Citrus Sinensis ID: 033800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDVT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHccccccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
mdspwaiqpsystlsistsrfsaessgtdsfgsrmspitggeaschspdldsphlEARENAMMRYKEKKKArrqdkqiqypsrKARADARKRVQGRflktegydsdatdvt
Flexible Loop (DISEMBL)
MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEkkkarrqdkqiqypsrkaradarkrvqgrflktegydsdatdvt
Low Complexity Region (SEG)
MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDVT
Disordered region (IsUnstruct)
***************************************************************************************************************
Disordered Region (DISOPRED)
************************************************************************RQDKQIQYPSRKARADARKRVQGRFL*************
Disordered Region (DISEMBL)
MDSPWAIQPSYSTLSIST**************SRMSPITGGEASCHSPDLDSPHLEARENAMMRY**************************RVQGRFLKTEG*********
Disordered Region (DISPRO)
***************************************************S*H*EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGY********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9SSE5	372	Zinc finger protein CONST	yes	no	0.900	0.268	0.458	3e-14
Q9LUA9	373	Zinc finger protein CONST	no	no	0.558	0.166	0.575	5e-13
O22800	402	Zinc finger protein CONST	no	no	0.396	0.109	0.659	2e-10
Q9LJ44	364	Zinc finger protein CONST	no	no	0.504	0.153	0.578	8e-10
Q9C7E8	433	Zinc finger protein CONST	no	no	0.396	0.101	0.659	2e-09
O82256	332	Zinc finger protein CONST	no	no	0.801	0.268	0.346	1e-08
Q9FDX8	395	Zinc finger protein HD1 O	no	no	0.378	0.106	0.571	7e-07
O50055	355	Zinc finger protein CONST	no	no	0.459	0.143	0.490	7e-07
Q96502	347	Zinc finger protein CONST	no	no	0.378	0.121	0.571	8e-07
Q940T9	362	Zinc finger protein CONST	no	no	0.540	0.165	0.4	1e-06

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 5   WAIQPSYSTLSISTSRFSAESSGTD--SFGSRMSPITGGEASCHSPDLD----SPHLEAR 58
           +A +P++S +S S    + ESS  D    G+  S    GE   + P L       H   R
Sbjct: 258 FASKPAHSNISFSG--VTGESSAGDFQECGASSSIQLSGEPPWYPPTLQDNNACSHSVTR 315

Query: 59  ENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
            NA+MRYKEKKKAR+ DK+++Y SRKARAD R+RV+GRF+K  E YD D
Sbjct: 316 NNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 4/66 (6%)

Query: 45  CHSPDLD---SPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT- 100
           CH    D   S H   R NA+MRYKEKKKAR+ DK+++Y SRK RAD R+RV+GRF+K+ 
Sbjct: 300 CHPTAQDIIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 359

Query: 101 EGYDSD 106
           E YD D
Sbjct: 360 EAYDYD 365

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 56  EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
           + R+NAM RYKEKKK RR DK I+Y +RKARA+ R RV+GRF+K
Sbjct: 355 QNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 56  EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSDATDVT 111
           +AR  A +RYKEKK  R   KQI+Y SRKARAD RKRV+GRF+K  + YD D +  T
Sbjct: 305 QARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDSYDYDPSSPT 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 56  EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
           + R +AM RYKEK+K RR DK I+Y SRKARAD R RV+GRF+K
Sbjct: 383 QNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVK 426

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 11  YSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEA------------R 58
           Y +L  + S    +    D   S M P++G    C    +  P + +            R
Sbjct: 228 YCSLLKNLSESDEKPENVDRESSVMVPVSGCLNRCEEETVMVPVITSTRSMTHEINSLER 287

Query: 59  ENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
            +A+ RYKEKKK+RR +K I+Y SRK RA++R R++GRF K
Sbjct: 288 NSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 58  RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
           RE  ++RY+EKKKAR+ +K I+Y +RKA A+AR R++GRF K
Sbjct: 326 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAK 367

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 58  RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDAT 108
           RE  ++RY+EKKK R+ +K I+Y SRKA A+ R R++GRF K +  D +A 
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEAN 336

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 58  RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
           RE  ++RY+EKKK R+ DK I+Y SRKA A+ R R++GRF K
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 15/75 (20%)

Query: 25  SSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKKARRQDKQIQYPSRK 84
           +SG D    R  P+T  E               RE  +MRY+EK+K R+ +K I+Y SRK
Sbjct: 277 TSGADPGTQRAVPLTSAE---------------REARVMRYREKRKNRKFEKTIRYASRK 321

Query: 85  ARADARKRVQGRFLK 99
           A A+ R R++GRF K
Sbjct: 322 AYAEMRPRIKGRFAK 336

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
359472914	133	PREDICTED: zinc finger protein CONSTANS-	0.981	0.819	0.531	1e-20
297737757	153	unnamed protein product [Vitis vinifera]	0.981	0.712	0.531	1e-20
224099423	497	predicted protein [Populus trichocarpa]	0.837	0.187	0.572	6e-19
116787086	555	unknown [Picea sitchensis]	0.945	0.189	0.485	3e-16
255570685	315	hypothetical protein RCOM_0577390 [Ricin	0.720	0.253	0.592	9e-16
297739315	338	unnamed protein product [Vitis vinifera]	0.864	0.284	0.474	1e-12
359485671	448	PREDICTED: putative zinc finger protein	0.864	0.214	0.474	1e-12
15231491	372	zinc finger protein CONSTANS-LIKE 9 [Ara	0.900	0.268	0.458	1e-12
224093218	332	predicted protein [Populus trichocarpa]	0.864	0.289	0.474	5e-12
297795479	263	hypothetical protein ARALYDRAFT_357028 [	0.558	0.235	0.575	2e-11

>gi|359472914|ref|XP_003631214.1| PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 2/111 (1%)

Query: 1   MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEAREN 60
           ++S   I+PS+S +S S S  S ESS TD   S +SP T       S DL+S H EAREN
Sbjct: 22  VNSHCPIRPSFSAMSFSVSILSPESSSTDYLDSGLSPTTTRGPPFDSSDLESAHSEAREN 81

Query: 61  AMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDVT 111
           AMMRYKEKKK R  +KQI++  RK  AD RKRV+G+ LK EGY+SD+ + T
Sbjct: 82  AMMRYKEKKKVRMNEKQIRHTPRK--ADPRKRVKGQSLKAEGYESDSVNAT 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737757|emb|CBI26958.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 2/111 (1%)

Query: 1   MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEAREN 60
           ++S   I+PS+S +S S S  S ESS TD   S +SP T       S DL+S H EAREN
Sbjct: 42  VNSHCPIRPSFSAMSFSVSILSPESSSTDYLDSGLSPTTTRGPPFDSSDLESAHSEAREN 101

Query: 61  AMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDVT 111
           AMMRYKEKKK R  +KQI++  RK  AD RKRV+G+ LK EGY+SD+ + T
Sbjct: 102 AMMRYKEKKKVRMNEKQIRHTPRK--ADPRKRVKGQSLKAEGYESDSVNAT 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099423|ref|XP_002311478.1| predicted protein [Populus trichocarpa] gi|222851298|gb|EEE88845.1| predicted protein [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 65/96 (67%), Gaps = 3/96 (3%)

Query: 1   MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSP-ITGGEASCHSPDLDSPHLEARE 59
           +D    I+  YS  SIS+    AES   +   S +SP I+ GEASC+SPDL+  H EARE
Sbjct: 404 LDPAQTIRSPYSRYSISSD--GAESRSNEYLDSELSPYISNGEASCYSPDLEDAHTEARE 461

Query: 60  NAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQG 95
           NAMMRYKEKKKAR QDKQI+Y SRK + D RKR  G
Sbjct: 462 NAMMRYKEKKKARMQDKQIRYTSRKPKNDVRKRGNG 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116787086|gb|ABK24370.1| unknown [Picea sitchensis]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 7   IQPSYSTLSISTSRFSAESSGTDSFGSRMSPI-TGGEASCHSPDLDSPHLEARENAMMRY 65
           +QP+ ++L+ S S +S + +  D     +SPI   GE    S + DS  L AR NAM+RY
Sbjct: 446 VQPAPASLAQSLSSYSGDGNAADYHDCDVSPIFLKGEPPWGSTNTDSAFLNARGNAMIRY 505

Query: 66  KEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSDATDVT 111
           KEKKKAR  +K+I+Y SRKARAD RKRV+GRF+K  E +D D    T
Sbjct: 506 KEKKKARMYEKKIRYASRKARADVRKRVKGRFVKAGEAFDYDPLATT 552

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570685|ref|XP_002526297.1| hypothetical protein RCOM_0577390 [Ricinus communis] gi|223534378|gb|EEF36086.1| hypothetical protein RCOM_0577390 [Ricinus communis]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 1/81 (1%)

Query: 1   MDSPWAIQPSYSTLSISTSRFSAESSGTDSFGSRMSP-ITGGEASCHSPDLDSPHLEARE 59
           +DSP  I+PSYS +S S SRFSAE SGT    S +SP ITG E S HS DL+  H EA+E
Sbjct: 222 LDSPRTIRPSYSAMSFSISRFSAEGSGTKYVDSGLSPYITGTEVSYHSSDLEGAHSEAKE 281

Query: 60  NAMMRYKEKKKARRQDKQIQY 80
           NAM+RYKEKKKAR    +I +
Sbjct: 282 NAMVRYKEKKKARTYGPRIGF 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739315|emb|CBI28966.3| unnamed protein product [Vitis vinifera]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 11  YSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKK 70
           ++++S+S S  + ESS  D     +SP      S  + +LD+   +AR+ A MRY EKKK
Sbjct: 235 HASVSLSLSNVTGESSAADYQDCGLSPAFLAGESPWTSNLDAHCPQARDKAKMRYNEKKK 294

Query: 71  ARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
            R   KQI+Y SRKARAD RKRV+GRF+K  E YD D
Sbjct: 295 TRTFGKQIRYASRKARADTRKRVRGRFVKAGEAYDYD 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485671|ref|XP_002274384.2| PREDICTED: putative zinc finger protein CONSTANS-LIKE 11-like [Vitis vinifera]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 11  YSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKK 70
           ++++S+S S  + ESS  D     +SP      S  + +LD+   +AR+ A MRY EKKK
Sbjct: 345 HASVSLSLSNVTGESSAADYQDCGLSPAFLAGESPWTSNLDAHCPQARDKAKMRYNEKKK 404

Query: 71  ARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
            R   KQI+Y SRKARAD RKRV+GRF+K  E YD D
Sbjct: 405 TRTFGKQIRYASRKARADTRKRVRGRFVKAGEAYDYD 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231491|ref|NP_187422.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|42572309|ref|NP_974250.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|79313159|ref|NP_001030659.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|186509893|ref|NP_001118599.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|17433084|sp|Q9SSE5.1|COL9_ARATH RecName: Full=Zinc finger protein CONSTANS-LIKE 9 gi|6466948|gb|AAF13083.1|AC009176_10 unknown protein [Arabidopsis thaliana] gi|119360037|gb|ABL66747.1| At3g07650 [Arabidopsis thaliana] gi|222423327|dbj|BAH19639.1| AT3G07650 [Arabidopsis thaliana] gi|332641059|gb|AEE74580.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|332641060|gb|AEE74581.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|332641061|gb|AEE74582.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana] gi|332641062|gb|AEE74583.1| zinc finger protein CONSTANS-LIKE 9 [Arabidopsis thaliana]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 5   WAIQPSYSTLSISTSRFSAESSGTD--SFGSRMSPITGGEASCHSPDLD----SPHLEAR 58
           +A +P++S +S S    + ESS  D    G+  S    GE   + P L       H   R
Sbjct: 258 FASKPAHSNISFSG--VTGESSAGDFQECGASSSIQLSGEPPWYPPTLQDNNACSHSVTR 315

Query: 59  ENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
            NA+MRYKEKKKAR+ DK+++Y SRKARAD R+RV+GRF+K  E YD D
Sbjct: 316 NNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093218|ref|XP_002309838.1| predicted protein [Populus trichocarpa] gi|222852741|gb|EEE90288.1| predicted protein [Populus trichocarpa]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 11  YSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKK 70
           +S++S+  S    ESS  D     +SP+     S     LD+   +AR+ A MRY EKKK
Sbjct: 229 HSSMSLPLSNIIGESSAADYQDCGLSPLFLTGESPWESHLDASSPQARDKAKMRYNEKKK 288

Query: 71  ARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
            R   KQI+Y SRKARAD RKRV+GRF+K  E YD D
Sbjct: 289 TRTFSKQIRYASRKARADTRKRVKGRFVKAGEAYDYD 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795479|ref|XP_002865624.1| hypothetical protein ARALYDRAFT_357028 [Arabidopsis lyrata subsp. lyrata] gi|297311459|gb|EFH41883.1| hypothetical protein ARALYDRAFT_357028 [Arabidopsis lyrata subsp. lyrata]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 4/66 (6%)

Query: 45  CHSPDLD---SPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT- 100
           CH    D   S H   R NA+MRYKEKKKAR+ DK+++Y SRK RAD R+RV+GRF+K+ 
Sbjct: 190 CHPTAQDIIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 249

Query: 101 EGYDSD 106
           E YD D
Sbjct: 250 EAYDYD 255

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.900	0.268	0.467	8.5e-16
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.945	0.281	0.434	1.5e-14
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.837	0.281	0.431	2.1e-11
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.792	0.241	0.440	7.7e-11
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.828	0.212	0.414	3e-10
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.378	0.104	0.690	4.3e-10
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.540	0.180	0.5	7.6e-09
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.900	0.340	0.330	9.3e-09
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.765	0.215	0.413	3.8e-08
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.765	0.208	0.413	4e-08

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 8.5e-16, P = 8.5e-16
 Identities = 51/109 (46%), Positives = 67/109 (61%)

Query:     5 WAIQPSYSTLSISTSRFSAESSGTD--SFGSRMSPITGGEASCHSPDLDS----PHLEAR 58
             +A +P++S  +IS S  + ESS  D    G+  S    GE   + P L       H   R
Sbjct:   258 FASKPAHS--NISFSGVTGESSAGDFQECGASSSIQLSGEPPWYPPTLQDNNACSHSVTR 315

Query:    59 ENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
              NA+MRYKEKKKAR+ DK+++Y SRKARAD R+RV+GRF+K  E YD D
Sbjct:   316 NNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 50/115 (43%), Positives = 70/115 (60%)

Query:     5 WAIQPSYSTLSISTSRFSAESSGTD--SFG-SRMSPITGG-EASCHSPDLD---SPHLEA 57
             ++ +P++S  +IS S  + ES+  D    G S M  ++   +  CH    D   S H   
Sbjct:   258 YSSKPAHS--NISFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQDIIASSHATT 315

Query:    58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSDATDVT 111
             R NA+MRYKEKKKAR+ DK+++Y SRK RAD R+RV+GRF+K+ E YD D    T
Sbjct:   316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDPMSPT 370

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 41/95 (43%), Positives = 58/95 (61%)

Query:    14 LSISTSRFSAESSGTDSFGSRMSP-ITGGEASCHSPDLDSPHLEARENAMMRYKEKKKAR 72
             +S+S S  + ES+ TD     +SP    G++   S    S + + R+ A  RYK+KK  R
Sbjct:   231 MSLSMSNLTGESNATDYQDCGISPGFLIGDSPWESNVEVSFNPKLRDEAKKRYKQKKSKR 290

Query:    73 RQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
                KQI+Y SRKARAD RKRV+GRF+K+ E ++ D
Sbjct:   291 MFGKQIRYASRKARADTRKRVKGRFVKSGETFEYD 325

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 7.7e-11, P = 7.7e-11
 Identities = 41/93 (44%), Positives = 54/93 (58%)

Query:    22 SAESSGTDSFGSRMSP-ITGGEASCHSP-DLDSPHLEARENAMMRYKEKKKARRQDKQIQ 79
             + E++  D     MSP     EA   +  ++  P  +AR  A +RYKEKK  R   KQI+
Sbjct:   271 TGENNAADYQDCGMSPGFIMSEAPWETNFEVSCP--QARNEAKLRYKEKKLKRSFGKQIR 328

Query:    80 YPSRKARADARKRVQGRFLKT-EGYDSDATDVT 111
             Y SRKARAD RKRV+GRF+K  + YD D +  T
Sbjct:   329 YASRKARADTRKRVKGRFVKAGDSYDYDPSSPT 361

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 41/99 (41%), Positives = 53/99 (53%)

Query:     7 IQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDL-----DSPHL-EAREN 60
             +QP+ S  +     F +E     S     +    G  SC +  L     D   L + R +
Sbjct:   329 VQPTKSESNNRPITFGSEKGSNSSSDLHFTEHIAG-TSCKTTRLVATKADLERLAQNRGD 387

Query:    61 AMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
             AM RYKEK+K RR DK I+Y SRKARAD R RV+GRF+K
Sbjct:   388 AMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVK 426

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query:    58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
             R+NAM RYKEKKK RR DK I+Y +RKARA+ R RV+GRF+K
Sbjct:   357 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query:    35 MSP-ITGGEASCHSPDLDSPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRV 93
             M P IT   +  H  +++S  LE R +A+ RYKEKKK+RR +K I+Y SRK RA++R R+
Sbjct:   268 MVPVITSTRSMTH--EINS--LE-RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRI 322

Query:    94 QGRFLK 99
             +GRF K
Sbjct:   323 RGRFAK 328

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 35/106 (33%), Positives = 60/106 (56%)

Query:    10 SYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEA----RENAMMRY 65
             S S +S     F  ++  T +    + P +GG  +    + ++P ++     RE  ++RY
Sbjct:   178 SASKISQQGFNFINQTVSTRTIDVPLVPESGG-VTAEMTNTETPAVQLSPAEREARVLRY 236

Query:    66 KEKKKARRQDKQIQYPSRKARADARKRVQGRFLK-TEGYDSDATDV 110
             +EK+K R+ +K I+Y SRKA A+ R R++GRF K T+  ++D  DV
Sbjct:   237 REKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSRENDGGDV 282

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 38/92 (41%), Positives = 52/92 (56%)

Query:    15 SISTSRFSA----ESSGTDSFGSRMSPITGGEASCHSPDLD-SPHLEA--RENAMMRYKE 67
             SIS S   A    +S+  D   SR+    G       P L  S H  +  RE  ++RY+E
Sbjct:   276 SISFSSMEAGIVPDSTVIDMPNSRILTPAGAINLFSGPSLQMSLHFSSMDREARVLRYRE 335

Query:    68 KKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
             KKKAR+ +K I+Y +RKA A+AR R++GRF K
Sbjct:   336 KKKARKFEKTIRYETRKAYAEARPRIKGRFAK 367

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 133 (51.9 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 38/92 (41%), Positives = 52/92 (56%)

Query:    15 SISTSRFSA----ESSGTDSFGSRMSPITGGEASCHSPDLD-SPHLEA--RENAMMRYKE 67
             SIS S   A    +S+  D   SR+    G       P L  S H  +  RE  ++RY+E
Sbjct:   288 SISFSSMEAGIVPDSTVIDMPNSRILTPAGAINLFSGPSLQMSLHFSSMDREARVLRYRE 347

Query:    68 KKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
             KKKAR+ +K I+Y +RKA A+AR R++GRF K
Sbjct:   348 KKKARKFEKTIRYETRKAYAEARPRIKGRFAK 379

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00081165 hypothetical protein (497 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
pfam06203	45	pfam06203, CCT, CCT motif	2e-14

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 61.5 bits (150), Expect = 2e-14
 Identities = 26/42 (61%), Positives = 36/42 (85%)

Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
          RE A++RYKEK+K R+ DK+I+Y SRKA A++R RV+GRF+K
Sbjct: 1  REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVK 42

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.86
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.9
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	95.89

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.86  E-value=9.4e-23  Score=127.19  Aligned_cols=45  Identities=53%  Similarity=0.846  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhhhccCCcccccchhhhhhhccCCCcceecCCC
Q 033800           58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEG  102 (111)
Q Consensus        58 R~~~v~RYreKkk~R~f~KkIrY~~RK~~Ad~RpRvKGRFvk~~~  102 (111)
                      |+++|+||+|||++|+|+|+|+|++||++||.|||||||||+.++
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            689999999999999999999999999999999999999999853

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.90  E-value=0.00029  Score=51.05  Aligned_cols=41  Identities=39%  Similarity=0.653  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCcccccchhhhhhhccCCCc
Q 033800           55 LEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQG   95 (111)
Q Consensus        55 ~~~R~~~v~RYreKkk~R~f~KkIrY~~RK~~Ad~RpRvKG   95 (111)
                      ...|+..+.||++++..+.|.++|+|..|+..|+.+++++|
T Consensus       290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (340)
T KOG1601|consen  290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG  330 (340)
T ss_pred             cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence            68999999999999999999999999999999999999999

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=95.89  E-value=0.0054  Score=34.87  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHhhhccCCccccc
Q 033800           56 EARENAMMRYKEKKKARRQDKQIQYP   81 (111)
Q Consensus        56 ~~R~~~v~RYreKkk~R~f~KkIrY~   81 (111)
                      .+|.+.|+||.||||.|... +.-|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            57999999999999999977 55553

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	95.38
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	93.43

>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*

Probab=95.38  E-value=0.0088  Score=31.54  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 033800           55 LEARENAMMRYKEKKKAR   72 (111)
Q Consensus        55 ~~~R~~~v~RYreKkk~R   72 (111)
                      +.+|.+.|+||.||||.|
T Consensus         3 p~aRk~SLqRFleKRk~R   20 (21)
T 3ogl_Q            3 PIARRASLHRFLEKRKDR   20 (26)
T ss_pred             chhHHHHHHHHHHHhhcc
Confidence            468999999999999987

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=93.43  E-value=0.03  Score=29.75  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHhhhccCC
Q 033800           58 RENAMMRYKEKKKARRQDK   76 (111)
Q Consensus        58 R~~~v~RYreKkk~R~f~K   76 (111)
                      |.+.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5678999999999987543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00