~a~   87 (112)
                      ++.+++...++...+  .-+.|...|..|-..|...|++++|.+.|             |    .+ +...|+  .++|.
T Consensus        53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            344555555555443  22348889999999999999999999999             2    33 356666  59999


Q ss_pred             HHHHHHHhcCCCCCcchhhhhc
Q 033770           88 EVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        88 ~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      +++++..+.+|+++..+..|..
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHH
Confidence            9999999999999887776654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.51  E-value=0.021  Score=39.86  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHH
Q 033770           25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLS   86 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a   86 (112)
                      .+.+++.+|...+.+.+.   +.| |.+-|.-=-.+|++.|+++.|.+=.             |    .+|...|+.++|
T Consensus        92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            367888999999988874   455 6666677778899999999988876             3    677777899999


Q ss_pred             HHHHHHHHhcCCCCCcchh
Q 033770           87 HEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        87 ~~~~~~m~~~~~~~~~~~~  105 (112)
                      .+.|++..+++|++.++..
T Consensus       169 ~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHhhhccCCCcHHHHH
Confidence            9999999999999876543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.46  E-value=0.02  Score=30.31  Aligned_cols=30  Identities=10%  Similarity=0.055  Sum_probs=23.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLG   42 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~   42 (112)
                      +.-.+..+=..+.+.|++++|...|++...
T Consensus        30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen   30 NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566677777888899999999999998864

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.41  E-value=0.052  Score=33.64  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=47.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhhccCCCcCH--HHHHHHHHHHHhcCChhHHHHHH-------H---------HHHHhhC
Q 033770           20 VLTACARARLVELGLELFHSLLGEFEVVPIM--EHYGCVVDLLGRAGLLSEANEFL-------W---------SACKIHG   81 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~f-------~---------~~~~~~g   81 (112)
                      +=..+...|++++|...|+.... ..-.|+.  ...--|-..+...|++++|...+       |         ..+.+.|
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCC
Confidence            33566677888888888887775 3422221  12234556677778888888877       2         7777778


Q ss_pred             ChhHHHHHHHH
Q 033770           82 AVKLSHEVGKR   92 (112)
Q Consensus        82 ~~~~a~~~~~~   92 (112)
                      +.++|...|+.
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            88888777764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.41  E-value=0.059  Score=36.91  Aligned_cols=78  Identities=10%  Similarity=-0.011  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      .-+.........|++..|...|.+..+  .=++|...||.+=-+|-+.|++++|..-+             .    -.+.
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence            333456666666777777777766653  44556777777766777777776666665             0    3344


Q ss_pred             hhCChhHHHHHHHHHHh
Q 033770           79 IHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~   95 (112)
                      -.|+.+.|+.++..-..
T Consensus       180 L~gd~~~A~~lll~a~l  196 (257)
T COG5010         180 LRGDLEDAETLLLPAYL  196 (257)
T ss_pred             HcCCHHHHHHHHHHHHh
Confidence            55677777766666554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.39  E-value=0.089  Score=36.26  Aligned_cols=86  Identities=10%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH----HHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM----EHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ...|...+.-..+.|++++|...|+.....+   |+.    ..+--+-..|-..|++++|...|                
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            4567777776677899999999999998632   432    45567778899999999999999                


Q ss_pred             H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 W----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      |    ..+...|+.+.|.+.++++.+.-|+...
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            1    5666889999999999999987786543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.37  E-value=0.021  Score=30.55  Aligned_cols=56  Identities=20%  Similarity=0.113  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcC-ChhHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAG-LLSEANE   71 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~   71 (112)
                      +..+|..+=..+.+.|++++|+..|.+..+ .  .| +...|.-+=.+|.+.| ++++|.+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~--~p~~~~~~~~~g~~~~~~~~~~~~A~~   59 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-L--DPNNAEAYYNLGLAYMKLGKDYEEAIE   59 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-H--STTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c--CCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence            345566666667777888888888887775 2  23 4444444444454444 3444444

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.33  E-value=0.11  Score=34.47  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH----------------H-
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------W-   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------~-   74 (112)
                      ....+-.+...+.+.|++++|...+++......-.|. ...+..+-..|-+.|++++|.+.+                | 
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            4556667777888999999999999998752111121 246677888999999999999999                1 


Q ss_pred             ---HHHHh--------hCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 ---SACKI--------HGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ---~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                         ..+..        .|+.+.|.+.++.+.+..|+++...
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence               22222        2678899999999998888875543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.32  E-value=0.13  Score=32.52  Aligned_cols=59  Identities=12%  Similarity=0.032  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ...|..+...+...|++++|...|.+... ..-.|  ...+|..+=..|.+.|++++|.+.+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45567777777888999999999999874 22222  2357888888999999999999998

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.30  E-value=0.014  Score=31.55  Aligned_cols=62  Identities=21%  Similarity=0.111  Sum_probs=36.3

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                      ..+.+.+++++|..+++++.. .  .| ++..|...=                 ..+.+.|+++.|.+.++...+..|++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~-~--~p~~~~~~~~~a-----------------~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE-L--DPDDPELWLQRA-----------------RCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH-h--CcccchhhHHHH-----------------HHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            456777888888888888774 2  33 333333333                 34455566666666666666656655


Q ss_pred             Ccc
Q 033770          101 CRR  103 (112)
Q Consensus       101 ~~~  103 (112)
                      +..
T Consensus        63 ~~~   65 (73)
T PF13371_consen   63 PDA   65 (73)
T ss_pred             HHH
Confidence            443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.25  E-value=0.061  Score=38.96  Aligned_cols=87  Identities=10%  Similarity=-0.047  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--H--------------
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--W--------------   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--~--------------   74 (112)
                      +.+......+..++...|+.++|..++++..+   ..||..  -.++.+....|+.+++.+..  |              
T Consensus       260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34566666777777788888888888877653   233431  12334444557777777777  2              


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                       ..|.+.+++++|.+.|+...+..|++..
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence             7778888899999999988887776544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.25  E-value=0.072  Score=41.52  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHHHhcCChhHHHHHH--------------H--
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHY-GCVVDLLGRAGLLSEANEFL--------------W--   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~f--------------~--   74 (112)
                      .+.-.+-.|-..-.+.|..|+|..+++...+   +.||.... -.+...+.+.+++++|...+              .  
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            3444444555555566666666666666542   34533332 45555566666666666655              1  


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                       .++.+.|+.++|..+|++....+|+++.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~  189 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFEN  189 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence             4555556666666666666554444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.23  E-value=0.21  Score=34.71  Aligned_cols=82  Identities=21%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770           11 RA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus        11 ~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      .| +...|+.+=..+.+.|++++|...|++..+   +.| +...|.-+-..+...|++++|.+.|               
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  170 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL  170 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44 567888888999999999999999999874   345 5677777888889999999999998               


Q ss_pred             H-HHHHhhCChhHHHHHHHHHHh
Q 033770           74 W-SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 ~-~~~~~~g~~~~a~~~~~~m~~   95 (112)
                      | ......++.++|...+++...
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHh
Confidence            2 233456789999999976543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.20  E-value=0.11  Score=37.13  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=34.9

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhccCCCcCH--HHHHHHHHHHHhcCChhHHHHHH
Q 033770           19 AVLTACARARLVELGLELFHSLLGEFEVVPIM--EHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +|=+-|-+.|.+|.|+++++.+.+..+...+-  ..--.|=.-|-.+|-+|.|+++|
T Consensus        74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f  130 (389)
T COG2956          74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF  130 (389)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            45566777788888888888877532221111  11224555677888888888888

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.19  E-value=0.12  Score=37.73  Aligned_cols=89  Identities=12%  Similarity=0.036  Sum_probs=68.9

Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------
Q 033770            2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------   73 (112)
Q Consensus         2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------   73 (112)
                      |+++.+..  |+...  .+.+.+...++-.+|.++..+...  ..+-|....+.-.+-+.+.|+.+.|.++.        
T Consensus       192 le~L~~~~--pev~~--~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP  265 (395)
T PF09295_consen  192 LEKLRERD--PEVAV--LLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP  265 (395)
T ss_pred             HHHHHhcC--CcHHH--HHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            55555553  66443  477777777888899999888875  23336777777777889999999999998        


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                           |    .+|.+.|+++.|+..++.+...
T Consensus       266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  266 SEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence                 7    9999999999999999888643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.17  E-value=0.022  Score=34.44  Aligned_cols=62  Identities=18%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      +......+...+.+.|++++|.+.|             |    ..+...|+.+.|...++...+..|+++..+..+..+
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            3444567778889999999999999             2    677788999999999999988888887766655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.09  E-value=0.023  Score=40.40  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------H---HHHHhhCChhH
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------W---SACKIHGAVKL   85 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------~---~~~~~~g~~~~   85 (112)
                      +...|+|..+|-.|.+  +=+.+..+.-+|=+.|-+.|++|.|.++-                  +   ..|-..|-+|+
T Consensus        48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            3678999999999986  22234455557888999999999999997                  1   88899999999


Q ss_pred             HHHHHHHHHh
Q 033770           86 SHEVGKRLLE   95 (112)
Q Consensus        86 a~~~~~~m~~   95 (112)
                      |+.+|.....
T Consensus       126 AE~~f~~L~d  135 (389)
T COG2956         126 AEDIFNQLVD  135 (389)
T ss_pred             HHHHHHHHhc
Confidence            9999998875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.09  E-value=0.066  Score=37.39  Aligned_cols=71  Identities=15%  Similarity=0.103  Sum_probs=40.6

Q ss_pred             cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCCh-hHHHHHH
Q 033770           29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAV-KLSHEVG   90 (112)
Q Consensus        29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~-~~a~~~~   90 (112)
                      .+.+|..+|+++..  .+.+++.+.|.+.-++...|++++|.+++             .    ......|+. +.+.+.+
T Consensus       182 ~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            46677777777653  45566667777777777777777777776             1    222333444 4556666


Q ss_pred             HHHHhcCCCCC
Q 033770           91 KRLLELQPEHC  101 (112)
Q Consensus        91 ~~m~~~~~~~~  101 (112)
                      .+++...|.++
T Consensus       260 ~qL~~~~p~h~  270 (290)
T PF04733_consen  260 SQLKQSNPNHP  270 (290)
T ss_dssp             HHCHHHTTTSH
T ss_pred             HHHHHhCCCCh
Confidence            66666556543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.05  E-value=0.23  Score=34.09  Aligned_cols=95  Identities=17%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------H----
Q 033770            9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------W----   74 (112)
Q Consensus         9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------~----   74 (112)
                      ...|+......+=+++...|+-+.+..+......  .-.-|...-+..++...+.|++.+|...|          |    
T Consensus        61 ~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~  138 (257)
T COG5010          61 LRNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN  138 (257)
T ss_pred             hcCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence            3445333335555667777888877777766542  33346666677888888999999999888          3    


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                         -+|.+.|+++.|..-+.+..++.|.++....
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n  172 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIAN  172 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence               7888889999999998888888887776544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.02  E-value=0.021  Score=36.43  Aligned_cols=67  Identities=12%  Similarity=0.042  Sum_probs=36.1

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhHHH
Q 033770           26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKLSH   87 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~a~   87 (112)
                      +.|++++|..+|+-... .  -| +..-|--|=..+-..|++++|...+              +   .++-..|+.+.|+
T Consensus        47 ~~G~l~~A~~~f~~L~~-~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         47 EVKEFAGAARLFQLLTI-Y--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HCCCHHHHHHHHHHHHH-h--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            55666666666665543 2  23 2333334444455556666666665              1   5555556666666


Q ss_pred             HHHHHHHh
Q 033770           88 EVGKRLLE   95 (112)
Q Consensus        88 ~~~~~m~~   95 (112)
                      +.|+....
T Consensus       124 ~aF~~Ai~  131 (157)
T PRK15363        124 KALKAVVR  131 (157)
T ss_pred             HHHHHHHH
Confidence            66665554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.01  E-value=0.052  Score=41.88  Aligned_cols=96  Identities=18%  Similarity=0.309  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      -..+|+.+=+.+-..|++++|+.+++.+.+   +.| .+..|.-+-.++...|+.+.|...|                  
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg  191 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence            456788888888888888889888888875   233 5667777777788888877777776                  


Q ss_pred             -----------------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           74 -----------------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        74 -----------------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                                                   |    ..+...|+...|..-|++.++++|.-+..|.-|-+.|
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~  262 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY  262 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH
Confidence                                         4    5566667777788777777777777666665554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=95.96  E-value=0.075  Score=39.95  Aligned_cols=94  Identities=14%  Similarity=0.066  Sum_probs=70.7

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccC--CCcC----HHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFE--VVPI----MEHYGCVVDLLGRAGLLSEANEFL-----------------   73 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~~A~~~f-----------------   73 (112)
                      ++.+...|+..+.++.|..++....+-.-  +.++    ..+++-|=..|-+.|++++|.+++                 
T Consensus       328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~  407 (508)
T KOG1840|consen  328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG  407 (508)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence            45677778888999999888876553111  2233    367889999999999999999999                 


Q ss_pred             -----H---HHHHhhCChhHHHHHHHHHH----hcCCCCCcchhhhhcc
Q 033770           74 -----W---SACKIHGAVKLSHEVGKRLL----ELQPEHCRRYVVLSNV  110 (112)
Q Consensus        74 -----~---~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~l~~~  110 (112)
                           |   ..|.+.+....|.++|.+..    ..+|+.|+....+.|+
T Consensus       408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL  456 (508)
T KOG1840|consen  408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL  456 (508)
T ss_pred             hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence                 4   78888889999999998876    3677777755544443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=0.015  Score=44.34  Aligned_cols=87  Identities=9%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      ...||.++=+.|+-.++.+.|+..|++..+   +.| ..++|+.+=+=+....++|+|++-|             |    
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            457888888888999999999999988764   445 5677777777777778888888888             4    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ..|.+.++.+.|+--|++..+.+|.+..
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsv  524 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSV  524 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchh
Confidence            5666677777777777777766665544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.81  E-value=0.098  Score=40.47  Aligned_cols=92  Identities=16%  Similarity=0.248  Sum_probs=62.1

Q ss_pred             CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------H----
Q 033770           10 LRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------W----   74 (112)
Q Consensus        10 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------~----   74 (112)
                      ++|+ ...||.|-.|.-..|++.+|.+.+.+..+ +  .| -...-+-|-..|.+-|.+++|.++|         +    
T Consensus       315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~  391 (966)
T KOG4626|consen  315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-L--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH  391 (966)
T ss_pred             cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh
Confidence            3443 34677777777777777777777776653 2  22 3345566667777777777777776         1    


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                          ..|.+.|+.++|...+++..+.+|+-...+
T Consensus       392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~  425 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL  425 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence                666777888888888888888777644333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.76  E-value=0.079  Score=28.42  Aligned_cols=59  Identities=19%  Similarity=0.066  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +...+..+-..+...+++++|...++.... . ...+..++..+...+...|+.++|.+.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~   91 (100)
T cd00189          33 NADAYYNLAAAYYKLGKYEEALEDYEKALE-L-DPDNAKAYYNLGLAYYKLGKYEEALEAY   91 (100)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHHHHHHhHHHHHHHH
Confidence            446777788888899999999999998774 2 2335568888999999999999998875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.71  E-value=0.019  Score=32.16  Aligned_cols=58  Identities=17%  Similarity=0.061  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +...+-.+-.++.+.|++++|..+++....  +.. +....-.+-.+|.+.|++++|.+.|
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~~~-~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQKLKL--DPS-NPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--HHC-HHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            455555688999999999999999988322  221 2233445577899999999999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.66  E-value=0.085  Score=32.52  Aligned_cols=54  Identities=24%  Similarity=0.209  Sum_probs=38.2

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ...++..+...|+.++|.++......   ..| |-..|-.+|.+|.+.|+..+|.+.|
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y  119 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVY  119 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            34455666678888888888888774   223 6778888888888888888888886

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.63  E-value=0.058  Score=29.54  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhc---cC-CCcC-HHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGE---FE-VVPI-MEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+|+.+=..+...|++++|+..+++...-   .| -.|+ ..+++-|-..|.+.|++++|++.+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~   69 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY   69 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46778888889999999999999887741   11 1122 445555666666666666666654

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.12  Score=37.56  Aligned_cols=79  Identities=16%  Similarity=0.081  Sum_probs=63.3

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH-HHHHHHHhcCChhHHHHHH---------H-------HHHHhhCC
Q 033770           20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYG-CVVDLLGRAGLLSEANEFL---------W-------SACKIHGA   82 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~f---------~-------~~~~~~g~   82 (112)
                      +-.|.+..|...+|+++|-++.. ..++ |.++|. .|-+.|.++|.++.|.+++         +       ..|-+.+.
T Consensus       399 ~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~e  476 (557)
T KOG3785|consen  399 LAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANE  476 (557)
T ss_pred             HHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            44566677889999999988764 3443 667775 5667899999999999999         1       77778899


Q ss_pred             hhHHHHHHHHHHhcCCCC
Q 033770           83 VKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        83 ~~~a~~~~~~m~~~~~~~  100 (112)
                      +--|-+.|+++..++|+.
T Consensus       477 FyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  477 FYYAAKAFDELEILDPTP  494 (557)
T ss_pred             HHHHHHhhhHHHccCCCc
Confidence            999999999999888753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.51  E-value=0.2  Score=36.32  Aligned_cols=87  Identities=5%  Similarity=-0.029  Sum_probs=47.2

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------H-------HHHHhhCC
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------W-------SACKIHGA   82 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------~-------~~~~~~g~   82 (112)
                      |..++..-....+.+...++++...+  ..+.++....++..++.+.|+.++|.+++       |       .+....++
T Consensus       232 ~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~  309 (398)
T PRK10747        232 WIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNN  309 (398)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCC
Confidence            44444444444455555555555543  22335556666666666666666666666       1       22223456


Q ss_pred             hhHHHHHHHHHHhcCCCCCcchh
Q 033770           83 VKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        83 ~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      .+++.+..+...+..|+++....
T Consensus       310 ~~~al~~~e~~lk~~P~~~~l~l  332 (398)
T PRK10747        310 PEQLEKVLRQQIKQHGDTPLLWS  332 (398)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHH
Confidence            66666666666666666655443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.44  E-value=0.17  Score=40.10  Aligned_cols=66  Identities=23%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             CCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           46 VVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        46 ~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      +.-++..|--+.++|-+.|++.+|.++|              |    ++|...|..++|.+.++.+....|++...-+.|
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L  489 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITL  489 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence            3337777888999999999999999999              5    888888999999999999999999888877777


Q ss_pred             hccc
Q 033770          108 SNVH  111 (112)
Q Consensus       108 ~~~y  111 (112)
                      +.+|
T Consensus       490 asl~  493 (895)
T KOG2076|consen  490 ASLY  493 (895)
T ss_pred             HHHH
Confidence            6654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.43  E-value=0.18  Score=40.01  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=56.3

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      .+++ |++++|.+++.+.++  .-+-....|-+|=..|-..|+.+++...+             |    .-..+.|++++
T Consensus       149 lfar-g~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  149 LFAR-GDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHh-CCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            3444 999999999999885  34447788999999999999999998887             4    44455666777


Q ss_pred             HHHHHHHHHhcCCCC
Q 033770           86 SHEVGKRLLELQPEH  100 (112)
Q Consensus        86 a~~~~~~m~~~~~~~  100 (112)
                      |.-.|.+..+..|++
T Consensus       226 A~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  226 ARYCYSRAIQANPSN  240 (895)
T ss_pred             HHHHHHHHHhcCCcc
Confidence            777777776666655

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.39  E-value=0.36  Score=33.45  Aligned_cols=84  Identities=8%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      +.+|..+++..-+.+.++.|..+|.+..+...+..++....++|.-+ ..++.+.|.++|             |    .-
T Consensus         1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            35789999999999999999999999986444566777767777544 346666699998             4    66


Q ss_pred             HHhhCChhHHHHHHHHHHhcCC
Q 033770           77 CKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                      ....++.+.|..+|+.....-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~  101 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLP  101 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSS
T ss_pred             HHHhCcHHHHHHHHHHHHHhcC
Confidence            6778999999999999875433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.36  E-value=0.39  Score=32.67  Aligned_cols=88  Identities=18%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------H---
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------W---   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------~---   74 (112)
                      .-+|..+=..|.+.|..+.|.+-|++..+   +.| +-..-|=-=.-+|..|++++|...|               |   
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~  145 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL  145 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence            34566666667777777777777776553   233 2222222222357777777777777               3   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                       -+..+.|+++.|+..++.-.+.+|+.+...
T Consensus       146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         146 GLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             HHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence             233456888888888888888777765543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.29  E-value=0.3  Score=31.19  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      +....-++=..+...|++++|.++|             |    .+|-..|++.+|...+.....++|++|.++.-
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            3444445556678999999999999             4    66777899999999999999999998876543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.28  E-value=0.12  Score=28.24  Aligned_cols=46  Identities=15%  Similarity=0.199  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHH--------------------H----HHHHhhCChhHHHHHHHHHHh
Q 033770           50 MEHYGCVVDLLGRAGLLSEANEFL--------------------W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        50 ~~~~~~li~~~~~~g~~~~A~~~f--------------------~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                      ..+|+.+-..|.+.|++++|++.|                    +    ..+...|+.++|++.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356788888999999999999999                    1    778888999999999988764

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.24  E-value=0.23  Score=34.71  Aligned_cols=28  Identities=18%  Similarity=0.124  Sum_probs=15.6

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .+....|++++|++++++..+.+|.++.
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence            4445566777777776666555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.042  Score=41.48  Aligned_cols=101  Identities=10%  Similarity=0.057  Sum_probs=69.2

Q ss_pred             cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccC--CCcCHHHHHHHHHHHHhcCChhHHHHHH--------
Q 033770            8 KGLRAN-EVTFVAVLTACARARLVELGLELFHSLLG---EFE--VVPIMEHYGCVVDLLGRAGLLSEANEFL--------   73 (112)
Q Consensus         8 ~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~f--------   73 (112)
                      .++-|+ ....+-+=-...+.+.+.+|..+|+.-..   +.+  ......+++-|=++|.+++.+++|...+        
T Consensus       407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            455553 33444333333457888999998887662   001  1125566777888889999999999988        


Q ss_pred             --H-------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           74 --W-------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        74 --~-------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                        |       -.|...|+++.|..-|++...+.|++...-.+|.
T Consensus       487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence              3       3456678999999999999888898866655554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.15  E-value=0.15  Score=30.29  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=22.9

Q ss_pred             HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +..+-+..+-. +.+.|++.+..+.++++-|..++.-|.++|
T Consensus        28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~l   68 (108)
T PF02284_consen   28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRIL   68 (108)
T ss_dssp             HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444444444 566677777777777777777777777766

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.95  E-value=0.35  Score=34.81  Aligned_cols=81  Identities=12%  Similarity=0.087  Sum_probs=58.4

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H-----HHHHhhC
Q 033770           19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W-----SACKIHG   81 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~-----~~~~~~g   81 (112)
                      -+=++|-+.|...+|..-++.-..   -.|-+.||-.|-+.|.+..+.+.|..+|            +     +.+-..+
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            455667777888888877766442   3466778888888888888888888888            1     5555567


Q ss_pred             ChhHHHHHHHHHHhcCCCCCc
Q 033770           82 AVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        82 ~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      +.++|.++++...+.+|.++.
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccce
Confidence            777888888877777776544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=94.93  E-value=0.21  Score=26.48  Aligned_cols=50  Identities=22%  Similarity=0.199  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhC-ChhHHHHHHHHHHhcCC
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHG-AVKLSHEVGKRLLELQP   98 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g-~~~~a~~~~~~m~~~~~   98 (112)
                      +..+|..+=..+.+.|++++|.+.|             |    .++...| +.++|.+.+++..+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4567777888899999999999999             3    7778888 79999999999988776

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.93  E-value=0.23  Score=39.80  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHHH---------------
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFLW---------------   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f~---------------   74 (112)
                      -|.+..+.|=+.+.-.|++..++.+-+.+.. .-..-  -..+|--+=++|=..|++++|.+.++               
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~-~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIK-NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            3667777888888999999999999988885 33221  22345567788889999999999981               


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT  112 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya  112 (112)
                         ..+...|+.+.+...|+.+.+..|++..+..+|-.+|+
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence               77888999999999999999989999888888887775

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.89  E-value=0.13  Score=27.63  Aligned_cols=30  Identities=13%  Similarity=0.026  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLG   42 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~   42 (112)
                      +...|...=..+.+.|++++|...+++...
T Consensus        28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen   28 DPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            555566666778899999999999999875

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.89  E-value=0.22  Score=37.23  Aligned_cols=58  Identities=21%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-CCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFE-VVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +..|...|++--+..-++.|..+|-+.++ .| +.+++.+++++|.-|+ .|+..-|.++|
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~if  455 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIF  455 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHH
Confidence            46778888888888999999999999997 68 6789999999999886 47778899998

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=94.83  E-value=0.62  Score=36.52  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770           10 LRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W   74 (112)
Q Consensus        10 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~   74 (112)
                      +.|| .-....+...+.+.+.+++|+...++...   ..| +....+.+=.++.+.|++++|.++|             |
T Consensus       115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~  191 (694)
T PRK15179        115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY  191 (694)
T ss_pred             hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence            3454 44566788889999999999999998764   345 5556678888899999999999999             2


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcC
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQ   97 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~   97 (112)
                          ..+...|+.++|...|+......
T Consensus       192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        192 VGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                77888899999999999987633

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=94.70  E-value=0.15  Score=39.73  Aligned_cols=94  Identities=18%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------------
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------------   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------------   73 (112)
                      ..|.-+|-.|...|+..+|..+..+-.+   -.||..-|..+-+..-.-.-+++|.+++                     
T Consensus       425 emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f  501 (777)
T KOG1128|consen  425 EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF  501 (777)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence            3456667777777777777766666542   2466666666666555555555555555                     


Q ss_pred             --------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           74 --------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        74 --------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                                          |    .+.-+.+++..|...|.....++|++...++-|+..|
T Consensus       502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence                                4    3334567788888888888888887776666655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.65  E-value=0.78  Score=34.76  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             CCCHHHHHH--HHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH-----------H--
Q 033770           11 RANEVTFVA--VLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL-----------W--   74 (112)
Q Consensus        11 ~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f-----------~--   74 (112)
                      .|....|+.  +=..|-..|++++|+.+.++.+.   ..|+ +.-|.+--+.|-+.|++++|.+..           |  
T Consensus       189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN  265 (517)
T PF12569_consen  189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN  265 (517)
T ss_pred             CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence            566655543  44556688999999999998775   2464 667778888899999999999888           2  


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHh
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                          ..+.++|+.++|++++....+
T Consensus       266 sK~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  266 SKCAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhcC
Confidence                455566666666666665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.64  E-value=0.59  Score=28.84  Aligned_cols=79  Identities=13%  Similarity=0.007  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------H-
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------W-   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------~-   74 (112)
                      ...|..++.+.. .++.+.+...++.+..+++-.| .....=.+-+.+...|++++|.+.|                 + 
T Consensus        12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            456788888885 7889999999999986422221 1122223457788999999999999                 1 


Q ss_pred             --HHHHhhCChhHHHHHHHHH
Q 033770           75 --SACKIHGAVKLSHEVGKRL   93 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m   93 (112)
                        ..+...|++++|...++..
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~  111 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI  111 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc
Confidence              7777889999999998663

>TIGR00540 hemY_coli hemY protein

Probab=94.63  E-value=0.65  Score=33.74  Aligned_cols=27  Identities=7%  Similarity=-0.192  Sum_probs=20.7

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      ..+...|+.+.|.++.++..+..|++.
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~  297 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKLGDDR  297 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence            666777888888888888887777665

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=94.62  E-value=0.042  Score=43.61  Aligned_cols=40  Identities=18%  Similarity=0.004  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIME   51 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~   51 (112)
                      .||..+|.+++++-.-+|+++.|..+...|++ .|+..+.+
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpir~H  240 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPIRAH  240 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCcccc
Confidence            37777777777777777777777777777775 46555544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.16  Score=38.16  Aligned_cols=82  Identities=15%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H-HHHHh-------hCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W-SACKI-------HGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~-~~~~~-------~g~~~~   85 (112)
                      +-+.+|++++|..+|-..+. .. ++|.+-|+-=..+|+..|++++|.+=-         | .+|.+       .|++++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~-l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIM-LS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hhcccccHHHHHHHHHHHHc-cC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence            45678999999999988774 22 348888988899999999999887655         7 44444       478999


Q ss_pred             HHHHHHHHHhcCCCCCcchhh
Q 033770           86 SHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      |...+.+=.+.+|++...+.=
T Consensus        89 A~~ay~~GL~~d~~n~~L~~g  109 (539)
T KOG0548|consen   89 AILAYSEGLEKDPSNKQLKTG  109 (539)
T ss_pred             HHHHHHHHhhcCCchHHHHHh
Confidence            999999988888887654443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.43  E-value=0.26  Score=29.04  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=24.8

Q ss_pred             HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +..+-+..+-. +.+.|++...++-++++-|..++.-|.++|
T Consensus        25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~l   65 (103)
T cd00923          25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRIL   65 (103)
T ss_pred             HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444444444 556666666666666666666666666665

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.36  E-value=0.26  Score=40.25  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      -|...|.-+|+..++.|.+++-.+.+.+.++ ..-.|.+.  +.||-+|++.+++.+-++++
T Consensus      1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence            3677899999999999999999998877665 55666554  57999999999999999888

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.35  E-value=0.75  Score=34.62  Aligned_cols=92  Identities=10%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             cCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccC-CCcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770            8 KGLRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFE-VVPIMEHYGCVVDLLGRAGLLSEANEFL------------   73 (112)
Q Consensus         8 ~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~f------------   73 (112)
                      ..+-| |....+-|-.-|-+.|+-..|.+.+-.-   +- ++-++.+..=|-.-|....-+++|..+|            
T Consensus       585 ~slip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k  661 (840)
T KOG2003|consen  585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK  661 (840)
T ss_pred             cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence            33333 4445555556666666666666655432   22 2224444444444455555556666666            


Q ss_pred             H-----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 W-----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 ~-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      |     +++.+.|+..+|..+++++-+.-|.+..
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedld  695 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD  695 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence            5     5556666666666666666554454433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.34  E-value=0.23  Score=37.27  Aligned_cols=92  Identities=13%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------------   73 (112)
                      +...|--+=.+.-+.+.+++++..|+..++  .++-.+..||..-..+...+++++|.+.+                   
T Consensus       427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p  504 (606)
T KOG0547|consen  427 NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP  504 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence            445555555555577888999999999875  67667888888888888999999999988                   


Q ss_pred             H-----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770           74 W-----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        74 ~-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      +     -.+-..+++..|..++++..+++|...-.|..
T Consensus       505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~t  542 (606)
T KOG0547|consen  505 LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYET  542 (606)
T ss_pred             hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence            0     11112367777777777777777754444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.28  E-value=0.36  Score=27.96  Aligned_cols=50  Identities=18%  Similarity=0.171  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           52 HYGCVVDLLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        52 ~~~~li~~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      ++-.+...+.+.|++++|.+.|                  +  ..+.+.|+++.|...++.+....|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            4556677788889999998888                  1  777888999999999999998777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.16  E-value=0.46  Score=33.30  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCChhHHHHHH-----------H------HHHHhhCChhHHHHHHHHHHhcCC
Q 033770           55 CVVDLLGRAGLLSEANEFL-----------W------SACKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        55 ~li~~~~~~g~~~~A~~~f-----------~------~~~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                      .+-..+...|++++|.+.+           |      ..+...|++++|...+++.....|
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            4444556666666666666           1      555566666666666666655444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=94.08  E-value=0.39  Score=34.90  Aligned_cols=65  Identities=17%  Similarity=0.030  Sum_probs=37.1

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCH---HHHHHHHHHHHhcCChhHHHHHH--------------H----HHHHhhCChhH
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIM---EHYGCVVDLLGRAGLLSEANEFL--------------W----SACKIHGAVKL   85 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~f--------------~----~~~~~~g~~~~   85 (112)
                      .++.+.+...+++..+.   .|+.   ....++=..+.+.|++++|.+.|              +    ..+.+.|+.++
T Consensus       312 ~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       312 PEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE  388 (409)
T ss_pred             CCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence            45556666666555431   2332   23345556666667777666666              1    55556666666


Q ss_pred             HHHHHHHHH
Q 033770           86 SHEVGKRLL   94 (112)
Q Consensus        86 a~~~~~~m~   94 (112)
                      |.+++++-.
T Consensus       389 A~~~~~~~l  397 (409)
T TIGR00540       389 AAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHH
Confidence            666666653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.98  E-value=0.81  Score=27.81  Aligned_cols=50  Identities=18%  Similarity=0.096  Sum_probs=29.7

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ++-..|+.++|..++++-.. .|....  ...+--+-+.|-..|++++|..+|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L   61 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALL   61 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34456777777777777765 565443  222333445566667777777776

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.92  E-value=0.73  Score=32.72  Aligned_cols=73  Identities=14%  Similarity=-0.002  Sum_probs=56.6

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----H----HHHHhhCC
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----W----SACKIHGA   82 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----~----~~~~~~g~   82 (112)
                      -||..-|-..|.++++.+++++-..+... +      -.++.|--.+..+.+.|+..+|.+++    .    ..|.+.|+
T Consensus       205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~  277 (319)
T PF04840_consen  205 VPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPIGYEPFVEACLKYGNKKEASKYIPKIPDEERVEMYLKCGD  277 (319)
T ss_pred             CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCCChHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHCCC
Confidence            48888888999999999999877765432 1      24588889999999999999999988    1    66677777


Q ss_pred             hhHHHHHH
Q 033770           83 VKLSHEVG   90 (112)
Q Consensus        83 ~~~a~~~~   90 (112)
                      +.+|.+..
T Consensus       278 ~~~A~~~A  285 (319)
T PF04840_consen  278 YKEAAQEA  285 (319)
T ss_pred             HHHHHHHH
Confidence            77776553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.91  E-value=0.47  Score=35.23  Aligned_cols=60  Identities=15%  Similarity=-0.023  Sum_probs=51.5

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCH----HHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIM----EHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +.+...++.+=.++.+.|++++|...|++...   +.|+.    ..|.-+-.+|.+.|++++|.+.+
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L  135 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCL  135 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34677899999999999999999999999764   45764    35888999999999999999998

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.87  E-value=0.15  Score=31.45  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccCCCcCHHHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLG----EFEVVPIMEHYG   54 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g~~p~~~~~~   54 (112)
                      +-|...|-.+|.++...|+...|.++++++.+    +.|+.|+..+-.
T Consensus        93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            44788999999999999999999999998863    579999876643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.86  E-value=1.4  Score=30.12  Aligned_cols=76  Identities=11%  Similarity=-0.038  Sum_probs=62.6

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------H-HHHH
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------W-SACK   78 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------~-~~~~   78 (112)
                      ..-|=-+|.+.|+...|..-+++..+   .-| +.-+|..+-..|-+.|+.+.|.+-|                | .=+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            33455578899999999999999875   224 6678889999999999999999999                3 4568


Q ss_pred             hhCChhHHHHHHHHHHh
Q 033770           79 IHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~   95 (112)
                      ..|.+++|..-|+....
T Consensus       115 ~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         115 AQGRPEEAMQQFERALA  131 (250)
T ss_pred             hCCChHHHHHHHHHHHh
Confidence            88999999999998875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=93.84  E-value=1.5  Score=33.27  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=42.7

Q ss_pred             CCcCHHHH--HHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           46 VVPIMEHY--GCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        46 ~~p~~~~~--~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      -.|+...|  .-+-..|-+.|++++|.+++             |    +.+...|++..|.+..++.+++++.|-
T Consensus       188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR  262 (517)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence            34666555  44566678889999999988             2    888888999999999888888776553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=93.72  E-value=0.99  Score=34.14  Aligned_cols=82  Identities=9%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCC--Cc-CHHHHHHHHHHHHhcCChhHHHHHH-----H--------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEV--VP-IMEHYGCVVDLLGRAGLLSEANEFL-----W--------   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~--~p-~~~~~~~li~~~~~~g~~~~A~~~f-----~--------   74 (112)
                      ..+++.|=..+-+.|++++|..+|+.....   .+.  .+ .-...|-|=..|.+.++.++|.++|     |        
T Consensus       367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~  446 (508)
T KOG1840|consen  367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH  446 (508)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence            367888999999999999999999988742   222  22 2456677888899999999999999     1        


Q ss_pred             -----------HHHHhhCChhHHHHHHHHHHh
Q 033770           75 -----------SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 -----------~~~~~~g~~~~a~~~~~~m~~   95 (112)
                                 ..|...|+.+.|.++.+...+
T Consensus       447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                       888999999999999998873

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=0.2  Score=35.70  Aligned_cols=45  Identities=7%  Similarity=0.065  Sum_probs=39.0

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      -+.++++.+...=++ +|+.||.++++.+|+.+.+.|++.+|..+.
T Consensus       114 y~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vv  158 (418)
T KOG4570|consen  114 YDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVV  158 (418)
T ss_pred             cChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHH
Confidence            345577777777676 999999999999999999999999999987

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.43  E-value=0.03  Score=34.47  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=53.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H------HHHHhhCChhHHHH
Q 033770           20 VLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W------SACKIHGAVKLSHE   88 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~------~~~~~~g~~~~a~~   88 (112)
                      +|+.+.+.+..+....+++.+.. .+-.-+....+.++..|++.++.++..+++     |      +.|.+.|.++.|.-
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~   91 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVY   91 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHH
Confidence            56777777777777788888775 455567788888888888888888888887     1      66666777777776


Q ss_pred             HHHHHH
Q 033770           89 VGKRLL   94 (112)
Q Consensus        89 ~~~~m~   94 (112)
                      ++..+.
T Consensus        92 Ly~~~~   97 (143)
T PF00637_consen   92 LYSKLG   97 (143)
T ss_dssp             HHHCCT
T ss_pred             HHHHcc
Confidence            666543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=93.21  E-value=2.2  Score=31.96  Aligned_cols=60  Identities=15%  Similarity=0.077  Sum_probs=36.5

Q ss_pred             CCCHHHHH-HHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFV-AVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .||...|. ....-+.+.++.++|.+.++++..   ..|+ ...+-.+=.+|.+.|++.+|.+++
T Consensus       336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L  397 (484)
T COG4783         336 QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRIL  397 (484)
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence            45444444 344556677777777777777653   2343 444455666677777777777776

>PRK15331 chaperone protein SicA; Provisional

Probab=93.21  E-value=1.1  Score=28.78  Aligned_cols=69  Identities=6%  Similarity=-0.022  Sum_probs=53.8

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhHHH
Q 033770           25 ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKLSH   87 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~a~   87 (112)
                      -+.|++++|..+|.-+.. +++. +..=|..|=..|-..|++++|...+              +   .++...|+.+.|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~-~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCI-YDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            367999999999998875 4432 3334566777777789999999998              1   7788889999999


Q ss_pred             HHHHHHHh
Q 033770           88 EVGKRLLE   95 (112)
Q Consensus        88 ~~~~~m~~   95 (112)
                      ..|+...+
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            99988775

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.19  E-value=0.68  Score=38.89  Aligned_cols=85  Identities=19%  Similarity=0.192  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H-HHH-
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W-SAC-   77 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~-~~~-   77 (112)
                      ...|..|..-|.+.+..++|-++++.|.+.+|  -....|......+.+..+-+.|.+++              + +-+ 
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            34577788888888888888888888886433  56778888888888888877777777              0 111 


Q ss_pred             ---HhhCChhHHHHHHHHHHhcCCCC
Q 033770           78 ---KIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        78 ---~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                         -++|+.+++..+|+....-.|.-
T Consensus      1608 qLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred             HHHhhcCCchhhHHHHHHHHhhCccc
Confidence               14566667666766666545543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=1.9  Score=32.44  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=51.3

Q ss_pred             CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770            9 GLRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus         9 g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      -++| |.-.|.+|=..|.+.+++++|...|.+...  +-..+...+.-|-+.|-+.++..+|...|
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3455 778889999999999999999999988874  33335678888999999999999998887

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.06  E-value=1.2  Score=34.11  Aligned_cols=57  Identities=7%  Similarity=0.017  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+|...|+.--+..-+..|..+|.+.++ .+..+ ++..++++|.-|| .++..-|.++|
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF  424 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYC-SKDKETAFRIF  424 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence            4677788888888889999999999997 57777 8999999999887 47778899999

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=93.00  E-value=0.47  Score=30.13  Aligned_cols=59  Identities=19%  Similarity=0.002  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      ....+..+-..|.+.|++++|.+.|                |    ..+.+.|+.++|...+++..+..|.++..+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3445667777888999999999988                2    677888999999999999998888776554433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=92.80  E-value=0.59  Score=29.50  Aligned_cols=60  Identities=15%  Similarity=-0.087  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      -...|..+...+...|++++|...|                |    ..+...|+.++|...++...+..|.....+..+.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            4566677777888889999999988                2    6677789999999999999988777655544443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.71  E-value=2.1  Score=34.67  Aligned_cols=88  Identities=9%  Similarity=-0.008  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLSHEVGK   91 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~~~   91 (112)
                      ..+-++=.+|-+.|+.+++..+++++.+ .. .-|...-|=+--.|+.. ++++|.++..   .-+....+...+.++|.
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~  193 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS  193 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            4455566677778999999999999996 56 33788888888899999 9999999974   55667779999999999


Q ss_pred             HHHhcCCCCCcchh
Q 033770           92 RLLELQPEHCRRYV  105 (112)
Q Consensus        92 ~m~~~~~~~~~~~~  105 (112)
                      ++....|++...+.
T Consensus       194 k~~~~~~~d~d~f~  207 (906)
T PRK14720        194 KLVHYNSDDFDFFL  207 (906)
T ss_pred             HHHhcCcccchHHH
Confidence            99998888776543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.66  E-value=1.3  Score=31.71  Aligned_cols=58  Identities=10%  Similarity=-0.016  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +...|..+-.++.+.|++++|...+++...   +.| +...|..+-.+|.+.|++++|.+.|
T Consensus        35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~eA~~~~   93 (356)
T PLN03088         35 NAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQTAKAAL   93 (356)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            566777788889999999999999999875   234 6778888888999999999999998

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=92.53  E-value=0.7  Score=31.87  Aligned_cols=55  Identities=11%  Similarity=0.095  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           50 MEHYGCVVDLLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        50 ~~~~~~li~~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      ...|...+..+.+.|++++|...|                  |  ..+-..|+.+.|...|+.+.+..|+++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~  217 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA  217 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            445677777767789999999998                  4  788889999999999999998778765433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.49  E-value=0.81  Score=33.40  Aligned_cols=83  Identities=12%  Similarity=0.017  Sum_probs=61.2

Q ss_pred             HHhccCcHHHHHHHHHHhhhc----cCCC---------cCHHHHHHHHHHHHhcCChhHHHHHH--------------H-
Q 033770           23 ACARARLVELGLELFHSLLGE----FEVV---------PIMEHYGCVVDLLGRAGLLSEANEFL--------------W-   74 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~----~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~f--------------~-   74 (112)
                      .+.+.|++..|..-+++..+-    .++.         .-...++=|...|.+.+++.+|++..              | 
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR  296 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR  296 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence            456888888888777764431    1111         12344555667788999999998876              4 


Q ss_pred             --HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                        .++...|+++.|...|+++++++|.|.....
T Consensus       297 rG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  297 RGQALLALGEYDLARDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence              8999999999999999999999998855433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.45  E-value=0.27  Score=22.08  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                      ..+-..|+.++|.+.|++..++.|++
T Consensus         9 ~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    9 QAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            56778899999999999999888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.39  E-value=0.28  Score=22.94  Aligned_cols=20  Identities=15%  Similarity=0.205  Sum_probs=9.5

Q ss_pred             HHHHHHHHHhcCChhHHHHH
Q 033770           53 YGCVVDLLGRAGLLSEANEF   72 (112)
Q Consensus        53 ~~~li~~~~~~g~~~~A~~~   72 (112)
                      |+.|=+.|.+.|++++|.++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~   21 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEY   21 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHH
Confidence            34444455555555555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.37  E-value=2  Score=27.79  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH------------H-----
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL------------W-----   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f------------~-----   74 (112)
                      ...+..+-.-|.+.|+.+.|.+.+.++.. +...|  -+..+-.+|+...-.|++..+...+            |     
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            35677888999999999999999999985 66655  3445568899999999998888887            4     


Q ss_pred             ------HHHHhhCChhHHHHHHHHHH
Q 033770           75 ------SACKIHGAVKLSHEVGKRLL   94 (112)
Q Consensus        75 ------~~~~~~g~~~~a~~~~~~m~   94 (112)
                            -.+...+++..|-+.|-+..
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccC
Confidence                  33445678888888877664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=92.36  E-value=1.9  Score=32.65  Aligned_cols=74  Identities=14%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H-------HHHHhhCChhHHHHHHHHH
Q 033770           30 VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W-------SACKIHGAVKLSHEVGKRL   93 (112)
Q Consensus        30 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~-------~~~~~~g~~~~a~~~~~~m   93 (112)
                      ++.+.+..++.........+...|.++--.....|++++|...+         |       ..+...|+.++|.+.+++.
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44455555443321123335567777755566679999999999         2       6677789999999999999


Q ss_pred             HhcCCCCCcc
Q 033770           94 LELQPEHCRR  103 (112)
Q Consensus        94 ~~~~~~~~~~  103 (112)
                      ..++|..++.
T Consensus       480 ~~L~P~~pt~  489 (517)
T PRK10153        480 FNLRPGENTL  489 (517)
T ss_pred             HhcCCCCchH
Confidence            9999987753

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.18  E-value=1.1  Score=33.68  Aligned_cols=81  Identities=12%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH---HHhcCChhHHHHHHH-----------------HHHHhhCChhH
Q 033770           26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL---LGRAGLLSEANEFLW-----------------SACKIHGAVKL   85 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~f~-----------------~~~~~~g~~~~   85 (112)
                      ..|++++|...+.+..+ .    |...-.+|..-   +-..|++++|++.|+                 ..|-...+...
T Consensus       502 ~ngd~dka~~~ykeal~-n----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq  576 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALN-N----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ  576 (840)
T ss_pred             ecCcHHHHHHHHHHHHc-C----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence            45889999999888765 2    33332333332   567799999999991                 66677788999


Q ss_pred             HHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           86 SHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      |.+++-+...+.|++|....-|..+|
T Consensus       577 aie~~~q~~slip~dp~ilskl~dly  602 (840)
T KOG2003|consen  577 AIELLMQANSLIPNDPAILSKLADLY  602 (840)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHh
Confidence            99999888888999988777666655

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.06  E-value=1.3  Score=32.98  Aligned_cols=90  Identities=20%  Similarity=0.097  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCCcCHHHHHHHH-HHHHhcCChhHHHHHH----------------
Q 033770           15 VTFVAVLTACAR----ARLVELGLELFHSLLGEFEVVPIMEHYGCVV-DLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        15 ~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~f----------------   73 (112)
                      .+|..++..++.    ..+++.|.++++.+...   -|+...|...- +.+...|++++|.+.|                
T Consensus       230 L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l  306 (468)
T PF10300_consen  230 LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL  306 (468)
T ss_pred             HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence            345555555554    45688999999998753   37877775443 3356679999999999                


Q ss_pred             --H---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 --W---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 --~---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                        |   -.+....++++|.+.|..+.+...-...+|..+
T Consensus       307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~  345 (468)
T PF10300_consen  307 CYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence              3   456677899999999999987444444555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.02  E-value=0.73  Score=35.06  Aligned_cols=69  Identities=17%  Similarity=0.116  Sum_probs=37.8

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---HHHHhhCChhH
Q 033770           24 CARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W---SACKIHGAVKL   85 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~---~~~~~~g~~~~   85 (112)
                      |--.|.+++|...|+...+   +.| |-..||-|=..++...+-.+|..-+              |   -+|...|.+++
T Consensus       440 y~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE  516 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE  516 (579)
T ss_pred             HhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence            4445556666666655442   344 5555565555566666655655555              1   45555566666


Q ss_pred             HHHHHHHHHh
Q 033770           86 SHEVGKRLLE   95 (112)
Q Consensus        86 a~~~~~~m~~   95 (112)
                      |.+-|-+...
T Consensus       517 A~~hlL~AL~  526 (579)
T KOG1125|consen  517 AVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHH
Confidence            6655555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.99  E-value=1.9  Score=31.55  Aligned_cols=92  Identities=17%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------   73 (112)
                      ..+|..++.-....+..+.-...++...+  ..+-++..-.+++.-+.++|+.++|.+++                    
T Consensus       229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~  306 (400)
T COG3071         229 QQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLR  306 (400)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcC
Confidence            35788888888888888888888888875  45566777788888999999999999998                    


Q ss_pred             -------------H---------------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           74 -------------W---------------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        74 -------------~---------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                                   |               .-|-+++.+.+|.+.|+...+..|+ .+.+..+.
T Consensus       307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la  368 (400)
T COG3071         307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELA  368 (400)
T ss_pred             CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHH
Confidence                         2               5566777777777777766655553 33444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.94  E-value=0.56  Score=29.47  Aligned_cols=61  Identities=10%  Similarity=-0.031  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |....|+.-..++ +.|++++|...|+.+...+-..| ..-..--|+.+|-+.|++++|...+
T Consensus         9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~   70 (142)
T PF13512_consen    9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAY   70 (142)
T ss_pred             CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            4445555555544 44888888888888875444443 2222335566666666666665555

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.89  E-value=3.2  Score=29.07  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHH----hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTAC----ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~----~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +..|.+-|-.++    .-.+.+.+|.-+|++|..  +..|+..+-|-..-.+...|++++|..++
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL  230 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLL  230 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence            445555444443    344557888888888873  57778888887777888888888888887

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=91.67  E-value=1.3  Score=29.30  Aligned_cols=54  Identities=19%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ....+-.+...+.+.|++++|...|                |    ..+-..|+++.|...++++.+..|+++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            5566777788899999999999998                1    6777889999999999999998887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=91.62  E-value=0.33  Score=39.00  Aligned_cols=88  Identities=11%  Similarity=0.053  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------------H-
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------------W-   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------------~-   74 (112)
                      |.+.=|-+=-.++..|++++|..||.+.+. ... -+..+|-=|-+.|..+|++..|.++|                 + 
T Consensus       645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrE-a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L  722 (1018)
T KOG2002|consen  645 NMYAANGIGIVLAEKGRFSEARDIFSQVRE-ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL  722 (1018)
T ss_pred             hhhhccchhhhhhhccCchHHHHHHHHHHH-HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            334444444455678889999999999885 232 23455666778889999999999998                 1 


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                       +++-+.|.+.+|.+.......+.|.++.
T Consensus       723 ara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  723 ARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence             6777778888888888887777787665

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=91.57  E-value=2  Score=34.84  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH-----H-----H---
Q 033770            9 GLRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF-----L-----W---   74 (112)
Q Consensus         9 g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-----f-----~---   74 (112)
                      ++.| +...+..||..+-..+++++|.++.+.-.....-.+...-+..+  .|.+.++.+++.-+     |     |   
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHH
Confidence            3444 56678889999999999999999998655322222233333333  55555555554433     2     1   


Q ss_pred             ---------------------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 ---------------------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ---------------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                                           .+|.+.|+.++|..+++++.+.+|.++...+-++
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A  157 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA  157 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence                                 6777889999999999999999998876544433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.55  E-value=0.46  Score=22.17  Aligned_cols=26  Identities=12%  Similarity=0.098  Sum_probs=21.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770           16 TFVAVLTACARARLVELGLELFHSLL   41 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~   41 (112)
                      +|+.|=..|.+.|++++|..++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47788899999999999999999843

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=91.50  E-value=2.2  Score=27.98  Aligned_cols=87  Identities=16%  Similarity=0.127  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------H--
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------W--   74 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------~--   74 (112)
                      ..|..-... .+.|++++|...|+.+...+...| -....-.+..+|-+.|++++|...|                 |  
T Consensus         7 ~lY~~a~~~-~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    7 ALYQKALEA-LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHH-HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            344444443 456999999999999986433333 2333446788899999999999998                 1  


Q ss_pred             --HH----------HHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 --SA----------CKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 --~~----------~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                        ..          ....+....|...|+.+.+.-|+.+.
T Consensus        86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence              11          11223345677777777776776543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.37  E-value=2.3  Score=34.18  Aligned_cols=86  Identities=19%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             HHHHHHHHHh--ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H-HHH
Q 033770           16 TFVAVLTACA--RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W-SAC   77 (112)
Q Consensus        16 t~~~li~~~~--~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~-~~~   77 (112)
                      .|.-+++|++  +.|..++|..+++.... .+.. |..|-.++-..|-+.|+.|+|..++               | -+|
T Consensus        43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay  120 (932)
T KOG2053|consen   43 LYAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY  120 (932)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence            4555666665  77899999999988765 4554 8899999999999999999999997               3 677


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      .+.++..+-.++.=++.+..|.++.+
T Consensus       121 vR~~~yk~qQkaa~~LyK~~pk~~yy  146 (932)
T KOG2053|consen  121 VREKSYKKQQKAALQLYKNFPKRAYY  146 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccch
Confidence            77777776666666666677776653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.27  E-value=3.7  Score=28.93  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH-----HHHhcCChhHHHHHH------------
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD-----LLGRAGLLSEANEFL------------   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~-----~~~~~g~~~~A~~~f------------   73 (112)
                      +.+...-..|.+.-.+.||.+.|...|++..++ .-..|-.+.+.++.     .|.-..++-+|.+.|            
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            446666667777778999999999999987753 33345555554443     244455566666665            


Q ss_pred             H---HHHHh--hCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           74 W---SACKI--HGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        74 ~---~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      +   .+.|.  .|+..+|.+..+.|++..|....+-.++.|+
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL  329 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL  329 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence            1   44333  4889999999999998777654444444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=91.18  E-value=2.4  Score=33.02  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=43.9

Q ss_pred             CCCHHHHHH--HHHHHhccCcHHHHHHHHHHhhhccCCCcCH-HHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFVA--VLTACARARLVELGLELFHSLLGEFEVVPIM-EHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +|.+..|+.  +...+=+.|+++.|....+..+   +-.|+. .-|.+=-+.+.+.|++++|..++
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l  428 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWL  428 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            677777764  7777888999999999988866   334543 23334447788899999999888

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.00  E-value=3.4  Score=31.74  Aligned_cols=81  Identities=15%  Similarity=0.040  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKR   92 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~   92 (112)
                      ...+++.|=++|.+.+..++|...+++-..  -.+-|..+|.++=-.|...|+++.|.+.|-.++...-+=..+.++++.
T Consensus       454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             hhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            556788999999999999999999999874  455588999999888999999999999973444444444445555555


Q ss_pred             HHh
Q 033770           93 LLE   95 (112)
Q Consensus        93 m~~   95 (112)
                      +.+
T Consensus       532 aie  534 (611)
T KOG1173|consen  532 AIE  534 (611)
T ss_pred             HHH
Confidence            543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=90.88  E-value=2.8  Score=33.05  Aligned_cols=59  Identities=15%  Similarity=0.062  Sum_probs=29.2

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ....|--..+-+-.+|++..|..++...-. ..-. +..+|=+-++.-.+..+++.|.++|
T Consensus       583 ae~lwlM~ake~w~agdv~~ar~il~~af~-~~pn-seeiwlaavKle~en~e~eraR~ll  641 (913)
T KOG0495|consen  583 AEILWLMYAKEKWKAGDVPAARVILDQAFE-ANPN-SEEIWLAAVKLEFENDELERARDLL  641 (913)
T ss_pred             chhHHHHHHHHHHhcCCcHHHHHHHHHHHH-hCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence            333444444444455555555555555442 1111 4445555555555555555555555

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=90.60  E-value=2.6  Score=25.66  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ...+|..+.+.+.......+++.+.. .+ ..+...+|.+|..|++..+ .+..+.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~~-~~ll~~l   63 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYDP-QKEIERL   63 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHCH-HHHHHHH
Confidence            34667777777888888888888875 45 3577788888888887643 3334444

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.45  E-value=3.1  Score=29.60  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------H----HHHHhhC
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------W----SACKIHG   81 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------~----~~~~~~g   81 (112)
                      ..+.+.-|.-+...|....|.++-.    ++++ ||---|-.-|++|++.|+|++-.++.        |    ..|.+.|
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYG  251 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCC
Confidence            3455666777778888877766643    3555 89999999999999999999988766        3    8999999


Q ss_pred             ChhHHHHHHHHH
Q 033770           82 AVKLSHEVGKRL   93 (112)
Q Consensus        82 ~~~~a~~~~~~m   93 (112)
                      +..+|......+
T Consensus       252 ~~~eA~~yI~k~  263 (319)
T PF04840_consen  252 NKKEASKYIPKI  263 (319)
T ss_pred             CHHHHHHHHHhC
Confidence            999988777663

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.20  E-value=1.7  Score=34.76  Aligned_cols=51  Identities=16%  Similarity=0.160  Sum_probs=20.7

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770           19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF   72 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~   72 (112)
                      -.|..|.+.|.+++|.++-++.   .|-...+..|-+=-.-.-+.|++.+|+++
T Consensus       796 dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeql  846 (1636)
T KOG3616|consen  796 DAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQL  846 (1636)
T ss_pred             HHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence            3444444444444444443332   12223333333333333444444444444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.00  E-value=2.8  Score=26.47  Aligned_cols=73  Identities=22%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------------H----HHHHhhC
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------------W----SACKIHG   81 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------------~----~~~~~~g   81 (112)
                      +.+..|++++|++.|.+-..  -.+-....||-=-.++--.|+.++|.+=+                 |    .-|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            45788999999999999764  23347888999999999999999988777                 1    3445567


Q ss_pred             ChhHHHHHHHHHHhcC
Q 033770           82 AVKLSHEVGKRLLELQ   97 (112)
Q Consensus        82 ~~~~a~~~~~~m~~~~   97 (112)
                      +.+.|..=|...-+++
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            8888887777665544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=89.91  E-value=5  Score=31.72  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      -+...|-.-++--+....+|.|..+|.+...   ..|+.-.|.-=++.---.++.++|.+++             |    
T Consensus       616 nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG  692 (913)
T KOG0495|consen  616 NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG  692 (913)
T ss_pred             CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence            3566777888888888999999999998764   4455555554444444467888888887             4    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ..+-+.++.+.|.+.+..=.+..|..+-.+.+|+.+
T Consensus       693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl  728 (913)
T KOG0495|consen  693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL  728 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence            666777788888887776666777777777777653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=89.80  E-value=2.5  Score=34.70  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------------   73 (112)
                      .|+.|=.-|+..-+...|.+.|+...   .+-| |...+-++.+-|++..+++.|..+.                     
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAF---eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAF---ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            34444444555556666777776654   2333 6777788888899999998888887                     


Q ss_pred             ----------------------------H----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           74 ----------------------------W----SACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        74 ----------------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                                                  |    .+|.+.|+...|.++|.+...+.|.+
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence                                        4    78888888888888888887777754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=89.78  E-value=3.9  Score=28.21  Aligned_cols=21  Identities=10%  Similarity=0.041  Sum_probs=17.3

Q ss_pred             HHHHhhCChhHHHHHHHHHHh
Q 033770           75 SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~   95 (112)
                      ..+.+.|+.++|.++|+++..
T Consensus       163 ~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  163 DLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHH
Confidence            677888999999999998875

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=89.72  E-value=3.2  Score=30.40  Aligned_cols=69  Identities=19%  Similarity=0.070  Sum_probs=38.4

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H--HHHHhhCChhHHH
Q 033770           24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W--SACKIHGAVKLSH   87 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~--~~~~~~g~~~~a~   87 (112)
                      +.+.++.+.=.+..+.-....+-.|  ..+.+|=..|.+.+.+.+|.+.|              |  +++.+.|+..+|.
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence            3444444444444443332233333  44555666666666666666666              2  6666667777777


Q ss_pred             HHHHHHH
Q 033770           88 EVGKRLL   94 (112)
Q Consensus        88 ~~~~~m~   94 (112)
                      .+.++-.
T Consensus       382 ~~r~e~L  388 (400)
T COG3071         382 QVRREAL  388 (400)
T ss_pred             HHHHHHH
Confidence            6666655

>PRK15331 chaperone protein SicA; Provisional

Probab=89.68  E-value=1.1  Score=28.86  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             HHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           58 DLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        58 ~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      --+-..|++++|..+|             |    .+|-..++.+.|...+...-.+++++|.++
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            3456789999999999             3    556667899999999998887777776643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.58  E-value=0.49  Score=21.37  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=19.3

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      ..+...|+.++|...|++..+++|+
T Consensus         9 ~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    9 NAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4667788888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=89.44  E-value=3.3  Score=31.43  Aligned_cols=58  Identities=5%  Similarity=-0.065  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +...|.++=-.....|++++|...+++... .  .|+...|..+-+.+...|+.++|.+.+
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L--~ps~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAID-L--EMSWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445566554444457999999999999875 3  478999999999999999999999998

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.17  E-value=1.2  Score=35.62  Aligned_cols=68  Identities=13%  Similarity=0.201  Sum_probs=33.7

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H----HHHHhhCChhHHHHHHHH
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W----SACKIHGAVKLSHEVGKR   92 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~----~~~~~~g~~~~a~~~~~~   92 (112)
                      .+-..+..+.+|..+.+.+.. ...  -..-|..+-+-|+..|+++.|+++|     +    ..|.+.|++++|.++..+
T Consensus       740 eaai~akew~kai~ildniqd-qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e  816 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQD-QKT--ASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE  816 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhh-hcc--ccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence            334445555666666555442 222  1222445555556666666666655     1    445555555555554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=89.14  E-value=3.5  Score=25.02  Aligned_cols=69  Identities=19%  Similarity=0.157  Sum_probs=46.6

Q ss_pred             hHHHhhcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH
Q 033770            2 VDEMYEKGLRAN--EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus         2 ~~~M~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |++-.+.|+..+  .-.+-.+=+.+...|++++|..+++....+  + |+    ......+-.++...|+.++|.+.+
T Consensus        24 Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~-p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   24 YRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--F-PDDELNAALRVFLALALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--C-CCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            344445565544  334556777888999999999999998753  2 43    122222334678889999999987

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.89  E-value=0.69  Score=20.47  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=20.8

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      .++.+.|+.++|.+.|+++.+.-|+
T Consensus         8 ~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    8 RCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4667789999999999999887775

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.70  E-value=5.5  Score=30.84  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHH--------HhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H--------
Q 033770           16 TFVAVLTACARARLVELGLELFH--------SLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W--------   74 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~--------~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~--------   74 (112)
                      .--..+.-....|+++.|.++..        .... .+-.|-  +-.+++..|.+.++-+.|..++     |        
T Consensus       378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s  454 (652)
T KOG2376|consen  378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS  454 (652)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence            34455666678899999999999        6654 555554  4567888899999988888888     2        


Q ss_pred             -----------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 -----------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 -----------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                                 .-=-++|+-++|..+++++.+..|++....+-+
T Consensus       455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l  498 (652)
T KOG2376|consen  455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL  498 (652)
T ss_pred             hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence                       222456999999999999999888765544433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.67  E-value=6.4  Score=29.91  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           25 ARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      -+.|+.++|.+.|.+|.++....-......-||.++...+++.++..++
T Consensus       270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            4779999999999999864332224456678999999999999999999

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.57  E-value=0.54  Score=21.79  Aligned_cols=22  Identities=27%  Similarity=0.237  Sum_probs=18.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHH
Q 033770           49 IMEHYGCVVDLLGRAGLLSEAN   70 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~   70 (112)
                      |...|+-+=..|.+.|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            7788888888888888888886

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.49  E-value=5.1  Score=29.13  Aligned_cols=91  Identities=12%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHH-HHHHHHHHhcCChhHHHHHH---------------H
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHY-GCVVDLLGRAGLLSEANEFL---------------W   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~f---------------~   74 (112)
                      .|-.-||.-|-++|.+....+.|+.++.+-.   ...|-.+|| .-+-+.+-..++.++|.+++               .
T Consensus       253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gl---d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAc  329 (478)
T KOG1129|consen  253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGL---DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIAC  329 (478)
T ss_pred             CCchhHHHHHHHHHHHhccHHHHHHHHhhhh---hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeee
Confidence            5667788889999999999999999998765   234544555 56778888899999999998               0


Q ss_pred             --HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                        .+|--.++++.|.+.++.+.+++..+|..|
T Consensus       330 ia~~yfY~~~PE~AlryYRRiLqmG~~speLf  361 (478)
T KOG1129|consen  330 IAVGYFYDNNPEMALRYYRRILQMGAQSPELF  361 (478)
T ss_pred             eeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence              344445788888888888887665555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=88.28  E-value=6.5  Score=27.11  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=47.0

Q ss_pred             HHHHHHHHhcc-CcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------H---
Q 033770           17 FVAVLTACARA-RLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------W---   74 (112)
Q Consensus        17 ~~~li~~~~~~-~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------~---   74 (112)
                      +..+=..|-+. |++++|...+++...   ..|-.- -...+.-+...+.+.|++++|.++|              |   
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~  196 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK  196 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence            33344445555 677777777666553   112111 1334456667788888888888888              1   


Q ss_pred             -------HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           75 -------SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        75 -------~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                             -.+...||...|.+.+++.....|.
T Consensus       197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence                   2334457888888888887766653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.05  E-value=1.6  Score=20.29  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLL   41 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~   41 (112)
                      .+++.|=..|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456667777777777777777776655

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.85  E-value=5  Score=28.11  Aligned_cols=55  Identities=15%  Similarity=0.075  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ++..++.++...|+.+.+...+++...   ..| |-..|..+|.+|.+.|+..+|.+.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y  210 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAY  210 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence            455677777788888888888888875   234 8888999999999999999999887

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.70  E-value=4.6  Score=28.43  Aligned_cols=66  Identities=8%  Similarity=0.031  Sum_probs=55.1

Q ss_pred             cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770            8 KGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus         8 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .|-.|+..+..++|...+..+++++-.++++......+..-|.-.|...|+.-.+.|+..-..+++
T Consensus       196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            356778888888999999999999999999888752356668889999999999999988888887

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=87.65  E-value=2  Score=29.22  Aligned_cols=44  Identities=20%  Similarity=0.151  Sum_probs=31.5

Q ss_pred             HHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           59 LLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        59 ~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .+.+.|++++|.+.|                  |  .++-+.++.+.|...+++..+..|+++.
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            345567777777777                  2  5556778888888888888887777654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.57  E-value=4.9  Score=28.00  Aligned_cols=34  Identities=18%  Similarity=0.097  Sum_probs=28.0

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      .-|...|++++|--.++++.-.+|.++-.+--++
T Consensus       162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla  195 (289)
T KOG3060|consen  162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA  195 (289)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            8888899999999999999988898876655443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.41  E-value=0.86  Score=20.44  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=17.9

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      ..+...|+.+.|.+.|++..++.|+
T Consensus         9 ~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    9 KIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566777888888888877776663

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=87.05  E-value=8.5  Score=30.16  Aligned_cols=97  Identities=23%  Similarity=0.283  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHH------HHHHhcCChhHHHHHH------------H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVV------DLLGRAGLLSEANEFL------------W   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li------~~~~~~g~~~~A~~~f------------~   74 (112)
                      ....|....-+.--.|+...|..+.+..++...-.|+...|.-..      .-..+.|.+++|.+-+            +
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~  221 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF  221 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence            456777788888888999999999999986322246666664222      2347889999999988            2


Q ss_pred             -----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           75 -----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        75 -----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                           .-+.+.+++++|..++.......|++..+|..+..
T Consensus       222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~  261 (700)
T KOG1156|consen  222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK  261 (700)
T ss_pred             hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence                 66678899999999999999999999887766543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.99  E-value=2.8  Score=31.59  Aligned_cols=82  Identities=20%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChh
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVK   84 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~   84 (112)
                      -|+-.++.++|...|++..+   +.| ....|+.|=+=|.+..+-..|.+-+             |    .+|...+...
T Consensus       339 YYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  339 YYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            34455667788888877553   444 4556666666777777777777766             3    4444444444


Q ss_pred             HHHHHHHHHHhcCCCCCcchhhh
Q 033770           85 LSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        85 ~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      -|+-.|++..++.|.|+..++.|
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHH
Confidence            44444444444444444444433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.82  E-value=3.7  Score=31.20  Aligned_cols=50  Identities=14%  Similarity=0.110  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           50 MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        50 ~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      +..|--+--+.-|.+++++++..|             |    ..+...+++++|.+-++...++.|.
T Consensus       428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            333333333344555666666666             1    6666667777777777777776665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=86.80  E-value=6.4  Score=31.33  Aligned_cols=74  Identities=22%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHH--HH-------------H----HHHHhhCChhH
Q 033770           26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANE--FL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~f-------------~----~~~~~~g~~~~   85 (112)
                      ..|..++|.+.|..-   .-+.| ++.+-.++-..+.+.|+..-|.+  ++             |    ..+.+.|+.+.
T Consensus       696 ~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             HHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            345566666666553   34566 45566788888888888877777  55             5    88889999999


Q ss_pred             HHHHHHHHHhcCCCCCc
Q 033770           86 SHEVGKRLLELQPEHCR  102 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~  102 (112)
                      |-+.|+...++.+.+|.
T Consensus       773 Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  773 AAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHhhccCCCc
Confidence            99999999887776654

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.49  E-value=5  Score=26.00  Aligned_cols=51  Identities=16%  Similarity=-0.037  Sum_probs=38.4

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ......+.+......+...+.....|+...|..++.++...|+.++|.++.
T Consensus       117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~  167 (193)
T PF11846_consen  117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWL  167 (193)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            333556655555555555544567799999999999999999999999887

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.03  E-value=1.3  Score=31.77  Aligned_cols=37  Identities=8%  Similarity=0.178  Sum_probs=32.7

Q ss_pred             hhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770            6 YEKGLRANEVTFVAVLTACARARLVELGLELFHSLLG   42 (112)
Q Consensus         6 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~   42 (112)
                      .+.|+-||.+|++.+|+.+.+.+++.+|.++.-.|..
T Consensus       127 IqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  127 IQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             chhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3579999999999999999999999988888777664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.94  E-value=6  Score=30.15  Aligned_cols=60  Identities=12%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .||.-.|++.|+--.+-..++.|..++++..   -+.|++.+|---.+-=-++|++.-|..++
T Consensus       171 ~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  171 EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4455555555554444444555555554443   13344444444444444444444444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=85.75  E-value=2.8  Score=33.21  Aligned_cols=74  Identities=14%  Similarity=0.145  Sum_probs=55.9

Q ss_pred             HHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcC--
Q 033770           37 FHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQ--   97 (112)
Q Consensus        37 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~--   97 (112)
                      +.++.. ..+.=|...|..|.-+..++|+++.+.+.|             |    ..+...|.-..|..+.++-....  
T Consensus       311 ~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~  389 (799)
T KOG4162|consen  311 LRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ  389 (799)
T ss_pred             HHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence            334443 345568889999999999999999999999             5    66677788888999988877655  


Q ss_pred             CCCCcchhhhhccc
Q 033770           98 PEHCRRYVVLSNVH  111 (112)
Q Consensus        98 ~~~~~~~~~l~~~y  111 (112)
                      |++++.+.+.+.+|
T Consensus       390 ps~~s~~Lmasklc  403 (799)
T KOG4162|consen  390 PSDISVLLMASKLC  403 (799)
T ss_pred             CCcchHHHHHHHHH
Confidence            77777766666554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.47  E-value=4.4  Score=23.94  Aligned_cols=53  Identities=17%  Similarity=0.281  Sum_probs=41.7

Q ss_pred             HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH
Q 033770            5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL   59 (112)
Q Consensus         5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~   59 (112)
                      +-...+.|+.....+.|+||-+.+|+..|.++|+..+-  ++..+..+|..++.-
T Consensus        33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~--K~~~~~~~y~~~lqe   85 (103)
T cd00923          33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD--KCGAHKEIYPYILQE   85 (103)
T ss_pred             HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HccCchhhHHHHHHH
Confidence            33456889999999999999999999999999999874  333355577766653

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=85.47  E-value=2.1  Score=30.22  Aligned_cols=44  Identities=9%  Similarity=0.132  Sum_probs=34.0

Q ss_pred             CCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH
Q 033770           10 LRANEVT-FVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG   54 (112)
Q Consensus        10 ~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~   54 (112)
                      +.||+.+ |+.-|..-.+.||+++|+++.++.++ .|+.--..++-
T Consensus       252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~-LG~~~Ar~tFi  296 (303)
T PRK10564        252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAER-LGSTSARSTFI  296 (303)
T ss_pred             cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCchHHHHHH
Confidence            4455554 57899999999999999999999997 88875544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.77  E-value=3.4  Score=28.68  Aligned_cols=86  Identities=9%  Similarity=0.045  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHH---HHHHHHhcCChhHHHHHH------H----------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGC---VVDLLGRAGLLSEANEFL------W----------   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~f------~----------   74 (112)
                      ...|+.-++.+ ++|++.+|..-|..-++  +.+-+..+=|+   |-..+...|++++|..+|      |          
T Consensus       142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         142 TKLYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hHHHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            34688888765 56779999999999885  33323333332   667788999999999999      1          


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                          .+..+.|+.++|...++++.+.=|..+.
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence                6667788999999999998876675543

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.75  E-value=4.7  Score=25.42  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770           12 ANEVTFVAVLTACARARL-VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE   71 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~   71 (112)
                      .|.-+|.+++++.+++.. --.+..+|..|++ .+.+++..-|-.||++..+. ...+...
T Consensus        77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g-~~~~~~~  135 (145)
T PF13762_consen   77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG-YFHDSLY  135 (145)
T ss_pred             cccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC-CCCcchH
Confidence            356679999999998888 5678899999997 78999999999999997765 4444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.33  E-value=17  Score=28.07  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      .......+.+..++|-.+.+..+-.+|...++.|=-.|--.|++++|.+-|             |    ...+...+..+
T Consensus       403 s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~E  482 (579)
T KOG1125|consen  403 SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEE  482 (579)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHH
Confidence            334455566777778777765676688888888888899999999999999             7    67777778999


Q ss_pred             HHHHHHHHHhcCCCC
Q 033770           86 SHEVGKRLLELQPEH  100 (112)
Q Consensus        86 a~~~~~~m~~~~~~~  100 (112)
                      |...+++..+++|.=
T Consensus       483 AIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  483 AISAYNRALQLQPGY  497 (579)
T ss_pred             HHHHHHHHHhcCCCe
Confidence            999999999999963

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.31  E-value=16  Score=28.04  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             HHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------H----HHHHhhCChh
Q 033770           21 LTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------W----SACKIHGAVK   84 (112)
Q Consensus        21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------~----~~~~~~g~~~   84 (112)
                      +..--..|++..|.++|++-.   ...||...|++.|+.=.|-.+++.|..++            |    +-=-++|++.
T Consensus       148 ~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~  224 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA  224 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence            444456799999999999864   57899999999999999999999999998            4    2224678888


Q ss_pred             HHHHHHHHHHh
Q 033770           85 LSHEVGKRLLE   95 (112)
Q Consensus        85 ~a~~~~~~m~~   95 (112)
                      .+.+++....+
T Consensus       225 ~aR~VyerAie  235 (677)
T KOG1915|consen  225 LARSVYERAIE  235 (677)
T ss_pred             HHHHHHHHHHH
Confidence            88888887765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.28  E-value=12  Score=26.10  Aligned_cols=52  Identities=19%  Similarity=0.358  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           50 MEHYGCVVDLLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        50 ~~~~~~li~~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ..-|+.-++.| +.|++.+|..-|                  |  .++-..|+.++|..+|..+.+.-|..+.
T Consensus       142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K  213 (262)
T COG1729         142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK  213 (262)
T ss_pred             hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC
Confidence            44777777655 677899999998                  6  7888889999999999999876666544

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.09  E-value=13  Score=26.90  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCC-CCcchhhhhccc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPE-HCRRYVVLSNVH  111 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~l~~~y  111 (112)
                      ....+.|-+..|.++.+-+..++|. ||...-+.+..|
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~  148 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY  148 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            8889999999999999999999998 776555555444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=84.04  E-value=6.5  Score=29.44  Aligned_cols=48  Identities=13%  Similarity=-0.039  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                      +...|+-+-.+|.+.|++++|...|                |    .+|...|+.++|...+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6778888999999999999999999                3    6788899999999999998875

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.79  E-value=7.1  Score=31.08  Aligned_cols=73  Identities=21%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----H----HHHHhhC
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----W----SACKIHG   81 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~----~~~~~~g   81 (112)
                      -||.--|=-=+.+.+..+++++-+++-..+++       ++.|-=.+.+|.+.|+.+||.+++     +    .+|.+.|
T Consensus       712 ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~  784 (829)
T KOG2280|consen  712 IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVG  784 (829)
T ss_pred             CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhc
Confidence            46666666667777777888776666555442       445555777888888888888888     2    6667777


Q ss_pred             ChhHHHHHH
Q 033770           82 AVKLSHEVG   90 (112)
Q Consensus        82 ~~~~a~~~~   90 (112)
                      ++.+|.++.
T Consensus       785 ~~~eAad~A  793 (829)
T KOG2280|consen  785 DVKEAADLA  793 (829)
T ss_pred             cHHHHHHHH
Confidence            777666544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=83.57  E-value=3.7  Score=19.80  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhh
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLG   42 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~   42 (112)
                      ++..+=.++...|++++|.+++++..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455667788888888888888888875

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=83.09  E-value=15  Score=29.12  Aligned_cols=21  Identities=10%  Similarity=0.104  Sum_probs=17.4

Q ss_pred             HHHHhhCChhHHHHHHHHHHh
Q 033770           75 SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~   95 (112)
                      ..|.+.|++++|..++++-.+
T Consensus       256 dYYIr~g~~ekarDvyeeai~  276 (835)
T KOG2047|consen  256 DYYIRSGLFEKARDVYEEAIQ  276 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHHHH
Confidence            778888899999888887764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=83.03  E-value=4.7  Score=26.40  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=33.7

Q ss_pred             HHHhcCChhHHHHHH------------------H--HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           59 LLGRAGLLSEANEFL------------------W--SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        59 ~~~~~g~~~~A~~~f------------------~--~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .+.+.|++++|.+.|                  |  .++-+.|+.+.|...++...+.-|.++.
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            456788899999988                  2  7778899999999999999998888764

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=82.88  E-value=3.8  Score=29.21  Aligned_cols=42  Identities=10%  Similarity=0.069  Sum_probs=35.1

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhhh
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARL-VELGLELFHSLLG   42 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~   42 (112)
                      |+++|...|+.||..+=..||.++++-+- ..+-.++.-.|.+
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            47899999999999999999999998876 4566666666664

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=82.59  E-value=15  Score=31.62  Aligned_cols=83  Identities=7%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc---CHHHHHHHHHHHHhcCChhHHHHHH-----H----------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP---IMEHYGCVVDLLGRAGLLSEANEFL-----W----------   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~f-----~----------   74 (112)
                      ....|-..|.-..+.+++++|+.++++....-.++-   -...|.++++.---.|.-+...++|     |          
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            456677778888888888888888887775211111   2346777777766677666667776     1          


Q ss_pred             -HHHHhhCChhHHHHHHHHHHh
Q 033770           75 -SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~   95 (112)
                       .-|.+.+..++|.++++.|.+
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~K 1558 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLK 1558 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHH
Confidence             566667777777777777775

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.28  E-value=13  Score=26.22  Aligned_cols=74  Identities=8%  Similarity=0.010  Sum_probs=46.7

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCcCHHHH----HHHHHHHHhcCChhHHHHHH----------H-------HHHHhhCChh
Q 033770           26 RARLVELGLELFHSLLGEFEVVPIMEHY----GCVVDLLGRAGLLSEANEFL----------W-------SACKIHGAVK   84 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~f----------~-------~~~~~~g~~~   84 (112)
                      +..++|-|.+-.++|..   + -+-.|-    +++|+...-.+.+.+|.=+|          |       .++...|+++
T Consensus       149 k~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence            44455555566666653   1 122333    35555555566677777776          3       5556678999


Q ss_pred             HHHHHHHHHHhcCCCCCcc
Q 033770           85 LSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        85 ~a~~~~~~m~~~~~~~~~~  103 (112)
                      +|+.+.++....++.+|.+
T Consensus       225 eAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKDPET  243 (299)
T ss_pred             HHHHHHHHHHhccCCCHHH
Confidence            9999999998766666553

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.16  E-value=4  Score=29.05  Aligned_cols=37  Identities=19%  Similarity=0.084  Sum_probs=31.9

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      +.|..+|.+.+|.++.+....++|-+...+-.|.+++
T Consensus       287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~l  323 (361)
T COG3947         287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASL  323 (361)
T ss_pred             HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence            8888999999999999999999998888777776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.79  E-value=2.5  Score=21.87  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      -++.+.|+.++|.+..+.+.+.+|++.-
T Consensus         9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    9 IGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            4667788888888888888888887654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.77  E-value=6.3  Score=22.29  Aligned_cols=51  Identities=14%  Similarity=0.113  Sum_probs=35.9

Q ss_pred             HHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHH
Q 033770           21 LTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEF   72 (112)
Q Consensus        21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~   72 (112)
                      +.-| +...-++|+..|....+..-=.|+ -.+...|+.+|+..|.+.+++++
T Consensus        14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 667788899999888753222233 23557899999999999887765

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=81.58  E-value=7.4  Score=30.84  Aligned_cols=63  Identities=22%  Similarity=0.361  Sum_probs=48.5

Q ss_pred             CCcCHHHHHHHHHHHHhcCChhHHHHHH-----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           46 VVPIMEHYGCVVDLLGRAGLLSEANEFL-----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        46 ~~p~~~~~~~li~~~~~~g~~~~A~~~f-----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      +.|-.-.--.+-..+...|-..+|..+|     |    ..|+..|+.++|.++...-.+ .|+++..|++|-.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence            4444445567788888999999999998     6    788888999999988887766 5667777776643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=81.31  E-value=7.5  Score=24.95  Aligned_cols=56  Identities=14%  Similarity=-0.022  Sum_probs=36.6

Q ss_pred             HHHHHHHHHH---hccCcHHHHHHHHHHhhhccCCCcCHHHHH-HHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTAC---ARARLVELGLELFHSLLGEFEVVPIMEHYG-CVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~---~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~f   73 (112)
                      .+.+.||...   .+.++.+++..+++.+.-   +.|.....- .--..+.+.|++++|.++|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlL   67 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLL   67 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3445555444   477889999999999863   445433332 2223467889999999998

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=81.00  E-value=19  Score=26.35  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=23.5

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHH
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLL   60 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~   60 (112)
                      .|+.++|++++..... ..-.++..+|+.+-..|
T Consensus       195 ~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIy  227 (374)
T PF13281_consen  195 PGDREKALQILLPVLE-SDENPDPDTLGLLGRIY  227 (374)
T ss_pred             CCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHH
Confidence            7888999999888543 35556777777666555

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=80.91  E-value=10  Score=23.68  Aligned_cols=40  Identities=15%  Similarity=0.200  Sum_probs=30.8

Q ss_pred             HHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           33 GLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        33 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..+-+..+-. +.+.|++..-.+-++++-|..++-.|.++|
T Consensus        68 vrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRil  107 (149)
T KOG4077|consen   68 VRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRIL  107 (149)
T ss_pred             HHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHH
Confidence            3344445553 788888888888889999999988888887

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=80.75  E-value=12  Score=23.61  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=16.7

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .++-+.++.+.|...++...+++|.++.
T Consensus        55 yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   55 YAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            4555566666666666666666665543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.14  E-value=3.7  Score=17.53  Aligned_cols=18  Identities=22%  Similarity=0.183  Sum_probs=10.3

Q ss_pred             HHHHHHHhcCChhHHHHH
Q 033770           55 CVVDLLGRAGLLSEANEF   72 (112)
Q Consensus        55 ~li~~~~~~g~~~~A~~~   72 (112)
                      .+-..+...|++++|.++
T Consensus         6 ~la~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHHHcCCHHHHHHH
Confidence            344556666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.92
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.92
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.74
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.74
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.75
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.63
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.6
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.48
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.47
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.45
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.42
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.42
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.4
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.39
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.38
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.32
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.3
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.28
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.27
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.27
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.26
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.24
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.17
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.1
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.07
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.06
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.06
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.06
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.03
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.03
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.02
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.01
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.0
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.0
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.99
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.91
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.9
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.88
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.87
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.84
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.84
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.8
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.75
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.71
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.67
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.59
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.56
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.5
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.47
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.38
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.37
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.37
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.34
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.3
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.21
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.1
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.07
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.03
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.02
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.02
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.01
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.99
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.97
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.97
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.95
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.93
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.89
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.85
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.84
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.77
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.71
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.71
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.71
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.68
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.67
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.62
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.6
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.6
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.55
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.49
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.32
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.21
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.14
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.11
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.03
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.93
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.93
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.86
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.82
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.21
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.07
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.7
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.67
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.38
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.89
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.83
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	93.8
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.75
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.33
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	93.29
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.22
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	92.87
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	92.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	92.5
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	91.35
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	90.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	90.03
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	87.45
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	86.96
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	86.81
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	86.13
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.57
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	84.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	84.17
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	83.8
1pc2_A	152	Mitochondria fission protein; unknown function; NM	83.3
2yru_A	118	Steroid receptor RNA activator 1; SRAP, structural	82.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	81.22
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	80.61

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.92  E-value=3e-25  Score=161.40  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=99.1

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +|++|++.|+.||.+|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|       
T Consensus        92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A           92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999997 899999999999999999999999999999       


Q ss_pred             -------H----HHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhcc
Q 033770           74 -------W----SACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNV  110 (112)
Q Consensus        74 -------~----~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~  110 (112)
                             |    .+|++.|++++|.+++++|.+.+ .++..+|.+|...
T Consensus       171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~  219 (501)
T 4g26_A          171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW  219 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence                   3    99999999999999999999733 2355666666543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.92  E-value=8.6e-25  Score=159.00  Aligned_cols=110  Identities=17%  Similarity=0.238  Sum_probs=99.3

Q ss_pred             ChHHHhhcCCCCCHHHHHHHHHHHhccCc---------HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 033770            1 MVDEMYEKGLRANEVTFVAVLTACARARL---------VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANE   71 (112)
Q Consensus         1 l~~~M~~~g~~p~~~t~~~li~~~~~~~~---------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~   71 (112)
                      +|++|++.|++||.+|||+||++|++.+.         +++|.++|++|.. .|+.||..|||+||++|++.|++++|.+
T Consensus        48 lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~  126 (501)
T 4g26_A           48 LYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFD  126 (501)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            58999999999999999999999997654         7999999999997 8999999999999999999999999999


Q ss_pred             HH--------------H----HHHHhhCChhHHHHHHHHHHhcC-CCCCcchhhhhccc
Q 033770           72 FL--------------W----SACKIHGAVKLSHEVGKRLLELQ-PEHCRRYVVLSNVH  111 (112)
Q Consensus        72 ~f--------------~----~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~l~~~y  111 (112)
                      +|              |    .+|++.|++++|.++|++|.+.+ .++..+|..|++.|
T Consensus       127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99              4    99999999999999999999744 34666777777665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.74  E-value=7.7e-18  Score=129.64  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             hHHHh---hcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh-hHHHHHH
Q 033770            2 VDEMY---EKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL-SEANEFL   73 (112)
Q Consensus         2 ~~~M~---~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~f   73 (112)
                      |++|.   +.|+.||++|||+||++||+.|++++|.++|++|.. .|+.||++|||+||+++|+.|+. ++|.++|
T Consensus       150 f~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll  224 (1134)
T 3spa_A          150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAALQCMGRQDQDAGTIERCL  224 (1134)
T ss_dssp             HHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            44443   457788888888888888888888888888888886 68888888888888888888774 5677777

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.74  E-value=3.8e-18  Score=131.30  Aligned_cols=86  Identities=13%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhh--ccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------H-
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLG--EFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------W-   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------~-   74 (112)
                      --..|||+||++||+.|++++|..+|+.|.+  +.|+.||++|||+||++||+.|++++|.++|              | 
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            3457999999999999999999999988763  2589999999999999999999999999999              3 


Q ss_pred             ---HHHHhhCCh-hHHHHHHHHHHhcC
Q 033770           75 ---SACKIHGAV-KLSHEVGKRLLELQ   97 (112)
Q Consensus        75 ---~~~~~~g~~-~~a~~~~~~m~~~~   97 (112)
                         .++|+.|+. +.|.++|++|.+.+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence               899999985 78999999999744

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.35  E-value=1.3e-11  Score=89.36  Aligned_cols=109  Identities=8%  Similarity=0.021  Sum_probs=94.1

Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc----CCCcC--HHHHHHHHHHHHhcCChhHHHHHH--
Q 033770            2 VDEMYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEF----EVVPI--MEHYGCVVDLLGRAGLLSEANEFL--   73 (112)
Q Consensus         2 ~~~M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~f--   73 (112)
                      |++|.+.. +.|..+|+.+...+.+.|++++|..+|+++.. .    +..|+  ..+|+.+..+|.+.|++++|.++|  
T Consensus       464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL-LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45555443 45788999999999999999999999999875 4    77787  789999999999999999999998  


Q ss_pred             -----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcccC
Q 033770           74 -----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVHT  112 (112)
Q Consensus        74 -----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~ya  112 (112)
                                 |    ..|.+.|++++|.+.++++.+..|+++..+..|.++|.
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence                       3    88899999999999999999999999999999988874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.18  E-value=1.5e-10  Score=83.80  Aligned_cols=94  Identities=13%  Similarity=-0.014  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..+|+.+...|.+.|++++|.++|+++.+ . -+.+..+|+.++.+|.+.|++++|.++|             |    .
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  449 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSST-M-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM  449 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444555555555555555555555555442 1 1123445555555555555555555555             1    4


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      .|.+.|++++|.++|+++.+..|.++..+..+.
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  482 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELG  482 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            455555555555555555555555444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=1.2e-07  Score=65.29  Aligned_cols=93  Identities=12%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..+|..+...+.+.|++++|...++++.+ . .+.+..+++.+...|.+.|++++|.+.|             |    .
T Consensus       270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          270 FPDAYCNLANALKEKGSVAEAEDCYNTALR-L-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            345666666666777777777777766664 2 2346666677777777777777777766             1    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .+.+.|+.++|.+.++++.+..|+.+..+..+
T Consensus       348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l  379 (388)
T 1w3b_A          348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNM  379 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence            66677777777777777777777665555444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.67  E-value=3.2e-07  Score=52.72  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      ..+|..+-..+.+.|++++|...++++.. .. +.+...+..+...|.+.|++++|.+.|             |    ..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            56788888999999999999999999985 32 346788999999999999999999998             2    77


Q ss_pred             HHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           77 CKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      +...|+.++|...++++.+..|.++.....+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  118 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLG  118 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            88899999999999999998888776555444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.63  E-value=3.8e-07  Score=52.87  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..++..+...+...|++++|..+++++.. .+ +.+...+..+...|.+.|++++|.+.|             |    .
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  111 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN  111 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            455566666666666777777777766654 22 234556666666667777777776666             1    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      .+...|+.++|...++++.+..|.
T Consensus       112 ~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          112 AYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHccHHHHHHHHHHHHccCCC
Confidence            556666777777777666655553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.63  E-value=1.1e-06  Score=50.84  Aligned_cols=92  Identities=20%  Similarity=0.264  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      .|..+...+...|++++|..+++++.. .. +.+...+..+...+.+.|++++|.+.|             |    ..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            567788889999999999999999885 33 346788889999999999999999998             2    6778


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      ..|+.++|.+.++++.+..|.++..+..+..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  111 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGN  111 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            8999999999999999888877655544443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=4.8e-07  Score=62.32  Aligned_cols=98  Identities=15%  Similarity=0.267  Sum_probs=79.8

Q ss_pred             CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H--
Q 033770           11 RA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--   74 (112)
Q Consensus        11 ~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--   74 (112)
                      .| +..++..+...+.+.|++++|...++++.. .. +.+..+|..+...|.+.|++++|.+.|             |  
T Consensus       233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  310 (388)
T 1w3b_A          233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN  310 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence            44 478888899999999999999999999885 22 225778899999999999999999998             2  


Q ss_pred             --HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                        ..+...|+.++|.+.++++.+..|+++..+..+..+
T Consensus       311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  348 (388)
T 1w3b_A          311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence              777888999999999999998888876666555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.58  E-value=4.7e-07  Score=61.22  Aligned_cols=27  Identities=15%  Similarity=0.130  Sum_probs=12.4

Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ++.+.|++++|++.+++..+..|+++.
T Consensus       209 ~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          209 CHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            334444444444444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.51  E-value=1.4e-06  Score=50.71  Aligned_cols=98  Identities=7%  Similarity=-0.068  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H--
Q 033770           10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W--   74 (112)
Q Consensus        10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~--   74 (112)
                      .+.+...|..+-..+.+.|++++|...+++... . -..+...+..+-..|.+.|++++|.+.|             |  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-R-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            355777888889999999999999999999875 2 2237888999999999999999999999             2  


Q ss_pred             --HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                        ..+...|+.++|.+.+++..+..|.+...+..+..
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  126 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR  126 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence              77888999999999999999988877665554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.50  E-value=1.7e-06  Score=52.84  Aligned_cols=92  Identities=15%  Similarity=0.010  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..++..+...+...|++++|...+++..+ . .+.+...+..+...|.+.|++++|.+.|             |    .
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLA-D-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            455555666666666666666666666553 2 1224555566666666666666666666             1    4


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      .+...|+.++|.+.+++..+..|.++..+..
T Consensus       119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  149 (186)
T 3as5_A          119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRA  149 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence            4555566666666666665555554444333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.50  E-value=2e-06  Score=55.59  Aligned_cols=89  Identities=7%  Similarity=-0.101  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      +...+..+-..+.+.|++++|..++++... .+..| +...+..+...|.+.|++++|.+.|             |    
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  182 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA  182 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            344555555555555555555555555543 22333 3444455555555555555555555             1    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ..+...|+.++|...+++..+..|.++.
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~  210 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGGGQNAR  210 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            4444455555555555555544444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.48  E-value=3.5e-06  Score=53.90  Aligned_cols=87  Identities=13%  Similarity=0.196  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+.+.|++++|...+++... .. +.+...+..+...|.+.|++++|.+.+             |    .
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  133 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALE-LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT  133 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344555555555555555555555555543 11 124445555555555555555555555             1    3


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      .+...|+.++|...+++..+..|.++
T Consensus       134 ~~~~~~~~~~A~~~~~~~~~~~~~~~  159 (243)
T 2q7f_A          134 VLVKLEQPKLALPYLQRAVELNENDT  159 (243)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCccH
Confidence            34444555555555555444444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.47  E-value=7.9e-07  Score=62.02  Aligned_cols=89  Identities=15%  Similarity=0.017  Sum_probs=79.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +.+...+..+...+.+.|++++|..+|+++.. . .+.+...|..+...|.+.|++++|.+.|             |   
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            44677889999999999999999999999985 2 3347899999999999999999999999             2   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                       ..+.+.|++++|.+.|+++.+..|.++
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence             788899999999999999999888766

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.47  E-value=1.7e-06  Score=51.55  Aligned_cols=92  Identities=5%  Similarity=-0.081  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC   77 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~   77 (112)
                      ..+...=..+.+.|++++|...|++..+ .. +.+...|.-+-..|.+.|++++|.+.|             |    .++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK-RD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            3455556678899999999999999875 22 237888999999999999999999999             3    788


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ...|++++|.+.|++..+++|+++....-|.
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            8999999999999999999999877655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.46  E-value=3.1e-06  Score=53.37  Aligned_cols=93  Identities=9%  Similarity=-0.065  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHhcc-CcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           13 NEVTFVAVLTACARA-RLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +..++..+...+... |++++|...+++... .+..| +...+..+...|.+.|++++|.+.|             |   
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  153 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL  153 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            556666777777777 777777777777764 33333 3556667777777777777777777             1   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCC-CCCcchhh
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQP-EHCRRYVV  106 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~  106 (112)
                       ..+...|+.++|.+.+++..+..| .++..+..
T Consensus       154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  187 (225)
T 2vq2_A          154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL  187 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence             566677777777777777776666 55444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.46  E-value=2.2e-06  Score=49.52  Aligned_cols=95  Identities=12%  Similarity=0.019  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      .+...+..+-..+...|++++|...+++... . .+.+...+..+...|.+.|++++|.+.+             |    
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIE-L-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            4567788888899999999999999999875 2 2336788899999999999999999998             2    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+...|+.++|...+++..+..|.++..+..+.
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            7788999999999999999998888766555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.45  E-value=3.5e-06  Score=58.76  Aligned_cols=85  Identities=11%  Similarity=-0.028  Sum_probs=74.4

Q ss_pred             HHHHhccCcHHHHHHHHHHhhhccCCCcC-----HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           21 LTACARARLVELGLELFHSLLGEFEVVPI-----MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      ...+.+.|++++|...++++..   ..|+     ...|..+...+.+.|++++|.+.+             |    ..|.
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            7889999999999999999985   2344     457899999999999999999998             3    8889


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..|+.++|...+++..+..|+++..+..+.
T Consensus       341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          341 IEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            999999999999999999999877766665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.44  E-value=2.8e-06  Score=52.72  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      +...|..+=..+.+.|++++|...|++..+ .  .| +...+..+-..|.+.|++++|.+.+                  
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-A--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            455666666666777777777777776654 2  23 5566666666777777777777666                  


Q ss_pred             -----------------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           74 -----------------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        74 -----------------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                                                   |    ..+.+.|+.++|.+.|++..+..|.++..+..+..
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL  149 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence                                         1    56667778888888888877777777665554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.44  E-value=3.6e-06  Score=47.77  Aligned_cols=94  Identities=9%  Similarity=-0.028  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+...|++++|...+++... . .+.+...+..+-..|.+.|++++|.+.+             |    .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            455677788889999999999999999875 2 2237788888999999999999999998             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      .+...|+.++|.+.+++..+..|.++.....+.
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            888899999999999999998888776555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.43  E-value=3.3e-06  Score=54.05  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      ...+..+...+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.|             |    ..
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  202 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVE-L-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT  202 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            33444444444444444444444444432 1 1123344444444444444444444444             1    44


Q ss_pred             HHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           77 CKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      +...|+.++|...+++..+..|+++..+
T Consensus       203 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~  230 (243)
T 2q7f_A          203 YAYKENREKALEMLDKAIDIQPDHMLAL  230 (243)
T ss_dssp             HHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHccCcchHHHH
Confidence            4455555555555555555555444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.42  E-value=4.6e-06  Score=50.87  Aligned_cols=95  Identities=12%  Similarity=-0.020  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +.+...+..+...+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.+             |   
T Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  150 (186)
T 3as5_A           73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE-A-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI  150 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence            34677888899999999999999999999885 2 3347788899999999999999999999             2   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                       ..+...|+.++|...+++..+..|+++....++
T Consensus       151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  184 (186)
T 3as5_A          151 AFSYEQMGRHEEALPHFKKANELDEGASVELALV  184 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGGGS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCchhhHhhc
Confidence             778889999999999999998888776655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.42  E-value=5.4e-06  Score=53.56  Aligned_cols=96  Identities=15%  Similarity=0.072  Sum_probs=81.0

Q ss_pred             CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770           10 LRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-   74 (112)
Q Consensus        10 ~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-   74 (112)
                      ..| +...+..+-..+.+.|++++|...+++... .. +.+...+..+...|.+.|++++|.+.+             | 
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  213 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL  213 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            445 567788888999999999999999999885 32 236888999999999999999999999             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                         ..+...|+.++|.+.++++.+..|+++....++
T Consensus       214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence               677889999999999999999999877655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.40  E-value=2.7e-06  Score=54.82  Aligned_cols=97  Identities=18%  Similarity=0.054  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H--
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W--   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~--   74 (112)
                      +++...+..+=..+.+.|++++|...+++..+   ..| +...+..+-..+.+.|++++|.+.|             |  
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            56777888888899999999999999999874   234 7788889999999999999999998             2  


Q ss_pred             --HHHHhh-----------CChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           75 --SACKIH-----------GAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        75 --~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                        ..+...           |+.++|...+++..+..|+++..+..+..+
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~  127 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV  127 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence              667777           999999999999999999887766655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.39  E-value=1.4e-06  Score=59.44  Aligned_cols=85  Identities=14%  Similarity=0.023  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..++..+-..+.+.|++++|...+++... . -+.+..+|+.+...|.+.|++++|.+.|             |    .
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  289 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALT-V-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI  289 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            456666666666666777777777766654 1 1225566666666777777777776666             2    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      .|...|+.++|...+++..+..|.
T Consensus       290 ~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          290 SCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcc
Confidence            566667777777777766655544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.38  E-value=5.7e-06  Score=52.14  Aligned_cols=94  Identities=17%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc-CChhHHHHHH---------------H--
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA-GLLSEANEFL---------------W--   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~f---------------~--   74 (112)
                      +...+..+-..+...|++++|...+++... . .+.+...+..+...|.+. |++++|.+.+               |  
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  118 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALS-I-KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN  118 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence            456666777777777777777777777664 2 123566677777777777 7777777776               1  


Q ss_pred             --HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 --SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                        ..+...|+.++|...+++..+..|.++..+..+.
T Consensus       119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  154 (225)
T 2vq2_A          119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA  154 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence              5666677777777777777776666555444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=1.3e-05  Score=47.44  Aligned_cols=94  Identities=11%  Similarity=-0.063  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL-------------W   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f-------------~   74 (112)
                      .+...+..+-..+.+.|++++|...+++..+   ..|+    ...|..+-..|.+.|++++|.+.+             |
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            3677788888899999999999999999874   3465    678888899999999999999998             2


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                          ..+...|+.++|...+++..+..|.++.....+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence                7788899999999999999999998776555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.37  E-value=3.1e-06  Score=57.13  Aligned_cols=74  Identities=11%  Similarity=0.037  Sum_probs=38.3

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH-HHH
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL-SHE   88 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~-a~~   88 (112)
                      .|++++|..+|+++.. . .+.+...++.+-..|.+.|++++|.+.|             |    ..+...|+.++ +.+
T Consensus       179 ~~~~~eA~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~  256 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMAD-K-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR  256 (291)
T ss_dssp             TTHHHHHHHHHHHHHH-H-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            3555555555555553 1 2335555555555555555555555555             1    33444455543 345


Q ss_pred             HHHHHHhcCCCCCc
Q 033770           89 VGKRLLELQPEHCR  102 (112)
Q Consensus        89 ~~~~m~~~~~~~~~  102 (112)
                      .+++..+.+|+++.
T Consensus       257 ~~~~~~~~~P~~~~  270 (291)
T 3mkr_A          257 YLSQLKDAHRSHPF  270 (291)
T ss_dssp             HHHHHHHHCTTCHH
T ss_pred             HHHHHHHhCCCChH
Confidence            55555555555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.32  E-value=3.7e-06  Score=57.07  Aligned_cols=86  Identities=13%  Similarity=0.011  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..++..+-..+.+.|++++|...+++... . -+.+...|..+...|.+.|++++|.+.|             |    .
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  293 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALS-V-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI  293 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            578899999999999999999999999875 2 2236788999999999999999999998             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                      .+.+.|+.++|...+++..+..|.+
T Consensus       294 ~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          294 SCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            8888999999999999998877655

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.30  E-value=1.1e-05  Score=49.46  Aligned_cols=91  Identities=12%  Similarity=0.014  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      .+...+..+-..+.+.|++++|...|++... .. .-+...|..+-..|.+.|++++|.+.|             |    
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS-IA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3566777888889999999999999999885 22 237888899999999999999999999             3    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      ..+...|+.++|...|++..++.|+++..+
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            788899999999999999999889877643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.28  E-value=1.3e-05  Score=48.84  Aligned_cols=93  Identities=9%  Similarity=-0.104  Sum_probs=76.7

Q ss_pred             CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770           10 LRA-NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-   74 (112)
Q Consensus        10 ~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-   74 (112)
                      +.| +...+..+-..+.+.|++++|...|++... .. +.+...|..+-..|.+.|++++|.+.|             | 
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            345 445566677788899999999999999875 22 237788888989999999999999999             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                         .++...|+.++|...|+...+..|+++...
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence               788899999999999999999888776653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.27  E-value=1.7e-05  Score=50.81  Aligned_cols=90  Identities=8%  Similarity=-0.044  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      |...+...=..+.+.|++++|...|++... ..-.++...+.-+-..|.+.|++++|.+.|             |    .
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            456777777788899999999999999886 444367777777999999999999999999             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      .+...|+.++|...+++..+..|.++..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            8889999999999999999999988743

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.27  E-value=1.2e-05  Score=52.36  Aligned_cols=87  Identities=17%  Similarity=0.088  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..+|..+-..+...|++++|...|++... .. +.+...|..+-..|.+.|++++|.+.|             |    .
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  119 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALA-IR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  119 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            567788888889999999999999999875 22 236788889999999999999999998             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      .+...|+.++|...++++.+..|.++
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            77888999999999999888888765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.27  E-value=6e-06  Score=54.85  Aligned_cols=87  Identities=7%  Similarity=-0.060  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +.+..++..+-..+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.|             |   
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  246 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-L-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM  246 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            34678888999999999999999999999885 2 2336788999999999999999999998             2   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                       ..+...|+.++|.+.+++..+..|.
T Consensus       247 ~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          247 AVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCc
Confidence             7888899999999999999887776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.26  E-value=1.2e-05  Score=48.27  Aligned_cols=91  Identities=10%  Similarity=-0.094  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      ...+..+-..+.+.|++++|...|++... .. +.+...|..+-..|.+.|++++|.+.|             |    .+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCM-LD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            34455566778899999999999999875 22 237778888999999999999999999             2    78


Q ss_pred             HHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770           77 CKIHGAVKLSHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      +...|+.++|.+.++...+..|.++....+
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence            889999999999999999888877765443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.25  E-value=1.3e-05  Score=49.41  Aligned_cols=90  Identities=7%  Similarity=-0.063  Sum_probs=75.4

Q ss_pred             CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------
Q 033770            9 GLRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------   73 (112)
Q Consensus         9 g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------   73 (112)
                      .+.|+ ...+..+=..+.+.|++++|...|++... .  .| +...|..+=..|.+.|++++|.+.|             
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-Y--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence            34453 34566667788899999999999999885 2  34 7888899999999999999999999             


Q ss_pred             H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           74 W----SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      |    .++...|+.++|...|++..+..|+.+
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            3    888999999999999999999888653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.25  E-value=1.8e-05  Score=52.55  Aligned_cols=95  Identities=11%  Similarity=0.047  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-------CCCcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEF-------EVVPIMEHYGCVVDLLGRAGLLSEANEFL------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------   73 (112)
                      +..++..+-..+.+.|++++|...+++.....       ....+...+..+-..|.+.|++++|.+.|            
T Consensus       192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  271 (330)
T 3hym_B          192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS  271 (330)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence            44555566666666666666666666555310       01223455666666666666666666665            


Q ss_pred             -H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 -W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 -~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                       |    ..+...|+.++|.+.+++..+..|+++..+..+
T Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (330)
T 3hym_B          272 TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML  310 (330)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence             1    555556666666666666666666555444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1e-05  Score=52.01  Aligned_cols=93  Identities=14%  Similarity=0.067  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccC------------------------CCc-CHHHHHHHHHHHHhcCChhH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFE------------------------VVP-IMEHYGCVVDLLGRAGLLSE   68 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g------------------------~~p-~~~~~~~li~~~~~~g~~~~   68 (112)
                      ..+|..+-..+.+.|++++|...+++... ..                        ..| +...+..+-..|.+.|++++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            35555666666666666666666666553 11                        222 34445556666666666666


Q ss_pred             HHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           69 ANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        69 A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      |.+.|             |    ..+...|++++|...+++..+..|+++..+..+
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            66666             1    555566666666666666666666555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.23  E-value=7.5e-06  Score=55.78  Aligned_cols=99  Identities=15%  Similarity=0.044  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      ...++..+-..+.+.|++++|..+++++.....-.++...+..+...|.+.|++++|.+.|             |    .
T Consensus       176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  255 (365)
T 4eqf_A          176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA  255 (365)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3456777888999999999999999999863222226889999999999999999999999             3    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      .+...|+.++|...+++..+..|+++..+..+..+|
T Consensus       256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            888999999999999999999998877666655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.23  E-value=2.3e-05  Score=43.92  Aligned_cols=87  Identities=14%  Similarity=0.042  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H---
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W---   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~---   74 (112)
                      +...+..+-..+.+.|++++|...+++..+ .. ..+...|..+-..|.+.|++++|.+.|               |   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            445667777888999999999999999885 22 236778888999999999999999998               2   


Q ss_pred             -HHHHhh-CChhHHHHHHHHHHhcCCCCC
Q 033770           75 -SACKIH-GAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        75 -~~~~~~-g~~~~a~~~~~~m~~~~~~~~  101 (112)
                       ..+... |+.++|.+.++...+..|.++
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence             677888 999999999999998887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.21  E-value=9.7e-06  Score=49.42  Aligned_cols=94  Identities=11%  Similarity=-0.036  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      ...+-.+=..|.+.|++++|...|++..+   +.| +...|..+-..|.+.|++++|.+.|             |    .
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  107 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE  107 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455667788999999999999999875   235 7888999999999999999999999             2    6


Q ss_pred             HHHhhCChhHHHHH-HHHHHhcCCCCCcchhhhhcc
Q 033770           76 ACKIHGAVKLSHEV-GKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        76 ~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      .+.+.|+.++|.+. +++..++.|.++..+.+...+
T Consensus       108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l  143 (150)
T 4ga2_A          108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL  143 (150)
T ss_dssp             HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            77888998776655 588889999998887765543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.19  E-value=2e-05  Score=52.32  Aligned_cols=93  Identities=13%  Similarity=-0.002  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      +...|..+-..+...| +.++|...+++... .. +.+...|..+...|.+.|++++|.+.|             |    
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  166 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT-LE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG  166 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT-TC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            3445555555555666 56666666666553 11 124455566666666666666666665             1    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      ..+...|+.++|.+.+++..+..|.++..+..+
T Consensus       167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            455556666666666666666555554444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.5e-05  Score=46.58  Aligned_cols=90  Identities=7%  Similarity=-0.155  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      ...|..+=..+.+.|++++|...|++..+ .. +.+...|..+-..|.+.|++++|.+.|             |    ..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34566666778899999999999999875 22 236788999999999999999999999             2    78


Q ss_pred             HHhhCChhHHHHHHHHHHhcC------CCCCcchh
Q 033770           77 CKIHGAVKLSHEVGKRLLELQ------PEHCRRYV  105 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~  105 (112)
                      +...|+.++|...+++..+..      |.++....
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~  116 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ  116 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHH
Confidence            888999999999999999877      66554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.16  E-value=2.3e-05  Score=50.15  Aligned_cols=95  Identities=11%  Similarity=0.024  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------   73 (112)
                      +|...+..+-.++.+.|++++|...+++..+   ..| +...|..+-..|.+.|++++|.+.|                 
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  116 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY  116 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            6777888888899999999999999999875   234 6778889999999999999999998                 


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcCCC--CCcchhhhhc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQPE--HCRRYVVLSN  109 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~l~~  109 (112)
                         |    ..+...|+.++|.+.+++..+..|+  ++..+..+..
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence               2    5667789999999999999998887  6555544433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.15  E-value=1.1e-05  Score=54.59  Aligned_cols=90  Identities=19%  Similarity=0.082  Sum_probs=73.8

Q ss_pred             HHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCCh
Q 033770           21 LTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAV   83 (112)
Q Consensus        21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~   83 (112)
                      +..+.+.|++++|...++++.....-.++..++..+...|.+.|++++|.+.|             |    ..+...|+.
T Consensus       188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  267 (368)
T 1fch_A          188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS  267 (368)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence            44445889999999999999862212225889999999999999999999999             2    778889999


Q ss_pred             hHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           84 KLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        84 ~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ++|...+++..+..|.++..+..+..+
T Consensus       268 ~~A~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          268 EEAVAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999999887766665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.15  E-value=1.5e-05  Score=51.11  Aligned_cols=94  Identities=6%  Similarity=-0.146  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+.+.|++++|...+++... .. +.+...|..+...|.+.|++++|.+.|             |    .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~  215 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT  215 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            456777888899999999999999999985 22 347888999999999999999999999             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcC------CCCCcchhhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQ------PEHCRRYVVLS  108 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~l~  108 (112)
                      .+...|+.++|...+++..+..      |.+......|.
T Consensus       216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence            8889999999999999998877      76655555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.14  E-value=3.3e-05  Score=45.34  Aligned_cols=87  Identities=7%  Similarity=-0.156  Sum_probs=74.8

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +.+...|..+-..+.+.|++++|...|.+... .. +.+...|..+-..|.+.|++++|.+.|             |   
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            34677888888999999999999999999875 22 236788899999999999999999999             3   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                       ..+...|+.++|...+++..+..|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence             7788899999999999999987765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.13  E-value=2e-05  Score=55.96  Aligned_cols=95  Identities=8%  Similarity=-0.035  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      .|+..+|..+-..+.+.|++++|...+++... .. +.+...|..+...|.+.|++++|.+.|             |   
T Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  350 (537)
T 3fp2_A          273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVD-LN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL  350 (537)
T ss_dssp             CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc-cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34455555555566666666666666666553 11 124555566666666666666666665             1   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                       ..+...|+.++|...+++..+..|.++..+..+
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  384 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF  384 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence             455555666666666666665555555444433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.12  E-value=2.2e-05  Score=50.17  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             HHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHH----------------HHHHHHhcCChhHHHHHH----------
Q 033770           21 LTACARARLVELGLELFHSLLGEFEVVP-IMEHYGC----------------VVDLLGRAGLLSEANEFL----------   73 (112)
Q Consensus        21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~----------------li~~~~~~g~~~~A~~~f----------   73 (112)
                      -..+.+.|++++|...|++...   ..| +...|..                +-..|.+.|++++|.+.|          
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A           11 VSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            3455688999999999999875   234 3445555                788899999999999999          


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                         |    ..+...|+.++|...|++..+.+|+++..+..+..+
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence               2    778889999999999999999999988776655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.10  E-value=6.8e-05  Score=45.07  Aligned_cols=88  Identities=9%  Similarity=0.023  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC   77 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~   77 (112)
                      ..+..+-..+...|++++|...+++... . -+.+...+..+-..|.+.|++++|.+.+             |    ..+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4556666777788888888888888774 2 2236777888888888888888888888             2    667


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      ...|+.++|.+.+++..+..|.++..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~  118 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAK  118 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            778888888888888888777765544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.09  E-value=7.6e-05  Score=45.93  Aligned_cols=94  Identities=11%  Similarity=0.112  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-HHhcCCh--hHHHHHH-------------H-
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL-LGRAGLL--SEANEFL-------------W-   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~--~~A~~~f-------------~-   74 (112)
                      .+...|..+-..+...|++++|...+++... .. +.+...+..+-.. |.+.|++  ++|.+.|             | 
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  119 (177)
T 2e2e_A           42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM  119 (177)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence            4667888888999999999999999999875 22 2366777778788 7899998  9999998             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                         ..+...|+.+.|...+++..+..|+++....++
T Consensus       120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A          120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence               778889999999999999999899876654433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.08  E-value=3.6e-05  Score=49.44  Aligned_cols=95  Identities=14%  Similarity=0.015  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHhcc-----------CcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770           13 NEVTFVAVLTACARA-----------RLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      +...+..+-..+.+.           |++++|...+++..+   ..| +...|..+=..|.+.|++++|.+.|       
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            556777888888888           999999999999875   235 6778888889999999999999998       


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                           |    ..+...|+.++|...+++..+..|+++..+..+..+
T Consensus       149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~  194 (217)
T 2pl2_A          149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA  194 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence                 2    778899999999999999999999887766655443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.07  E-value=5.8e-05  Score=53.14  Aligned_cols=85  Identities=12%  Similarity=-0.059  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC   77 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~   77 (112)
                      ..+-..=..+.+.|++++|...|+++.. ..  ||...|..+...|.+.|++++|.+.|             |    ..+
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALE-LK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHh-cC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            4455666778899999999999999986 44  89999999999999999999999999             2    788


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ...|+.++|...|+++.+..|.+..
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccc
Confidence            8999999999999999987775543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.06  E-value=2.7e-05  Score=59.01  Aligned_cols=92  Identities=14%  Similarity=0.182  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      ..+|+.+=.++.+.|++++|...|++..+   +.| +...|+-+-..|.+.|++++|.+.|             |    .
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~  119 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS  119 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44555555555666666666666665543   123 3455555556666666666666665             2    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      .+...|+.++|.+.+++..+++|+++..+.-|.
T Consensus       120 ~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~  152 (723)
T 4gyw_A          120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA  152 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence            556666666676666666666666655554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.06  E-value=3.4e-05  Score=58.51  Aligned_cols=95  Identities=16%  Similarity=0.204  Sum_probs=80.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      +..+|+.|=..+.+.|++++|...|++..+   +.| +...|+-+=..|.+.|++++|.+.|             |    
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            466788888899999999999999999875   245 5788889999999999999999998             3    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ..+...|+.++|.+.|++..+++|++...+..|..+
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~  120 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI  120 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            788889999999999999999999887776665544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.06  E-value=2.2e-05  Score=51.08  Aligned_cols=89  Identities=9%  Similarity=0.018  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      .+..+-..+.+.|++++|...+++... .+-.|+  ...|..+-..|.+.|++++|.+.|             |    ..
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  117 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY  117 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            566666666666777777777666664 232222  223566666666667777776666             2    55


Q ss_pred             HHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           77 CKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      +...|++++|...+++..+..|.++..+.
T Consensus       118 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~  146 (272)
T 3u4t_A          118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFY  146 (272)
T ss_dssp             HHHTTCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHhhcCCCcHHHHH
Confidence            55666666666666666555555544443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.05  E-value=5.1e-06  Score=50.67  Aligned_cols=85  Identities=12%  Similarity=-0.001  Sum_probs=69.0

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           24 CARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      +...|++++|...++....   ..| +...+-.+=..|.+.|++++|.+.|             |    ..+...|++++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            4466889999999988653   334 4455567888899999999999999             3    78889999999


Q ss_pred             HHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           86 SHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      |...|++..+.+|+++..+..+..+|
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~  109 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELL  109 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999888777665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.03  E-value=5.3e-05  Score=52.04  Aligned_cols=95  Identities=12%  Similarity=0.026  Sum_probs=79.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----------------HHHHHHHHHHHHhcCChhHHHHHH---
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----------------MEHYGCVVDLLGRAGLLSEANEFL---   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~f---   73 (112)
                      +...+..+=..+.+.|++++|...|++... .  .|+                ...|.-+-..|.+.|++++|.+.|   
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS-W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            355677777888999999999999999875 2  233                588899999999999999999999   


Q ss_pred             ----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           74 ----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        74 ----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                                |    .++...|+.++|...|++..++.|.++..+..+..+
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence                      2    788899999999999999999999887766555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.03  E-value=4.9e-05  Score=49.44  Aligned_cols=94  Identities=9%  Similarity=-0.046  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H----H
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W----S   75 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~   75 (112)
                      .+...-..+.+.|++++|...+++..+ . -+.+...+..+...|.+.|++++|.+.|                |    .
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEA-K-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHH-T-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            344555677899999999999999885 2 2225558888889999999999999998                2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      .+...|+.++|.+.+++..+..|.++..+..+..+|
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  118 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF  118 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            788899999999999999999998887776665443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.02  E-value=9.1e-05  Score=42.51  Aligned_cols=84  Identities=7%  Similarity=-0.002  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------   73 (112)
                      ...|..+-..+...|++++|...+++... .. +.+...+..+-..|.+.|++++|.+.+                    
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKE-LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            45677778888999999999999999885 32 347788889999999999999999988                    


Q ss_pred             H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           74 W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      |    ..+...|+.+.|.+.+++..+..|+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            1    6677889999999999999987773

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.01  E-value=4.2e-05  Score=53.87  Aligned_cols=94  Identities=12%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..++..+-..+.+.|++++|...+++... ..  |+...+..+...|.+.|++++|.+.+             |    .
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  312 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence            345666677777777888888888777764 33  33666777777777777777777777             2    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      .+...|++++|...+++..+..|.++..+..+..
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  346 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC  346 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence            5666677777777777776666665554444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.00  E-value=4.5e-05  Score=47.13  Aligned_cols=88  Identities=11%  Similarity=0.060  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+...++.+.+...+.+... . .+-+...+..+-..|.+.|++++|.+.|             |    .
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           72 SAEAYYILGSANFMIDEKQAAIDALQRAIA-L-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL  149 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence            444555566667777888888888887764 2 2236778888999999999999999999             3    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .+.+.|+.++|.+.|++..+.+|+++.
T Consensus       150 ~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            888999999999999999998887644

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.00  E-value=0.00012  Score=47.43  Aligned_cols=92  Identities=17%  Similarity=0.005  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H-
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W-   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~-   74 (112)
                      +.+..+|..+-..+.+.|++++|...+++... . .+.+...+..+...|.+.|++++|.+.|               | 
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (275)
T 1xnf_A           74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-L-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  151 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh-c-CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            34678899999999999999999999999985 2 2236788999999999999999999999               2 


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      ..+...|+.++|...+++.....|++...+
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  181 (275)
T 1xnf_A          152 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGW  181 (275)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Confidence            445667899999999988887777655443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.00  E-value=9.3e-05  Score=46.57  Aligned_cols=81  Identities=11%  Similarity=-0.054  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      .+..+-..+.+.|++++|...+++..     .|+...|..+-..|.+.|++++|.+.|             |    ..+.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            34455567778999999999998764     468889999999999999999999999             2    7788


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCC
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      ..|+.++|.+.+++..+..|.+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HcccHHHHHHHHHHHHHhCCCcc
Confidence            89999999999999998777665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.99  E-value=8.1e-05  Score=49.78  Aligned_cols=92  Identities=11%  Similarity=-0.011  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc----CHHHHHHH------------HHHHHhcCChhHHHHHH---
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP----IMEHYGCV------------VDLLGRAGLLSEANEFL---   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~f---   73 (112)
                      +...|..+-..+.+.|++++|...+++...   ..|    +...+..+            ...+.+.|++++|.+.+   
T Consensus        70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  146 (359)
T 3ieg_A           70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI  146 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            445555555556666666666666665543   122    22223222            34555566666666655   


Q ss_pred             ----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 ----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 ----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                                |    ..+...|++++|...+++..+..|.++..+..+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  194 (359)
T 3ieg_A          147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI  194 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                      1    444555555566655555555555544444333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.96  E-value=5.9e-05  Score=50.81  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=64.4

Q ss_pred             CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HH-HHHHHHHHHHhcCChhHHHHHH-------------
Q 033770           10 LRAN-EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-ME-HYGCVVDLLGRAGLLSEANEFL-------------   73 (112)
Q Consensus        10 ~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~f-------------   73 (112)
                      +.|+ ...|..+...+.+.|++++|..+|++..+   +.|+ .. .|..+...+.+.|++++|.++|             
T Consensus        94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  170 (308)
T 2ond_A           94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence            3554 44778888888888888888888888764   3453 33 6888888888888888888887             


Q ss_pred             H--HHHH---hhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           74 W--SACK---IHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        74 ~--~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      |  .+..   ..|+.+.|..+|+...+..|+++..+.
T Consensus       171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  207 (308)
T 2ond_A          171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL  207 (308)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            2  2222   247777888888777776676655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.91  E-value=1.4e-06  Score=62.75  Aligned_cols=79  Identities=13%  Similarity=0.117  Sum_probs=19.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      +|..+|..+++++.+.|++++|...++..++  . .+++.+.+.|+.+|++.|+++++.+++                  
T Consensus        59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark--~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~  135 (449)
T 1b89_A           59 DDPSSYMEVVQAANTSGNWEELVKYLQMARK--K-ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE  135 (449)
T ss_dssp             -----------------------------------------------------CHHHHTTTTTCC---------------
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--h-CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence            4556666666666666666666665554443  1 344555666666666666666665555                  


Q ss_pred             ---------------H----HHHHhhCChhHHHHHHHHH
Q 033770           74 ---------------W----SACKIHGAVKLSHEVGKRL   93 (112)
Q Consensus        74 ---------------~----~~~~~~g~~~~a~~~~~~m   93 (112)
                                     |    .++.+.|+++.|.+.++++
T Consensus       136 g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          136 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence                           3    6666677777777777665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.91  E-value=0.00019  Score=45.04  Aligned_cols=94  Identities=9%  Similarity=-0.022  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--------------HHHHHHHHHHHHhcCChhHHHHHH-------
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPI--------------MEHYGCVVDLLGRAGLLSEANEFL-------   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~f-------   73 (112)
                      ..+..+=..+.+.|++++|...+.+......-.|+              ...|.-+-..|.+.|++++|.+.+       
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34555666778899999999999998751111121              267888888999999999999998       


Q ss_pred             ------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           74 ------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        74 ------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                            |    .++...|+.++|...|++..+..|.++.....+.
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence                  2    7788899999999999999999998776555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.91  E-value=0.00014  Score=48.22  Aligned_cols=93  Identities=9%  Similarity=-0.159  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+.+.|++++|..+++++.+ . .+.+...+..+...|.+.|++++|.+.|             |    .
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ-A-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            444566777888899999999999999985 2 2337888899999999999999999999             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .+...|+.++|.+.+++..+..|.....+..+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            78889999999999999998888776655443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.91  E-value=0.00013  Score=53.02  Aligned_cols=89  Identities=17%  Similarity=0.019  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      ...|..+-..+.+.|++++|...+++..+   ..| +...+..+-..|.+.|++++|.+.+             |    .
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   99 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH   99 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45555666666666666666666666553   123 4556666666666666666666666             1    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      .+...|+.++|.+.+++..+..|+++..+.
T Consensus       100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  129 (568)
T 2vsy_A          100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITA  129 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            555566666666666666665665544333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.90  E-value=2.6e-05  Score=50.56  Aligned_cols=84  Identities=15%  Similarity=0.170  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEF-----EVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------   73 (112)
                      +..++..+-..+...|++++|...+++.....     +-.| ...++..+-..|.+.|++++|.+.|             
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            46778889999999999999999999987521     2233 5678889999999999999999998             


Q ss_pred             --------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 --------W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 --------~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                              |    ..+...|++++|...+++..+.
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                    1    6778889999999999999864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.90  E-value=0.00035  Score=43.89  Aligned_cols=90  Identities=9%  Similarity=-0.114  Sum_probs=77.4

Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770            9 GLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus         9 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      -+.|+...|..+-..+.+.|++++|...+++... .. +.+...|..+-..|.+.|++++|.+.|               
T Consensus        32 a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  109 (213)
T 1hh8_A           32 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY  109 (213)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred             HcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence            3578889999999999999999999999999885 32 346788899999999999999999887               


Q ss_pred             --------------H----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           74 --------------W----SACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        74 --------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                                    |    ..+...|+.++|.+.+++..+..|.+
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                          1    56778899999999999999887754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.88  E-value=6e-05  Score=50.43  Aligned_cols=92  Identities=14%  Similarity=0.004  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      |...+..+-..+.+.|++++|...|++... . -+.+...+..+-..|.+.|++++|.+.|             |    .
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            455677788889999999999999999985 2 2236788999999999999999999999             2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCC---CCCcchhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQP---EHCRRYVV  106 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~  106 (112)
                      .+...|+.++|...+++..+..|   .++..+..
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence            88889999999999999998888   55554433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.88  E-value=5.8e-05  Score=54.41  Aligned_cols=100  Identities=12%  Similarity=0.041  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc----------C----------CCcCHHHHHHHHHHHHhcCChhHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEF----------E----------VVPIMEHYGCVVDLLGRAGLLSEAN   70 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~----------g----------~~p~~~~~~~li~~~~~~g~~~~A~   70 (112)
                      .||..+|+.+-..|...|.+++|...|..+.. .          |          -..++.+|..++.+|...|+++.|.
T Consensus       119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n-~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~  197 (449)
T 1b89_A          119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ  197 (449)
T ss_dssp             CC----------------CTTTHHHHHHHTTC-HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhh-HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHH
Confidence            35556666666666666666666666654421 0          0          0013455555555555555555554


Q ss_pred             HHH----------H---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           71 EFL----------W---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        71 ~~f----------~---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      ...          .   ..|.+.|.+++|..+++...++++.....++-|..+|
T Consensus       198 ~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~  251 (449)
T 1b89_A          198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  251 (449)
T ss_dssp             HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            433          0   3566777888888888877776666655555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.87  E-value=8.3e-05  Score=52.30  Aligned_cols=92  Identities=10%  Similarity=0.020  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHhccCc-HHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           13 NEVTFVAVLTACARARL-VELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      +...|+.+=..+.+.|+ +++|+..+++...   +.| +...|+-+-..|.+.|++++|.+.|             |   
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l  206 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  206 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence            34555555556666664 6666666666653   123 4556666666666666666666666             3   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                       ..+...|++++|...++++.+.+|.+...+..+
T Consensus       207 g~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence             455566677777777777766666665554433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.87  E-value=0.00016  Score=42.39  Aligned_cols=82  Identities=10%  Similarity=-0.115  Sum_probs=65.2

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHH
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACK   78 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~   78 (112)
                      +-.+-..+.+.|++++|...+++..+   ..| +...|..+=..+.+.|++++|.+.|             |    ..+.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44455677889999999999999885   234 7788888889999999999999999             2    7788


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCC
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      ..|+.++|...+++..+..|...
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCC
Confidence            89999999999999998888643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.84  E-value=8.5e-05  Score=52.73  Aligned_cols=84  Identities=13%  Similarity=0.009  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..+|..+-..+.+.|++++|...+++..+ .. +.+...|..+...|.+.|++++|.+.|             |    .
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  386 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQS-LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE  386 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            345555555556666666666666665553 11 113445555555666666666666655             1    4


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                      .+...|+.++|.+.+++..+..|
T Consensus       387 ~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          387 ILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHcCC
Confidence            44455555555555555544333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.84  E-value=5.5e-05  Score=54.25  Aligned_cols=91  Identities=7%  Similarity=-0.080  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc---------CChhHHHHHH-----------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA---------GLLSEANEFL-----------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~f-----------   73 (112)
                      ...|..+=..+.+.|++++|...|++..+   ..|+...+..+-..|.+.         |++++|.+.|           
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            45555556666666666666666666543   235555555666666666         6666666665           


Q ss_pred             --H----HHHHhh--------CChhHHHHHHHHHHhcCC---CCCcchhhh
Q 033770           74 --W----SACKIH--------GAVKLSHEVGKRLLELQP---EHCRRYVVL  107 (112)
Q Consensus        74 --~----~~~~~~--------g~~~~a~~~~~~m~~~~~---~~~~~~~~l  107 (112)
                        |    ..+...        |+.++|...|++..+..|   .++..+..+
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l  264 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR  264 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence              2    444444        556666666666666555   444444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.83  E-value=2e-05  Score=45.74  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=44.0

Q ss_pred             cCcHHHHHHHHHHhhhccCC-Cc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHH
Q 033770           27 ARLVELGLELFHSLLGEFEV-VP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSH   87 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~   87 (112)
                      .|++++|...|++... .+. .| +...+..+-..|.+.|++++|.+.|             |    .++...|+.++|.
T Consensus         3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            4566666666666653 221 12 4455566666667777777777766             1    5666677777777


Q ss_pred             HHHHHHHhcCCCCCc
Q 033770           88 EVGKRLLELQPEHCR  102 (112)
Q Consensus        88 ~~~~~m~~~~~~~~~  102 (112)
                      ..+++..+..|+++.
T Consensus        82 ~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           82 ELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHhCCCcHH
Confidence            777777666665543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.82  E-value=0.00031  Score=40.58  Aligned_cols=81  Identities=11%  Similarity=-0.019  Sum_probs=65.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhhccCCCcC-H---HHHHHHHHHHHhcCChhHHHHHH----------------H----H
Q 033770           20 VLTACARARLVELGLELFHSLLGEFEVVPI-M---EHYGCVVDLLGRAGLLSEANEFL----------------W----S   75 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~f----------------~----~   75 (112)
                      +-..+.+.|++++|...|++.... .  |+ .   ..+..+-..|.+.|++++|.+.|                |    .
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~-~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLEL-Y--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-C--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHH-C--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            345667889999999999998752 2  32 2   46777888899999999999998                1    6


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      .+...|+.++|...+++..+..|+++..
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~  112 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAA  112 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence            7788899999999999999888876543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.80  E-value=0.00068  Score=39.92  Aligned_cols=82  Identities=12%  Similarity=0.092  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------------
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------------   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------------   73 (112)
                      .++..+=..+.+.|++++|+..|++... .  .| +...|+-+=..|.+.|++++|.+.|                    
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~-~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE-L--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            3455566778899999999999999875 2  34 6788888999999999999999998                    


Q ss_pred             H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           74 W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        74 ~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      |    ..+...|++++|.+.|++..+..|+
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            1    5567789999999999998876664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.75  E-value=0.00028  Score=47.16  Aligned_cols=86  Identities=8%  Similarity=-0.129  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      +...+..+-..+.+.|++++|...+++... .  .| +...|..+-..|.+.|++++|.+.+             |    
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT-R--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456677777888899999999999999875 2  34 7788888999999999999999998             2    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      .++...|+.++|...+++..+..|+++
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            778889999999999999988777654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.75  E-value=0.00014  Score=51.15  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCC-hhHHHHHH-------------H----
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGL-LSEANEFL-------------W----   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~-~~~A~~~f-------------~----   74 (112)
                      ...|+.+-..+.+.|++++|+..+++...   +.| +...|+.+-..|.+.|+ +++|.+.|             |    
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            45677777888899999999999999885   345 67888999999999997 99999999             4    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+...|++++|...+++..+++|.+...+..+.
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg  207 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ  207 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence            7788899999999999999999999877665443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.71  E-value=0.00044  Score=49.43  Aligned_cols=94  Identities=9%  Similarity=0.045  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----------------HHHHHHHHHHHHhcCChhHHHHHH----
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----------------MEHYGCVVDLLGRAGLLSEANEFL----   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~f----   73 (112)
                      ...|..+=..+.+.|++++|...|++..+ .  .|+                ...|.-+-.+|.+.|++++|.+.|    
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS-W--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34566777788899999999999999875 2  232                578888999999999999999999    


Q ss_pred             ---------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           74 ---------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        74 ---------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                               |    .++...|++++|...|++..++.|.+...+..+..+
T Consensus       345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                     2    888899999999999999999999888766655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.71  E-value=0.00016  Score=51.78  Aligned_cols=98  Identities=10%  Similarity=-0.069  Sum_probs=82.2

Q ss_pred             CCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhc--------CChhHHHH
Q 033770            9 GLRANEVTFVAVLTACARA---------RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRA--------GLLSEANE   71 (112)
Q Consensus         9 g~~p~~~t~~~li~~~~~~---------~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~~   71 (112)
                      .+.|+...+..+-..+.+.         |++++|...+++..+ .. +-+...|..+-..|.+.        |++++|.+
T Consensus       165 ~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          165 THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            4568888888999999999         999999999999885 22 23688889999999998        99999999


Q ss_pred             HH----------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           72 FL----------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        72 ~f----------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      .|                |    ..+...|+.++|.+.|++..+..|+++..+..+.
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~  299 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ  299 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            98                2    7788899999999999999999998876554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.70  E-value=0.00075  Score=49.04  Aligned_cols=93  Identities=8%  Similarity=-0.115  Sum_probs=79.0

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +...+..+-..+.+.|++++|...+++..+ .. .-+...+..+-..|.+.|++++|.+.+             |    .
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASD-AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567888888999999999999999999875 22 236788899999999999999999999             2    6


Q ss_pred             HHHhh---CChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           76 ACKIH---GAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        76 ~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .+...   |+.++|.+.+++..+.+|.....+.++
T Consensus       134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          134 WRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence            67777   999999999999999899877766554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.67  E-value=0.00055  Score=45.81  Aligned_cols=57  Identities=12%  Similarity=-0.071  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .-.+..+-..+.+.|++++|...+++...   ..| +...+..+-..|.+.|++++|.+.+
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l  174 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVL  174 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            34444555566677888888888877764   123 5566777777788888888887776

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.66  E-value=0.00014  Score=47.88  Aligned_cols=85  Identities=15%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEF-----EVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------   73 (112)
                      ....++..+-..+...|++++|...+++.....     +-.| ....+..+...|.+.|++++|.+.|            
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  146 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence            345678888899999999999999999987521     2223 5677889999999999999999998            


Q ss_pred             ---------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 ---------W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ---------~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                               |    ..+...|++++|.+.+++..+.
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                     1    6777889999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.61  E-value=0.0002  Score=43.98  Aligned_cols=66  Identities=11%  Similarity=0.096  Sum_probs=55.4

Q ss_pred             CCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhh
Q 033770           45 EVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        45 g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      .+.| +...+..+=..+.+.|++++|.+.|             |    .++...|++++|...|++..+++|+++..+.-
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            4556 5566777888899999999999999             4    78889999999999999999999999887765


Q ss_pred             hhcc
Q 033770          107 LSNV  110 (112)
Q Consensus       107 l~~~  110 (112)
                      +...
T Consensus       110 lg~~  113 (151)
T 3gyz_A          110 TGQC  113 (151)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.59  E-value=0.00035  Score=42.41  Aligned_cols=86  Identities=16%  Similarity=0.025  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhcc-------CC---------Cc-CHHHHHHHHHHHHhcCChhHHHHHH----
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEF-------EV---------VP-IMEHYGCVVDLLGRAGLLSEANEFL----   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~---------~p-~~~~~~~li~~~~~~g~~~~A~~~f----   73 (112)
                      ..+...=..+.+.|++++|...|.+... .       .-         .| +...|.-+-.+|.+.|++++|.+.+    
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALT-RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3455556677889999999999998775 2       00         22 3467788888999999999999998    


Q ss_pred             ---------H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           74 ---------W----SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        74 ---------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                               |    .++...|++++|...+++..++.|.++
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence                     2    788899999999999999999999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.56  E-value=0.0015  Score=42.53  Aligned_cols=92  Identities=7%  Similarity=-0.109  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH----------------H-
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------W-   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------~-   74 (112)
                      +...+-.+-..+.+.|++++|...|++......-.|. ...+..+-..|.+.|++++|.+.|                | 
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            4455556666778899999999999999862211111 567788888999999999999999                1 


Q ss_pred             ---HHHHh--------hCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 ---SACKI--------HGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ---~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                         .++..        .|+.++|...|++..+..|+++...
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence               55556        8999999999999999889876544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.50  E-value=0.00068  Score=48.80  Aligned_cols=82  Identities=11%  Similarity=0.074  Sum_probs=65.2

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChh
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVK   84 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~   84 (112)
                      .+.+.|++++|...+++..+ .  .| +...|..+-..|.+.|++++|.+.+             |    .++...|+.+
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~-~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIE-L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH-h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            34577889999999988875 2  34 5778888888899999999999888             2    7778889999


Q ss_pred             HHHHHHHHHHhcCCCCCcchhhh
Q 033770           85 LSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        85 ~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      +|.+.+++..+..|.++..+..+
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l  114 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKY  114 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999888888776655444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.49  E-value=0.00058  Score=44.78  Aligned_cols=84  Identities=17%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc-------CCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEF-------EVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------   73 (112)
                      .+..++..+-..+...|++++|..++++... .       .-......+..+-..|...|++++|.+.+           
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            3567788899999999999999999999875 2       23335677889999999999999999998           


Q ss_pred             ----------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 ----------W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ----------~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                                |    ..+...|+.++|.+.+++..+.
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                      1    6778889999999999998864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.47  E-value=0.00012  Score=45.07  Aligned_cols=85  Identities=9%  Similarity=0.022  Sum_probs=63.8

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH-HHhhCCh--
Q 033770           24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA-CKIHGAV--   83 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~-~~~~g~~--   83 (112)
                      +...|++++|...+++... . -+.+...|..+-..|.+.|++++|.+.|             |    .. +...|+.  
T Consensus        20 ~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIR-A-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHH-H-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3467888899999988775 2 2237788999999999999999999999             2    44 5578898  


Q ss_pred             hHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           84 KLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        84 ~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ++|...+++..+..|.++..+..+..+
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~  124 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999999887766555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.46  E-value=0.002  Score=43.22  Aligned_cols=91  Identities=8%  Similarity=0.041  Sum_probs=71.7

Q ss_pred             CCHHHHHHHHHHHh-------ccCcH-------HHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---
Q 033770           12 ANEVTFVAVLTACA-------RARLV-------ELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---   73 (112)
Q Consensus        12 p~~~t~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---   73 (112)
                      -+...|..+...+.       +.|++       ++|..+|++..+  .+.| +...|..+...+.+.|++++|.++|   
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            35556666666654       34775       899999999874  3556 5668999999999999999999998   


Q ss_pred             -----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           74 -----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        74 -----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                                 |    ..+.+.|+.++|..+|++..+..|.....+
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  171 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence                       4    566778999999999999998888665444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.46  E-value=0.00063  Score=48.97  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-H-HHHHHHHHHHHhcCChhHHHHHH-------------H--H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-M-EHYGCVVDLLGRAGLLSEANEFL-------------W--S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~f-------------~--~   75 (112)
                      +...|..+...+.+.|++++|..++++...   +.|+ . ..|......+.+.|++++|.++|             |  .
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            466777777777777888888888877764   2343 2 46777777777777777777777             1  1


Q ss_pred             H---HHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           76 A---CKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        76 ~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      +   +...|+.++|..+|+...+..|+++..+.
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~  429 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL  429 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence            1   22467777777777777666666554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.42  E-value=0.0012  Score=49.51  Aligned_cols=85  Identities=14%  Similarity=-0.012  Sum_probs=62.4

Q ss_pred             hccCcHHHHHHHHHHhhh-----ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhC
Q 033770           25 ARARLVELGLELFHSLLG-----EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHG   81 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~-----~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g   81 (112)
                      ...|+.++|...+++...     .....| +...+..+-..|.+.|++++|.+.|             |    ..+...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            677888888888888761     002223 5667777888888888888888888             2    6677888


Q ss_pred             ChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           82 AVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        82 ~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      ++++|.+.|++..+.+|+++..+..+..
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~  509 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAA  509 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            8888888888888888887776655543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.40  E-value=0.00068  Score=46.56  Aligned_cols=92  Identities=9%  Similarity=-0.081  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHH------------------HHHHHHHHHHhcCChhHHHHHH---
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIME------------------HYGCVVDLLGRAGLLSEANEFL---   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~------------------~~~~li~~~~~~g~~~~A~~~f---   73 (112)
                      ..+..+=..+.+.|++++|...|++...   +.|+..                  .|.-+-..|.+.|++++|.+.+   
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455566677788999999999988764   234433                  6777888889999999999988   


Q ss_pred             ----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           74 ----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        74 ----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                                |    .++...|++++|...|++..++.|.++..+..|..
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence                      2    77888899999999999988888877665555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.39  E-value=0.00088  Score=46.74  Aligned_cols=93  Identities=10%  Similarity=-0.003  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhcc-------------CCCc-CHHHHHHHHHHHHhcCChhHHHHHH--------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEF-------------EVVP-IMEHYGCVVDLLGRAGLLSEANEFL--------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------   73 (112)
                      .+..+=..+.+.|++++|...+++..+..             ...| +...|.-+-..|.+.|++++|.+.+        
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            45666677889999999999998877400             0233 5677888889999999999999999        


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                           |    .++...|+.++|.+.+++..++.|.++.....+.
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                 2    7888999999999999999999998766555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.38  E-value=0.0031  Score=37.53  Aligned_cols=82  Identities=10%  Similarity=-0.083  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      .+..++..+-..+.+.|++++|...+++... . -+.+...|..+-..|.+.|++++|.+.|             |    
T Consensus        45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  122 (166)
T 1a17_A           45 SNAIYYGNRSLAYLRTECYGYALGDATRAIE-L-DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  122 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3677888888899999999999999999885 2 2346788889999999999999999999             2    


Q ss_pred             --HHHHhhCChhHHHHHHHHHHh
Q 033770           75 --SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~   95 (112)
                        ..+...|+.++|.+.+.....
T Consensus       123 ~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          123 ECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccchHH
Confidence              335667899999999988764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.37  E-value=0.0023  Score=46.01  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=65.3

Q ss_pred             CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH--HHHHHHHhcCChhHHHHHH------------
Q 033770           10 LRANE--VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG--CVVDLLGRAGLLSEANEFL------------   73 (112)
Q Consensus        10 ~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~f------------   73 (112)
                      +.|+.  ..|........+.|++++|..+|++..+. . ..+...|-  +++. +...|+.++|.++|            
T Consensus       350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~-~~~~~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~~p~~~~  426 (530)
T 2ooe_A          350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTAALME-YYCSKDKSVAFKIFELGLKKYGDIPE  426 (530)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-T-TCCTHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-c-CCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHCCCCHH
Confidence            45653  47888888888999999999999998752 1 11233332  2332 34689999999998            


Q ss_pred             -H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 -W----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 -~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                       |    ....+.|+.++|..+|+......|.++.
T Consensus       427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence             4    5556789999999999999886665543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.37  E-value=0.0025  Score=40.98  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhcc------CC-CcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEF------EV-VPIMEHYGCVVDLLGRAGLLSEANEFL------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~f------------   73 (112)
                      ...++..+-..+...|++++|...+++... .      .- ......+..+-..|.+.|++++|.+.|            
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            456788899999999999999999999875 2      11 235677889999999999999999998            


Q ss_pred             ---------H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 ---------W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ---------~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                               |    ..+...|+.++|...+++..+.
T Consensus       163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                     1    7788899999999999999864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.34  E-value=0.00067  Score=41.05  Aligned_cols=65  Identities=9%  Similarity=0.032  Sum_probs=54.0

Q ss_pred             CCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           46 VVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        46 ~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      +.| +...+..+-..+.+.|++++|.+.|             |    .++...|++++|...+++..+..|+++..+..+
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            345 5666777888899999999999999             3    778899999999999999999999988776655


Q ss_pred             hcc
Q 033770          108 SNV  110 (112)
Q Consensus       108 ~~~  110 (112)
                      ..+
T Consensus        96 g~~   98 (148)
T 2vgx_A           96 AEC   98 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.31  E-value=0.0018  Score=36.44  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +.+..++..+...+.+.|++++|..+++++.. . .+.+..++..+...|.+.|++++|.+.|
T Consensus        40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~  100 (125)
T 1na0_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAEAWYNLGNAYYKQGDYDEAIEYY  100 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34677888999999999999999999999885 3 2347788999999999999999999997

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.30  E-value=0.0049  Score=39.39  Aligned_cols=89  Identities=8%  Similarity=-0.062  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHH----------------H----
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFL----------------W----   74 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f----------------~----   74 (112)
                      .+-.+-..+.+.|++++|...|+++.....-.|. ...+..+-..|.+.|++++|.+.|                |    
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            3444556678889999999999999863222222 356777889999999999999999                1    


Q ss_pred             HHHH------------------hhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           75 SACK------------------IHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        75 ~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      .++.                  ..|+.++|...|+++.+..|+++...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            2222                  24689999999999999889876543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.27  E-value=0.00091  Score=36.09  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEF   72 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~   72 (112)
                      +...+..+-..+.+.|++++|...+++... .. +.+...+..+-..|.+.|++++|.+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~   65 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGNAYYKQGDYDEAIEY   65 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            345666677778888899999988888775 22 12444444444445444444444444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.25  E-value=0.0022  Score=44.90  Aligned_cols=96  Identities=13%  Similarity=-0.028  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC--CCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLG----EFE--VVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g--~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------   73 (112)
                      .-...||.|=..+...|+.++|++.|++...    ..+  ..| ...+|+-+-..|.+.|++++|.+.+           
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            3456788887888889999999999987542    011  123 4678888999999999999999887           


Q ss_pred             ----------H----HHHHh--hCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 ----------W----SACKI--HGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 ----------~----~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                                +    .++..  .++.++|.+.|++..+.+|+++..+..+
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~  178 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL  178 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                      1    12222  2468999999999999999887655433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.25  E-value=0.001  Score=39.58  Aligned_cols=65  Identities=9%  Similarity=-0.026  Sum_probs=52.8

Q ss_pred             CCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           46 VVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        46 ~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      ..| +...+..+-..+.+.|++++|.+.|             |    ..+...|+.++|...++...+.+|+++..+..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            344 4455666777889999999999999             3    778899999999999999999999988876655


Q ss_pred             hcc
Q 033770          108 SNV  110 (112)
Q Consensus       108 ~~~  110 (112)
                      ..+
T Consensus        93 g~~   95 (142)
T 2xcb_A           93 AEC   95 (142)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.21  E-value=0.00076  Score=50.51  Aligned_cols=92  Identities=10%  Similarity=-0.078  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      +...+..+-.++.+.|++++|...+++..+ .  .| +...|..+=..|.+.|++++|.+.|             |    
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAE-R--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhc-c--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            456677777788888999999999888875 1  24 6677777888888889999998888             2    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+.+.|+.++ .+.+++..+.+|+++..+..+.
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            66677788888 8888888777777766555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.19  E-value=0.01  Score=38.60  Aligned_cols=15  Identities=7%  Similarity=-0.172  Sum_probs=6.1

Q ss_pred             hCChhHHHHHHHHHH
Q 033770           80 HGAVKLSHEVGKRLL   94 (112)
Q Consensus        80 ~g~~~~a~~~~~~m~   94 (112)
                      .++.++|...+++..
T Consensus       199 ~~~~~~A~~~~~~a~  213 (273)
T 1ouv_A          199 TKNFKEALARYSKAC  213 (273)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH
Confidence            334444444444333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.12  E-value=0.0051  Score=40.30  Aligned_cols=82  Identities=11%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      ++..+-..+...|++++|...+++....   .+-.+ ...++..+-..|.+.|++++|.+.+                  
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  304 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  304 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            5566666667777777777777665431   11111 1445566666777777777777766                  


Q ss_pred             -H----HHHHhhCChhHHHHHHHHHHhcC
Q 033770           74 -W----SACKIHGAVKLSHEVGKRLLELQ   97 (112)
Q Consensus        74 -~----~~~~~~g~~~~a~~~~~~m~~~~   97 (112)
                       |    ..+...|+.++|...+++..+..
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence             1    55666677777777777766543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.10  E-value=0.0021  Score=37.37  Aligned_cols=63  Identities=14%  Similarity=0.050  Sum_probs=53.5

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           48 PIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        48 p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      .+...+..+-..+.+.|++++|.+.|             |    ..+...|++++|...+++..+..|.++..+..+..+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            46788889999999999999999999             3    777889999999999999999999887766655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.08  E-value=0.0067  Score=38.37  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=43.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           20 VLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        20 li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +=..+.+.|++++|...+++..+ .  .| +...+..+-..|.+.|++++|.+.|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~  111 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQ-K--APNNVDCLEACAEMQVCRGQEKDALRMY  111 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            67778889999999999998875 2  34 6788888999999999999999998

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.07  E-value=0.0037  Score=44.66  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=68.4

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhc--cCCCc----CHHHHHHHHHHHHhcCChhHHHHHH-------------------
Q 033770           19 AVLTACARARLVELGLELFHSLLGE--FEVVP----IMEHYGCVVDLLGRAGLLSEANEFL-------------------   73 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~--~g~~p----~~~~~~~li~~~~~~g~~~~A~~~f-------------------   73 (112)
                      ..+..+.+.|++++|+.++++....  .-+.|    ...+++.|...|...|++++|++++                   
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            3455666789999999999887631  11222    3457889999999999999999998                   


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHh-----cCCCCCcchhhh
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLE-----LQPEHCRRYVVL  107 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~l  107 (112)
                        +    ..|...|+.++|+.++++..+     .+|++|.+-.++
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence              1    778889999999999998874     678777655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.07  E-value=0.016  Score=37.63  Aligned_cols=54  Identities=4%  Similarity=-0.008  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhc----cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770           16 TFVAVLTACAR----ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f   73 (112)
                      ++..+=..+.+    .++.++|...|++... .+   +...+..+-..|.+    .|++++|.+.|
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  101 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYY  101 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence            34444444444    5555555555555543 33   34444445555555    55555555555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.03  E-value=0.0019  Score=36.99  Aligned_cols=64  Identities=9%  Similarity=0.028  Sum_probs=53.3

Q ss_pred             CCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           46 VVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        46 ~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ...+...+..+-..+.+.|++++|.+.|             |    ..+...|+.++|...+++..+..|.++..+..+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            3457788889999999999999999999             2    6778889999999999999998888766655544


Q ss_pred             c
Q 033770          109 N  109 (112)
Q Consensus       109 ~  109 (112)
                      .
T Consensus        92 ~   92 (133)
T 2lni_A           92 A   92 (133)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.02  E-value=0.018  Score=39.56  Aligned_cols=87  Identities=11%  Similarity=-0.029  Sum_probs=61.4

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCC-cCHHHHHHHHHHHHhcCChhHHHHHH-----------H----
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVV-PIMEHYGCVVDLLGRAGLLSEANEFL-----------W----   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~f-----------~----   74 (112)
                      .++..++..+-.++...|++++|++++.+-.. .|-. -+...+-.++..|.+.|+.+.|.+.+           |    
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~  175 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE  175 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH
Confidence            45666666777888888888888888887653 3321 26677778888888888888888888           3    


Q ss_pred             ------HH--HHhhC--ChhHHHHHHHHHHhcCC
Q 033770           75 ------SA--CKIHG--AVKLSHEVGKRLLELQP   98 (112)
Q Consensus        75 ------~~--~~~~g--~~~~a~~~~~~m~~~~~   98 (112)
                            .+  ....|  +...|..+|+++.+..|
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence                  22  12223  78888888888766444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.02  E-value=0.0016  Score=39.46  Aligned_cols=62  Identities=11%  Similarity=0.040  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      +...+..+-..|.+.|++++|.+.|             |    ..+...|++++|...+++..+..|.++..+..+..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5677888888999999999999999             3    778899999999999999999999887766655443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.01  E-value=0.011  Score=39.35  Aligned_cols=89  Identities=7%  Similarity=-0.016  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhc-CChhHHHHHH---------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRA-GLLSEANEFL---------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~-g~~~~A~~~f---------------   73 (112)
                      ..+|+.+-..|.+.|++++|...+++...-   .|-.+ -..+++-+-..|.+. |++++|.+.|               
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            568888999999999999999999887641   11111 145778888899996 9999999988               


Q ss_pred             ----H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                          |    ..+.+.|+.++|...+++..+..|.+..
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence                1    5677889999999999999988776544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.00  E-value=0.0023  Score=35.64  Aligned_cols=61  Identities=15%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      +...+..+...+.+.|++++|.+.|             |    ..+...|+.++|...+++..+..|.++..+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4567788888999999999999999             2    67788999999999999999988887665554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.0024  Score=35.59  Aligned_cols=60  Identities=10%  Similarity=-0.031  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ++...+..+=..+.+.|++++|...+++... . -+.+...|..+-..|.+.|++++|.+.|
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~   61 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT-A-QPQNPVGYSNKAMALIKLGEYTQAIQMC   61 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4566777788888999999999999999875 2 2236667777777788888888887776

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.98  E-value=0.023  Score=36.73  Aligned_cols=89  Identities=7%  Similarity=-0.068  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHh--------cCChhHHHHHH-----------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGR--------AGLLSEANEFL-----------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~--------~g~~~~A~~~f-----------   73 (112)
                      ...+..+-.++.+.|++++|...|++..+...-.|+ ...+..+-..|.+        .|++++|.+.|           
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            566777888899999999999999999863221222 4456667777888        99999999998           


Q ss_pred             --H---------------------HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 --W---------------------SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 --~---------------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                        +                     ..+...|+.+.|...+++..+..|+++.
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence              0                     3466789999999999999988887543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.97  E-value=0.014  Score=34.00  Aligned_cols=81  Identities=11%  Similarity=0.027  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------   73 (112)
                      .++..+-..+...|++++|...+++....   .+-.+ ....+..+-..|...|++++|.+.+                 
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            35666777777788888888877776531   11111 1445666677777888888888777                 


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                        +    ..+...|+.++|.+.+++..+
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              1    556677788888877777664

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.97  E-value=0.015  Score=32.37  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHH---HHHHhhCChhHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLW---SACKIHGAVKLSHEV   89 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~g~~~~a~~~   89 (112)
                      |...+..+=..+.+.|++++|...|++..+ .. +-+...|..+-..|.+.|++++|.+.|=   ......++...+.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l   83 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE-TD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL   83 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence            566788888899999999999999999885 32 2256788999999999999999999972   333455666666665


Q ss_pred             HHHHHh
Q 033770           90 GKRLLE   95 (112)
Q Consensus        90 ~~~m~~   95 (112)
                      -..+.+
T Consensus        84 ~~~l~~   89 (100)
T 3ma5_A           84 QDAKLK   89 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.95  E-value=0.0068  Score=37.15  Aligned_cols=85  Identities=15%  Similarity=0.019  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-HHhcCChhHHHHHH-------------H----
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL-LGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~f-------------~----   74 (112)
                      +...+..+-..+.+.|++++|...+++....   .|+...+..+... +.+.++..+|.+.|             |    
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5567778888888999999999999887652   2343333322111 12222333455555             2    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                      ..+...|+.++|...+++..+..|+.
T Consensus       116 ~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          116 VQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCccc
Confidence            77888999999999999999888764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.0026  Score=36.67  Aligned_cols=60  Identities=12%  Similarity=0.001  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           50 MEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        50 ~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      ...|..+-..+.+.|++++|.+.|             |    .++.+.|++++|...+++..+.+|.++..+..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            445666777889999999999999             3    77888999999999999999999988776665543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.93  E-value=0.0059  Score=44.39  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             HhccCcHHHHHHHHHHhhhc----cC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------------H--
Q 033770           24 CARARLVELGLELFHSLLGE----FE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------------W--   74 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~----~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------------~--   74 (112)
                      +...|++++|+.++++....    .| -.| ...+++.|...|...|++++|..++                     +  
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45789999999888776531    22 123 3567889999999999999999998                     1  


Q ss_pred             --HHHHhhCChhHHHHHHHHHHh-----cCCCCCcchhhh
Q 033770           75 --SACKIHGAVKLSHEVGKRLLE-----LQPEHCRRYVVL  107 (112)
Q Consensus        75 --~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~l  107 (112)
                        ..|...|+.++|+.++++..+     ++|++|.+-.++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  438 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE  438 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence              778889999999999998873     678877655443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.91  E-value=0.0052  Score=40.27  Aligned_cols=79  Identities=11%  Similarity=0.060  Sum_probs=62.9

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC-----HHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVPI-----MEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      +...=..+.+.|++++|...+++... .  .|+     ...+..+-..|...|++++|.+.+                  
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHh-h--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            33344566788999999999999886 3  233     467888999999999999999998                  


Q ss_pred             -H----HHHHhhCChhHHHHHHHHHHhcCC
Q 033770           74 -W----SACKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        74 -~----~~~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                       |    ..+...|++++|...+++..+..|
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence             1    677888999999999999876433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.91  E-value=0.0027  Score=37.30  Aligned_cols=60  Identities=7%  Similarity=0.009  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           51 EHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        51 ~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ..+.-.=..|.+.|++++|.+.|             |    .++.+.|++++|...+++..+++|+++..+..+..+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            44555556789999999999999             3    788899999999999999999999887766655443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.89  E-value=0.0089  Score=42.81  Aligned_cols=82  Identities=10%  Similarity=-0.043  Sum_probs=62.7

Q ss_pred             ccCcHHHHHHHHHHhhhc----cC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------------H----
Q 033770           26 RARLVELGLELFHSLLGE----FE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------------W----   74 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~----~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------------~----   74 (112)
                      +.|++++|+.++++....    .| -.| ...+++.|-..|...|++++|..++                     +    
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999988876531    22 123 3467889999999999999999998                     1    


Q ss_pred             HHHHhhCChhHHHHHHHHHHh-----cCCCCCcchhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLE-----LQPEHCRRYVVL  107 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~l  107 (112)
                      ..|...|+.++|+.++++..+     .+|++|.+-.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~  427 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK  427 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            778889999999999998874     678777655443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.86  E-value=0.003  Score=36.75  Aligned_cols=59  Identities=14%  Similarity=-0.049  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           52 HYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        52 ~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      .+-.+-..+.+.|++++|.+.|             |    ..+...|+.++|...+++..+.+|+++..+..+..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~   94 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   94 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3445566788999999999999             3    788889999999999999999999987766655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.85  E-value=0.012  Score=36.22  Aligned_cols=83  Identities=11%  Similarity=-0.068  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc--CHHHHHHHHHHHHhcCChhHHHHHH--------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP--IMEHYGCVVDLLGRAGLLSEANEFL--------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f--------------   73 (112)
                      ...++..+=..+...|++++|...+++....   .|-.|  ....+..+-..|.+.|++++|.+.+              
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  144 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV  144 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence            3456777777888999999999999887641   22112  2445778888899999999999998              


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                           +    ..+...|+.++|.+.+++..+
T Consensus       145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                 1    667788999999999988875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.84  E-value=0.012  Score=32.28  Aligned_cols=60  Identities=12%  Similarity=0.053  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhc-CChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRA-GLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g~~~~A~~~f   73 (112)
                      .+...+..+-..+.+.|++++|...+++..+ . ...  +...+..+-..|.+. |++++|.+.|
T Consensus        38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           38 EESKYWLMKGKALYNLERYEEAVDCYNYVIN-V-IEDEYNKDVWAAKADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h-CcccchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4667788888899999999999999999885 2 223  578899999999999 9999999886

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.84  E-value=0.011  Score=34.48  Aligned_cols=83  Identities=8%  Similarity=-0.067  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..++..+-..+...|++++|...+++......-.++    ...+..+-..|...|++++|.+.+                
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            346677777888999999999999887641100111    247788889999999999999999                


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                         +    ..+...|+.++|.+.+++..+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence               1    6677889999999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.79  E-value=0.0086  Score=40.58  Aligned_cols=85  Identities=12%  Similarity=0.061  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-C----HHHHHHHHHHHHhcCChhHHHHHH------------
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-I----MEHYGCVVDLLGRAGLLSEANEFL------------   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~f------------   73 (112)
                      .+....+...=..+.+.|++++|...+++... .  .| +    ...+..+-..|...|++++|.+.+            
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   82 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD   82 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence            44555666667778899999999999999886 3  23 2    357888889999999999999987            


Q ss_pred             -------H----HHHHhhCChhHHHHHHHHHHhcCC
Q 033770           74 -------W----SACKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        74 -------~----~~~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                             |    ..+...|++++|...+++..+..|
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                   1    677888999999999999886443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.77  E-value=0.018  Score=39.34  Aligned_cols=80  Identities=10%  Similarity=-0.038  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCC-cCHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGE---FEVV-PIMEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~-p~~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      ++..+-..+...|++++|...+++....   .+-. ....++..+-..|.+.|++++|.+.+                  
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  344 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR  344 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence            6667777777888888888887776531   1111 12456677777788888888888777                  


Q ss_pred             -H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 -W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 -~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                       |    ..+...|+.++|.+.+++..+
T Consensus       345 ~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          345 ACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1    666777888888888877764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.011  Score=32.68  Aligned_cols=53  Identities=17%  Similarity=0.085  Sum_probs=45.3

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCC
Q 033770           48 PIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEH  100 (112)
Q Consensus        48 p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~  100 (112)
                      ++...+..+-..+.+.|++++|.+.|             |    ..+...|++++|.+.+++..+..|++
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35667777888899999999999998             2    77888999999999999999888876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.71  E-value=0.018  Score=38.98  Aligned_cols=81  Identities=11%  Similarity=0.006  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------------   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------------   73 (112)
                      .++..+-..+...|++++|...+++....   .+-.+ ...++..+-..|.+.|++++|.+.+                 
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  307 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG  307 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            36777777888888888888888776531   11111 1556777888888888888888887                 


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                        |    ..+...|+.++|.+.+++..+
T Consensus       308 ~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          308 RACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              1    666778888888888888765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.71  E-value=0.012  Score=33.24  Aligned_cols=60  Identities=13%  Similarity=0.086  Sum_probs=50.5

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+...+..+-..+.+.|++++|...+++... .. +.+...|..+-..|.+.|++++|.+.|
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FD-PTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3677888888899999999999999999885 22 236778888999999999999999997

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.70  E-value=0.0086  Score=36.69  Aligned_cols=90  Identities=13%  Similarity=0.060  Sum_probs=67.4

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-----------H---HH---HH
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-----------W---SA---CK   78 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-----------~---~~---~~   78 (112)
                      +..+-..+.+.|++++|...+++...   ..| +...+..+-..|.+.|++++|.+.|           +   .+   +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence            34455677889999999999999774   234 6778889999999999999999998           1   11   12


Q ss_pred             hhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           79 IHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        79 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      ..+....|...+++..+..|+++..+..+..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~  116 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAV  116 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            2234456788999998899988776665544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.69  E-value=0.0082  Score=34.29  Aligned_cols=59  Identities=7%  Similarity=-0.105  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +...+..+-..+.+.|++++|...|++..+ .. +-+...+..+-..|.+.|++++|.+.|
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~   84 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVK-QF-PNHQALRVFYAMVLYNLGRYEQGVELL   84 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            456778888899999999999999999885 22 226778888999999999999999997

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.68  E-value=0.026  Score=37.38  Aligned_cols=82  Identities=11%  Similarity=-0.007  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLG---EFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      ..+|+.+=..|...|++++|...+++...   ..+-.+  +..+++-+-..|.+.|++++|.+.+               
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34788888889999999999999988762   122112  2257888888999999999999998               


Q ss_pred             ----H----HHHHhhCChhHH-HHHHHHHHh
Q 033770           74 ----W----SACKIHGAVKLS-HEVGKRLLE   95 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a-~~~~~~m~~   95 (112)
                          |    ..+.+.|+.++| ...+++...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                1    566778889998 776776653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.68  E-value=0.019  Score=35.77  Aligned_cols=85  Identities=12%  Similarity=-0.044  Sum_probs=64.8

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC--------H-----HHHHHHHHHHHhcCChhHHHHHH----------
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVVPI--------M-----EHYGCVVDLLGRAGLLSEANEFL----------   73 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~f----------   73 (112)
                      +...=..+.+.|++++|...+++..+ .  .|+        .     ..|+-+=.++.+.|++++|.+.+          
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~-l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAME-I--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH-H--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh-h--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            34444566788999999999998875 2  233        2     27888888899999988888776          


Q ss_pred             ----------H--------HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           74 ----------W--------SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        74 ----------~--------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                                |        .++...|+.++|...|++..++.|.+....
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence                      3        566777999999999999999888765543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.68  E-value=0.0051  Score=42.16  Aligned_cols=83  Identities=10%  Similarity=-0.059  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..++..+-..+...|++++|...+++......-.++    ...+..+-..|.+.|++++|.+.|                
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  302 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE  302 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            347777888899999999999999987641100112    237888999999999999999998                


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                         |    ..+...|+.++|...+++..+.
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               1    6778899999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.67  E-value=0.016  Score=38.34  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=62.0

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhhccCCC-cC----HHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           17 FVAVLTACARARLVELGLELFHSLLGEFEVV-PI----MEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      +..+-..+...+++++|...+++... .... +|    ..+++.+-..|.+.|++++|.+.|                  
T Consensus       118 ~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          118 QYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            33466666777899999999999875 2222 23    336888989999999999999988                  


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHhcC
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLELQ   97 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~~~   97 (112)
                        |    ..|.+.|+.++|...+++..+..
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence              1    77788899999999999887643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.65  E-value=0.011  Score=40.53  Aligned_cols=21  Identities=10%  Similarity=-0.028  Sum_probs=10.4

Q ss_pred             HHHHhhCChhHHHHHHHHHHh
Q 033770           75 SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~   95 (112)
                      ..+.+.|+.++|...+++..+
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            344444555555555555444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.62  E-value=0.014  Score=39.95  Aligned_cols=82  Identities=6%  Similarity=-0.026  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhcc---CC-Cc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEF---EV-VP-IMEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~---g~-~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      ..++..+=..+...|+.++|...+.+...-.   +- .| ...+++.+-..|.+.|++++|.+.|               
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence            3456666677777788887777777765311   10 11 2345666677777888888888777               


Q ss_pred             ----H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 ----W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                          |    ..|...|+.++|.+.+++..+
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                1    566677788888877777765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.60  E-value=0.012  Score=39.07  Aligned_cols=88  Identities=8%  Similarity=-0.051  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhcc-CcHHHHHHHHHHhhhc---cCCCcC-HHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770           14 EVTFVAVLTACARA-RLVELGLELFHSLLGE---FEVVPI-MEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      ..+++.+=..|.+. |++++|...+++...-   .+-.+. ..+++-+-..|.+.|++++|.+.|               
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            34677788888885 9999999999887641   111111 356788888999999999999998               


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                           |    ..+...|+.+.|...+++..++.|...
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence                 1    345667899999999999888777643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.60  E-value=0.015  Score=32.82  Aligned_cols=66  Identities=12%  Similarity=0.016  Sum_probs=52.9

Q ss_pred             HHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHH
Q 033770           32 LGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLL   94 (112)
Q Consensus        32 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~   94 (112)
                      ++...+++..+  --+.+...+..+-..|.+.|++++|.+.|             |    ..+...|+.++|...+++..
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666766653  12236788899999999999999999999             3    78889999999999999998


Q ss_pred             hcCCC
Q 033770           95 ELQPE   99 (112)
Q Consensus        95 ~~~~~   99 (112)
                      +..|.
T Consensus        81 ~~~~~   85 (115)
T 2kat_A           81 AAAQS   85 (115)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            76654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.58  E-value=0.0026  Score=35.08  Aligned_cols=77  Identities=14%  Similarity=0.019  Sum_probs=54.9

Q ss_pred             HHHHhccCcHHHHHHHHHHhhhccCCCc-CHH-HHHHHHHHHHhcCChhHHHHHHH----------HHHHhhCChhHHHH
Q 033770           21 LTACARARLVELGLELFHSLLGEFEVVP-IME-HYGCVVDLLGRAGLLSEANEFLW----------SACKIHGAVKLSHE   88 (112)
Q Consensus        21 i~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~-~~~~li~~~~~~g~~~~A~~~f~----------~~~~~~g~~~~a~~   88 (112)
                      -..+.+.|++++|...+++..+ .  .| +.. .+..+-..|.+.|++++|.+.|-          .++. .+.+.++..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~a~~   82 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQ-T--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA-RKMVMDILN   82 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH-H--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH-HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHH
Confidence            3456788999999999999875 2  34 556 78888888999999999999981          2222 245666666


Q ss_pred             HHHHHHhcCCCCC
Q 033770           89 VGKRLLELQPEHC  101 (112)
Q Consensus        89 ~~~~m~~~~~~~~  101 (112)
                      .+++.....|+++
T Consensus        83 ~~~~~~~~~p~~~   95 (99)
T 2kc7_A           83 FYNKDMYNQLEHH   95 (99)
T ss_dssp             HHCCTTHHHHCCS
T ss_pred             HHHHHhccCcccc
Confidence            6666655555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.57  E-value=0.019  Score=32.30  Aligned_cols=60  Identities=17%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+...+..+-..+.+.|++++|...+++... . .+.+...+..+-..|.+.|++++|.+.|
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~  103 (131)
T 2vyi_A           44 ANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-I-DPAYSKAYGRMGLALSSLNKHVEAVAYY  103 (131)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-c-CccCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4677888888999999999999999999885 3 2235778889999999999999999997

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.55  E-value=0.052  Score=35.88  Aligned_cols=80  Identities=11%  Similarity=0.028  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhc---c-CCCcC-HHHHHHHHHHHHhcCChhHHHHHH-----------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGE---F-EVVPI-MEHYGCVVDLLGRAGLLSEANEFL-----------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~f-----------------   73 (112)
                      +++.+-..|...|++++|...+++....   . +..|. ..++.-+-..|.+.|++++|.+.+                 
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            6889999999999999999999998731   1 23332 347788899999999999999998                 


Q ss_pred             --H----HHHHhhCC-hhHHHHHHHHHHh
Q 033770           74 --W----SACKIHGA-VKLSHEVGKRLLE   95 (112)
Q Consensus        74 --~----~~~~~~g~-~~~a~~~~~~m~~   95 (112)
                        |    ..+.+.|+ .++|.+.+++...
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence              2    66677784 5999999988874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.49  E-value=0.019  Score=30.59  Aligned_cols=61  Identities=25%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      +...+..+-..|.+.|++++|.+.|             |    ..+...|+.++|...+++..+..|.++..+..+..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4567777888899999999999998             2    77888999999999999999989988766655543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.47  E-value=0.033  Score=37.23  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..+++.+=..|.+ |++++|...+++...-   .|-.+ ...+++-+-..|.+.|++++|.+.|                
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            3466677777777 9999998888876631   11111 1456777888899999999999888                


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                         |    ..+...|+.+.|...|++.. ..|...
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence               1    23344589999999999888 777543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.47  E-value=0.011  Score=40.74  Aligned_cols=81  Identities=7%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-----CHHHHHHHHHH----HHhcCChhHHHHHH---------H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-----IMEHYGCVVDL----LGRAGLLSEANEFL---------W   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-----~~~~~~~li~~----~~~~g~~~~A~~~f---------~   74 (112)
                      +...+..++..+.+.|+.+.|...++.|.+   ..|     +..+..-|..+    ....++.++|..+|         |
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~  211 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW  211 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc
Confidence            567777889999999999999999999975   245     24444444444    33344899999998         3


Q ss_pred             -------HHHHhhCChhHHHHHHHHHHhc
Q 033770           75 -------SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        75 -------~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                             .++.+.|++++|++.++.+.+.
T Consensus       212 ~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          212 KTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             ccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   6778899999999999987765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.42  E-value=0.029  Score=38.30  Aligned_cols=79  Identities=4%  Similarity=-0.098  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      ..+|..+-.++.+.|++++|...+++..+ .. +.+...|..+-.+|.+.|++++|.+.|             |    ..
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALE-LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            47888999999999999999999999885 32 237888999999999999999999999             2    66


Q ss_pred             HHhhCChhHH-HHHHHHHH
Q 033770           77 CKIHGAVKLS-HEVGKRLL   94 (112)
Q Consensus        77 ~~~~g~~~~a-~~~~~~m~   94 (112)
                      +.+.|+.++| ...++.|.
T Consensus       274 ~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6777888887 44555554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.40  E-value=0.038  Score=37.46  Aligned_cols=83  Identities=16%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCcC--HHHHHHHHHHHHhcCChhHHHHHH-----------------H---HHHHh
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVPI--MEHYGCVVDLLGRAGLLSEANEFL-----------------W---SACKI   79 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f-----------------~---~~~~~   79 (112)
                      ..+.+.+++++|+..|+...+ .. .|.  ...+..+=.++.+.|++++|++.|                 +   .++.+
T Consensus       143 ~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          143 VVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence            355666777777777764432 11 111  124555556677777777777766                 1   55667


Q ss_pred             hCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           80 HGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        80 ~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .|+.++|..+|+++...+|. +.....|
T Consensus       221 lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          221 QGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            77778888888877777776 4444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.32  E-value=0.034  Score=40.44  Aligned_cols=82  Identities=5%  Similarity=-0.122  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH--------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLG----EFE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL--------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f--------------   73 (112)
                      ..+++.|-..|...|++++|..++++...    .+| -.| ...+++-|-..|...|++++|+.++              
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            45788999999999999999999888663    123 224 4566788999999999999999998              


Q ss_pred             --H---------HHHHhhCChhHHHHHHHHHHh
Q 033770           74 --W---------SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 --~---------~~~~~~g~~~~a~~~~~~m~~   95 (112)
                        .         .++...+..+.|+.+++.+++
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0         666677889999999999875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.26  E-value=0.054  Score=33.11  Aligned_cols=83  Identities=11%  Similarity=-0.084  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      ...++..+-..+...|++++|...+++...   +.|..| ....++.+-..|...|++++|.+.+               
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            566788888889999999999999988764   122333 4566778888999999999999998               


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                           +    ..+...|++++|...+++..+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                 1    667778999999999998875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.25  E-value=0.043  Score=34.86  Aligned_cols=74  Identities=11%  Similarity=0.050  Sum_probs=57.1

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCcC-HHHH-----------------HHHHHHHHhcCChhHHHHHH--------------
Q 033770           26 RARLVELGLELFHSLLGEFEVVPI-MEHY-----------------GCVVDLLGRAGLLSEANEFL--------------   73 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~f--------------   73 (112)
                      ..|+.++|...|++..+.   .|+ ...+                 -.+-..|.+.|++++|.+.|              
T Consensus       108 ~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  184 (225)
T 2yhc_A          108 DPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATR  184 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccH
Confidence            368899999999999852   243 2222                 23445688999999999998              


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                        |    .++.+.|+.++|.+.++.+....|++..
T Consensus       185 ~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          185 DALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence              2    7888999999999999999887787543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.24  E-value=0.014  Score=32.49  Aligned_cols=51  Identities=8%  Similarity=-0.113  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      +...+..+-..|.+.|++++|.+.|             |    .++...|+.++|.+.+++..++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            6677888899999999999999999             3    8888999999999999998875543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.21  E-value=0.017  Score=32.53  Aligned_cols=62  Identities=10%  Similarity=-0.034  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCC--CcC----HHHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEV--VPI----MEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~--~p~----~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +.+...+..+-..+.+.|++++|...+++... ..-  .++    ...+..+-..|.+.|++++|.+.|
T Consensus        35 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  102 (131)
T 1elr_A           35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY  102 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34677888888999999999999999999875 221  122    778888999999999999999997

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.21  E-value=0.072  Score=30.69  Aligned_cols=83  Identities=12%  Similarity=-0.057  Sum_probs=63.0

Q ss_pred             CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhH
Q 033770           10 LRAN----EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKL   85 (112)
Q Consensus        10 ~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~   85 (112)
                      ..|+    ...|..+-..+.+.|++++|...+++..+ . -..+...+..+-..|.+.|++++|.+.|-.+.....+...
T Consensus        57 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (148)
T 2dba_A           57 LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-K-DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-h-CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence            4566    67888888899999999999999999875 2 2236778888999999999999999996344444445555


Q ss_pred             HHHHHHHHH
Q 033770           86 SHEVGKRLL   94 (112)
Q Consensus        86 a~~~~~~m~   94 (112)
                      +...+..+.
T Consensus       135 ~~~~l~~~~  143 (148)
T 2dba_A          135 FQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.20  E-value=0.011  Score=42.53  Aligned_cols=77  Identities=10%  Similarity=-0.077  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..+|..+-.++.+.|++++|...+++..+ . -+-+...|..+-.+|.+.|++++|.+.|             |    .
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIE-L-DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            578889999999999999999999999885 3 2236788899999999999999999999             2    2


Q ss_pred             H--HHhhCChhHHHHHHH
Q 033770           76 A--CKIHGAVKLSHEVGK   91 (112)
Q Consensus        76 ~--~~~~g~~~~a~~~~~   91 (112)
                      +  +.+.|++++|.+.++
T Consensus       117 ~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          117 CNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhcccc
Confidence            3  667788999998888

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.14  E-value=0.014  Score=40.73  Aligned_cols=61  Identities=13%  Similarity=-0.094  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHH--HHHHHH-HHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIME--HYGCVV-DLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~--~~~~li-~~~~~~g~~~~A~~~f   73 (112)
                      .+..++..+=..+.+.|++++|...|++..+ ....|...  .+..+- -.+.+.|+.++|.+.|
T Consensus       332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y  395 (472)
T 4g1t_A          332 NLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF  395 (472)
T ss_dssp             TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3455677788889999999999999999875 33333211  122221 1245678999998876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.11  E-value=0.026  Score=38.62  Aligned_cols=58  Identities=16%  Similarity=0.117  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLG---EFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +++.+=..+...|++++|...+++...   ..+-+....++..+-..|.+.|++++|.+.+
T Consensus       224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  284 (378)
T 3q15_A          224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI  284 (378)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            444455555566666666666665542   0022223445555666666666666666665

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.11  E-value=0.039  Score=34.92  Aligned_cols=81  Identities=5%  Similarity=-0.162  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC----ChhHHHHHH-----------H---
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG----LLSEANEFL-----------W---   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~f-----------~---   74 (112)
                      |...+..|=..+.+.++.++|...|++... .|   +...+..|=..|.+ |    ++++|.+.|           +   
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~L   91 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVL   91 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            556666666677778899999999998875 44   45666666667777 6    888999888           1   


Q ss_pred             -HHHHh----hCChhHHHHHHHHHHhcCC
Q 033770           75 -SACKI----HGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        75 -~~~~~----~g~~~~a~~~~~~m~~~~~   98 (112)
                       ..|..    .++.++|.+.+++..+.+|
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence             33333    6688888888888776655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.03  E-value=0.02  Score=39.14  Aligned_cols=84  Identities=8%  Similarity=-0.029  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---H-H-H
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---S-A-C   77 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---~-~-~   77 (112)
                      .|..+=.++.+.|++++|...+++..+ .. .-+...|..+-.+|.+.|++++|.+.|             +   . . .
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLT-EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            788888899999999999999999875 22 237788999999999999999999999             1   1 1 2


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCC
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      ...+..+.+...++.|.+..|.++
T Consensus       310 ~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCC
Confidence            334567778888888887777553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.96  E-value=0.014  Score=34.02  Aligned_cols=53  Identities=8%  Similarity=-0.014  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           52 HYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        52 ~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      .+.-|=..|-+.|++++|.+.|             |    .+|...|++++|.+.+++..++.|..+..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            3444555788999999999999             3    788899999999999999998877665443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.96  E-value=0.027  Score=38.53  Aligned_cols=83  Identities=8%  Similarity=-0.007  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGE---FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..+++.+=..|...|++++|...+++...-   .+-.+ ...+++.+-..|.+.|++++|.+.|                
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  263 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL  263 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence            456777778888999999999999887641   11111 2247778888899999999999998                


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                         +    ..+...|+.++|...+++..+.
T Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence               1    6777889999999999988763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.93  E-value=0.017  Score=38.70  Aligned_cols=85  Identities=8%  Similarity=-0.101  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..+|+.+-..|.+.|++++|...+++...   +.|-.+ -..+++-+-..|.+ |++++|.+.|                
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            45778888888899999999988887653   112111 24567778888888 9999999998                


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                         |    ..+...|+.++|...+++..+..|.
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               1    6677889999999999999875543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.93  E-value=0.044  Score=31.11  Aligned_cols=76  Identities=14%  Similarity=0.003  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPI----MEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGK   91 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~   91 (112)
                      .+..+-.++.+.|++++|...+++... ..  |+    ...+..+-..|.+.|++++|.+.|=.......+...+.....
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVS-RY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH-HC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            666777888999999999999999885 22  33    566778888999999999999997222233333344444433


Q ss_pred             HHH
Q 033770           92 RLL   94 (112)
Q Consensus        92 ~m~   94 (112)
                      .+.
T Consensus       118 ~l~  120 (129)
T 2xev_A          118 RLQ  120 (129)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.87  E-value=0.18  Score=33.21  Aligned_cols=78  Identities=12%  Similarity=0.094  Sum_probs=59.2

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhcc--CCCcC--HHHHHHHHHHHHhcCChhHHHHHH--------------------H
Q 033770           19 AVLTACARARLVELGLELFHSLLGEF--EVVPI--MEHYGCVVDLLGRAGLLSEANEFL--------------------W   74 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~~--g~~p~--~~~~~~li~~~~~~g~~~~A~~~f--------------------~   74 (112)
                      .+-..+...|++++|...+++.....  ...+.  ..+|+.+-..|.+.|++++|.+.|                    |
T Consensus       120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~  199 (293)
T 2qfc_A          120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence            34455677889999999988876311  11122  457888899999999999999998                    1


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhc
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                          ..|...|+.++|...+++..+.
T Consensus       200 ~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          200 YNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                6778889999999999988763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.86  E-value=0.065  Score=36.31  Aligned_cols=74  Identities=7%  Similarity=-0.161  Sum_probs=60.2

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-----------------H--HHHHh
Q 033770           19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-----------------W--SACKI   79 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-----------------~--~~~~~   79 (112)
                      .....+...|++++|.++|+.+.. .+  |+....-.+-..+.+.|++++|++.|                 |  .++..
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~-~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPV-AG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCC-TT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHh-cC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence            456677889999999999999874 22  54435555556899999999999988                 2  78899


Q ss_pred             hCChhHHHHHHHHHHh
Q 033770           80 HGAVKLSHEVGKRLLE   95 (112)
Q Consensus        80 ~g~~~~a~~~~~~m~~   95 (112)
                      .|++++|+..|++...
T Consensus       184 LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          184 LALFTEAERRLTEAND  199 (282)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9999999999998874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.86  E-value=0.024  Score=37.62  Aligned_cols=61  Identities=13%  Similarity=0.010  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      +...+..+-..+.+.|++++|.+.|             |    ..+.+.|++++|...+++..+..|+++..+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4566777888899999999999999             2    77888999999999999999999988766655543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.82  E-value=0.058  Score=44.29  Aligned_cols=89  Identities=16%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------H----------
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------W----------   74 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------~----------   74 (112)
                      +...|..+=..|...|++++|..+|...          ..|..+...|++.|++++|.+.+        |          
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence            3334444444444555555555555442          25666666666666666666665        3          


Q ss_pred             ------------------------HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           75 ------------------------SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        75 ------------------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                                              ..|.+.|.+++|.++++.-.+++|.+...+.-|..+|
T Consensus      1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence                                    3456667788888888777666666666665554444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.39  E-value=0.026  Score=35.08  Aligned_cols=78  Identities=14%  Similarity=0.029  Sum_probs=53.8

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCCh----------hHHHHHH-------------H----HH
Q 033770           25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLL----------SEANEFL-------------W----SA   76 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~----------~~A~~~f-------------~----~~   76 (112)
                      .+.+.+++|...++...+   ..| +...|+-+=.++.+.|++          ++|...|             |    .+
T Consensus        13 ~r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            345667788888877764   223 666666565666666654          4777777             2    56


Q ss_pred             HHhh-----------CChhHHHHHHHHHHhcCCCCCcchh
Q 033770           77 CKIH-----------GAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        77 ~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      |.+.           |++++|.+.|++..+++|++..+..
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6555           4899999999999999998765443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.21  E-value=0.21  Score=30.80  Aligned_cols=60  Identities=13%  Similarity=0.010  Sum_probs=34.9

Q ss_pred             CCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhccCCCc--CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARAR---LVELGLELFHSLLGEFEVVP--IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ++.-+--.+=.++++++   ++++|..+++...+ .. .|  +....--|=-+|.+.|++++|.+.|
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            45555555555667777   67788888888876 33 23  1222222333456666666666665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.11  E-value=0.1  Score=31.12  Aligned_cols=58  Identities=16%  Similarity=-0.107  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ...|..+-.++.+.|++++|...+++..+ .. +.+...|..+-.+|.+.|++++|.+.|
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~  120 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLK-RE-ETNEKALFRRAKARIAAWKLDEAEEDL  120 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHhcHHHHHHHH
Confidence            46788888899999999999999999885 32 236888899999999999999999997

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.07  E-value=0.074  Score=28.88  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=39.0

Q ss_pred             HHHHHhcCChhHHHHHH--------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           57 VDLLGRAGLLSEANEFL--------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        57 i~~~~~~g~~~~A~~~f--------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      -..+.+.|++++|.+.|              |    ..+...|+.++|.+.|++..+..|+++..+
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            34567788888888887              2    667788999999999999999999877654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.70  E-value=0.11  Score=30.06  Aligned_cols=44  Identities=16%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |.-+..+-+..+-. +.+.|++.+..+.++++-|..++.-|.++|
T Consensus        25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~l   68 (109)
T 1v54_E           25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRIL   68 (109)
T ss_dssp             CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34455555556554 677777777777777777777777777776

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.67  E-value=0.29  Score=33.04  Aligned_cols=81  Identities=14%  Similarity=0.023  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhc---cCCC--c-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGE---FEVV--P-IMEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      +++.+-..+...|++++|...+++....   .+..  | ....+..+-..|...|++++|.+.+                
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            3556667788899999999999887641   1222  3 3445666778899999999999988                


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                        |    ..+...|+.++|...+++....
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              1    5567789999999999998764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.62  E-value=0.31  Score=36.86  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------H----HHHHhhCChhHHH
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------W----SACKIHGAVKLSH   87 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------~----~~~~~~g~~~~a~   87 (112)
                      ++.+.|..+|+...+.  +.-+...|...++.....|+.+.|..+|                |    .-=.+.|+.+.+.
T Consensus       484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~  561 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR  561 (679)
T ss_dssp             SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4466677777666642  3234455566666666667777776666                3    2223457777777


Q ss_pred             HHHHHHHhcCCCC
Q 033770           88 EVGKRLLELQPEH  100 (112)
Q Consensus        88 ~~~~~m~~~~~~~  100 (112)
                      .+.+.+.+..|++
T Consensus       562 ~v~~R~~~~~P~~  574 (679)
T 4e6h_A          562 TLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            7777777666654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.44  E-value=0.51  Score=31.77  Aligned_cols=84  Identities=11%  Similarity=-0.020  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH------------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL------------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f------------------   73 (112)
                      +++.+-..+...|++++|...+++...   +.|-.. ...+++.+-..+...|++++|.+.+                  
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            455566777888999999999888763   112111 1233566777788999999999887                  


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                         +    ..+...|++++|...+++..+..+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence               1    4566789999999999998875543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.38  E-value=0.25  Score=40.81  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      -|...|.-++.++.+.|++++|.+.+...++ ..  ++....+.+..+|++.+++++..++.
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence            3566777888888888999889888876553 22  33333334777777777766544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.38  E-value=0.21  Score=30.75  Aligned_cols=57  Identities=14%  Similarity=-0.002  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..|..+-.++.+.|++++|...+++... . -+.+...+..+-.+|.+.|++++|.+.|
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~  145 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLK-I-DKNNVKALYKLGVANMYFGFLEEAKENL  145 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence            6788888889999999999999999885 3 2337788889999999999999999998

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.06  E-value=0.33  Score=34.37  Aligned_cols=79  Identities=6%  Similarity=-0.185  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhccC---cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH-----------H---
Q 033770           16 TFVAVLTACARAR---LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL-----------W---   74 (112)
Q Consensus        16 t~~~li~~~~~~~---~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f-----------~---   74 (112)
                      .+..+=..+.+.|   +.++|...+++... .|   +...+..|=..|.+    .+++++|.+.|           |   
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~L  405 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAA-KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQL  405 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3444444444434   67777777777765 32   45666666667766    67888888877           1   


Q ss_pred             -HHHHh----hCChhHHHHHHHHHHhcCC
Q 033770           75 -SACKI----HGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        75 -~~~~~----~g~~~~a~~~~~~m~~~~~   98 (112)
                       ..|..    .++.++|...|+...+.+|
T Consensus       406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          406 GEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence             33333    6788888888888777663

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=93.89  E-value=0.46  Score=32.88  Aligned_cols=58  Identities=7%  Similarity=-0.145  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +..+|..+-.++.+.|++++|...+++..+   +.| +...|..+-.+|.+.|++++|.+.|
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l  330 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADL  330 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHH
Confidence            456788888889999999999999999875   234 6788889999999999999999997

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.83  E-value=0.8  Score=31.35  Aligned_cols=82  Identities=15%  Similarity=0.048  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhcc---CCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEF---EVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..++..+-..+...|++++|..+++......   +-.| ....+..++..|...|++++|..++                
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  214 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT  214 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence            3466778888899999999999988876421   1122 3567888999999999999999887                


Q ss_pred             ----H----HHHHhhCChhHHHHHHHHHHh
Q 033770           74 ----W----SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a~~~~~~m~~   95 (112)
                          +    ..+...++++.|...|.+..+
T Consensus       215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          215 VAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                1    445566888888887777753

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=93.80  E-value=0.31  Score=34.79  Aligned_cols=60  Identities=8%  Similarity=0.001  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLG----EFE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..++++|-.+|...|++++|+.++++...    .+| -.| ...+++-|=..|...|++++|+.++
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~  405 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKAL  405 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            36788999999999999999999988763    133 234 4456788999999999999999998

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.75  E-value=0.43  Score=36.12  Aligned_cols=83  Identities=7%  Similarity=-0.046  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhc-cCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGE-FEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SA   76 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~   76 (112)
                      ..|...+....+.|.++.|..+|++.... ....+.+....+.+.-.+ .++.+.|.++|             |    .-
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f  513 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            46888888888889999999999999862 112334444444444222 35589999998             3    33


Q ss_pred             HHhhCChhHHHHHHHHHHhcCC
Q 033770           77 CKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        77 ~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                      ....|+.+.|..+|+......|
T Consensus       514 e~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          514 LIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHhCCCHHHHHHHHHHHHHhcC
Confidence            3457899999999999887555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.43  E-value=0.56  Score=32.13  Aligned_cols=25  Identities=4%  Similarity=-0.134  Sum_probs=16.9

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhh
Q 033770           17 FVAVLTACARARLVELGLELFHSLL   41 (112)
Q Consensus        17 ~~~li~~~~~~~~~~~a~~~~~~m~   41 (112)
                      +..+...|.+.|++++|...+....
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5566677777777777777666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.33  E-value=0.32  Score=34.58  Aligned_cols=60  Identities=20%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhh----ccC-CCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLG----EFE-VVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..+++.|..+|...|++++|+.++++...    .+| -.| ...+++-|-..|...|++++|++++
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~  394 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL  394 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45788899999999999999999987763    123 334 4456788899999999999999998

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=93.29  E-value=0.9  Score=28.45  Aligned_cols=41  Identities=12%  Similarity=-0.074  Sum_probs=23.2

Q ss_pred             cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770           29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL   73 (112)
Q Consensus        29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f   73 (112)
                      +.++|...|++... .|   +...+..|=..|.+    .+++++|.+.|
T Consensus        68 ~~~~A~~~~~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  112 (212)
T 3rjv_A           68 DYPQARQLAEKAVE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLL  112 (212)
T ss_dssp             CHHHHHHHHHHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence            66666666666653 33   34445555555554    56666666665

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.22  E-value=0.28  Score=29.93  Aligned_cols=44  Identities=16%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      |.-+..+-+..+-. +.+.|++.+..+.++++-|..++--|.++|
T Consensus        68 D~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~l  111 (152)
T 2y69_E           68 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRIL  111 (152)
T ss_dssp             CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44455566666665 778888888888888888888888888887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=93.19  E-value=0.67  Score=32.90  Aligned_cols=58  Identities=10%  Similarity=-0.004  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ...|..+=.++.+.|++++|+..+++... .. ..+...|.-+-.+|.+.|++++|.+.|
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~  374 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALG-LD-SANEKGLYRRGEAQLLMNEFESAKGDF  374 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            57888888999999999999999999885 22 237888889999999999999999999

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.12  E-value=0.59  Score=25.86  Aligned_cols=28  Identities=11%  Similarity=-0.069  Sum_probs=20.1

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      ..+-+.|++++|...|+.+.+..|.++.
T Consensus        51 ~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           51 NDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4556778888888888888877776433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=92.87  E-value=0.56  Score=30.94  Aligned_cols=68  Identities=12%  Similarity=-0.067  Sum_probs=48.2

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------------H----HHHHhhCChh
Q 033770           24 CARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------------W----SACKIHGAVK   84 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------------~----~~~~~~g~~~   84 (112)
                      +.+.++.+.|...+++... . -+.+...+..+-..|.+.|++++|.+.|               |    ..+...|+.+
T Consensus       195 l~~~~~~~~a~~~l~~al~-~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVA-E-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHhhcccCccHHHHHHHHh-c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            5566677778888877764 1 1236778888888999999999999988               1    5556666667


Q ss_pred             HHHHHHHHH
Q 033770           85 LSHEVGKRL   93 (112)
Q Consensus        85 ~a~~~~~~m   93 (112)
                      .|...+++-
T Consensus       273 ~a~~~~r~a  281 (287)
T 3qou_A          273 ALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            766666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.73  E-value=0.71  Score=25.73  Aligned_cols=58  Identities=7%  Similarity=-0.075  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEF-----EVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      -.-.|=..+.+.++++.|...++...+..     +-.+....+..|-.+|.+.|++++|.+.+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~   69 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            34455566778899999999998877521     12245566777777777777777777765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=92.60  E-value=1.9  Score=30.39  Aligned_cols=43  Identities=5%  Similarity=-0.100  Sum_probs=20.0

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHh----cCChhHHHHHH
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGR----AGLLSEANEFL   73 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f   73 (112)
                      .++.++|...+++... .|   +...+..+-..|..    .+++++|.++|
T Consensus       200 ~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~  246 (490)
T 2xm6_A          200 ERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLF  246 (490)
T ss_dssp             CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            4555555555555443 22   23344444444443    45555555554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=92.50  E-value=0.75  Score=28.45  Aligned_cols=58  Identities=17%  Similarity=0.033  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhcc-----CCCc-CHHHH----HHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEF-----EVVP-IMEHY----GCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~p-~~~~~----~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..|+.+=.++.+.|++++|+..+++... .     -+.| +...|    .-.=.++...|++++|.+-|
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~-l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y  125 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALH-YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  125 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence            3899999999999999999999999875 2     1256 45566    77778899999999999997

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=91.35  E-value=1.2  Score=31.39  Aligned_cols=54  Identities=13%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHH---------H-------HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           48 PIMEHYGCVVDLLGRAGLLSEANEFL---------W-------SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        48 p~~~~~~~li~~~~~~g~~~~A~~~f---------~-------~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      .+...|.++-..+.-.|++++|.+.+         |       ..+...|+.++|.+.+++...++|..+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            35555555544444456666666666         2       444566777777777777777777554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.22  E-value=0.78  Score=34.15  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=15.6

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLL   41 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~   41 (112)
                      +...|..|=..+.+.++++.|.+.|.++.
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34455555555555555555555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.88  E-value=2.1  Score=31.84  Aligned_cols=44  Identities=11%  Similarity=-0.027  Sum_probs=32.2

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ...+.|+++.|.++-..+.       +...|..|-+.+.+.|+++.|++.|
T Consensus       661 ~~l~~~~~~~A~~~~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y  704 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES-------AEMKWRALGDASLQRFNFKLAIEAF  704 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHH
Confidence            3456788888888766554       3467777888888888888888777

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=90.71  E-value=3.6  Score=30.23  Aligned_cols=94  Identities=13%  Similarity=0.043  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHhccC--cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC-ChhHHHHHH-------------H-
Q 033770           12 ANEVTFVAVLTACARAR--LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG-LLSEANEFL-------------W-   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~f-------------~-   74 (112)
                      -+..+|+.--....+.+  +++++...++++.+ ... -|...|+---....+.| .++++.+.+             | 
T Consensus       105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~-~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLE-ADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH-HCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh-hcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            36677777777777888  77999999999986 332 37888887777778888 888998887             5 


Q ss_pred             ---HHHHh--------------hCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 ---SACKI--------------HGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 ---~~~~~--------------~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                         ..+.+              .+..+++.+.+++....+|.+.+.+..+
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~  232 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  232 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence               22222              1457889999998888999998876644

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=90.03  E-value=1.5  Score=24.32  Aligned_cols=55  Identities=22%  Similarity=0.192  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHH--------------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           49 IMEHYGCVVDLLGRAGLLSEANEFL--------------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        49 ~~~~~~~li~~~~~~g~~~~A~~~f--------------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      +..-+-.|=..+-+.|+++.|...|                    +    .++.+.|+.+.|...+++..+..|+++..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            3445556666777777777777777                    1    77888999999999999999999987553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=87.45  E-value=0.23  Score=30.73  Aligned_cols=29  Identities=10%  Similarity=0.074  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           83 VKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        83 ~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      +++|...|++..+++|+....+.-+-++|
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            45999999999999999877666555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=86.96  E-value=3.9  Score=27.95  Aligned_cols=67  Identities=18%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhhccCCCcC---HHHHHHHHHHHHhc-----CChhHHHHHH-----------------H-HHHHh-hCC
Q 033770           30 VELGLELFHSLLGEFEVVPI---MEHYGCVVDLLGRA-----GLLSEANEFL-----------------W-SACKI-HGA   82 (112)
Q Consensus        30 ~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~f-----------------~-~~~~~-~g~   82 (112)
                      +..|...+++..+   +-|+   ...|..|-..|.+.     |+.++|.+.|                 | +.+++ .|+
T Consensus       179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            4566666666553   4455   56889999999995     9999999999                 2 66666 499


Q ss_pred             hhHHHHHHHHHHhcCCC
Q 033770           83 VKLSHEVGKRLLELQPE   99 (112)
Q Consensus        83 ~~~a~~~~~~m~~~~~~   99 (112)
                      .+.+.+.+++.....|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999986665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=86.81  E-value=1.9  Score=30.39  Aligned_cols=60  Identities=8%  Similarity=0.055  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +.+..+|..+--.+...|++++|...+++... ..  |+...|..+=..+.-.|++++|.+.|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln--~s~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID-LE--MSWLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            45666666665555566888888888888875 44  77777767777778888888888876

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=86.13  E-value=3.7  Score=24.34  Aligned_cols=29  Identities=10%  Similarity=0.067  Sum_probs=22.0

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      -++.+.|+.++|.+.++.+.+.+|.+.-.
T Consensus        82 vg~yklg~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           82 VGNYRLKEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            67777888888888888888878876443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.57  E-value=3.7  Score=23.71  Aligned_cols=53  Identities=19%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH
Q 033770            5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL   59 (112)
Q Consensus         5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~   59 (112)
                      +-...+.|+.....+.|+||-+.+++..|.++|+..+.  ++.+...+|..++.-
T Consensus        36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~--K~~~~~~iY~~~lqE   88 (109)
T 1v54_E           36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQE   88 (109)
T ss_dssp             HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHHH
T ss_pred             HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcCchhhHHHHHHH
Confidence            33456889999999999999999999999999999885  344445567776653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.55  E-value=3.6  Score=28.73  Aligned_cols=53  Identities=11%  Similarity=-0.135  Sum_probs=42.9

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           19 AVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        19 ~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .++.++...|+.+++..........  -+-+-..|-.+|.+|.+.|+..+|.+.|
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y  228 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAY  228 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4566677889999999888887642  2227778999999999999999999998

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=84.97  E-value=8.5  Score=27.65  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH---------H---HHH-HhhCChhHHHHHHHHHH
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL---------W---SAC-KIHGAVKLSHEVGKRLL   94 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f---------~---~~~-~~~g~~~~a~~~~~~m~   94 (112)
                      ++.+.|..+|+...+..+  -+...|...++...+.|+.+.|..+|         |   ..+ ...|+.+.+..+++...
T Consensus       334 ~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          334 GSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            368899999998876332  23445667788788889999999777         4   222 45699999999888876


Q ss_pred             h
Q 033770           95 E   95 (112)
Q Consensus        95 ~   95 (112)
                      .
T Consensus       412 ~  412 (493)
T 2uy1_A          412 D  412 (493)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=84.17  E-value=7.7  Score=26.25  Aligned_cols=78  Identities=10%  Similarity=0.048  Sum_probs=57.5

Q ss_pred             CcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChh--HHHHHH-------------H--HHH--HhhCC------
Q 033770           28 RLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLS--EANEFL-------------W--SAC--KIHGA------   82 (112)
Q Consensus        28 ~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~f-------------~--~~~--~~~g~------   82 (112)
                      +++++++.+++.+..  .-+-+...|+----.+.+.|+++  ++.+.+             |  +++  ...+.      
T Consensus       124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence            788999999999985  22337888887777777888888  888877             5  332  22333      


Q ss_pred             hhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           83 VKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        83 ~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      .+++.+.+++....+|.+.+.+..+
T Consensus       202 ~~eEl~~~~~aI~~~p~n~SaW~y~  226 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNPSTWNYL  226 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHH
Confidence            7788888888888999987766543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=83.80  E-value=9.9  Score=27.32  Aligned_cols=75  Identities=19%  Similarity=0.120  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHH--HHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYG--CVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      ..|...+.-.-+.+.++.|..+|++. +..+.  +...|.  +.+.... .++.+.|.++|             |    .
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~--~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGV--GPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCC--CHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCC--ChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            45666677666778899999999998 32333  334443  4444332 23689999998             2    2


Q ss_pred             HHHhhCChhHHHHHHHHH
Q 033770           76 ACKIHGAVKLSHEVGKRL   93 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m   93 (112)
                      -....|+.+.|..+|+..
T Consensus       363 ~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          363 FLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHTCHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            234567888888887764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=83.30  E-value=5.9  Score=24.24  Aligned_cols=75  Identities=11%  Similarity=-0.086  Sum_probs=56.2

Q ss_pred             cCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC---ChhHHHHHH----------------H---HHHHhhCChh
Q 033770           27 ARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG---LLSEANEFL----------------W---SACKIHGAVK   84 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~f----------------~---~~~~~~g~~~   84 (112)
                      ...+..+.+-+..... .|. ++..+.--+-.++++++   +++++.++|                |   -++.+.|+.+
T Consensus        11 ~~~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~   88 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence            3455666666666554 344 67777777777888887   666888777                2   7889999999


Q ss_pred             HHHHHHHHHHhcCCCCCcc
Q 033770           85 LSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        85 ~a~~~~~~m~~~~~~~~~~  103 (112)
                      +|.+.++.+.+.+|++.-.
T Consensus        89 ~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhcCCCCHHH
Confidence            9999999999999987543

>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=82.71  E-value=1.5  Score=25.74  Aligned_cols=37  Identities=8%  Similarity=-0.102  Sum_probs=20.0

Q ss_pred             HHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           36 LFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        36 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +|+.+.+ ..+.|++..--.-|......++++.|.++.
T Consensus        48 LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih   84 (118)
T 2yru_A           48 LREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIH   84 (118)
T ss_dssp             HHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444443 455555444444444455666777776665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=81.22  E-value=9  Score=28.15  Aligned_cols=75  Identities=15%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcC--ChhHHHHHH-------------H----HHHHhhC-ChhHHHHH
Q 033770           30 VELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAG--LLSEANEFL-------------W----SACKIHG-AVKLSHEV   89 (112)
Q Consensus        30 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~f-------------~----~~~~~~g-~~~~a~~~   89 (112)
                      +++++..++.+.+. . +-+...|+---..+.+.|  +++++.+.+             |    -.....| ..+++.+.
T Consensus        89 ~~~eL~~~~~~l~~-~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRV-N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence            89999999999852 2 227778877777778888  779999998             5    3344556 77889999


Q ss_pred             HHHHHhcCCCCCcchhh
Q 033770           90 GKRLLELQPEHCRRYVV  106 (112)
Q Consensus        90 ~~~m~~~~~~~~~~~~~  106 (112)
                      ++++.+.+|.+.+.+.-
T Consensus       167 ~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             HHTTTTTTCCCHHHHHH
T ss_pred             HHHHHHHCCCCccHHHH
Confidence            89888888988776553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=80.61  E-value=12  Score=26.19  Aligned_cols=13  Identities=8%  Similarity=0.036  Sum_probs=6.8

Q ss_pred             CcHHHHHHHHHHh
Q 033770           28 RLVELGLELFHSL   40 (112)
Q Consensus        28 ~~~~~a~~~~~~m   40 (112)
                      ++.++|...|++.
T Consensus       231 ~d~~~A~~~~~~a  243 (452)
T 3e4b_A          231 PDEKTAQALLEKI  243 (452)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            4555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.47
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.18
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.15
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.14
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.97
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.76
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.47
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.29
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.29
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.21
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.11
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.08
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.61
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.42
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.9
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.45
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	94.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.63
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	94.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.14
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	93.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	92.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.42
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	90.45
d1u9pa1	36	Arc repressor {Salmonella bacteriophage P22 [TaxId	88.49
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.41
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	86.71
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	85.85
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	83.77
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	82.11

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.8e-07  Score=58.42  Aligned_cols=96  Identities=13%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----H
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~   75 (112)
                      +..+|..+-..+.+.|+.++|...++....  ..+.+...+..+...|.+.|++++|.+.|             |    .
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  347 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            345666667777777777777777776653  33446666777777777777777777777             2    6


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      .+.+.|+.++|.+.+++..+++|+++..+.-|..+
T Consensus       348 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            67777888888888888888788777666555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.5e-06  Score=49.83  Aligned_cols=86  Identities=10%  Similarity=0.020  Sum_probs=73.5

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChh
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVK   84 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~   84 (112)
                      ..+.+.|++++|..+|.+... . -+-+...|..+=.+|.+.|++++|.+.+             |    .++...|+.+
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-c-CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            456788999999999999885 2 2237788999999999999999999999             3    8889999999


Q ss_pred             HHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           85 LSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        85 ~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      +|...+++..+..|+++.....+.+
T Consensus        89 ~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          89 EAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999998876665544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9.1e-06  Score=53.12  Aligned_cols=97  Identities=15%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      .+...+..+-..+.+.|++++|...+++... . -+-+...+..+-..|.+.|++++|.+.+             |    
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-L-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            4556667777888888999999999888764 2 2225677888888899999999999888             1    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ..+...|+.++|.+.+++..+..|+++..+..+..+
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  348 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            777888999999999999988888877666555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=7e-06  Score=50.10  Aligned_cols=89  Identities=7%  Similarity=-0.164  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           12 ANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        12 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      |+.-.+-..=..+.+.|++++|...|.+... .. +-+...|+-+-.+|.+.|++++|.+.|             |    
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~-~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            4555555555778899999999999998875 22 237788888999999999999999999             3    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                      .++...|++++|...|++..++.|.+..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence            8888999999999999999887765443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.1e-05  Score=48.21  Aligned_cols=82  Identities=10%  Similarity=0.050  Sum_probs=69.2

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      .+.+.|++++|...|.+..+ .. +-+...|.-+-..|.+.|++++|.+.|             |    .++...|+.++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIE-LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHhhhccc-cc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence            56789999999999999886 32 237888889999999999999999999             3    78889999999


Q ss_pred             HHHHHHHHHhcCCCCCcchhh
Q 033770           86 SHEVGKRLLELQPEHCRRYVV  106 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~  106 (112)
                      |...+++..+..|.++.....
T Consensus        97 A~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          97 ALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHH
Confidence            999999999999987665443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.3e-05  Score=52.14  Aligned_cols=93  Identities=12%  Similarity=-0.017  Sum_probs=74.8

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H---
Q 033770           11 RANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W---   74 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~---   74 (112)
                      .++...+..+-..+...|++++|...+++... .. +-+...|..+-..|.+.|++++|.+.|             |   
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  246 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  246 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhcccccccc-cc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHH
Confidence            34567788888889999999999999999875 22 226778889999999999999999999             3   


Q ss_pred             -HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           75 -SACKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        75 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                       ..|.+.|+.++|.+.|++..++.|.+.....
T Consensus       247 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence             7888999999999999999988887655433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.1e-05  Score=46.89  Aligned_cols=88  Identities=14%  Similarity=0.027  Sum_probs=68.6

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCc-------------CHHHHHHHHHHHHhcCChhHHHHHH-------------H-
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVP-------------IMEHYGCVVDLLGRAGLLSEANEFL-------------W-   74 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p-------------~~~~~~~li~~~~~~g~~~~A~~~f-------------~-   74 (112)
                      ..+.+.|++++|...|.+...-..-.+             -..+|+-+-..|.+.|++++|.+.+             | 
T Consensus        21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~  100 (170)
T d1p5qa1          21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS  100 (170)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhH
Confidence            367889999999999988764111111             1245666777899999999999998             2 


Q ss_pred             ---HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           75 ---SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        75 ---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                         .++...|++++|...|++..+++|+++.....+..
T Consensus       101 ~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1         101 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence               78889999999999999999999998776655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.3e-05  Score=44.59  Aligned_cols=88  Identities=13%  Similarity=-0.098  Sum_probs=69.0

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh---hHHHHHH---------------H----H
Q 033770           18 VAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL---SEANEFL---------------W----S   75 (112)
Q Consensus        18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~f---------------~----~   75 (112)
                      ..+++.+...+++++|.+.|++... .+ +.+..++.-+-.++.+.++.   ++|.++|               |    .
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~-~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            4678888899999999999999875 22 23667777777777775554   4688887               2    7


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      +|.+.|+.++|.+.|++..+.+|++.....++
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            78899999999999999999999887654443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00018  Score=45.08  Aligned_cols=85  Identities=20%  Similarity=0.139  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SAC   77 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~   77 (112)
                      +|-.+=..|.+.|++++|...|++..+   +.| +..+|+.+=..|.+.|++++|.+.|             |    ..+
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~---l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhc---cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            444455677889999999999999875   244 7788999999999999999999999             2    677


Q ss_pred             HhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           78 KIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      ...|+.+.|...|+...+..|.+...
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~~~~~  141 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPNDPFR  141 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccccHHH
Confidence            88899999999999999888876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.0002  Score=46.65  Aligned_cols=57  Identities=14%  Similarity=0.070  Sum_probs=25.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .|.......-+.|+.+.|..+++++.. .........|...+....+.|++++|.++|
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~-~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLA-IEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT-SSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            344444444444555555555554432 111111234444455555555555555554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00012  Score=47.47  Aligned_cols=87  Identities=18%  Similarity=0.078  Sum_probs=69.2

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      .+...+..+++...+.+......-.++...+..+-..+.+.|++++|.+.|             |    ..+...|+.++
T Consensus       145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  224 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchh
Confidence            344556778888888887652233456778888999999999999999998             3    77889999999


Q ss_pred             HHHHHHHHHhcCCCCCcchhhhhc
Q 033770           86 SHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        86 a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      |.+.+++..+..|+++..+..+..
T Consensus       225 A~~~~~~al~~~p~~~~a~~~lg~  248 (323)
T d1fcha_         225 AVAAYRRALELQPGYIRSRYNLGI  248 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH
Confidence            999999999999988776655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=0.00058  Score=44.39  Aligned_cols=86  Identities=10%  Similarity=-0.036  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-HHhcCChhHHHHHH-------------H----H
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDL-LGRAGLLSEANEFL-------------W----S   75 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~f-------------~----~   75 (112)
                      ...|...+....+.|++++|..+|++... .+ +.+...|...... +...|+.+.|.++|             |    .
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~-~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~  211 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID  211 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHT-ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            44688888888888999999999988875 22 2234444333332 34457888888888             4    5


Q ss_pred             HHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           76 ACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        76 ~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      -..+.|+.++|..+|++..+..|.++
T Consensus       212 ~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         212 YLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            55677889999999998877555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.60  E-value=0.00046  Score=40.73  Aligned_cols=86  Identities=9%  Similarity=-0.013  Sum_probs=66.2

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccC---CCcC-----------HHHHHHHHHHHHhcCChhHHHHHH-------------H
Q 033770           22 TACARARLVELGLELFHSLLGEFE---VVPI-----------MEHYGCVVDLLGRAGLLSEANEFL-------------W   74 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g---~~p~-----------~~~~~~li~~~~~~g~~~~A~~~f-------------~   74 (112)
                      ..+.+.|++++|...+.+..+-..   -.++           ..+|+-+-..|.+.|++++|.+.+             |
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~  104 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKAL  104 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhh
Confidence            466788999999999988664111   1111           235555777889999999999999             3


Q ss_pred             ----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           75 ----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        75 ----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                          .++...|+++.|...|++..+++|+++.....+
T Consensus       105 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1         105 YKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                888999999999999999999999887654433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.47  E-value=0.00043  Score=38.76  Aligned_cols=69  Identities=7%  Similarity=-0.132  Sum_probs=59.3

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCCh
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAV   83 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~   83 (112)
                      ..+.+.|++++|...|++... .  .| +...|..+-..|.+.|++++|...|             |    ..|...|+.
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~-~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQ-K--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcc-c--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            456778999999999999885 2  35 6888899999999999999999999             3    788888999


Q ss_pred             hHHHHHHHHH
Q 033770           84 KLSHEVGKRL   93 (112)
Q Consensus        84 ~~a~~~~~~m   93 (112)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.45  E-value=0.0005  Score=41.04  Aligned_cols=91  Identities=10%  Similarity=-0.019  Sum_probs=68.8

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhhc-------------cCCCc-CHHHHHHHHHHHHhcCChhHHHHHH----------
Q 033770           18 VAVLTACARARLVELGLELFHSLLGE-------------FEVVP-IMEHYGCVVDLLGRAGLLSEANEFL----------   73 (112)
Q Consensus        18 ~~li~~~~~~~~~~~a~~~~~~m~~~-------------~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f----------   73 (112)
                      ...-..+.+.|++++|...+.+..+-             .-+.| +...|+-+-..|.+.|++++|...+          
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence            34455667889999998888776420             01223 4445566777899999999999998          


Q ss_pred             ---H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           74 ---W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        74 ---~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                         |    .++...|+.+.|.+.|+...++.|+++.....|.
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence               3    8888999999999999999999998876555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0008  Score=41.18  Aligned_cols=73  Identities=12%  Similarity=-0.010  Sum_probs=60.6

Q ss_pred             HHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhH
Q 033770           23 ACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKL   85 (112)
Q Consensus        23 ~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~   85 (112)
                      .+...|++++|.+.|.++..     |+..+|.-+=..|.+.|++++|.+.|             |    .++.+.|+.++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~~-----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            34677999999999987642     67778888888899999999999999             3    77789999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 033770           86 SHEVGKRLLELQPEH  100 (112)
Q Consensus        86 a~~~~~~m~~~~~~~  100 (112)
                      |.+-|++.....+.+
T Consensus        89 A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          89 AIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhCccC
Confidence            999999987655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0011  Score=37.82  Aligned_cols=76  Identities=8%  Similarity=0.025  Sum_probs=62.0

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH-------------H-----------HHH
Q 033770           22 TACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL-------------W-----------SAC   77 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f-------------~-----------~~~   77 (112)
                      ..+.+.|++++|...|.+..+ .. +.+...+.-+-..|.+.|++++|.+.+             |           ..+
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~-~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKE-LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-hC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            457788999999999999885 32 237888889999999999999999998             2           456


Q ss_pred             HhhCChhHHHHHHHHHHhcCCC
Q 033770           78 KIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        78 ~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                      ...+++++|.+.|++.....|+
T Consensus        90 ~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHhCCHHHHHHHHHHHHhcCCC
Confidence            6778999999999887765553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0019  Score=40.17  Aligned_cols=58  Identities=19%  Similarity=-0.032  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +..+|+.+=.++.+.|++++|...|++..+ .  .| +...+..+-..|.+.|++++|.+.|
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~  128 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-L--DPTYNYAHLNRGIALYYGGRDKLAQDDL  128 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHH-H--HhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence            567788888889999999999999999885 2  34 5667888888899999999999998

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00082  Score=44.10  Aligned_cols=89  Identities=9%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhccC-cHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH-------------H----
Q 033770           14 EVTFVAVLTACARAR-LVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL-------------W----   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f-------------~----   74 (112)
                      ...|+..-..+.+.| ++++|+..++....   +.| +...|+-+-..+.+.|++++|.+.+             |    
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~---~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~  153 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ  153 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence            334555555555544 46777777776653   123 5666666666677777777777776             3    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      ..+...|+.++|...+++..+++|.+...+.
T Consensus       154 ~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~  184 (315)
T d2h6fa1         154 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWN  184 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHCCccHHHHH
Confidence            4566667777777777777777776655443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0034  Score=38.20  Aligned_cols=88  Identities=9%  Similarity=-0.100  Sum_probs=74.1

Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH----------------
Q 033770           10 LRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL----------------   73 (112)
Q Consensus        10 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f----------------   73 (112)
                      ..|+..+|..+=..+.+.|++++|...|++..+ .. +-+...|.-+=..|.+.|++++|.+.|                
T Consensus        32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~-ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~  109 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK  109 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH-Hh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHH
Confidence            367888888898899999999999999999885 33 227788888999999999999999887                


Q ss_pred             -------------H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           74 -------------W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        74 -------------~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                                   |    ..+.+.|++++|.+.++...+..|.
T Consensus       110 ~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                         1    5567899999999999988876665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0008  Score=44.16  Aligned_cols=92  Identities=11%  Similarity=0.070  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcC-ChhHHHHHH-------------H----
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAG-LLSEANEFL-------------W----   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~f-------------~----   74 (112)
                      .-.|+.+=..+.+.+..++|+.++++.++   +.| +...|+-.-..+.+.| ++++|.+.+             |    
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~---lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            34555565667788899999999999985   356 5667777777777776 589999998             4    


Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..+.+.|+.++|...++++.+.+|.+...+.-+.
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~  153 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ  153 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence            7778889999999999999999999877665443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.23  E-value=0.0017  Score=41.87  Aligned_cols=75  Identities=17%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH--------------------------------
Q 033770           26 RARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL--------------------------------   73 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------------------   73 (112)
                      +.|++++|...+++..+  --+-|...+..+...|++.|++++|.+.+                                
T Consensus         8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            44666666666666653  11225566666666666666666666666                                


Q ss_pred             -------------H-------HHHHhhCChhHHHHHHHHHHhcCCCCCc
Q 033770           74 -------------W-------SACKIHGAVKLSHEVGKRLLELQPEHCR  102 (112)
Q Consensus        74 -------------~-------~~~~~~g~~~~a~~~~~~m~~~~~~~~~  102 (112)
                                   |       ..+...|+.++|.+++++..+..|..+.
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence                         2       5567789999999999999888877654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.21  E-value=0.0018  Score=38.59  Aligned_cols=90  Identities=9%  Similarity=0.007  Sum_probs=64.9

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhhccCCCc--C-----------HHHHHHHHHHHHhcCChhHHHHHH-----------
Q 033770           18 VAVLTACARARLVELGLELFHSLLGEFEVVP--I-----------MEHYGCVVDLLGRAGLLSEANEFL-----------   73 (112)
Q Consensus        18 ~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p--~-----------~~~~~~li~~~~~~g~~~~A~~~f-----------   73 (112)
                      .-.=..+.+.|++++|...+.+...-....+  +           ...|+-+-.+|.+.|++++|.+.+           
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH
Confidence            3344567788999999999877653111111  1           122333555688999999999998           


Q ss_pred             --H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           74 --W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        74 --~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                        |    .++...|+.++|...|++..+++|+++.....+
T Consensus        99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence              2    888899999999999999999999887654443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00067  Score=40.82  Aligned_cols=64  Identities=14%  Similarity=0.055  Sum_probs=51.1

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           48 PIMEHYGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        48 p~~~~~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      |+....--.=..|.+.|++++|.+.|             |    .+|.+.|++++|...|++..+++|+.+..+..+..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            33444444446788999999999999             4    888999999999999999999999988777666544


Q ss_pred             c
Q 033770          111 H  111 (112)
Q Consensus       111 y  111 (112)
                      |
T Consensus        82 ~   82 (201)
T d2c2la1          82 Q   82 (201)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.08  E-value=0.0032  Score=36.92  Aligned_cols=84  Identities=13%  Similarity=0.018  Sum_probs=63.8

Q ss_pred             HHHHHH--HHHHhccCcHHHHHHHHHHhhhccCCCcC----------HHHHHHHHHHHHhcCChhHHHHHH---------
Q 033770           15 VTFVAV--LTACARARLVELGLELFHSLLGEFEVVPI----------MEHYGCVVDLLGRAGLLSEANEFL---------   73 (112)
Q Consensus        15 ~t~~~l--i~~~~~~~~~~~a~~~~~~m~~~~g~~p~----------~~~~~~li~~~~~~g~~~~A~~~f---------   73 (112)
                      .+|..+  -....+.|++++|...|++...-..-.|+          ...|+-+-.+|.+.|++++|.+-+         
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            456655  44555779999999999998741111122          357888889999999999999887         


Q ss_pred             -----------H--------HHHHhhCChhHHHHHHHHHHhcCC
Q 033770           74 -----------W--------SACKIHGAVKLSHEVGKRLLELQP   98 (112)
Q Consensus        74 -----------~--------~~~~~~g~~~~a~~~~~~m~~~~~   98 (112)
                                 |        .+|...|+.++|...|++..++.|
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                       1        777888999999999999887544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00068  Score=38.17  Aligned_cols=53  Identities=17%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             HHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           58 DLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        58 ~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ..+.+.|++++|.+.|             |    .++...|+.+.|...++...+.+|.++..+.-+..+
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHH
Confidence            3577889999999999             3    888899999999999999999999988777655543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0011  Score=39.08  Aligned_cols=52  Identities=15%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             HHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           59 LLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        59 ~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      .|.+.|++++|.+.|             |    ..|...|++++|...|++..+.+|.++..+..+..+
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            577999999999999             3    788899999999999999999999987766655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.73  E-value=0.0012  Score=36.80  Aligned_cols=55  Identities=15%  Similarity=-0.002  Sum_probs=46.4

Q ss_pred             HHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           56 VVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        56 li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      +-..+-+.|++++|.+.|             |    ..+.+.|+.++|+..+++..+.+|+++..+..|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~   93 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   93 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence            344678899999999999             3    788899999999999999999999988777666544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.61  E-value=0.0053  Score=37.13  Aligned_cols=82  Identities=13%  Similarity=0.018  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH--H-HHHHhh-C-Ch-hHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL--W-SACKIH-G-AV-KLSH   87 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f--~-~~~~~~-g-~~-~~a~   87 (112)
                      ..+..+..++.+.|++++|...+++...   +.| +...|..++.+|.+.|+..+|.+.|  . ..+... | ++ .+..
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~---~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            4567788889999999999999999875   234 8889999999999999999999997  2 322221 1 22 2345


Q ss_pred             HHHHHHHhcCCC
Q 033770           88 EVGKRLLELQPE   99 (112)
Q Consensus        88 ~~~~~m~~~~~~   99 (112)
                      .+++.+..-.|.
T Consensus       145 ~l~~~il~~~~~  156 (179)
T d2ff4a2         145 ALNERILRQQPL  156 (179)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHhCCCC
Confidence            666666654443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0015  Score=37.30  Aligned_cols=51  Identities=12%  Similarity=0.097  Sum_probs=42.7

Q ss_pred             HHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhh
Q 033770           58 DLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLS  108 (112)
Q Consensus        58 ~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~  108 (112)
                      ..|.+.|++++|.+.|             |    .+|.+.|+++.|...+++..+++|.++..+..+.
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3578889999999999             2    8889999999999999999998887766555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.022  Score=36.31  Aligned_cols=88  Identities=7%  Similarity=-0.010  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhh---ccCC-CcCHHHHHHHHHHHH-hcCChhHHHHHH---------------
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLG---EFEV-VPIMEHYGCVVDLLG-RAGLLSEANEFL---------------   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~g~-~p~~~~~~~li~~~~-~~g~~~~A~~~f---------------   73 (112)
                      ..+|+.+-..|.+.|++++|...+++...   ..|- ......+..+...|- ..|++++|.+.+               
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            35788888889999999999999887653   1111 112444555556664 469999999998               


Q ss_pred             ----H----HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           74 ----W----SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        74 ----~----~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                          |    ..+...|+.++|.+.+++.....|..+
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence                1    778888999999999999887666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.023  Score=30.38  Aligned_cols=65  Identities=18%  Similarity=0.138  Sum_probs=39.6

Q ss_pred             HHHhccCcHHHHHHHHHHhhhccC----CCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhc
Q 033770           22 TACARARLVELGLELFHSLLGEFE----VVPI-MEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        22 ~~~~~~~~~~~a~~~~~~m~~~~g----~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                      ..+.+.|++++|...|++..+...    ..++ ..+++-|-                 .++.+.|+.++|...+++..++
T Consensus        13 ~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg-----------------~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLS-----------------YAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHH-----------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHh-----------------hHHHhcCChHHHHHHHHHHHHh
Confidence            455677889999888887663110    1111 11222222                 5666777777777777887777


Q ss_pred             CCCCCcc
Q 033770           97 QPEHCRR  103 (112)
Q Consensus        97 ~~~~~~~  103 (112)
                      +|+++..
T Consensus        76 ~P~~~~a   82 (95)
T d1tjca_          76 DPEHQRA   82 (95)
T ss_dssp             CTTCHHH
T ss_pred             CcCCHHH
Confidence            7776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.058  Score=30.24  Aligned_cols=83  Identities=12%  Similarity=-0.003  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHHHhccC---cHHHHHHHHHHhhhccCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHH
Q 033770           11 RANEVTFVAVLTACARAR---LVELGLELFHSLLGEFEVVPI-MEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLS   86 (112)
Q Consensus        11 ~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a   86 (112)
                      +.+.-++..+=.++.+++   +.++|..++++... ..-.|+ ...+.-|=.+|.+.|++++|.+.|=.+....-+..+|
T Consensus        30 p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          30 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            345567777777777644   55679999999875 444444 3467778889999999999999952555555566667


Q ss_pred             HHHHHHHH
Q 033770           87 HEVGKRLL   94 (112)
Q Consensus        87 ~~~~~~m~   94 (112)
                      ..+...+.
T Consensus       109 ~~l~~~I~  116 (122)
T d1nzna_         109 KELERLID  116 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.45  E-value=0.038  Score=32.00  Aligned_cols=59  Identities=14%  Similarity=0.038  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFLW   74 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~   74 (112)
                      ..+|+.+-.+|.+.|++++|...+..... .. +.++..|.-+-.+|.+.|++++|...|-
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~-~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~  125 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK-ID-KNNVKALYKLGVANMYFGFLEEAKENLY  125 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc-cc-chhhhhhHHhHHHHHHcCCHHHHHHHHH
Confidence            35778888889999999999999999875 32 3388999999999999999999999983

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.23  E-value=0.14  Score=30.54  Aligned_cols=82  Identities=18%  Similarity=0.090  Sum_probs=62.2

Q ss_pred             CHHHHHHHH---HHHhccCcHHHHHHHHHHhhhcc-C-CCcCH------------------HHHHHHHHHHHhcCChhHH
Q 033770           13 NEVTFVAVL---TACARARLVELGLELFHSLLGEF-E-VVPIM------------------EHYGCVVDLLGRAGLLSEA   69 (112)
Q Consensus        13 ~~~t~~~li---~~~~~~~~~~~a~~~~~~m~~~~-g-~~p~~------------------~~~~~li~~~~~~g~~~~A   69 (112)
                      |...|-.++   ......|++++|.+.+.+...-. | +.++.                  ..+..+...+.+.|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            444455444   35678899999999988876411 1 11221                  4567889999999999999


Q ss_pred             HHHH-------------H----HHHHhhCChhHHHHHHHHHH
Q 033770           70 NEFL-------------W----SACKIHGAVKLSHEVGKRLL   94 (112)
Q Consensus        70 ~~~f-------------~----~~~~~~g~~~~a~~~~~~m~   94 (112)
                      .+.+             |    .++...|+..+|.+.|+.+.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999             3    89999999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.079  Score=31.08  Aligned_cols=56  Identities=5%  Similarity=-0.073  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+|+.+-.+|.+.|++++|...++.... .  .| ++..|.-+-.+|.+.|++++|.+.|
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~-~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~  119 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALE-L--DSNNEKGLSRRGEAHLAVNDFELARADF  119 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhh-c--cccchhhhHHHHHHHHHhhhHHHHHHHH
Confidence            4677777888999999999999999885 3  35 8888899999999999999999998

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.25  Score=30.58  Aligned_cols=80  Identities=10%  Similarity=-0.071  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhhccCCC---cCHHHHHHHHHHHHhcCChhHHHHHH-------------------
Q 033770           16 TFVAVLTACARARLVELGLELFHSLLGEFEVV---PIMEHYGCVVDLLGRAGLLSEANEFL-------------------   73 (112)
Q Consensus        16 t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~f-------------------   73 (112)
                      .+..+...+...|+.+.|...++.... ....   .....+..+-..|...|++++|.+.+                   
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  293 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN  293 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence            455566677788999999998887663 2211   23445566788899999999999888                   


Q ss_pred             H----HHHHhhCChhHHHHHHHHHHhc
Q 033770           74 W----SACKIHGAVKLSHEVGKRLLEL   96 (112)
Q Consensus        74 ~----~~~~~~g~~~~a~~~~~~m~~~   96 (112)
                      |    ..+...|+.++|.+.+++..++
T Consensus       294 ~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         294 LLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            1    6778889999999999887653

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.52  E-value=0.062  Score=29.50  Aligned_cols=44  Identities=16%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             cHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           29 LVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        29 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +.-+..+-+..+-. +.+.|++.+-.+-++++-|..++.-|.++|
T Consensus        21 D~we~rrgmN~l~~-~DlVPeP~Ii~aALrAcRRvND~alAVR~l   64 (105)
T d1v54e_          21 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRIL   64 (105)
T ss_dssp             CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33445555555554 667777777777777777777777777776

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.16  Score=32.08  Aligned_cols=86  Identities=8%  Similarity=-0.055  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHH-hccCcHHHHHHHHHHhhh---ccCCCc-CHHHHHHHHHHHHhcCChhHHHHHH---------------
Q 033770           14 EVTFVAVLTAC-ARARLVELGLELFHSLLG---EFEVVP-IMEHYGCVVDLLGRAGLLSEANEFL---------------   73 (112)
Q Consensus        14 ~~t~~~li~~~-~~~~~~~~a~~~~~~m~~---~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f---------------   73 (112)
                      ..++..+-..+ ...|++++|...+++...   ..+-.+ -..++.-+...|.+.|++++|.+.|               
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  196 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence            34455555566 456999999999987653   112222 2445677889999999999999998               


Q ss_pred             -----H----HHHHhhCChhHHHHHHHHHHhcCCC
Q 033770           74 -----W----SACKIHGAVKLSHEVGKRLLELQPE   99 (112)
Q Consensus        74 -----~----~~~~~~g~~~~a~~~~~~m~~~~~~   99 (112)
                           |    -.+...|+.+.|...++...+..|.
T Consensus       197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence                 1    3344578999999999988877664

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.26  E-value=0.16  Score=29.47  Aligned_cols=59  Identities=5%  Similarity=-0.174  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           13 NEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        13 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      +...|+.+=.++.+.|++++|+..+.+..+ .. +-+...|.-+-.+|.+.|++++|.+.|
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~  134 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE-ID-PSNTKALYRRAQGWQGLKEYDQALADL  134 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhh-hh-hhhhhHHHhHHHHHHHccCHHHHHHHH
Confidence            444666777788899999999999999875 22 237888999999999999999999998

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.28  Score=30.39  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=54.4

Q ss_pred             HhccCcHHHHHHHHHHhhhccCCCcC------HHHHHHHHHHHHhcCChhHHHHHH-----------------H------
Q 033770           24 CARARLVELGLELFHSLLGEFEVVPI------MEHYGCVVDLLGRAGLLSEANEFL-----------------W------   74 (112)
Q Consensus        24 ~~~~~~~~~a~~~~~~m~~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~f-----------------~------   74 (112)
                      +...|++++|.+++++... .  .|+      ...++.+-..|...|++++|.+.|                 +      
T Consensus        22 ~~~~g~~~~A~~~~~~aL~-~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALE-E--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-T--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHh-h--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            4688999999999998764 2  232      345667778899999999999998                 0      


Q ss_pred             HHHHhhCChhHHHHHHHHHHh
Q 033770           75 SACKIHGAVKLSHEVGKRLLE   95 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~   95 (112)
                      ..+...|++..+...+.+...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~  119 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQ  119 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            566778999999998888764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.86  E-value=0.038  Score=35.58  Aligned_cols=55  Identities=15%  Similarity=-0.019  Sum_probs=29.9

Q ss_pred             CHHHHHHHH-HHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHH
Q 033770           13 NEVTFVAVL-TACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEA   69 (112)
Q Consensus        13 ~~~t~~~li-~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A   69 (112)
                      +...+...+ ..+...+..++|...++...+ ... -+...|+-+-..+.+.|++++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-~~p-~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNF-SNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-TTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred             hhhhhhhHHHHHHHhccccHHHHHHHHHHHH-cCC-CCHHHHHHHHHHHHHhcCHHHH
Confidence            344444333 344456667777777766653 211 2555666666666666655544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.82  E-value=0.076  Score=34.04  Aligned_cols=81  Identities=20%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             ccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCC--hhHHHHHH-------------H-----HHHHhhCChh
Q 033770           26 RARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGL--LSEANEFL-------------W-----SACKIHGAVK   84 (112)
Q Consensus        26 ~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~--~~~A~~~f-------------~-----~~~~~~g~~~   84 (112)
                      ..|.+++|+.+++...+.   .| +...|..+-.++...++  +++|...+             |     ..+...+..+
T Consensus        85 ~~~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          85 SAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence            445688999999998752   34 66677777666666654  78888877             2     4556678899


Q ss_pred             HHHHHHHHHHhcCCCCCcchhhhhc
Q 033770           85 LSHEVGKRLLELQPEHCRRYVVLSN  109 (112)
Q Consensus        85 ~a~~~~~~m~~~~~~~~~~~~~l~~  109 (112)
                      .|...++...+.+|.+...+..+..
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~  186 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSC  186 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999988776665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=93.23  E-value=0.26  Score=28.53  Aligned_cols=57  Identities=11%  Similarity=-0.021  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 033770           15 VTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        15 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      .+|+.+=.++.+.|++++|...++...+ . -+.+...|.-+-.+|...|++++|.+.|
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~-l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~  121 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALG-L-DSANEKGLYRRGEAQLLMNEFESAKGDF  121 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhh-c-ccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3455666678899999999999999885 2 2348888999999999999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.18  Score=26.54  Aligned_cols=33  Identities=15%  Similarity=-0.022  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcC
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGEFEVVPI   49 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~   49 (112)
                      ..+++.|=.++.+.|++++|...+   .+...+.|+
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y---~~aL~l~P~   78 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLT---KKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH---HHHHHHCTT
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHH---HHHHHhCcC
Confidence            356778888888999999887774   333456664

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.42  E-value=0.043  Score=31.57  Aligned_cols=76  Identities=11%  Similarity=0.005  Sum_probs=51.8

Q ss_pred             hccCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcCCCCCcc
Q 033770           25 ARARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRR  103 (112)
Q Consensus        25 ~~~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  103 (112)
                      -+.+.+++|...++....   +.| +...+.-+=.+|.+.+++..+.+       ..+.+++|...|++..+++|+++..
T Consensus         8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e-------~~~~~~~Ai~~~~kAl~l~P~~~~a   77 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD-------AKQMIQEAITKFEEALLIDPKKDEA   77 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH-------HHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhH-------HHHHHHHHHHHHHHHHHhcchhhHH
Confidence            455678999999999874   235 56666666666666655554332       3456788888999888888988776


Q ss_pred             hhhhhcc
Q 033770          104 YVVLSNV  110 (112)
Q Consensus       104 ~~~l~~~  110 (112)
                      +.-+-++
T Consensus        78 ~~~lG~~   84 (145)
T d1zu2a1          78 VWCIGNA   84 (145)
T ss_dssp             HHHHHHH
T ss_pred             HhhHHHH
Confidence            6655443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.16  E-value=0.057  Score=34.44  Aligned_cols=48  Identities=25%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             HHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhh
Q 033770           60 LGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVL  107 (112)
Q Consensus        60 ~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l  107 (112)
                      ..+.|++++|.+.+             +    ..++..|++++|...++...+++|+....+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34679999999999             2    889999999999999999999999766544433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.45  E-value=0.23  Score=28.25  Aligned_cols=72  Identities=14%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             cCcHHHHHHHHHHhhhccCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhCChhHHHHHHHHHHhcCCCCCcchh
Q 033770           27 ARLVELGLELFHSLLGEFEVVP-IMEHYGCVVDLLGRAGLLSEANEFLWSACKIHGAVKLSHEVGKRLLELQPEHCRRYV  105 (112)
Q Consensus        27 ~~~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  105 (112)
                      .+.+++|...|++..+   +.| +...|..+=..|...|++..      ......++++.|.+.|++..+++|++.....
T Consensus        54 ~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~~y~~~g~~~~------~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~  124 (145)
T d1zu2a1          54 KQMIQEAITKFEEALL---IDPKKDEAVWCIGNAYTSFAFLTP------DETEAKHNFDLATQFFQQAVDEQPDNTHYLK  124 (145)
T ss_dssp             HHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---hcchhhHHHhhHHHHHHHcccchh------hHHHHHHhHHHhhhhhhcccccCCCHHHHHH
Confidence            3556889999998875   345 66777777677766554322      1112234567788888888888887765444


Q ss_pred             hh
Q 033770          106 VL  107 (112)
Q Consensus       106 ~l  107 (112)
                      .|
T Consensus       125 ~L  126 (145)
T d1zu2a1         125 SL  126 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}

class: All alpha proteins
fold: Ribbon-helix-helix
superfamily: Ribbon-helix-helix
family: Arc/Mnt-like phage repressors
domain: Arc repressor
species: Salmonella bacteriophage P22 [TaxId: 10754]

Probab=88.49  E-value=0.44  Score=20.17  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=25.2

Q ss_pred             HHHHHHHhhhccCCCcCHHHHHHHHHHHHhcCCh
Q 033770           33 GLELFHSLLGEFEVVPIMEHYGCVVDLLGRAGLL   66 (112)
Q Consensus        33 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~   66 (112)
                      .+.+..+..++.|...+..+|..++..+-+-|++
T Consensus         3 vldlvrkvaeeng~s~ns~iy~~vmes~kkegri   36 (36)
T d1u9pa1           3 VLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI   36 (36)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCcchhHHHHHHHHHHHHHccCC
Confidence            3455555555678888889999998888887763

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.41  E-value=0.64  Score=30.52  Aligned_cols=37  Identities=14%  Similarity=0.066  Sum_probs=22.7

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhccc
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNVH  111 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~y  111 (112)
                      ..|-..|.++....+++......+.++..++-|..+|
T Consensus       107 ~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~ly  143 (336)
T d1b89a_         107 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  143 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence            5566667777777777766555555555555555444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.43  Score=32.58  Aligned_cols=61  Identities=8%  Similarity=0.005  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHH-----------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcchhhhhcc
Q 033770           50 MEHYGCVVDLLGRAGLLSEANEFL-----------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRYVVLSNV  110 (112)
Q Consensus        50 ~~~~~~li~~~~~~g~~~~A~~~f-----------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l~~~  110 (112)
                      ...+..+=..+.+.|+.++|.+.+           +    ..+...|++++|...+++..++.|++...|.-|..+
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL  195 (497)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            334444444555556655555443           1    445555666666666666666666666555544433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.48  E-value=0.53  Score=26.56  Aligned_cols=27  Identities=15%  Similarity=0.228  Sum_probs=15.7

Q ss_pred             HHHHhhCChhHHHHHHHHHHhcCCCCC
Q 033770           75 SACKIHGAVKLSHEVGKRLLELQPEHC  101 (112)
Q Consensus        75 ~~~~~~g~~~~a~~~~~~m~~~~~~~~  101 (112)
                      -+|.+.|+.++|.+.++.+.+.+|++.
T Consensus        81 v~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          81 IGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            455556666666666666666666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.85  E-value=1.8  Score=24.27  Aligned_cols=60  Identities=17%  Similarity=-0.041  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhhhc----cCCCcC-----HHHHHHHHHHHHhcCChhHHHHHH
Q 033770           14 EVTFVAVLTACARARLVELGLELFHSLLGE----FEVVPI-----MEHYGCVVDLLGRAGLLSEANEFL   73 (112)
Q Consensus        14 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~f   73 (112)
                      ..+|+.+=.++.+.|++++|..-+++..+-    ....++     ...++-+=.+|.+.|++++|.+.|
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~  123 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  123 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999888887631    112222     224555678899999999999997

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.77  E-value=2.1  Score=23.19  Aligned_cols=52  Identities=19%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             HhhcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhccCCCcCHHHHHHHHH
Q 033770            5 MYEKGLRANEVTFVAVLTACARARLVELGLELFHSLLGEFEVVPIMEHYGCVVD   58 (112)
Q Consensus         5 M~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~g~~p~~~~~~~li~   58 (112)
                      +-...+.|+.....+.|+||-+.+++..|.++|+..+.  .+.++-..|..++.
T Consensus        32 l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~--K~~~~k~~y~yilq   83 (105)
T d1v54e_          32 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ   83 (105)
T ss_dssp             HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH
T ss_pred             HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence            33456789999999999999999999999999999885  34344556766654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.11  E-value=0.82  Score=31.10  Aligned_cols=52  Identities=10%  Similarity=-0.037  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHH-------------H----HHHHhhCChhHHHHHHHHHHhcCCCCCcch
Q 033770           53 YGCVVDLLGRAGLLSEANEFL-------------W----SACKIHGAVKLSHEVGKRLLELQPEHCRRY  104 (112)
Q Consensus        53 ~~~li~~~~~~g~~~~A~~~f-------------~----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  104 (112)
                      +..+=+.+...|++++|.+.+             |    ..+...|+..+|...|.+.....|+.+..+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~  223 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS  223 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence            344445566666666666666             2    444556666666666666665555444433