Citrus Sinensis ID: 033976

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
ccccccccEEEHHHHHcccccEEEEEEEEEEEcccEEEEEEccccEEEEEccccccccccEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHcccccccc
ccccccccEEcHHHHHHHcccEEEEEEEEEEccccEEEEEEccccEEEEEccccccccccEEEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHcccHHHHcc
mdtsnpavfvnGGLMRMYVGRRIRTVIQVIQsdgggvtgkstdghqlvvkgpqpgfplttFVEVIGIADTDRSIRAEIWNNfgntfdtqSYNQLCQLANGEFKHLFI
mdtsnpavfvngGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
******AVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHL**
****NPA**VNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
****NPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTTFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
225440862107 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.757 8e-43
440583671 731 similar to signal recognition particle 5 1.0 0.146 0.691 3e-38
388500732107 unknown [Lotus japonicus] 1.0 1.0 0.691 4e-38
255578945108 conserved hypothetical protein [Ricinus 1.0 0.990 0.694 5e-38
30684455106 Nucleic acid-binding, OB-fold-like prote 0.981 0.990 0.685 9e-38
297816556107 hypothetical protein ARALYDRAFT_485632 [ 1.0 1.0 0.691 2e-37
225450239107 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.672 4e-37
15231278107 Nucleic acid-binding, OB-fold-like prote 1.0 1.0 0.663 4e-37
224088553107 predicted protein [Populus trichocarpa] 1.0 1.0 0.672 5e-37
297804304106 hypothetical protein ARALYDRAFT_329677 [ 0.990 1.0 0.663 5e-37
>gi|225440862|ref|XP_002282394.1| PREDICTED: uncharacterized protein LOC100264936 [Vitis vinifera] gi|297740124|emb|CBI30306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 95/107 (88%)

Query: 1   MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKGPQPGFPLTT 60
           MDTSNPAVFVN  L+RMYVGR++R VIQVI+S+GG + GKSTD  QLV+KG  P FPLTT
Sbjct: 1   MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTPPSFPLTT 60

Query: 61  FVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI 107
           FVEVIGIAD+++SIRAEIW NFG+TFDT +YNQLCQLANGE+KHLF+
Sbjct: 61  FVEVIGIADSNQSIRAEIWTNFGDTFDTYAYNQLCQLANGEYKHLFL 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|440583671|emb|CCH47177.1| similar to signal recognition particle 54 kDa protein [Lupinus angustifolius] Back     alignment and taxonomy information
>gi|388500732|gb|AFK38432.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255578945|ref|XP_002530325.1| conserved hypothetical protein [Ricinus communis] gi|223530129|gb|EEF32041.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|30684455|ref|NP_567560.2| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gi|45773776|gb|AAS76692.1| At4g18590 [Arabidopsis thaliana] gi|46359785|gb|AAS88756.1| At4g18590 [Arabidopsis thaliana] gi|332658664|gb|AEE84064.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816556|ref|XP_002876161.1| hypothetical protein ARALYDRAFT_485632 [Arabidopsis lyrata subsp. lyrata] gi|297321999|gb|EFH52420.1| hypothetical protein ARALYDRAFT_485632 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225450239|ref|XP_002267580.1| PREDICTED: uncharacterized protein LOC100244193 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15231278|ref|NP_190831.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gi|145332815|ref|NP_001078273.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gi|7669937|emb|CAB89224.1| putative protein [Arabidopsis thaliana] gi|332645450|gb|AEE78971.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gi|332645451|gb|AEE78972.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224088553|ref|XP_002308471.1| predicted protein [Populus trichocarpa] gi|224105851|ref|XP_002333759.1| predicted protein [Populus trichocarpa] gi|118485512|gb|ABK94610.1| unknown [Populus trichocarpa] gi|222838362|gb|EEE76727.1| predicted protein [Populus trichocarpa] gi|222854447|gb|EEE91994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297804304|ref|XP_002870036.1| hypothetical protein ARALYDRAFT_329677 [Arabidopsis lyrata subsp. lyrata] gi|297315872|gb|EFH46295.1| hypothetical protein ARALYDRAFT_329677 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
TAIR|locus:2124583106 AT4G18590 "AT4G18590" [Arabido 0.981 0.990 0.685 3.9e-37
TAIR|locus:2083198107 AT3G52630 "AT3G52630" [Arabido 1.0 1.0 0.663 2.7e-36
UNIPROTKB|Q9SDK9106 P0705D01.4 "cDNA clone:001-004 0.990 1.0 0.532 2.4e-28
FB|FBgn0030322112 CG15220 [Drosophila melanogast 0.925 0.883 0.310 1.2e-08
TAIR|locus:2124583 AT4G18590 "AT4G18590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 74/108 (68%), Positives = 93/108 (86%)

Query:     1 MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGGVTGKSTDGHQLVVKG-PQPGFPLT 59
             MDTS+PA FVNG L+R Y+G+++R VIQVI+SD G V GKSTD  Q+VVKG PQP  PLT
Sbjct:     1 MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQP--PLT 58

Query:    60 TFVEVIGIADTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLFI 107
             T++EVIGIA+TD +IRAE+W NFG++FD Q+YN+LC+LANGEF+HLFI
Sbjct:    59 TYLEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2083198 AT3G52630 "AT3G52630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SDK9 P0705D01.4 "cDNA clone:001-004-D02, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
FB|FBgn0030322 CG15220 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT4G18590
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Replication factor A protein 3 (InterPro-IPR013970), Nucleic acid-binding, OB-fold-like (InterPro-IPR016027); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G52630.2); Has 58 Blast hits to 58 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (106 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
RPA2
RPA2 (REPLICON PROTEIN A2); protein binding; Encodes a component of Replication Protein A. Comp [...] (279 aa)
    • • 0.956
AT3G02920
replication protein-related; replication protein-related; FUNCTIONS IN- nucleic acid binding; I [...] (278 aa)
      • 0.863
AT5G45400
replication protein, putative; replication protein, putative; FUNCTIONS IN- DNA binding, zinc i [...] (853 aa)
      • 0.788
RPA70B
RPA70B (RPA70-KDA SUBUNIT B); DNA binding / nucleic acid binding; Encodes a homolog of Replicat [...] (604 aa)
      • 0.720
AT5G61000
replication protein, putative; replication protein, putative; FUNCTIONS IN- DNA binding, nuclei [...] (629 aa)
      • 0.679
DRM1
DRM1 (domains rearranged methylase 1); DNA (cytosine-5-)-methyltransferase; Encodes methyltrans [...] (624 aa)
      • 0.679
RPA1A
RPA1A (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid binding; Encodes a homolog of Repl [...] (640 aa)
      • 0.677
DML1
DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein bi [...] (1393 aa)
      • 0.506
NRPD2A
NRPD2A; DNA binding / DNA-directed RNA polymerase; This gene encodes the second largest, cataly [...] (1172 aa)
      • 0.409
PIE1
PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic [...] (2055 aa)
      • 0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
pfam08661111 pfam08661, Rep_fac-A_3, Replication factor A prote 2e-26
cd04479101 cd04479, RPA3, RPA3: A subfamily of OB folds simil 1e-23
>gnl|CDD|219959 pfam08661, Rep_fac-A_3, Replication factor A protein 3 Back     alignment and domain information 
 Score = 93.9 bits (234), Expect = 2e-26
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 1   MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSDGGG--VTGKSTDGHQLVVKGPQPGFPL 58
           MDTS+P   +NG ++  +VG+ +R V +V   D  G      STDG  + V        L
Sbjct: 1   MDTSSPTPRINGSMLSQFVGKPVRIVGKVESVDPSGETAILSSTDGGNVTVSLN-SPLDL 59

Query: 59  --TTFVEVIGIA---DTDRSIRAEIWNNFGNTFDTQSYNQLCQLANGEFKHLF 106
             + +VEVIG      T  SIRA      G  FD   YN+L +L++ +F  L+
Sbjct: 60  EISGWVEVIGKVSPDGTIGSIRAVTCIELGEDFDLDLYNELVKLSH-KFPELY 111

Replication factor A is involved in eukaryotic DNA replication, recombination and repair. Length = 111
>gnl|CDD|239925 cd04479, RPA3, RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 107
PF08661109 Rep_fac-A_3: Replication factor A protein 3; Inter 100.0
cd04479101 RPA3 RPA3: A subfamily of OB folds similar to huma 100.0
PF15490118 Ten1_2: Telomere-capping, CST complex subunit 98.02
PF12658124 Ten1: Telomere capping, CST complex subunit; Inter 96.84
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 96.29
cd04317135 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod 94.74
cd04316108 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a 94.69
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 94.37
PRK05159 437 aspC aspartyl-tRNA synthetase; Provisional 93.91
PF04076103 BOF: Bacterial OB fold (BOF) protein; InterPro: IP 93.83
PRK03932 450 asnC asparaginyl-tRNA synthetase; Validated 93.17
PF0273642 Myosin_N: Myosin N-terminal SH3-like domain; Inter 93.09
TIGR00457 453 asnS asparaginyl-tRNA synthetase. In a multiple se 92.79
PRK13254148 cytochrome c-type biogenesis protein CcmE; Reviewe 92.6
TIGR00458 428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 91.24
PRK10053130 hypothetical protein; Provisional 90.98
PRK00484 491 lysS lysyl-tRNA synthetase; Reviewed 90.45
TIGR00156126 conserved hypothetical protein TIGR00156. As of th 90.43
PF12869144 tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 90.38
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 90.11
COG3111128 Periplasmic protein with OB-fold [Function unknown 89.76
TIGR00499 496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 89.12
PLN02221 572 asparaginyl-tRNA synthetase 88.89
PLN02903 652 aminoacyl-tRNA ligase 88.54
PRK14639140 hypothetical protein; Provisional 88.24
PRK02983 1094 lysS lysyl-tRNA synthetase; Provisional 88.18
PF10451256 Stn1: Telomere regulation protein Stn1; InterPro: 88.16
PF03100131 CcmE: CcmE; InterPro: IPR004329 CcmE is the produc 88.11
PRK14630143 hypothetical protein; Provisional 87.79
PLN02502 553 lysyl-tRNA synthetase 87.63
PRK14633150 hypothetical protein; Provisional 87.5
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 87.43
PRK12445 505 lysyl-tRNA synthetase; Reviewed 87.41
PRK14638150 hypothetical protein; Provisional 87.22
PRK14631174 hypothetical protein; Provisional 86.85
PF1448548 DUF4431: Domain of unknown function (DUF4431) 86.64
cd0173483 YlxS_C YxlS is a Bacillus subtilis gene of unknown 86.36
COG0779153 Uncharacterized protein conserved in bacteria [Fun 86.36
PRK14636176 hypothetical protein; Provisional 86.23
PRK14647159 hypothetical protein; Provisional 86.2
PLN02603 565 asparaginyl-tRNA synthetase 85.85
PF13567176 DUF4131: Domain of unknown function (DUF4131) 85.46
TIGR0073984 yajC preprotein translocase, YajC subunit. While t 85.22
cd04322108 LysRS_N LysRS_N: N-terminal, anticodon recognition 85.13
PRK05585106 yajC preprotein translocase subunit YajC; Validate 84.73
PRK14634155 hypothetical protein; Provisional 84.61
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 84.07
PF02576141 DUF150: Uncharacterised BCR, YhbC family COG0779; 83.96
PRK14646155 hypothetical protein; Provisional 83.82
PRK14637151 hypothetical protein; Provisional 83.45
cd04320102 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r 83.2
cd04319103 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod 82.35
PLN02850 530 aspartate-tRNA ligase 82.24
PRK00092154 ribosome maturation protein RimP; Reviewed 81.59
cd0431882 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod 80.2
PTZ00401 550 aspartyl-tRNA synthetase; Provisional 80.14
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair Back     alignment and domain information 
Probab=100.00  E-value=5.2e-41  Score=226.37  Aligned_cols=103  Identities=41%  Similarity=0.669  Sum_probs=82.6

Q ss_pred             CCCCCCceeeehhhhhccCCCeEEEEEEEeecc--CCeEEEEeCCCCEEEEEccCCC-CCCCCEEEEEEEECCCC---CE
Q 033976            1 MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQSD--GGGVTGKSTDGHQLVVKGPQPG-FPLTTFVEVIGIADTDR---SI   74 (107)
Q Consensus         1 Md~~~~~pRVn~~~L~~~~Gk~VrlvGkV~~~~--g~~~~~~s~D~g~V~v~l~~~~-~~~~~~vEViG~V~~~~---si   74 (107)
                      ||  .|+||||+++|++|+||+|||+|||.+++  |++++++|+||++|+|.+++|. ...++||||||+|++++   +|
T Consensus         1 M~--~~~pRVn~~~L~~~~gk~VrivGkv~~~~~~g~~~~l~~~d~~~V~v~l~~~~~~~~~~~vEviG~V~~~~~~~~i   78 (109)
T PF08661_consen    1 MD--APTPRVNGSMLSQFVGKTVRIVGKVESVDPDGGSATLSTSDGGQVTVSLNPPSDEELSKYVEVIGKVNDDGTVLSI   78 (109)
T ss_dssp             GG--S--EEE-GGGGGGGTTSEEEEEEEEEEE-TTSSEEEEE-TTS-EEEEEESS--SS---SEEEEEEEE-TTS-EEEE
T ss_pred             CC--CCcceECHHHHHhhCCCeEEEEEEEeeEcCCCCEEEEEcCCCCEEEEEeCCCCCCCCCCEEEEEEEEcCCCCceEE
Confidence            78  67999999999999999999999999998  9999999999999999999883 45799999999999999   99


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHhccccCCC
Q 033976           75 RAEIWNNFGNTFDTQSYNQLCQLANGEFKHLF  106 (107)
Q Consensus        75 ~~~~~~~~g~~fD~~~yn~lv~l~~~~~~~lF  106 (107)
                      ++..+++||++||+++||++|+++| +||+||
T Consensus        79 ~~~~~~~~g~~~D~~~y~~lv~l~~-~~p~lf  109 (109)
T PF08661_consen   79 RYFSFTDFGDDFDMDLYNELVQLTH-KFPELF  109 (109)
T ss_dssp             EEEE---SSS---HHHHHHHHHHHH-HSGGGS
T ss_pred             EEEEeccCCCCcCHHHHHHHHHHHh-hCCccC
Confidence            9999999999999999999999999 999998

; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) Back     alignment and domain information
>PF15490 Ten1_2: Telomere-capping, CST complex subunit Back     alignment and domain information
>PF12658 Ten1: Telomere capping, CST complex subunit; InterPro: IPR024222 Stn1 and Ten1 are DNA-binding proteins with specificity for telomeric DNA substrates and both protect chromosome termini from unregulated resection and regulate telomere length Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK10053 hypothetical protein; Provisional Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00156 conserved hypothetical protein TIGR00156 Back     alignment and domain information
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>COG3111 Periplasmic protein with OB-fold [Function unknown] Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK14639 hypothetical protein; Provisional Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA Back     alignment and domain information
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria Back     alignment and domain information
>PRK14630 hypothetical protein; Provisional Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK14633 hypothetical protein; Provisional Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14638 hypothetical protein; Provisional Back     alignment and domain information
>PRK14631 hypothetical protein; Provisional Back     alignment and domain information
>PF14485 DUF4431: Domain of unknown function (DUF4431) Back     alignment and domain information
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold Back     alignment and domain information
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK14636 hypothetical protein; Provisional Back     alignment and domain information
>PRK14647 hypothetical protein; Provisional Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PF13567 DUF4131: Domain of unknown function (DUF4131) Back     alignment and domain information
>TIGR00739 yajC preprotein translocase, YajC subunit Back     alignment and domain information
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>PRK05585 yajC preprotein translocase subunit YajC; Validated Back     alignment and domain information
>PRK14634 hypothetical protein; Provisional Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [] Back     alignment and domain information
>PRK14646 hypothetical protein; Provisional Back     alignment and domain information
>PRK14637 hypothetical protein; Provisional Back     alignment and domain information
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK00092 ribosome maturation protein RimP; Reviewed Back     alignment and domain information
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
2pi2_E142 Replication protein A 14 kDa subunit; FULL-length 2e-30
3kdf_A121 Replication protein A 14 kDa subunit; wheat GERM c 5e-29
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C Length = 142 Back     alignment and structure
 Score =  104 bits (261), Expect = 2e-30
 Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 4   SNPAVFVNGGLMRMYVGRRIRTVIQV--IQSDGGGVTGKSTDGHQLVVKGPQP-GFPLTT 60
             P   +N G++  ++ + +  V ++  I   G        +G    ++  +P    ++ 
Sbjct: 27  DLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISG 86

Query: 61  FVEVIGIADTDRSIRAEIWNNFG---NTFDTQSYNQLCQLANGEFKHLF 106
            VEV+G      +I    +  F    + FD   YN+  ++ + +F   +
Sbjct: 87  IVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIH-DFPQFY 134
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 1quq_B 1l1o_A Length = 121 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query107
3kdf_A121 Replication protein A 14 kDa subunit; wheat GERM c 100.0
2pi2_E142 Replication protein A 14 kDa subunit; FULL-length 100.0
4gop_A114 Putative uncharacterized protein; OB fold, ssDNA b 100.0
3kf6_B105 Protein TEN1; OB fold, chromosomal protein, DNA-bi 97.67
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 95.72
1j6q_A136 Cytochrome C maturation protein E; all-beta protei 95.33
3mxn_B150 RECQ-mediated genome instability protein 2; bloom 95.19
3kf6_A159 Protein STN1; OB fold, chromosomal protein, DNA-bi 95.09
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 95.02
3kf8_B123 Protein TEN1; OB fold; 2.40A {Candida tropicalis m 94.83
1n9w_A 422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 94.47
3m4p_A 456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 94.27
2kct_A94 Cytochrome C-type biogenesis protein CCME; solutio 93.5
1sr3_A136 APO-CCME; OB fold, beta barrel, flexible C-termina 91.99
3kf8_A220 Protein STN1; OB fold; 2.40A {Candida tropicalis m 91.92
1wyd_A 429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 91.56
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 91.52
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 91.48
1nnx_A109 Protein YGIW; structural genomics, hypothetical pr 91.41
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 90.6
3nem_A 438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 90.14
1e1o_A 504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 89.75
4ex5_A 529 Lysine--tRNA ligase; structural genomics, niaid, n 89.51
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 89.46
1x54_A 434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 89.03
1eov_A 487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 88.89
2xgt_A 435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 88.69
3a74_A 493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 88.49
3i7f_A 548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 86.49
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 83.58
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A Back     alignment and structure
Probab=100.00  E-value=4e-43  Score=240.51  Aligned_cols=104  Identities=19%  Similarity=0.363  Sum_probs=99.0

Q ss_pred             CCCCCCceeeehhhhhccCCCeEEEEEEEeec--cCCeEEEEeCCCCEEEEEccCC-CCCCCCEEEEEEEECCCCCEEEE
Q 033976            1 MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQS--DGGGVTGKSTDGHQLVVKGPQP-GFPLTTFVEVIGIADTDRSIRAE   77 (107)
Q Consensus         1 Md~~~~~pRVn~~~L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~g~V~v~l~~~-~~~~~~~vEViG~V~~~~si~~~   77 (107)
                      ||  .|+||||++||++|+||+|||||||.++  +|++++++|+||++|+|+|++| ++++++||||||+|+++++|+++
T Consensus         5 m~--~p~pRVn~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~~l~~~vEViG~V~~~~tI~~~   82 (121)
T 3kdf_A            5 MD--LPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTAKATILCT   82 (121)
T ss_dssp             GG--SCCEEECGGGGGGGTTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCCCSEEEEEEEECTTSCEEEE
T ss_pred             cc--CCcceECHHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEEEECCCCeEEEE
Confidence            55  5799999999999999999999999988  5899999999999999999998 57789999999999999999999


Q ss_pred             EEEeCCCC---CCHHHHHHHHHHHhccccCCCC
Q 033976           78 IWNNFGNT---FDTQSYNQLCQLANGEFKHLFI  107 (107)
Q Consensus        78 ~~~~~g~~---fD~~~yn~lv~l~~~~~~~lF~  107 (107)
                      ++++||++   ||+++||++|+++| +||+|||
T Consensus        83 ~~~~fg~~~~~fD~~~yn~lv~l~~-~~~~lf~  114 (121)
T 3kdf_A           83 SYVQFKEDSHPFDLGLYNEAVKIIH-DFPQFYP  114 (121)
T ss_dssp             EEEECCCSSSCCCHHHHHHHHHHHH-HCGGGSC
T ss_pred             EEEecCCCCcccCHHHHHHHHHHHh-cCCcccc
Confidence            99999999   99999999999999 7999997
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C Back     alignment and structure
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A Back     alignment and structure
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B Back     alignment and structure
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str} Back     alignment and structure
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 Back     alignment and structure
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 107
d2pi2e1115 b.40.4.3 (E:3-117) Replication protein A 14 KDa (R 2e-29
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 14 KDa (RPA14) subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (249), Expect = 2e-29
 Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 6   PAVFVNGGLMRMYVGRRIRTVIQVIQ--SDGGGVTGKSTDGHQLVVKGPQP-GFPLTTFV 62
           P   +N G++  ++ + +  V ++ +    G        +G    ++  +P    ++  V
Sbjct: 6   PRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIV 65

Query: 63  EVIGIADTDRSIRAEIWNNFG---NTFDTQSYNQLCQLANGEFKHLF 106
           EV+G      +I    +  F    + FD   YN+  ++ + +F   +
Sbjct: 66  EVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIH-DFPQFY 111

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query107
d2pi2e1115 Replication protein A 14 KDa (RPA14) subunit {Huma 100.0
d1n9wa193 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.06
d1b8aa1103 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 94.27
d1e1oa1143 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 93.76
d2pi2a1128 Replication protein A 32 KDa subunit (RPA32) fragm 93.75
d1l0wa1104 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 92.94
d1nnxa_106 Hypothetical protein YgiW {Escherichia coli [TaxId 91.11
d2mysa146 Myosin S1 fragment, N-terminal domain {Chicken (Ga 90.19
d1c0aa1106 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 89.89
d1ib8a174 Hypothetical protein SP14.3 (SP0552) {Streptococcu 89.88
d1eova1134 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 89.78
d1j6qa_100 Heme chaperone CcmE {Shewanella putrefaciens [TaxI 87.3
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 14 KDa (RPA14) subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=228.98  Aligned_cols=104  Identities=19%  Similarity=0.363  Sum_probs=97.7

Q ss_pred             CCCCCCceeeehhhhhccCCCeEEEEEEEeec--cCCeEEEEeCCCCEEEEEccCC-CCCCCCEEEEEEEECCCCCEEEE
Q 033976            1 MDTSNPAVFVNGGLMRMYVGRRIRTVIQVIQS--DGGGVTGKSTDGHQLVVKGPQP-GFPLTTFVEVIGIADTDRSIRAE   77 (107)
Q Consensus         1 Md~~~~~pRVn~~~L~~~~Gk~VrlvGkV~~~--~g~~~~~~s~D~g~V~v~l~~~-~~~~~~~vEViG~V~~~~si~~~   77 (107)
                      ||  .|+||||++||++|+||+||+||||.++  +|.+++++|+||++|+|.|++| ++++++||||||+|+++.+|+|.
T Consensus         3 ~~--~p~pRVn~~~L~~~~Gk~V~ivGkV~~v~~~g~~~~~~s~D~~~V~v~l~~~~~~~~~~~vEViG~V~~~~sI~~~   80 (115)
T d2pi2e1           3 MD--LPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTAKATILCT   80 (115)
T ss_dssp             GG--SCCEEECGGGGGGSTTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCCCSEEEEEEEECTTSCEEEE
T ss_pred             cc--CCcceECHHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEcCCCCEEEEEeCCCCCCccCCeEEEEEEECCCCcEEEE
Confidence            55  5799999999999999999999999986  4789999999999999999998 67889999999999999999999


Q ss_pred             EEEeCCC---CCCHHHHHHHHHHHhccccCCCC
Q 033976           78 IWNNFGN---TFDTQSYNQLCQLANGEFKHLFI  107 (107)
Q Consensus        78 ~~~~~g~---~fD~~~yn~lv~l~~~~~~~lF~  107 (107)
                      ++++||+   +||+++||++|+++| +||+||.
T Consensus        81 ~~~~fg~~~~~fD~~~yn~lv~l~~-~~~~~f~  112 (115)
T d2pi2e1          81 SYVQFKEDSHPFDLGLYNEAVKIIH-DFPQFYP  112 (115)
T ss_dssp             EEEECCCSSSCCCHHHHHHHHHHHH-HCGGGSC
T ss_pred             EEEEcCCCccccCHHHHHHHHHHHH-hChhhcc
Confidence            9999984   699999999999999 8999994
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure