Citrus Sinensis ID: 033983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEEccEEEEEEEEEEEEccccccccccEEccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEccccEEEEEEEEEccccccccccccEcccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msgkgkrkeeeeydsdgsvdghappkkasktdssddsddivVCEISKNRRVSVRNWQGKVWVDIREFYVKEgkkfpgkkgislSVDQWNTLRDHVEEINKALGDNS
Flexible Loop (DISEMBL)
msgkgkrkeeeeydsdgsvdghappkkasktdssddsddivvceisknrrvsvrnwqgkvwvDIREFYVKegkkfpgkkgislsvdqwntLRDHVEEINKALGDNS
Low Complexity Region (SEG)
MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTdssddsddIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS
Disordered region (IsUnstruct)
***************************************IVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHV***********
Disordered Region (DISOPRED)
******************************************CEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALG***
Disordered Region (DISEMBL)
**************************************DIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS
Disordered Region (DISPRO)
*************************************DDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALG*N*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
O65154	107	RNA polymerase II transcr	yes	no	1.0	0.990	0.700	3e-36
O65155	165	RNA polymerase II transcr	no	no	0.641	0.412	0.426	5e-12
Q5ZK63	126	Activated RNA polymerase	no	no	0.679	0.571	0.434	3e-10
P11031	127	Activated RNA polymerase	yes	no	0.575	0.480	0.435	2e-09
Q63396	127	Activated RNA polymerase	yes	no	0.575	0.480	0.435	2e-09
Q5R6D0	127	Activated RNA polymerase	yes	no	0.575	0.480	0.451	4e-09
Q4R947	127	Activated RNA polymerase	N/A	no	0.575	0.480	0.451	4e-09
P53999	127	Activated RNA polymerase	yes	no	0.575	0.480	0.451	4e-09
Q9VLR5	110	RNA polymerase II transcr	yes	no	0.509	0.490	0.5	1e-08
P87294	136	Putative RNA polymerase I	yes	no	0.783	0.610	0.313	2e-08

>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 85/107 (79%), Gaps = 1/107 (0%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
           MS +GKRK+E+   SD   + HAP KK +K  D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 60  VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
           +W+DIREFYVK+GK  PGKKGISLSVDQWNTLR+H E+I KAL D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.
Arabidopsis thaliana (taxid: 3702)

>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 48/68 (70%)

Query: 35  DDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDH 94
           DD  D+++C +S  RRV+++ ++GK  V IRE+Y K+GK+ P  KGISL+ +QW+T + +
Sbjct: 91  DDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKN 150

Query: 95  VEEINKAL 102
           +  I  A+
Sbjct: 151 MPAIENAV 158

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 56/76 (73%), Gaps = 4/76 (5%)

Query: 28  ASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVD 86
           +SK  S+ D +   + +I K R VSVR+++GKV +DIRE+++ +EG+  PG+KGISL+ +
Sbjct: 51  SSKQSSNRDEN---MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPE 107

Query: 87  QWNTLRDHVEEINKAL 102
           QWN L++ + +I+ A+
Sbjct: 108 QWNQLKEQISDIDDAV 123

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Gallus gallus (taxid: 9031)

>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GK+ +DIRE+++  EG+  PG+KGISL+++QW+ L++ + +I+ 
Sbjct: 63  MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122

Query: 101 AL 102
           A+
Sbjct: 123 AV 124

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Mus musculus (taxid: 10090)

>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=2 SV=3

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GK+ +DIRE+++  EG+  PG+KGISL+++QW+ L++ + +I+ 
Sbjct: 63  MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122

Query: 101 AL 102
           A+
Sbjct: 123 AV 124

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Rattus norvegicus (taxid: 10116)

>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii GN=SUB1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ 
Sbjct: 63  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122

Query: 101 AL 102
           A+
Sbjct: 123 AV 124

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Pongo abelii (taxid: 9601)

>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis GN=SUB1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ 
Sbjct: 63  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122

Query: 101 AL 102
           A+
Sbjct: 123 AV 124

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Macaca fascicularis (taxid: 9541)

>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens GN=SUB1 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ 
Sbjct: 63  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122

Query: 101 AL 102
           A+
Sbjct: 123 AV 124

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Homo sapiens (taxid: 9606)

>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila melanogaster GN=Ssb-c31a PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 49  RRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
           R+V +  ++G+  VDIREFY K G+  PGKKGISLS+ QW  L +  EE+ +A+
Sbjct: 55  RQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEVAEEVTRAI 108

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA (By similarity). Binds specifically to the NssBF element, a short nucleotide sequence of the 1731 retrotransposon, to repress promoter activity.

Drosophila melanogaster (taxid: 7227)

>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16A10.02 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%)

Query: 21  GHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
           G     K  KT+   D +       ++ +R+++  ++G  +V IRE+Y K+G   PGKKG
Sbjct: 10  GDKASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKG 69

Query: 81  ISLSVDQWNTLRDHVEEINKALG 103
           I+L++++W  L+  + E++ +LG
Sbjct: 70  IALNINEWKKLKQLIHEVDDSLG 92

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
297811013	107	predicted protein [Arabidopsis lyrata su	1.0	0.990	0.700	3e-35
15242365	107	RNA polymerase II transcriptional coacti	1.0	0.990	0.700	1e-34
388504274	106	unknown [Lotus japonicus]	0.990	0.990	0.657	6e-34
225438387	103	PREDICTED: RNA polymerase II transcripti	0.971	1.0	0.698	5e-33
449457317	104	PREDICTED: RNA polymerase II transcripti	0.952	0.971	0.669	1e-30
224093558	120	predicted protein [Populus trichocarpa]	0.971	0.858	0.609	1e-28
255550572	84	RNA polymerase II transcriptional coacti	0.783	0.988	0.752	3e-28
357464751	107	RNA polymerase II transcriptional coacti	0.981	0.971	0.590	7e-28
351722133	105	uncharacterized protein LOC100499936 [Gl	0.990	1.0	0.632	1e-27
359806581	105	uncharacterized protein LOC100820368 [Gl	0.990	1.0	0.622	8e-27

>gi|297811013|ref|XP_002873390.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319227|gb|EFH49649.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 87/107 (81%), Gaps = 1/107 (0%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
           MS +GKRK+E+   SD   + HAP KK +K  DSSD+SDDIVVC +SKNRRVSVRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESESHAPAKKVAKPADSSDESDDIVVCNLSKNRRVSVRNWNGK 60

Query: 60  VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
           +W+DIREFYVK+GK  PGKKGISLSVDQWNTLR+H E+I KAL D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242365|ref|NP_196487.1| RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana] gi|37079587|sp|O65154.1|KIWI_ARATH RecName: Full=RNA polymerase II transcriptional coactivator KIWI gi|2997684|gb|AAC08574.1| putative transcriptional co-activator [Arabidopsis thaliana] gi|9955512|emb|CAC05451.1| putative transcriptional co-activator (KIWI) [Arabidopsis thaliana] gi|28466805|gb|AAO44011.1| At5g09250 [Arabidopsis thaliana] gi|110736129|dbj|BAF00036.1| putative transcriptional co-activator [Arabidopsis thaliana] gi|225898901|dbj|BAH30581.1| hypothetical protein [Arabidopsis thaliana] gi|332003981|gb|AED91364.1| RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 85/107 (79%), Gaps = 1/107 (0%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
           MS +GKRK+E+   SD   + HAP KK +K  D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 60  VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
           +W+DIREFYVK+GK  PGKKGISLSVDQWNTLR+H E+I KAL D S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504274|gb|AFK40203.1| unknown [Lotus japonicus]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
           MSGKGK++++ +  SD   D HAPPKK+ K DS +D D IVVCEISKNRRVSVRNWQG++
Sbjct: 1   MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61  WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN 105
            VDI EFYVK+GK+ PGKKGISL++DQWN LR+H+EEI+KA+ ++
Sbjct: 61  VVDILEFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNES 105

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438387|ref|XP_002275126.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI [Vitis vinifera] gi|147846591|emb|CAN79502.1| hypothetical protein VITISV_022689 [Vitis vinifera] gi|296082597|emb|CBI21602.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 87/106 (82%), Gaps = 3/106 (2%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
           MS  GKRK+   Y SDG  D HAP KK+S  DS DD D+I+VCEIS+NRRVSVRNWQGKV
Sbjct: 1   MSKWGKRKQS--YASDGDSDDHAPSKKSSMKDS-DDPDNIIVCEISRNRRVSVRNWQGKV 57

Query: 61  WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
            VDIREFYVK+GK+ PGKKGISL++DQWN LRDHV EI++A+ DN+
Sbjct: 58  QVDIREFYVKDGKQMPGKKGISLTMDQWNVLRDHVNEIDEAVADNA 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457317|ref|XP_004146395.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Cucumis sativus] gi|449527765|ref|XP_004170880.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Cucumis sativus]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 84/106 (79%), Gaps = 5/106 (4%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
           MS  GKRK +E    D   +G APP K  K DS DD+D+IVVCE+SKNRRV VRNWQGK+
Sbjct: 1   MSASGKRKGDE----DDVSEGDAPPSKTFKKDS-DDTDEIVVCELSKNRRVMVRNWQGKI 55

Query: 61  WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
            VDIREFYVK+GK+ PGKKGISLS+DQWN L +HVEEI+KA+ +NS
Sbjct: 56  VVDIREFYVKDGKQMPGKKGISLSLDQWNVLLNHVEEIDKAVNENS 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093558|ref|XP_002309936.1| predicted protein [Populus trichocarpa] gi|222852839|gb|EEE90386.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 7/110 (6%)

Query: 1   MSGKGKRK-----EEEEYDSDGSVDGHAPPKKASKTD--SSDDSDDIVVCEISKNRRVSV 53
           MSG+G ++     EEE   +D +     P KK +K D  SSD+SD+IVVCEI +NRRV+V
Sbjct: 9   MSGRGGKRAAAAREEEGSGADDNYAQQPPAKKPTKADNSSSDNSDEIVVCEIGRNRRVTV 68

Query: 54  RNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALG 103
           RNW+GK+ VDIREFY K+G   PGKKGI+LS+DQWN LRDHVEEI+KALG
Sbjct: 69  RNWRGKINVDIREFYPKDGNLLPGKKGITLSLDQWNMLRDHVEEIDKALG 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550572|ref|XP_002516336.1| RNA polymerase II transcriptional coactivator KIWI, putative [Ricinus communis] gi|223544566|gb|EEF46083.1| RNA polymerase II transcriptional coactivator KIWI, putative [Ricinus communis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 76/85 (89%), Gaps = 2/85 (2%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
          MSG+GKRKEEE    D S DG APPKKASKT ++DDSDDIVVCEISKNRRV+VRNWQGKV
Sbjct: 1  MSGRGKRKEEEGASDDNS-DGDAPPKKASKT-TTDDSDDIVVCEISKNRRVTVRNWQGKV 58

Query: 61 WVDIREFYVKEGKKFPGKKGISLSV 85
          W+DIREFY+K+GK+ PGKKGI++++
Sbjct: 59 WIDIREFYLKDGKQLPGKKGITVTL 83

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464751|ref|XP_003602657.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula] gi|358348306|ref|XP_003638188.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula] gi|355491705|gb|AES72908.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula] gi|355504123|gb|AES85326.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 1/105 (0%)

Query: 2   SGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVW 61
           +GKGK++EE ++ S+   + HAPPKK +K D+ DDS DIV  EI KNRRVSVR W  + W
Sbjct: 4   TGKGKKREELDHASEDDTESHAPPKKTAKKDTEDDSGDIVF-EIGKNRRVSVRTWNKQPW 62

Query: 62  VDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
           VDIREFY K+GK+ PGKKGISL+++QW  LRDH+EEI+ A+ + S
Sbjct: 63  VDIREFYTKDGKQLPGKKGISLNMEQWIVLRDHIEEIDNAVKEKS 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722133|ref|NP_001238257.1| uncharacterized protein LOC100499936 [Glycine max] gi|255627821|gb|ACU14255.1| unknown [Glycine max]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 86/106 (81%), Gaps = 1/106 (0%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
           MSGK KR++++      S +GHAPPKK+ K DS DD D I VCEI KNRRV+VRNW+G +
Sbjct: 1   MSGKAKRRDDDGASDADS-EGHAPPKKSLKKDSDDDPDSITVCEILKNRRVAVRNWKGSI 59

Query: 61  WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
            VDIREFYV++GK+ PG+KGISL++DQWN LR+HVEEI+KA+ +NS
Sbjct: 60  MVDIREFYVEDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAINENS 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806581|ref|NP_001241012.1| uncharacterized protein LOC100820368 [Glycine max] gi|255637253|gb|ACU18957.1| unknown [Glycine max]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
           MSGK KR+++++     S +GHAPP K+ K DS DD D + +CEISKNRRV+VRNW+G +
Sbjct: 1   MSGKAKRRDDDDASDADS-EGHAPPMKSLKKDSDDDPDSVTICEISKNRRVAVRNWKGSI 59

Query: 61  WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
            VDIREFYVK+GK+ PG+KGISL++DQWN LR+HVEEI+KA+ +NS
Sbjct: 60  MVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHVEEIDKAVNENS 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2184747	107	KIWI [Arabidopsis thaliana (ta	1.0	0.990	0.644	8.5e-33
TAIR|locus:2184732	138	AT5G09240 [Arabidopsis thalian	0.801	0.615	0.461	1.1e-20
TAIR|locus:2123416	165	KELP [Arabidopsis thaliana (ta	0.594	0.381	0.412	3.3e-13
ZFIN|ZDB-GENE-050522-151	123	sub1a "SUB1 homolog a (S. cere	0.915	0.788	0.37	9.1e-13
UNIPROTKB|J9NRQ9	125	SUB1 "Uncharacterized protein"	0.556	0.472	0.45	2.2e-12
UNIPROTKB|Q5ZK63	126	SUB1 "Activated RNA polymerase	0.933	0.785	0.34	1.3e-11
ASPGD|ASPL0000000236	168	AN5806 [Emericella nidulans (t	0.556	0.351	0.508	5.8e-11
MGI|MGI:104811	127	Sub1 "SUB1 homolog (S. cerevis	0.556	0.464	0.45	5.8e-11
RGD|621582	127	Sub1 "SUB1 homolog (S. cerevis	0.556	0.464	0.45	5.8e-11
UNIPROTKB|A7YWC6	127	SUB1 "Uncharacterized protein"	0.556	0.464	0.466	1.2e-10

TAIR|locus:2184747 KIWI [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 69/107 (64%), Positives = 79/107 (73%)

Query:     1 MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTXXXXXXXX-IVVCEISKNRRVSVRNWQGK 59
             MS +GKRK+E+   SD   + HAP KK +K          IVVC ISKNRRVSVRNW GK
Sbjct:     1 MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query:    60 VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDNS 106
             +W+DIREFYVK+GK  PGKKGISLSVDQWNTLR+H E+I KAL D S
Sbjct:    61 IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2184732 AT5G09240 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 42/91 (46%), Positives = 57/91 (62%)

Query:     1 MSGKGKRKEEEEYDSDGSVDG--HAPPKKASKTXXXXXXXXIVVCEISKNRRVSVRNWQG 58
             MS  GKRK+E+   SD   +   HAPPKK +K         I +C + KNRRV VRN  G
Sbjct:     1 MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIED--IFICNLDKNRRVFVRNCNG 58

Query:    59 KVWVDIREFYVKEGKKFP--GKKGISLSVDQ 87
             ++W+ IR+F+VK+G   P   K+GISLS++Q
Sbjct:    59 RIWIAIRQFFVKDGITLPCNSKQGISLSLEQ 89

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2123416 KELP [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 26/63 (41%), Positives = 45/63 (71%)

Query:    40 IVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEIN 99
             +++C +S  RRV+++ ++GK  V IRE+Y K+GK+ P  KGISL+ +QW+T + ++  I 
Sbjct:    96 LIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIE 155

Query:   100 KAL 102
              A+
Sbjct:   156 NAV 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050522-151 sub1a "SUB1 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 37/100 (37%), Positives = 60/100 (60%)

Query:     4 KGKRKEEEEYDSDGSVDGHAPPKKASKTXXXXXXXXIVVCEISKNRRVSVRNWQGKVWVD 63
             K KRK++   +             ASK+        +   +I K R VSVR+++GKV +D
Sbjct:    23 KAKRKKQATPEKPSKKQKSGESSSASKSSSSNKNDNMF--QIGKMRYVSVRDFKGKVLID 80

Query:    64 IREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             IRE+++ +EG+  PG+KGISL+ +QWN L++ + EI+ A+
Sbjct:    81 IREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISEIDDAV 120

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|J9NRQ9 SUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 27/60 (45%), Positives = 47/60 (78%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             +I K R +SVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ A+
Sbjct:    63 QIGKMRYLSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAV 122

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q5ZK63 SUB1 "Activated RNA polymerase II transcriptional coactivator p15" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/100 (34%), Positives = 59/100 (59%)

Query:     4 KGKRKEEEEYDSDGSVDGHAPPKKASKTXXXXXXXXIVVCEISKNRRVSVRNWQGKVWVD 63
             K KRK++   +            K + +          + +I K R VSVR+++GKV +D
Sbjct:    24 KAKRKKQAAPEKPVKKQKTGESSKGAASSKQSSNRDENMFQIGKMRYVSVRDFKGKVLID 83

Query:    64 IREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             IRE+++ +EG+  PG+KGISL+ +QWN L++ + +I+ A+
Sbjct:    84 IREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDDAV 123

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000000236 AN5806 [Emericella nidulans (taxid:162425)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             EISK RRV++ +++GK  V+IRE+Y K+G++ PGKKGISL +DQ+++L   + EI   L
Sbjct:    58 EISKMRRVTISSFRGKTMVNIREYYEKDGEELPGKKGISLPIDQFSSLVTLLPEIEIVL 116

GO:0005575 "cellular_component" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

MGI|MGI:104811 Sub1 "SUB1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 27/60 (45%), Positives = 48/60 (80%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             +I K R VSVR+++GK+ +DIRE+++  EG+  PG+KGISL+++QW+ L++ + +I+ A+
Sbjct:    65 QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAV 124

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

RGD|621582 Sub1 "SUB1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 27/60 (45%), Positives = 48/60 (80%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             +I K R VSVR+++GK+ +DIRE+++  EG+  PG+KGISL+++QW+ L++ + +I+ A+
Sbjct:    65 QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAV 124

GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

UNIPROTKB|A7YWC6 SUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 28/60 (46%), Positives = 47/60 (78%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ A+
Sbjct:    65 QIGKMRYVSVRDFKGKVLIDIREYWMDAEGEMKPGRKGISLNPEQWSQLKEQISDIDDAV 124

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65154	KIWI_ARATH	No assigned EC number	0.7009	1.0	0.9906	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0006_830	annotation not avaliable (107 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_801217.1	annotation not avaliable (88 aa)				•					0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam02229	81	pfam02229, PC4, Transcriptional Coactivator p15 (P	2e-32

>gnl|CDD|216939 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)

 Score =  108 bits (271), Expect = 2e-32
 Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 2/81 (2%)

Query: 24  PPKKASKTDSSDDSDDI--VVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGI 81
           P KK+   +SS  SD    +  E+SKNRRV+V  ++GK  VDIRE+Y K+G+  PGKKGI
Sbjct: 1   PVKKSKSEESSKGSDAEGDIFFELSKNRRVTVSEFKGKTLVDIREYYEKDGEMLPGKKGI 60

Query: 82  SLSVDQWNTLRDHVEEINKAL 102
           SL+++QWN L++H+ EI+ A+
Sbjct: 61  SLTLEQWNALKEHIPEIDDAI 81

p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG2712	108	consensus Transcriptional coactivator [Transcripti	100.0
PF02229	56	PC4: Transcriptional Coactivator p15 (PC4); InterP	99.92
COG4443	72	Uncharacterized protein conserved in bacteria [Fun	93.04

>KOG2712 consensus Transcriptional coactivator [Transcription]

Probab=100.00  E-value=4.4e-35  Score=206.88  Aligned_cols=103  Identities=50%  Similarity=0.827  Sum_probs=85.0

Q ss_pred             CCCcccccccccCC--CCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCceEEEEeeeCCceEEEeEEEEecCCeecCcccc
Q 033983            3 GKGKRKEEEEYDSD--GSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG   80 (106)
Q Consensus         3 ~~~k~k~~~~~~sd--~~~~~~~~~Kk~~~~~~~~~~~~~~~~~Ls~~rrVtV~~FkG~~~VdIREyY~kdGe~~PgKKG   80 (106)
                      .++.++....+.++  ++...++|+++..+.. .+++++.++|+|+++|||||++|+|+.||||||||.++|+++||+||
T Consensus         2 s~~~~~~~~~r~~~~~~~~~~~a~~~~v~k~~-d~~s~~~~i~~l~~~RrVtV~eFkGk~~VdIREyY~kdG~mlPgkKG   80 (108)
T KOG2712|consen    2 SSSSRKDVDSRVDKKLKEKKSHAPNKKVEKPK-DDDSEDDNIFNLGKNRRVTVREFKGKILVDIREYYVKDGKMLPGKKG   80 (108)
T ss_pred             ccccccCccccccccccchhhhCCCccccCcc-cCCcCccceeecCCceEEehhhcCCceEEehhHhhhccCccccCccc
Confidence            34555555444444  4566677776655532 22566678999999999999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHHhHHHHHHHhhcCC
Q 033983           81 ISLSVDQWNTLRDHVEEINKALGDNS  106 (106)
Q Consensus        81 ISL~~eqw~~L~~~~~~Id~ai~~~~  106 (106)
                      ||||++||..|++++++||+||.+|+
T Consensus        81 ISLs~~qW~~Lk~~~~eId~Al~~l~  106 (108)
T KOG2712|consen   81 ISLSLEQWSKLKEHIEEIDKALRKLS  106 (108)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999885

>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []

Probab=99.92  E-value=2.7e-25  Score=140.17  Aligned_cols=54  Identities=46%  Similarity=0.861  Sum_probs=49.2

Q ss_pred             EEEcCCceEEEEeeeCCceEEEeEEEEec-CCeecCcccceecCHHHHHHHHHhH
Q 033983           42 VCEISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGISLSVDQWNTLRDHV   95 (106)
Q Consensus        42 ~~~Ls~~rrVtV~~FkG~~~VdIREyY~k-dGe~~PgKKGISL~~eqw~~L~~~~   95 (106)
                      +|+++.+++|+|++|+|++|||||+||.+ +|+|+||+|||||+++||.+|++++
T Consensus         2 ~~~~~~~~rv~v~~fkG~~~vdIRe~y~~~~g~~~P~kKGIsL~~~q~~~l~~~l   56 (56)
T PF02229_consen    2 IKNLGEKRRVSVSEFKGKPYVDIREWYEKKDGEWKPTKKGISLTPEQWKELKEAL   56 (56)
T ss_dssp             EETTEEEEEEEEEEETTSEEEEEEEEETTSSS-EEEEEEEEEE-HHHHHHHHHH-
T ss_pred             cccCCCeEEEEEEEeCCeEEEEEEeeEEcCCCcCcCcCCEEEcCHHHHHHHHhhC
Confidence            57899999999999999999999999997 8999999999999999999999874

The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.

>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.04  E-value=0.059  Score=35.95  Aligned_cols=40  Identities=30%  Similarity=0.604  Sum_probs=31.0

Q ss_pred             eeeCCce-EEEeEEEEecCCeecCcccceecCHHHHHHHHHhHH
Q 033983           54 RNWQGKV-WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVE   96 (106)
Q Consensus        54 ~~FkG~~-~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~   96 (106)
                      -.|+|++ -.|||.|-.+.-  +-| |||+|+.+++..|++.+.
T Consensus        30 vSwNg~~~KyDiR~Wspdh~--KMG-KGiTLt~eE~~~l~d~l~   70 (72)
T COG4443          30 VSWNGRPPKYDIRAWSPDHS--KMG-KGITLTNEEFKALKDLLN   70 (72)
T ss_pred             cccCCCCCcCcccccCcchh--hhc-CceeecHHHHHHHHHHHh
Confidence            3578876 789999976532  335 899999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1pcf_A	66	Human Transcriptional Coactivator Pc4 C-Terminal Do		5e-10
4agh_A	158	Structural Features Of Ssdna Binding Protein Mosub1		4e-08

>pdb|1PCF|A Chain A, Human Transcriptional Coactivator Pc4 C-Terminal Domain Length = 66

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ 
Sbjct: 2   MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 61
Query: 101 AL 102
           A+
Sbjct: 62  AV 63

>pdb|4AGH|A Chain A, Structural Features Of Ssdna Binding Protein Mosub1 From Magnaporthe Oryzae Length = 158

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 6   KRKEEEEYDSDGSVDGHAP-PKKASKTXXXXXXXXIVVCE------ISKNRRVSVRNWQG 58
           KR  +EE  S GS     P P K +K+         V  E      IS  RRV +  ++ 
Sbjct: 5   KRARDEEAQSGGSEAETKPAPVKKAKSKASNPGGSQVDAEGNPFWEISDKRRVGISQFKK 64
Query: 59  KVWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
             +++IRE+Y   G+  PGKKGI L+VDQ+      +  IN  L
Sbjct: 65  MDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAEL 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	1e-24

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A Length = 66

 Score = 87.5 bits (217), Expect = 1e-24
 Identities = 28/62 (45%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 42  VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINK 100
           + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ 
Sbjct: 2   MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 61

Query: 101 AL 102
           A+
Sbjct: 62  AV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
4agh_A	158	Mosub1, transcription cofactor; ssDNA binding prot	100.0
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	100.0
3pm7_A	80	Uncharacterized protein; structural genomics, PSI-	96.38
4g06_A	79	Uncharacterized protein; structural genomics, PSI-	96.03
2l3a_A	82	Uncharacterized protein; structural genomics, PSI-	95.93
2ltd_A	80	Uncharacterized protein YDBC; structural genomics,	92.78

>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}

Probab=100.00  E-value=1.2e-35  Score=220.27  Aligned_cols=105  Identities=33%  Similarity=0.530  Sum_probs=66.4

Q ss_pred             CCCCCcccccccccC-CCCCCCCCCCCCCCCCCC-----CCCCCCcEEEEcCCceEEEEeeeCCceEEEeEEEEecCCee
Q 033983            1 MSGKGKRKEEEEYDS-DGSVDGHAPPKKASKTDS-----SDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKK   74 (106)
Q Consensus         1 ~~~~~k~k~~~~~~s-d~~~~~~~~~Kk~~~~~~-----~~~~~~~~~~~Ls~~rrVtV~~FkG~~~VdIREyY~kdGe~   74 (106)
                      |+.|.+.+.+...++ ++..+.++|.|+++....     ..+.++..+|+||++|||+|++|+|++||||||||+++|+|
T Consensus         1 Msskkr~~~~~~~~~~~~~~~~~~~~Kk~k~~~~~~~~~~~d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~   80 (158)
T 4agh_A            1 MTSKKRARDEEAQSGGSEAETKPAPVKKAKSKASNPGGSQVDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEM   80 (158)
T ss_dssp             -------------------------------------CCEECTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred             CCcccccchhhccccccccccccCCccccccccCCCCCCccCCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcC
Confidence            777766665543333 344444444454443311     12344557999999999999999999999999999999999


Q ss_pred             cCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983           75 FPGKKGISLSVDQWNTLRDHVEEINKALGDN  105 (106)
Q Consensus        75 ~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~  105 (106)
                      +||||||||+++||+.|+++++.|++||+++
T Consensus        81 ~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~  111 (158)
T 4agh_A           81 KPGKKGIGLTVDQYTAFLKAIPAINAELRSR  111 (158)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcccceecCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999865

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A

Probab=100.00  E-value=2.1e-33  Score=182.73  Aligned_cols=64  Identities=44%  Similarity=0.819  Sum_probs=62.0

Q ss_pred             EEEcCCceEEEEeeeCCceEEEeEEEE-ecCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983           42 VCEISKNRRVSVRNWQGKVWVDIREFY-VKEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN  105 (106)
Q Consensus        42 ~~~Ls~~rrVtV~~FkG~~~VdIREyY-~kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~  105 (106)
                      +|+||++|||+|++|+|++|||||||| .+||+++||||||||+++||++|++++++|++||++|
T Consensus         2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~   66 (66)
T 1pcf_A            2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL   66 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            789999999999999999999999999 5799999999999999999999999999999999876

>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}

Probab=96.38  E-value=0.006  Score=40.64  Aligned_cols=47  Identities=23%  Similarity=0.559  Sum_probs=36.4

Q ss_pred             ceEEEEeeeCCc-eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHH
Q 033983           48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEE   97 (106)
Q Consensus        48 ~rrVtV~~FkG~-~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~   97 (106)
                      .+-+.+-.|+|. +-.|||.|=.+  -.+.| |||+||.++...|++++..
T Consensus        24 ~KELNlVSWN~~~pKyDIR~W~pd--h~kMg-KGITLT~eE~~~Lk~~L~~   71 (80)
T 3pm7_A           24 RKELNLISWNGRPPKFDLREWAPD--HEKMG-KGITLTNEEFAELSKTIKS   71 (80)
T ss_dssp             EEEEEEECGGGCCCEEEEEEECTT--SSSEE-EEEEECHHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCCccccccCcc--hhhcc-CcceeCHHHHHHHHHHHHH
Confidence            456777788876 48999998443  22556 8999999999999988764

>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}

Probab=96.03  E-value=0.019  Score=38.13  Aligned_cols=46  Identities=26%  Similarity=0.447  Sum_probs=36.5

Q ss_pred             ceEEEEeeeCCce-EEEeEEEEecCCeecCcccceecCHHHHHHHHHhHH
Q 033983           48 NRRVSVRNWQGKV-WVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVE   96 (106)
Q Consensus        48 ~rrVtV~~FkG~~-~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~   96 (106)
                      .+-+..-.|.|+. -.|||.|=.+.  .+.| |||+||.++...|++++.
T Consensus        31 ~KELNlVSWN~~~pKyDIR~W~pdh--~kMg-KGITLT~eE~~~L~~~L~   77 (79)
T 4g06_A           31 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLSNEEFQTMVDAFK   77 (79)
T ss_dssp             EEEEEEEEETTCCCEEEEEEECTTS--SCBC-CCEEECHHHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCCccccccCccc--cccc-CccccCHHHHHHHHHHHc
Confidence            4667888898765 89999985442  3566 899999999999998775

>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*

Probab=95.93  E-value=0.025  Score=37.76  Aligned_cols=46  Identities=26%  Similarity=0.460  Sum_probs=34.8

Q ss_pred             ceEEEEeeeCCc-eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHH
Q 033983           48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVE   96 (106)
Q Consensus        48 ~rrVtV~~FkG~-~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~   96 (106)
                      .+-+..-.|.|. +-.|||.|=-+-  .+=| |||+||.+|...|++.+.
T Consensus        26 ~KELNlVSWNg~~pKyDIR~Wspdh--~kMG-KGITLT~eE~~~L~~~L~   72 (82)
T 2l3a_A           26 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLSNEEFQTMVDAFK   72 (82)
T ss_dssp             EEEEEEEEESSSCEEEEEEEECSTT--CCCC-CCEEECHHHHHHHHHHHH
T ss_pred             eEEEEEEeECCCCCCccccccCcch--hhcc-CcccccHHHHHHHHHHHH
Confidence            566777888876 489999983332  2334 899999999999988764

>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}

Probab=92.78  E-value=0.012  Score=39.20  Aligned_cols=47  Identities=23%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             ceEEEEeeeCCc-eEEEeEEEEecCCeecCcccceecCHHHHHHHHHhHHH
Q 033983           48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGISLSVDQWNTLRDHVEE   97 (106)
Q Consensus        48 ~rrVtV~~FkG~-~~VdIREyY~kdGe~~PgKKGISL~~eqw~~L~~~~~~   97 (106)
                      .+-+..-.|.|. +-.|||.|=-+-  .+=| |||+||.+|...|++.+..
T Consensus        24 ~KELNlVSWNg~~pKyDIR~Wspdh--~kMG-KGITLT~eE~~~L~~~Ln~   71 (80)
T 2ltd_A           24 RKELNRVSWNDAEPKYDIRTWSPDH--EKMG-KGITLSEEEFGVLLKELGN   71 (80)
Confidence            344566677765 489999984332  2234 8999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1pcfa_	66	d.18.1.1 (A:) Transcriptional coactivator PC4 C-te	2e-23

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (207), Expect = 2e-23
 Identities = 28/60 (46%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 44  EISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINKAL 102
           +I K R VSVR+++GKV +DIRE+++  EG+  PG+KGISL+ +QW+ L++ + +I+ A+
Sbjct: 4   QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1pcfa_	66	Transcriptional coactivator PC4 C-terminal domain	100.0

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=181.13  Aligned_cols=64  Identities=44%  Similarity=0.842  Sum_probs=62.1

Q ss_pred             EEEcCCceEEEEeeeCCceEEEeEEEEe-cCCeecCcccceecCHHHHHHHHHhHHHHHHHhhcC
Q 033983           42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGISLSVDQWNTLRDHVEEINKALGDN  105 (106)
Q Consensus        42 ~~~Ls~~rrVtV~~FkG~~~VdIREyY~-kdGe~~PgKKGISL~~eqw~~L~~~~~~Id~ai~~~  105 (106)
                      +|+||++|||||++|||++||||||||. +||+|+|||||||||++||+.|++++++|++||++|
T Consensus         2 ~~~L~~~rrvtV~~FkG~~~vdIReyY~dkdGe~~PgkKGIsL~~~qw~~l~~~~~~i~~ai~~l   66 (66)
T d1pcfa_           2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL   66 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeecCCcEEEEEEEECCcEEEEEEEEEECCCCCCCCCCCeEEECHHHHHHHHHHHHHHHHHHHhC
Confidence            7899999999999999999999999996 699999999999999999999999999999999986