Citrus Sinensis ID: 033813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICRK
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccccccEEEEEEHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccEEEEccccHHHcc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHHccHHHHccccHcHHHccEEEEEEEHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccEEcccccHHHHcc
Coil and Loop (DISEMBL)
MASMTMAAAsllptsmaknpaatrakrGGLIVVAKAAsskaenvsmefknkdesssngRRELVFAAAAAAACSIAKVAMaeseepkrgtpdakkkyapvcvtmptaricrk
Flexible Loop (DISEMBL)
MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKaasskaenvsmefknkdesssnGRRELVFAAAAAAACSIAKVAMaeseepkrgtpdakkkyapvcvtmptaricrk
Low Complexity Region (SEG)
masmtmaaasLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFaaaaaaacsiakvamaESEEPKRGTPDAKKKYAPVCVTMPTARICRK
Disordered region (IsUnstruct)
******************************IV*****************************LVFAAAAAAACSIAKV********************PVCVT*********
Disordered Region (DISOPRED)
*******AASLLPT************************************************VFAAAAAAACSIAKVAM****************YAPVCVTMPTARIC**
Disordered Region (DISEMBL)
********ASLLPTSMAKNPAATRAKRGGLIVVAK**********************GRRELVFAAAAAAACSIAKV***************KKKYAPVCVTMPTARICRK
Disordered Region (DISPRO)
********ASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNK****SNGRRELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICRK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q39195	103	Photosystem II 5 kDa prot	yes	no	0.918	0.990	0.572	2e-20
B3EWI4	106	Photosystem II 5 kDa prot	N/A	no	0.927	0.971	0.580	4e-19
P31336	105	Photosystem II 5 kDa prot	N/A	no	0.936	0.990	0.527	4e-18

>sp|Q39195|PST2_ARATH Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=3 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 8/110 (7%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM A +  P ++AK P+AT  +R  ++     AS+     S+E K  ++SS+  RR
Sbjct: 1   MASMTMTA-TFFP-AVAKVPSATGGRRLSVV----RASTSDNTPSLEVK--EQSSTTMRR 52

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +L+F AAAAA CS+AKVAMAE EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct: 53  DLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

May be a component of the oxygen-evolving complex.
Arabidopsis thaliana (taxid: 3702)

>sp|B3EWI4|PST2_PETHY Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 9/112 (8%)

Query: 1   MASMTMAAASLLPTSMA--KNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNG 58
           MAS+TM ++ L  +++A  K P+A R  RG  +V+ KA      NV +  KN +ES ++G
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANR--RG--VVMVKAMHEGENNVVIS-KN-EESKNSG 54

Query: 59  RRELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           RREL FA AAAAACS+AK AMA+ EEPKRGTP+AKKKY+ VCVT PTARICR
Sbjct: 55  RRELFFAMAAAAACSVAKTAMAD-EEPKRGTPEAKKKYSSVCVTNPTARICR 105

May be a component of the oxygen-evolving complex.

Petunia hybrida (taxid: 4102)

>sp|P31336|PST2_GOSHI Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 6/110 (5%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MAS+TM  + L  T++ K       +R  L+V   A  ++ E+V M  + K E + NGRR
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRR--LVVANAAKGAQVESVQMSGERKTEGN-NGRR 57

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           E++FAAAAAA CS+A VA AE   PKRG+ +AKK YAPVCVTMPTARICR
Sbjct: 58  EMMFAAAAAAICSVAGVATAE---PKRGSAEAKKAYAPVCVTMPTARICR 104

May be a component of the oxygen-evolving complex.

Gossypium hirsutum (taxid: 3635)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
224054994	105	predicted protein [Populus trichocarpa]	0.945	1.0	0.666	1e-24
224106185	105	predicted protein [Populus trichocarpa]	0.936	0.990	0.636	4e-23
297852864	106	photosystem II 5 kD protein [Arabidopsis	0.945	0.990	0.6	5e-19
18402859	103	photosystem II subunit T [Arabidopsis th	0.918	0.990	0.572	7e-19
297789402	103	hypothetical protein ARALYDRAFT_920397 [	0.918	0.990	0.563	1e-18
18403499	106	Photosystem II 5 kD protein [Arabidopsis	0.945	0.990	0.572	1e-17
21537121	106	photosystem II [Arabidopsis thaliana]	0.945	0.990	0.572	1e-17
408407791	106	RecName: Full=Photosystem II 5 kDa prote	0.927	0.971	0.580	1e-17
351721541	104	uncharacterized protein LOC100527666 [Gl	0.936	1.0	0.558	2e-17
312283313	106	unnamed protein product [Thellungiella h	0.945	0.990	0.563	2e-17

>gi|224054994|ref|XP_002298398.1| predicted protein [Populus trichocarpa] gi|118487685|gb|ABK95667.1| unknown [Populus trichocarpa] gi|118488853|gb|ABK96236.1| unknown [Populus trichocarpa x Populus deltoides] gi|118488867|gb|ABK96243.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489821|gb|ABK96710.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489889|gb|ABK96742.1| unknown [Populus trichocarpa x Populus deltoides] gi|222845656|gb|EEE83203.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 88/111 (79%), Gaps = 6/111 (5%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM A+ L  ++MAK P  T   R GLIV    AS   E V++E KNK+ESSS GRR
Sbjct: 1   MASMTMTASFLAGSTMAKQPLTT--PRRGLIVAK--ASRTTEGVNVEMKNKEESSS-GRR 55

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICRK 111
           +L+FAAAAAAA SIA+VA+A+ EEP+RGTP+AKKKYAP+CVTMPTARICRK
Sbjct: 56  DLMFAAAAAAAYSIARVAIAD-EEPERGTPEAKKKYAPICVTMPTARICRK 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106185|ref|XP_002314076.1| predicted protein [Populus trichocarpa] gi|222850484|gb|EEE88031.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 87/110 (79%), Gaps = 6/110 (5%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MAS+TM A+ L  ++MAK P+ T   R GLIV    AS   E V++E KN++ESS  GRR
Sbjct: 1   MASITMTASFLTGSAMAKQPSTT--PRRGLIVAK--ASRATEGVNVEMKNREESS-GGRR 55

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +L+FAAAAAAA SIA+VA+A+ EEP+RGTP+AKKKYAP+CVTMPTARICR
Sbjct: 56  DLMFAAAAAAAYSIARVAIAD-EEPRRGTPEAKKKYAPICVTMPTARICR 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852864|ref|XP_002894313.1| photosystem II 5 kD protein [Arabidopsis lyrata subsp. lyrata] gi|297340155|gb|EFH70572.1| photosystem II 5 kD protein [Arabidopsis lyrata subsp. lyrata]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 76/110 (69%), Gaps = 5/110 (4%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM + S LPT ++K PA         + V KA++S  EN +     K E S   RR
Sbjct: 1   MASMTMTS-SFLPT-VSKLPANISGNSRRSLTVVKASAS--ENTTSLENKKQEQSMKMRR 56

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +LVF AAAAA CS+AKVAMA+ EEPKRGT  AKKKYAPVCVTMPTARICR
Sbjct: 57  DLVFTAAAAAVCSLAKVAMAD-EEPKRGTEAAKKKYAPVCVTMPTARICR 105

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402859|ref|NP_566674.1| photosystem II subunit T [Arabidopsis thaliana] gi|21542450|sp|Q39195.2|PST2_ARATH RecName: Full=Photosystem II 5 kDa protein, chloroplastic; Short=PSII-T; AltName: Full=Nuclear encoded psbT; AltName: Full=PsbTn; Flags: Precursor gi|11692868|gb|AAG40037.1|AF324686_1 MSA6 [Arabidopsis thaliana] gi|11908024|gb|AAG41441.1|AF326859_1 unknown protein [Arabidopsis thaliana] gi|12642844|gb|AAK00364.1|AF339682_1 unknown protein [Arabidopsis thaliana] gi|11994265|dbj|BAB01448.1| photosystem II 5 kD protein precursor [Arabidopsis thaliana] gi|17065058|gb|AAL32683.1| photosystem II 5 kD protein precursor [Arabidopsis thaliana] gi|20260032|gb|AAM13363.1| photosystem II 5 kD protein precursor [Arabidopsis thaliana] gi|21593345|gb|AAM65294.1| photosystem II [Arabidopsis thaliana] gi|332642933|gb|AEE76454.1| photosystem II subunit T [Arabidopsis thaliana]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 8/110 (7%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM A +  P ++AK P+AT  +R  ++     AS+     S+E K  ++SS+  RR
Sbjct: 1   MASMTMTA-TFFP-AVAKVPSATGGRRLSVV----RASTSDNTPSLEVK--EQSSTTMRR 52

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +L+F AAAAA CS+AKVAMAE EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct: 53  DLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789402|ref|XP_002862672.1| hypothetical protein ARALYDRAFT_920397 [Arabidopsis lyrata subsp. lyrata] gi|297835070|ref|XP_002885417.1| hypothetical protein ARALYDRAFT_898540 [Arabidopsis lyrata subsp. lyrata] gi|297308332|gb|EFH38930.1| hypothetical protein ARALYDRAFT_920397 [Arabidopsis lyrata subsp. lyrata] gi|297331257|gb|EFH61676.1| hypothetical protein ARALYDRAFT_898540 [Arabidopsis lyrata subsp. lyrata]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 8/110 (7%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM A + LP ++AK P+AT  +R   + V +A++S   + +   + K++ S+  RR
Sbjct: 1   MASMTMTA-TFLP-AIAKLPSATGGRR---LSVVRASTS---DNTPSLQVKEQCSTTMRR 52

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +L+F AAAAA CS+AKVAMAE EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct: 53  DLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403499|ref|NP_564589.1| Photosystem II 5 kD protein [Arabidopsis thaliana] gi|4836947|gb|AAD30649.1|AC006085_22 Putative photosystem II 5 KD protein [Arabidopsis thaliana] gi|12325362|gb|AAG52621.1|AC024261_8 unknown protein; 88255-88575 [Arabidopsis thaliana] gi|14326535|gb|AAK60312.1|AF385721_1 At1g51400/F5D21_10 [Arabidopsis thaliana] gi|15215584|gb|AAK91337.1| At1g51400/F5D21_10 [Arabidopsis thaliana] gi|22137316|gb|AAM91503.1| At1g51400/F5D21_10 [Arabidopsis thaliana] gi|332194541|gb|AEE32662.1| Photosystem II 5 kD protein [Arabidopsis thaliana]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 75/110 (68%), Gaps = 5/110 (4%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM + S LPT ++  PA   +     + V KA+ S  EN +     K E S   RR
Sbjct: 1   MASMTMTS-SFLPT-VSNLPANISSNSRRSLTVVKASGS--ENTTSLENKKQEQSMKMRR 56

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +LVF AAAAA CS+AKVAMA+ +EPKRGT  AKKKYAPVCVTMPTA+ICR
Sbjct: 57  DLVFTAAAAAVCSLAKVAMAD-DEPKRGTEAAKKKYAPVCVTMPTAKICR 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537121|gb|AAM61462.1| photosystem II [Arabidopsis thaliana]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 75/110 (68%), Gaps = 5/110 (4%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM + S LPT ++  PA   +     + V KA+ S  EN +     + E S   RR
Sbjct: 1   MASMTMTS-SFLPT-VSNLPANISSNSRRSLTVVKASGS--ENTTSLENKEQEQSMKMRR 56

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +LVF AAAAA CS+AKVAMA+ +EPKRGT  AKKKYAPVCVTMPTARICR
Sbjct: 57  DLVFTAAAAAVCSLAKVAMAD-DEPKRGTEAAKKKYAPVCVTMPTARICR 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408407791|sp|B3EWI4.1|PST2_PETHY RecName: Full=Photosystem II 5 kDa protein, chloroplastic; Flags: Precursor

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 9/112 (8%)

Query: 1   MASMTMAAASLLPTSMA--KNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNG 58
           MAS+TM ++ L  +++A  K P+A R  RG  +V+ KA      NV +  KN +ES ++G
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANR--RG--VVMVKAMHEGENNVVIS-KN-EESKNSG 54

Query: 59  RRELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           RREL FA AAAAACS+AK AMA+ EEPKRGTP+AKKKY+ VCVT PTARICR
Sbjct: 55  RRELFFAMAAAAACSVAKTAMAD-EEPKRGTPEAKKKYSSVCVTNPTARICR 105

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721541|ref|NP_001235677.1| uncharacterized protein LOC100527666 [Glycine max] gi|255632908|gb|ACU16808.1| unknown [Glycine max]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 7/111 (6%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MAS TM A S+L +    N +A   +R  L+V A A + +AE VS +    D   SNGRR
Sbjct: 1   MASFTMTA-SILGSPTVTNRSAVATQRRSLVVNA-AKAVEAEKVSYD---NDMDGSNGRR 55

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICRK 111
            L+FAAAAAA CS+A   MA ++EPK GTP+AKKKYAP+CVTMPTARICR 
Sbjct: 56  NLMFAAAAAAVCSVA--GMAVADEPKPGTPEAKKKYAPICVTMPTARICRN 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283313|dbj|BAJ34522.1| unnamed protein product [Thellungiella halophila]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 75/110 (68%), Gaps = 5/110 (4%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM + S LP +++K P A        + V KA++S  EN +     K E S   RR
Sbjct: 1   MASMTMTS-SFLP-AVSKLPTAITGSNRRSLTVVKASTS--ENTTSLENRKQEQSMKMRR 56

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           ++VF AAAAA CS+AK AMA+ EEPKRGT  AKKKYAPVCVTMPTA+ICR
Sbjct: 57  DMVFTAAAAAVCSLAKAAMAD-EEPKRGTEAAKKKYAPVCVTMPTAKICR 105

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:505006359	103	PSBTN "AT3G21055" [Arabidopsis	0.810	0.873	0.468	2.3e-14
TAIR|locus:2033915	106	AT1G51400 "AT1G51400" [Arabido	0.855	0.896	0.444	1.3e-13

TAIR|locus:505006359 PSBTN "AT3G21055" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 45/96 (46%), Positives = 57/96 (59%)

Query:    15 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXX 74
             ++AK P+AT  +R  L VV   AS+     S+E K  ++SS+  RR+L+F          
Sbjct:    13 AVAKVPSATGGRR--LSVVR--ASTSDNTPSLEVK--EQSSTTMRRDLMFTAAAAAVCSL 66

Query:    75 XXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
                   E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:    67 AKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2033915 AT1G51400 "AT1G51400" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 44/99 (44%), Positives = 55/99 (55%)

Query:    12 LPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXX 71
             LPT ++  PA   +     + V KA+ S+    S+E K K E S   RR+LVF       
Sbjct:    11 LPT-VSNLPANISSNSRRSLTVVKASGSE-NTTSLENK-KQEQSMKMRRDLVFTAAAAAV 67

Query:    72 XXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
                      + +EPKRGT  AKKKYAPVCVTMPTA+ICR
Sbjct:    68 CSLAKVAMAD-DEPKRGTEAAKKKYAPVCVTMPTAKICR 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.123   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111        85   0.00091  102 3  11 23  0.49    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  462 (49 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.86u 0.10s 9.96t   Elapsed:  00:00:02
  Total cpu time:  9.86u 0.10s 9.96t   Elapsed:  00:00:02
  Start:  Fri May 10 04:45:31 2013   End:  Fri May 10 04:45:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0010224 "response to UV-B" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3EWI4	PST2_PETHY	No assigned EC number	0.5803	0.9279	0.9716	N/A	no
P31336	PST2_GOSHI	No assigned EC number	0.5272	0.9369	0.9904	N/A	no
Q39195	PST2_ARATH	No assigned EC number	0.5727	0.9189	0.9902	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0053001101 SubName- Full=Putative uncharacterized protein; (105 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
PLN00058	103	PLN00058, PLN00058, photosystem II reaction center	2e-18

>gnl|CDD|177689 PLN00058, PLN00058, photosystem II reaction center subunit T; Provisional

 Score = 73.7 bits (180), Expect = 2e-18
 Identities = 62/110 (56%), Positives = 79/110 (71%), Gaps = 8/110 (7%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM A + LP  +AK P+AT  +R   + V +A++S     +   + K++ S+  RR
Sbjct: 1   MASMTMTA-TFLPA-VAKLPSATGGRR---LSVVRASTSDN---TPSLEVKEQQSTTMRR 52

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +L+F AAAAA CS+AKVAMAE EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct: 53  DLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PLN00058	103	photosystem II reaction center subunit T; Provisio	100.0
TIGR02811	66	formate_TAT formate dehydrogenase region TAT targe	82.15

>PLN00058 photosystem II reaction center subunit T; Provisional

Probab=100.00  E-value=2.4e-55  Score=315.98  Aligned_cols=103  Identities=56%  Similarity=0.793  Sum_probs=97.8

Q ss_pred             CccchhhhhhhccccccCCCcccccCCcceEEeeehhhhcccccccccccccccccchhHHHHHHHHHHHHHhhhhhhhh
Q 033813            1 MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFAAAAAAACSIAKVAMA   80 (111)
Q Consensus         1 MAS~TMta~Sfl~~~a~~~~~~~~a~rR~lvVv~~Aa~~~~~~~~~~~~~~~~~~~~gRR~lmFAAAAAAvcsva~~AmA   80 (111)
                      |||||||+ |||  +++++ |+++++||+|+|| ||+ +++++|++++++ + |++||||||||++||++||||+|+|||
T Consensus         1 MAS~TMta-Sfl--~~~~~-~~~~~~rr~l~Vv-~Aa-k~~~~e~v~~~~-~-e~~~gRR~~mfaaaAaav~s~a~~A~a   72 (103)
T PLN00058          1 MASMTMTA-TFL--PAVAK-LPSATGGRRLSVV-RAS-TSDNTPSLEVKE-Q-QSTTMRRDLMFTAAAAAVCSLAKVAMA   72 (103)
T ss_pred             CccchhHH-HHH--HHHhc-cCCcccCceEEEE-Ecc-ccccccceeecc-c-cchhhHHHHHHHHHHHHHHhhhHHHhh
Confidence            99999999 999  47777 8899999999998 999 999999999997 4 899999999999999999999999999


Q ss_pred             hcCCCCCCChhhhhhcCCceeeccccccccC
Q 033813           81 ESEEPKRGTPDAKKKYAPVCVTMPTARICRK  111 (111)
Q Consensus        81 e~~ePKrGTpeAKKkYApVCVTmPTArICr~  111 (111)
                      |++||||||||||||||||||||||||||||
T Consensus        73 ~~~epk~Gt~eAKKkYa~iCVtmPTA~iC~~  103 (103)
T PLN00058         73 EEEEPKRGTEAAKKKYAQVCVTMPTAKICRY  103 (103)
T ss_pred             cccCCCCCCHHHHhcccceeecCchhhhhcC
Confidence            7789999999999999999999999999998

>TIGR02811 formate_TAT formate dehydrogenase region TAT target

Probab=82.15  E-value=1.8  Score=28.74  Aligned_cols=15  Identities=20%  Similarity=0.386  Sum_probs=11.0

Q ss_pred             ccccchhHHHHHHHH
Q 033813           53 ESSSNGRRELVFAAA   67 (111)
Q Consensus        53 ~~~~~gRR~lmFAAA   67 (111)
                      .+.+.+|||+|-.++
T Consensus         5 ~~~~~sRR~Flk~lg   19 (66)
T TIGR02811         5 QKADPSRRDLLKGLG   19 (66)
T ss_pred             ccCCccHHHHHHHHH
Confidence            456789999887544

Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00