Citrus Sinensis ID: 033867

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM
Secondary Structure (PSIPRED)
cccEEEEccccEEEEEEccccccccccccccEEEEEcccccEEEcHHHHHHHHHHcccEEEcccccccEEEEccccEEEEEccccccccEEEEEEEEEEEcccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccEEEEEEccccccccccccccEEEEEccccHHHHHHHHHHHHHHHcccEEcccccccHHEEccccccEEEEcccHHHHccEEEEEEEEEEcccEEEEEEc
Coil and Loop (DISEMBL)
MSGVWVFNTNGVIRlienpqaesqgssssrRKVLVhlptgevvssYSSLEQILTGLgweryyggdpdlfqfhkhssidlislprdfskfnsVYMYDIViknpnvfhvrdm
Flexible Loop (DISEMBL)
MSGVWVFNTNGVIRLienpqaesqgssssrRKVLVHLptgevvssysSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIViknpnvfhvrdm
Low Complexity Region (SEG)
MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM
Disordered region (IsUnstruct)
***VWVFNTNGVIRLI****************VLVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHV***
Disordered Region (DISOPRED)
MSGVWVFNTNGVI*********************VHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM
Disordered Region (DISEMBL)
MSGVWVFNTNGVIRLIENP************KVLVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM
Disordered Region (DISPRO)
*SGVWVFNTNGVIRLIENPQ********SRRKVLVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9LXB5	112	Flowering-promoting facto	yes	no	0.990	0.973	0.767	4e-42
O24340	110	Flowering-promoting facto	N/A	no	0.972	0.972	0.763	5e-42
O23624	110	Flowering-promoting facto	no	no	0.972	0.972	0.772	5e-42
Q5Q0B3	124	Flowering-promoting facto	no	no	1.0	0.887	0.661	1e-39
Q9LGE3	109	Flowering-promoting facto	yes	no	0.972	0.981	0.636	4e-33
Q0E1D7	122	Flowering-promoting facto	no	no	0.972	0.877	0.578	6e-31
Q8LR63	127	Flowering-promoting facto	no	no	0.990	0.858	0.531	4e-30
Q0JEF5	118	Flowering-promoting facto	no	no	0.927	0.864	0.504	8e-24
A3BNA1	105	Flowering-promoting facto	no	no	0.890	0.933	0.504	8e-22

>sp|Q9LXB5|FLP2_ARATH Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana GN=FLP2 PE=2 SV=1

 Score =  169 bits (428), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 92/112 (82%), Gaps = 3/112 (2%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSS--RRKVLVHLPTGEVVSSYSSLEQILTGLGW 58
           MSGVWVFN NGVIRL+ENP      S+ S  RR VLV+LPTGE VSSYSSLEQIL  LGW
Sbjct: 1   MSGVWVFN-NGVIRLVENPNQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGW 59

Query: 59  ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           ERY+ GD DL Q+HK SSIDLISLPRDFSKFNSVYMYDIV+KNPN FHVRD 
Sbjct: 60  ERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRDF 111

Modulates the competence to flowering of apical meristems.
Arabidopsis thaliana (taxid: 3702)

>sp|O24340|FPF1_SINAL Flowering-promoting factor 1 OS=Sinapis alba GN=FPF1 PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 97/110 (88%), Gaps = 3/110 (2%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWER 60
           MSGVWVF  NGVIRL+ENP  +S G ++SRRKV+V+LPTGEV+SSYS+LEQIL  LGWER
Sbjct: 1   MSGVWVFK-NGVIRLVENPN-QSGGDTNSRRKVMVYLPTGEVISSYSTLEQILRSLGWER 58

Query: 61  YYGG-DPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           Y+GG D DL QFHK SSIDLISLP+DF+KF+SVYMYDIV+KNPN FHVRD
Sbjct: 59  YFGGGDTDLLQFHKRSSIDLISLPKDFTKFSSVYMYDIVVKNPNYFHVRD 108

Modulates the competence to flowering of apical meristems.

Sinapis alba (taxid: 3728)

>sp|O23624|FPF1_ARATH Flowering-promoting factor 1 OS=Arabidopsis thaliana GN=FPF1 PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 95/110 (86%), Gaps = 3/110 (2%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWER 60
           MSGVWVF  NGVIRL+ENP  +S   + +RRKV+V+LPTGEVVSSYS+LEQIL  LGWER
Sbjct: 1   MSGVWVFK-NGVIRLVENPN-QSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWER 58

Query: 61  YYGG-DPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           Y+GG D DL QFHK SSIDLISLPRDF+KFNSVYMYDIV+KNPN FHVRD
Sbjct: 59  YFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 108

Modulates the competence to flowering of apical meristems. Involved in a GA-dependent response in apical meristems during the transition to flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Q0B3|FLP1_ARATH Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana GN=FLP1 PE=2 SV=2

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 92/124 (74%), Gaps = 14/124 (11%)

Query: 1   MSGVWVFNTNGVIRLIENPQAES------------QGSSSSRRKVLVHLPTGEVVSSYSS 48
           MSGVWVFN NGV+RL+ENP  +S                  RRK+LVHLP+ EVVSSY S
Sbjct: 1   MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query: 49  LEQILTGLGWERYYGGD--PDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFH 106
           LE+IL  LGWERYY GD    L QFHK +SIDLISLPRDFSKFNS++MYDIV+KNPNVFH
Sbjct: 61  LEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKNPNVFH 120

Query: 107 VRDM 110
           VRDM
Sbjct: 121 VRDM 124

Modulates the competence to flowering of apical meristems.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LGE3|FLP1_ORYSJ Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica GN=RAA1 PE=1 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 84/110 (76%), Gaps = 3/110 (2%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGS-SSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWE 59
           MSGVWVF  NGV+RL+E  QA +  + +  RRK LVH P+G+VVSSY++LE  LT LGWE
Sbjct: 1   MSGVWVFK-NGVVRLVEKQQATAGTAVAGGRRKALVHTPSGQVVSSYAALEARLTALGWE 59

Query: 60  RYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           RYY  DP LFQFHK  S+DLISLP DFS F+SV+MYDIV+KN + F V D
Sbjct: 60  RYYE-DPSLFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRDSFRVVD 108

GTP-binding protein that functions in the development of rice root systems, which are mediated by auxin. Acts as a cell cycle regulator during root development. Proteasome-mediated degradation of the protein is necessary for the transition of metaphase to anaphase in mitosis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0E1D7|FLP3_ORYSJ Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 83/114 (72%), Gaps = 7/114 (6%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSS-----RRKVLVHLPTGEVVSSYSSLEQILTG 55
           M+GVWVF  +G++R +ENP +E   S+       RRKVLVH+P+GEVV+SY  LE+ L  
Sbjct: 1   MAGVWVFK-DGIVRRVENPGSEESSSAGDGGGGGRRKVLVHVPSGEVVASYEVLERRLRE 59

Query: 56  LGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           LGWERY   DP L QFH+ S++ LIS+PRDFSKF  V+MYDIV+K  NVF VRD
Sbjct: 60  LGWERYLT-DPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRD 112

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LR63|FLP2_ORYSJ Flowering-promoting factor 1-like protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0933500 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 85/128 (66%), Gaps = 19/128 (14%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSS-----------RRKVLVHLPTGEVVSSYSSL 49
           MSGVWVF  NGV++L+ENP A +                 RRK L+H+PTGEVV+SY+SL
Sbjct: 1   MSGVWVFR-NGVVKLVENPPASANSGGGGGGGGGGGGGGIRRKALLHMPTGEVVTSYASL 59

Query: 50  EQILTGLGWERYYGGDPD-------LFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNP 102
           E+ L  LGWERYY G          + QFHK SS+DLISLP+DFS+F SV+MYDIV+KN 
Sbjct: 60  ERKLAALGWERYYSGGGGAAAAAAMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNR 119

Query: 103 NVFHVRDM 110
           + F V D+
Sbjct: 120 DAFRVIDV 127

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JEF5|FLP4_ORYSJ Flowering-promoting factor 1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os04g0282400 PE=2 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 15/117 (12%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSSRR--------KVLVHLPTGEVVSSYSSLEQI 52
           M+GVWVF  +G++R     +A+S+  S  R         KVLVH+P+ EVV+SY  LE+ 
Sbjct: 1   MAGVWVFE-DGMVR-----RADSEAPSRGRGVGGGGGGGKVLVHVPSSEVVTSYEVLERR 54

Query: 53  LTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           L  LGWERY   DP L QFH+ S++ LIS+PRDFS+   V+MYD+V+K  NVF VRD
Sbjct: 55  LRELGWERYLN-DPCLLQFHQRSTVHLISVPRDFSRLKLVHMYDVVVKTRNVFEVRD 110

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A3BNA1|FLP5_ORYSJ Flowering-promoting factor 1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os07g0671000 PE=3 SV=1

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 11/109 (10%)

Query: 3   GVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWERYY 62
           GVWVF  NGV+ L      E Q +S   RK LVH+ T EV+ S  +LE+ L  LGWERYY
Sbjct: 5   GVWVFRNNGVMEL------EEQATS---RKALVHVATSEVIRSTEALERRLGALGWERYY 55

Query: 63  GGDPDLFQFHKHS-SIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
             D    Q H+   S DLIS+PRDFS+F S +MYD+V+KN + F V D+
Sbjct: 56  E-DRATLQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFKVVDL 103

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
224121380	112	predicted protein [Populus trichocarpa]	1.0	0.982	0.857	3e-49
224115672	112	predicted protein [Populus trichocarpa]	1.0	0.982	0.857	9e-49
351723135	114	uncharacterized protein LOC100527299 [Gl	0.981	0.947	0.815	1e-45
356552565	113	PREDICTED: uncharacterized protein LOC10	0.981	0.955	0.814	4e-45
449441988	111	PREDICTED: flowering-promoting factor 1-	0.990	0.981	0.803	9e-45
255574107	112	conserved hypothetical protein [Ricinus	0.990	0.973	0.796	1e-44
388517801	114	unknown [Lotus japonicus]	1.0	0.964	0.765	3e-43
388512513	114	unknown [Lotus japonicus]	1.0	0.964	0.756	1e-42
359476321	108	PREDICTED: uncharacterized protein LOC10	0.972	0.990	0.8	4e-42
297808495	109	hypothetical protein ARALYDRAFT_910533 [	0.972	0.981	0.788	5e-42

>gi|224121380|ref|XP_002330813.1| predicted protein [Populus trichocarpa] gi|222872615|gb|EEF09746.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/112 (85%), Positives = 101/112 (90%), Gaps = 2/112 (1%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQG--SSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGW 58
           MSGVWVF  NGVIRL+ENP AES G     SRRKVLVHLP+G+VV+SYSSLEQIL  LGW
Sbjct: 1   MSGVWVFKNNGVIRLVENPAAESNGMNGGGSRRKVLVHLPSGQVVTSYSSLEQILKELGW 60

Query: 59  ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPN+FHVRDM
Sbjct: 61  ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNMFHVRDM 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115672|ref|XP_002332114.1| predicted protein [Populus trichocarpa] gi|222874934|gb|EEF12065.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/112 (85%), Positives = 100/112 (89%), Gaps = 2/112 (1%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGS--SSSRRKVLVHLPTGEVVSSYSSLEQILTGLGW 58
           MSGVW F  NGVIRL+ENP AES G   S SRRKVLVHLP+G+VVSSYSSLEQIL  LGW
Sbjct: 1   MSGVWFFKNNGVIRLVENPAAESNGGNGSGSRRKVLVHLPSGQVVSSYSSLEQILNELGW 60

Query: 59  ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           ERYYGGDPDLFQFHK SSIDLISLPRDFSKFNSVYMYDIVIKNPN+FHVRDM
Sbjct: 61  ERYYGGDPDLFQFHKQSSIDLISLPRDFSKFNSVYMYDIVIKNPNIFHVRDM 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723135|ref|NP_001237780.1| uncharacterized protein LOC100527299 [Glycine max] gi|255632035|gb|ACU16370.1| unknown [Glycine max] gi|255634258|gb|ACU17493.1| unknown [Glycine max]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 100/114 (87%), Gaps = 6/114 (5%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGS-----SSSRRKVLVHLPTGEVVSSYSSLEQILTG 55
           MSGVWVF  NGV RL+ENPQAE+        SSS+RKVLVHLPTGEVVSSY+ LEQILTG
Sbjct: 1   MSGVWVFK-NGVFRLVENPQAEASDGRHGKGSSSKRKVLVHLPTGEVVSSYAFLEQILTG 59

Query: 56  LGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           LGWERYY GDPDL+QFHKHSSIDLISLP+DFSKFNS+ MYDIVIKNPNVFHVRD
Sbjct: 60  LGWERYYDGDPDLYQFHKHSSIDLISLPKDFSKFNSINMYDIVIKNPNVFHVRD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552565|ref|XP_003544636.1| PREDICTED: uncharacterized protein LOC100789226 [Glycine max]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 99/113 (87%), Gaps = 5/113 (4%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQG----SSSSRRKVLVHLPTGEVVSSYSSLEQILTGL 56
           MSGVWVF  NGV RL+ENPQAE        SSS+RK+LVHLPTGEVVSSY+ LEQILTGL
Sbjct: 1   MSGVWVFK-NGVFRLVENPQAEVSDRHGKGSSSKRKMLVHLPTGEVVSSYAFLEQILTGL 59

Query: 57  GWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           GWERYY GDPDL+QFHKHSSIDLISLP+DFSKFNS+ MYDIVIKNPNVFHVRD
Sbjct: 60  GWERYYDGDPDLYQFHKHSSIDLISLPKDFSKFNSINMYDIVIKNPNVFHVRD 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441988|ref|XP_004138764.1| PREDICTED: flowering-promoting factor 1-like [Cucumis sativus] gi|449499554|ref|XP_004160847.1| PREDICTED: flowering-promoting factor 1-like [Cucumis sativus]

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 100/112 (89%), Gaps = 3/112 (2%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQG--SSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGW 58
           MSGVWVF  NGVIRLIENPQA+S G   +S R KVL+HLPTG+ V+SYSSLE ILT LGW
Sbjct: 1   MSGVWVFK-NGVIRLIENPQADSDGRLGNSRRSKVLIHLPTGQPVTSYSSLENILTSLGW 59

Query: 59  ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           ERYYGGDP+LFQFHK SSIDLISLPRDF+KFNS++MYDIVIKNPN+FHVRDM
Sbjct: 60  ERYYGGDPELFQFHKRSSIDLISLPRDFAKFNSIHMYDIVIKNPNLFHVRDM 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574107|ref|XP_002527969.1| conserved hypothetical protein [Ricinus communis] gi|223532595|gb|EEF34381.1| conserved hypothetical protein [Ricinus communis]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 99/113 (87%), Gaps = 4/113 (3%)

Query: 1   MSGVWVFNTNGVIRLIENPQAES---QGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLG 57
           MSGVWVF  NGV  ++ENP AE+   +   SSRRKVLVHLP+G+VV+SYSSLEQIL  LG
Sbjct: 1   MSGVWVFKHNGVF-ILENPGAEASEGRQGGSSRRKVLVHLPSGQVVTSYSSLEQILRNLG 59

Query: 58  WERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           WERYYGGDPDLFQFHKHSSIDLISLPRDFSKF SVYMYDIV+KNPN+FHVRDM
Sbjct: 60  WERYYGGDPDLFQFHKHSSIDLISLPRDFSKFTSVYMYDIVVKNPNIFHVRDM 112

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517801|gb|AFK46962.1| unknown [Lotus japonicus]

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/111 (76%), Positives = 97/111 (87%), Gaps = 1/111 (0%)

Query: 1   MSGVWVFNTNGVIRLIENPQAE-SQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWE 59
           MSGVW F  NGV+RL+ENPQAE S+    S+RKVLV+LPTGEVV+SY+ LE+IL GLGWE
Sbjct: 1   MSGVWFFRNNGVMRLVENPQAEGSEARQGSKRKVLVYLPTGEVVNSYTFLERILIGLGWE 60

Query: 60  RYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           RYY GDPDL+QFHKH SIDLISLPRDFSKF+SV MYDIV+KNPNVFHVR +
Sbjct: 61  RYYEGDPDLYQFHKHCSIDLISLPRDFSKFSSVNMYDIVMKNPNVFHVRQV 111

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512513|gb|AFK44318.1| unknown [Lotus japonicus]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 97/111 (87%), Gaps = 1/111 (0%)

Query: 1   MSGVWVFNTNGVIRLIENPQAE-SQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWE 59
           MSGVW F  NGV++L+ENPQAE S+    S+RKVLV+LPTGEVV+SY+ LE+IL GLGWE
Sbjct: 1   MSGVWFFRNNGVMQLVENPQAEGSEARQGSKRKVLVYLPTGEVVNSYTFLERILIGLGWE 60

Query: 60  RYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRDM 110
           RYY GDPDL+QFHKH SIDLISLPRDFSKF+SV MYDIV+KNPNVFHVR +
Sbjct: 61  RYYEGDPDLYQFHKHCSIDLISLPRDFSKFSSVNMYDIVMKNPNVFHVRQV 111

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476321|ref|XP_003631818.1| PREDICTED: uncharacterized protein LOC100268047 [Vitis vinifera] gi|296081773|emb|CBI20778.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 97/110 (88%), Gaps = 3/110 (2%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQG-SSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWE 59
           MSGVWVF  NGV  L ENPQAES G   + +RKVLV+LPTGEVVSSY+SLE+IL GLGWE
Sbjct: 1   MSGVWVFK-NGVFHL-ENPQAESNGQGGTGQRKVLVYLPTGEVVSSYNSLERILRGLGWE 58

Query: 60  RYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           RYYGGDPDLFQFHK SSIDLISLPR+FSKF S+YMYD+VIKNPN+FHVRD
Sbjct: 59  RYYGGDPDLFQFHKSSSIDLISLPREFSKFTSIYMYDLVIKNPNIFHVRD 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808495|ref|XP_002872131.1| hypothetical protein ARALYDRAFT_910533 [Arabidopsis lyrata subsp. lyrata] gi|297317968|gb|EFH48390.1| hypothetical protein ARALYDRAFT_910533 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 95/109 (87%), Gaps = 2/109 (1%)

Query: 1   MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWER 60
           MSGVWVF  NGVIRL+ENP  +S   + SRRKV+V+LPTGEVVSSYS+LEQIL  LGWER
Sbjct: 1   MSGVWVFK-NGVIRLVENPN-QSGSDTHSRRKVMVYLPTGEVVSSYSTLEQILQSLGWER 58

Query: 61  YYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
           Y+GGD DL QFHK SSIDLISLPRDF+KFNSVYMYDIV+KNPN FHVRD
Sbjct: 59  YFGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2149368	110	FPF1 "AT5G24860" [Arabidopsis	0.972	0.972	0.772	4.6e-41
TAIR|locus:1006230424	112	AT5G10625 "AT5G10625" [Arabido	0.981	0.964	0.774	5.9e-41
TAIR|locus:2128206	124	FLP1 "AT4G31380" [Arabidopsis	1.0	0.887	0.709	1.8e-39
UNIPROTKB|Q9LGE3	109	RAA1 "Flowering-promoting fact	0.972	0.981	0.636	1.6e-31

TAIR|locus:2149368 FPF1 "AT5G24860" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 85/110 (77%), Positives = 95/110 (86%)

Query:     1 MSGVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWER 60
             MSGVWVF  NGVIRL+ENP  +S   + +RRKV+V+LPTGEVVSSYS+LEQIL  LGWER
Sbjct:     1 MSGVWVFK-NGVIRLVENPN-QSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWER 58

Query:    61 YYGG-DPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
             Y+GG D DL QFHK SSIDLISLPRDF+KFNSVYMYDIV+KNPN FHVRD
Sbjct:    59 YFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 108

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IGI

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:1006230424 AT5G10625 "AT5G10625" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 86/111 (77%), Positives = 92/111 (82%)

Query:     1 MSGVWVFNTNGVIRLIENPQAESQGSSSS--RRKVLVHLPTGEVVSSYSSLEQILTGLGW 58
             MSGVWVFN NGVIRL+ENP      S+ S  RR VLV+LPTGE VSSYSSLEQIL  LGW
Sbjct:     1 MSGVWVFN-NGVIRLVENPNQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGW 59

Query:    59 ERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
             ERY+ GD DL Q+HK SSIDLISLPRDFSKFNSVYMYDIV+KNPN FHVRD
Sbjct:    60 ERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRD 110

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128206 FLP1 "AT4G31380" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 88/124 (70%), Positives = 98/124 (79%)

Query:     1 MSGVWVFNTNGVIRLIENPQAESQG----SSSS--------RRKVLVHLPTGEVVSSYSS 48
             MSGVWVFN NGV+RL+ENP  +S G    SSSS        RRK+LVHLP+ EVVSSY S
Sbjct:     1 MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query:    49 LEQILTGLGWERYYGGD-PD-LFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFH 106
             LE+IL  LGWERYY GD  D L QFHK +SIDLISLPRDFSKFNS++MYDIV+KNPNVFH
Sbjct:    61 LEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKNPNVFH 120

Query:   107 VRDM 110
             VRDM
Sbjct:   121 VRDM 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|Q9LGE3 RAA1 "Flowering-promoting factor 1-like protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 70/110 (63%), Positives = 84/110 (76%)

Query:     1 MSGVWVFNTNGVIRLIENPQAESQGS-SSSRRKVLVHLPTGEVVSSYSSLEQILTGLGWE 59
             MSGVWVF  NGV+RL+E  QA +  + +  RRK LVH P+G+VVSSY++LE  LT LGWE
Sbjct:     1 MSGVWVFK-NGVVRLVEKQQATAGTAVAGGRRKALVHTPSGQVVSSYAALEARLTALGWE 59

Query:    60 RYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHVRD 109
             RYY  DP LFQFHK  S+DLISLP DFS F+SV+MYDIV+KN + F V D
Sbjct:    60 RYYE-DPSLFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRDSFRVVD 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110       110   0.00091  102 3  11 22  0.45    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  124 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.06u 0.08s 13.14t   Elapsed:  00:00:01
  Total cpu time:  13.06u 0.08s 13.14t   Elapsed:  00:00:01
  Start:  Fri May 10 06:40:17 2013   End:  Fri May 10 06:40:18 2013

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IDA

GO:0045841 "negative regulation of mitotic metaphase/anaphase transition" evidence=IDA

GO:2000280 "regulation of root development" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23624	FPF1_ARATH	No assigned EC number	0.7727	0.9727	0.9727	no	no
Q9LXB5	FLP2_ARATH	No assigned EC number	0.7678	0.9909	0.9732	yes	no
O24340	FPF1_SINAL	No assigned EC number	0.7636	0.9727	0.9727	N/A	no
Q9LGE3	FLP1_ORYSJ	No assigned EC number	0.6363	0.9727	0.9816	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00