Citrus Sinensis ID: 034031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKVAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT
Secondary Structure (PSIPRED)
cccccccccccHHHcccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccEEHHHHHHEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccHHcHHcccccccHcccccccccccHHEEEEccccccccEEEEEccHHHHHHHHcccccHHHHHHHHHHHHHcHEEEEEEEHEEEEccccccccc
Coil and Loop (DISEMBL)
masvsmamplssatqnrliqpssesflkplpvrpskaarflgkpksRARLQVQASLKEKVAEaagsglspslKNFLLSIVAGGVVLAAIVGAVIgvanfdpvkrt
Flexible Loop (DISEMBL)
masvsmamplssatqnrliqpssesflkplpvrpskaarflgkpksraRLQVQASLKEKVAEaagsglspsLKNFLLSIVAGGVVLAAIVGAVigvanfdpvkrt
Low Complexity Region (SEG)
MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKVAEAAGSGLSPSLKNFLLSivaggvvlaaivgavigvaNFDPVKRT
Disordered region (IsUnstruct)
***********************************************************************LKNFLLSIVAGGVVLAAIVGAVIGVANFD*****
Disordered Region (DISOPRED)
****S*************************************************************GLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDP****
Disordered Region (DISEMBL)
*****************LIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQ************SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT
Disordered Region (DISPRO)
*********************SS*SFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKVAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKVAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q2JN82	38	Photosystem II reaction c	yes	no	0.352	0.973	0.567	0.0002

>sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=psbX PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query: 68  LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 104
           ++PSL NFL S+VAG VVL A+ GA+I V+  D V+R
Sbjct: 1   MTPSLANFLWSLVAGAVVLGALFGAIIFVSQRDKVRR 37

Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.
Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
343887314	123	hypothetical protein [Citrus unshiu]	1.0	0.853	0.837	4e-46
224092099	124	predicted protein [Populus trichocarpa]	1.0	0.846	0.645	1e-31
296081701	123	unnamed protein product [Vitis vinifera]	0.990	0.845	0.653	1e-29
255546007	121	conserved hypothetical protein [Ricinus	0.942	0.818	0.606	4e-28
224122446	122	predicted protein [Populus trichocarpa]	0.952	0.819	0.573	2e-25
388522391	123	unknown [Lotus japonicus]	0.961	0.821	0.545	6e-25
118489056	122	unknown [Populus trichocarpa x Populus d	0.952	0.819	0.565	2e-24
224068412	121	predicted protein [Populus trichocarpa]	0.933	0.809	0.603	3e-24
118489268	121	unknown [Populus trichocarpa x Populus d	0.933	0.809	0.603	3e-24
118489179	122	unknown [Populus trichocarpa x Populus d	0.952	0.819	0.557	3e-24

>gi|343887314|dbj|BAK61860.1| hypothetical protein [Citrus unshiu]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 104/123 (84%), Gaps = 18/123 (14%)

Query: 1   MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK- 59
           MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK 
Sbjct: 1   MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKA 60

Query: 60  -----------------VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPV 102
                            VAEAAG GLSPSLKNFLLSIVAGGVVLAA+VGAVIGVANFDPV
Sbjct: 61  VTGLTAAALTASMVIPEVAEAAGPGLSPSLKNFLLSIVAGGVVLAALVGAVIGVANFDPV 120

Query: 103 KRT 105
           KRT
Sbjct: 121 KRT 123

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092099|ref|XP_002309472.1| predicted protein [Populus trichocarpa] gi|222855448|gb|EEE92995.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 91/124 (73%), Gaps = 19/124 (15%)

Query: 1   MASVSMAMPLSSATQNRLIQP-SSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK 59
           MASVSMAMPL+SA+Q RL QP +S+SFLKPLP+RPS       K KSRARL+VQASLKEK
Sbjct: 1   MASVSMAMPLASASQKRLEQPPNSQSFLKPLPIRPSMEVGLSTKSKSRARLEVQASLKEK 60

Query: 60  ------------------VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDP 101
                             VAEAAG G+SPSLKNFLLSI AGGVV  AI+GAV+GV+NFDP
Sbjct: 61  AVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGVVAVAIIGAVLGVSNFDP 120

Query: 102 VKRT 105
           VKR+
Sbjct: 121 VKRS 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081701|emb|CBI20706.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 93/124 (75%), Gaps = 20/124 (16%)

Query: 1   MASVSMAMPLSSATQNRLIQ-PSSESFLKPLPVRPSKAARFLGKPKSR-ARLQVQASLKE 58
           MASVSMAM L+SA+QNRL+Q P+SE+F +PL V+PSK A  + KPKSR +RL+V+ASLKE
Sbjct: 1   MASVSMAMRLTSASQNRLLQRPTSEAFFQPLQVKPSKKAVAV-KPKSRGSRLEVKASLKE 59

Query: 59  KV-----------------AEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDP 101
           K                  A  A SG+SPSLKNFLLSIVAGGVVL AIVGAVIGVANFDP
Sbjct: 60  KAITGLTAAALTASMVLPEAAEAASGVSPSLKNFLLSIVAGGVVLGAIVGAVIGVANFDP 119

Query: 102 VKRT 105
           VKRT
Sbjct: 120 VKRT 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546007|ref|XP_002514063.1| conserved hypothetical protein [Ricinus communis] gi|223546519|gb|EEF48017.1| conserved hypothetical protein [Ricinus communis]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 88/122 (72%), Gaps = 23/122 (18%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK-- 59
           ++VSMAMP++SA+Q ++  PSSE+F KPLP+R SKA       KS  + QV+ASLKEK  
Sbjct: 5   SAVSMAMPITSASQKKV--PSSEAFFKPLPLRQSKAVM---ASKSNGKFQVKASLKEKAI 59

Query: 60  ----------------VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                           VAEAAGSG+SPSLKNFLLSIVAGGVVL AIVGA+IGVANFDPVK
Sbjct: 60  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 119

Query: 104 RT 105
           R+
Sbjct: 120 RS 121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122446|ref|XP_002330483.1| predicted protein [Populus trichocarpa] gi|222872417|gb|EEF09548.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 83/122 (68%), Gaps = 22/122 (18%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKV- 60
           ++VSMAMPL+ A+  R   P+SE+F KPLPVRPSKA       +   R QV+ASLKEKV 
Sbjct: 5   SAVSMAMPLTHAS--RKAAPTSEAFFKPLPVRPSKA--IAAASRCNGRFQVKASLKEKVV 60

Query: 61  -----------------AEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                            AEAAG G+SPSL NFLLSIVAGGVVLAAI GAV+GV+NFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVR 120

Query: 104 RT 105
           R+
Sbjct: 121 RS 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522391|gb|AFK49257.1| unknown [Lotus japonicus]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 79/121 (65%), Gaps = 20/121 (16%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK-- 59
           ASV MA+ LSS T N+L  PSS+SF +PLP+R +K      KP S+++  + ASLKEK  
Sbjct: 4   ASVPMALSLSSVTHNKLNNPSSQSFFQPLPIRQNKT--LFAKPSSKSKHGIHASLKEKAV 61

Query: 60  ----------------VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                           VA AAG+ L+PSLKNFLLSI AGGVVL AI  AVIGV+NFDPVK
Sbjct: 62  AGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFDPVK 121

Query: 104 R 104
           R
Sbjct: 122 R 122

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489056|gb|ABK96335.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 82/122 (67%), Gaps = 22/122 (18%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKV- 60
           ++VSMAMPL+ A+  R   P+SE+F KPLPVRPSKA       +     QV+ASLKEKV 
Sbjct: 5   SAVSMAMPLTHAS--RKAAPTSEAFFKPLPVRPSKA--IAAASRCNGGFQVKASLKEKVV 60

Query: 61  -----------------AEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                            AEAAG G+SPSL NFLLSIVAGGVVLAAI GAV+GV+NFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVR 120

Query: 104 RT 105
           R+
Sbjct: 121 RS 122

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068412|ref|XP_002326114.1| predicted protein [Populus trichocarpa] gi|222833307|gb|EEE71784.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 85/121 (70%), Gaps = 23/121 (19%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK-- 59
           ++VSMA+PL+ A+Q R+  P+SE+F KPLP RPSKA       KS  R QV+ASLKEK  
Sbjct: 5   SAVSMALPLTYASQKRI--PASEAFFKPLPARPSKAMS---ASKSSGRFQVKASLKEKLV 59

Query: 60  ----------------VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                           VAEAAG+G SPSLKNFLLSIVAGGVVL AI+GAVIGV+NFDPVK
Sbjct: 60  TGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVK 119

Query: 104 R 104
           R
Sbjct: 120 R 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489268|gb|ABK96439.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 85/121 (70%), Gaps = 23/121 (19%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEK-- 59
           ++VSMA+PL+ A+Q R+  P+SE+F KPLP RPSKA       KS  R QV+ASLKEK  
Sbjct: 5   SAVSMALPLTYASQKRV--PASEAFFKPLPARPSKAMS---ASKSSGRFQVKASLKEKLV 59

Query: 60  ----------------VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                           VAEAAG+G SPSLKNFLLSIVAGGVVL AI+GAVIGV+NFDPVK
Sbjct: 60  TGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVK 119

Query: 104 R 104
           R
Sbjct: 120 R 120

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489179|gb|ABK96396.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 81/122 (66%), Gaps = 22/122 (18%)

Query: 2   ASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKV- 60
           ++VSMAMPL+ A+  R   P+SE+F KPLP RPSKA       +   R QV+ASLKEKV 
Sbjct: 5   SAVSMAMPLTHAS--RKAAPTSEAFFKPLPARPSKA--IAAASRCNDRFQVKASLKEKVV 60

Query: 61  -----------------AEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVK 103
                            AEAAG G+SPSL NFLLSIVAGGVVL AI GAV+GV+NFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDPVR 120

Query: 104 RT 105
           R+
Sbjct: 121 RS 122

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2054582	116	PSBX "AT2G06520" [Arabidopsis	0.952	0.862	0.404	4.1e-10

TAIR|locus:2054582 PSBX "AT2G06520" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 49/121 (40%), Positives = 60/121 (49%)

Query:     1 MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQ--------- 51
             MAS S AM L +     L Q  S  FLKPLP++PSKA    G    R +++         
Sbjct:     1 MASTS-AMSLVTP----LNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALT 55

Query:    52 ------VQASLK-EKVAEAAGSGLSPSLKNFLLSXXXXXXXXXXXXXXXXXXXNFDPVKR 104
                   + AS+   ++AEAAGSG+SPSLKNFLLS                   NFDPVKR
Sbjct:    56 GISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKR 115

Query:   105 T 105
             T
Sbjct:   116 T 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.124   0.330    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105        86   0.00091  102 3  10 23  0.46    29
                                                     29  0.47    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  466 (50 KB)
  Total size of DFA:  91 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.94u 0.21s 15.15t   Elapsed:  00:00:00
  Total cpu time:  14.94u 0.21s 15.15t   Elapsed:  00:00:00
  Start:  Fri May 10 12:23:34 2013   End:  Fri May 10 12:23:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VI0645 hypothetical protein (124 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
PLN00088	127	PLN00088, PLN00088, predicted protein; Provisional	2e-09
pfam06596	39	pfam06596, PsbX, Photosystem II reaction centre X	3e-07

>gnl|CDD|177709 PLN00088, PLN00088, predicted protein; Provisional

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 52  VQASLKEKVAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 104
           + A++  ++AEAA  G+SPSLKN LLS+VAGGVV+  I  AV GV+ FDPVKR
Sbjct: 74  LAAAVVPEIAEAAQPGVSPSLKNLLLSVVAGGVVITVIGVAVAGVSTFDPVKR 126

Length = 127

>gnl|CDD|148292 pfam06596, PsbX, Photosystem II reaction centre X protein (PsbX)

 Score = 43.1 bits (102), Expect = 3e-07
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 68  LSPSLKNFLLSIVAGG-VVLAAIVGAVIGVANFDPVKRT 105
           ++PSL NFL S+VAG  +V+  I  A+I V+  D V+R+
Sbjct: 1   MTPSLANFLWSLVAGAVIVVIPITAALIFVSQTDKVQRS 39

This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PLN00088	127	predicted protein; Provisional	99.97
CHL00114	39	psbX photosystem II protein X; Reviewed	99.83
PF06596	39	PsbX: Photosystem II reaction centre X protein (Ps	99.83

>PLN00088 predicted protein; Provisional

Probab=99.97  E-value=2e-31  Score=196.02  Aligned_cols=101  Identities=41%  Similarity=0.542  Sum_probs=86.9

Q ss_pred             Ccccccc----ccchh-hhhhccc-CCCcccccccCC-CCCcchhhhccCCCcccceEEecc-hhHH-------------
Q 034031            1 MASVSMA----MPLSS-ATQNRLI-QPSSESFLKPLP-VRPSKAARFLGKPKSRARLQVQAS-LKEK-------------   59 (105)
Q Consensus         1 MAS~Sma----~pl~~-at~~~~~-~pss~~ff~Plp-~r~s~~~~~~~~~~~~~r~~v~AS-~keK-------------   59 (105)
                      |||++|+    .++++ ++|.|+. .++.|+|-.--| .|++.....    .+|+|+|++++ +|||             
T Consensus         1 ma~~~~~s~~~a~~~~~~t~~~~~k~~~~~g~~l~~p~~~~~~~~~~----~n~~r~~~~as~~~ekav~gltaaAl~As   76 (127)
T PLN00088          1 MACAAMASVSSAATAPLATLVWEAKLLSRQGLALAAPSGKKQVSVAI----SNRSRVVMSLPAKEDHNVASLTSLALLAA   76 (127)
T ss_pred             CchHHHHHhhccccchhhHhhhhhhhhccccceecCCCCccchhhhh----cccceeEEecchHHHHHHHHHHHHHHHHH
Confidence            7888753    57777 8899888 899999876556 455555532    45789999999 8999             


Q ss_pred             -----HHHHhCCCCChhHHHHHHHHHhhhHHHHhhhheeeeeeccccccCC
Q 034031           60 -----VAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT  105 (105)
Q Consensus        60 -----vaeaa~~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~  105 (105)
                           |||||++||||||+||||||+|||+|+++|++|||||||||||+|+
T Consensus        77 mv~pevAeAA~~gvTPSLsNFL~SLvaGgvVv~pI~~Ali~VSq~D~V~R~  127 (127)
T PLN00088         77 AVVPEIAEAAQPGVSPSLKNLLLSVVAGGVVITVIGVAVAGVSTFDPVKRK  127 (127)
T ss_pred             hhCHHHHHhccCCCChhHHHHHHHHHhhhhhhhhhheeeEEEeccCccccC
Confidence                 9999999999999999999999999999999999999999999996

>CHL00114 psbX photosystem II protein X; Reviewed

Probab=99.83  E-value=2.8e-21  Score=118.74  Aligned_cols=38  Identities=29%  Similarity=0.511  Sum_probs=36.5

Q ss_pred             CChhHHHHHHHHHhhhHHHH-hhhheeeeeeccccccCC
Q 034031           68 LSPSLKNFLLSIVAGGVVLA-AIVGAVIGVANFDPVKRT  105 (105)
Q Consensus        68 mTPSL~NFl~SLvaG~vVv~-~i~~Ali~VSq~D~V~R~  105 (105)
                      |||||+|||+||+||++|++ ||++||+||||+|+++|+
T Consensus         1 MTpSLsnF~~SL~~Ga~ivvipi~~aLifvSq~D~v~R~   39 (39)
T CHL00114          1 MTPSLSAFINSLLLGAIIVVIPITLALLFVSQKDRTTRN   39 (39)
T ss_pred             CChhHHHHHHHHHHHHHHhHHHhhhheEEEeccceeccC
Confidence            99999999999999999875 999999999999999996

>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.83  E-value=1e-21  Score=120.45  Aligned_cols=38  Identities=58%  Similarity=0.922  Sum_probs=29.9

Q ss_pred             CChhHHHHHHHHHhhh-HHHHhhhheeeeeeccccccCC
Q 034031           68 LSPSLKNFLLSIVAGG-VVLAAIVGAVIGVANFDPVKRT  105 (105)
Q Consensus        68 mTPSL~NFl~SLvaG~-vVv~~i~~Ali~VSq~D~V~R~  105 (105)
                      |||||+|||+||+||| +|++||++||++|||+|+++|+
T Consensus         1 mTpSL~nfl~Sl~aG~~iVv~~i~~ali~VSq~D~v~R~   39 (39)
T PF06596_consen    1 MTPSLSNFLLSLVAGAVIVVIPIAGALIFVSQFDRVKRS   39 (39)
T ss_dssp             --HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCS-----
T ss_pred             CCHhHHHHHHHHHhhhhhhhhhhhhheEEEeccCccccC
Confidence            8999999999999999 6777999999999999999996

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3arc_X	39	Photosystem II PSBX protein; PSII, membrane-protei	99.85
3bz1_X	50	Photosystem II PSBX protein; electron transport ph	99.82

>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*

Probab=99.85  E-value=1.5e-22  Score=123.39  Aligned_cols=39  Identities=33%  Similarity=0.711  Sum_probs=37.7

Q ss_pred             CCChhHHHHHHHHHhhhHHHHhhhheeeeeeccccccCC
Q 034031           67 GLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT  105 (105)
Q Consensus        67 ~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~  105 (105)
                      +|||||+|||+||+|||+|++.|++||++|||+||++|+
T Consensus         1 ~mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D~v~R~   39 (39)
T 3arc_X            1 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS   39 (39)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             CcChhHHHHHHHHHHHHHHHHHHHHHheeEeccCccccC
Confidence            599999999999999999999999999999999999996

>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*

Probab=99.82  E-value=1.5e-21  Score=124.32  Aligned_cols=40  Identities=33%  Similarity=0.676  Sum_probs=36.4

Q ss_pred             CCCChhHHHHHHHHHhhhHHHHhhhheeeeeeccccccCC
Q 034031           66 SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT  105 (105)
Q Consensus        66 ~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~  105 (105)
                      .+|||||+|||+||+|||+|++.|++||++|||+|+|+|+
T Consensus        10 ~~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D~v~R~   49 (50)
T 3bz1_X           10 LTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS   49 (50)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccCccccC
Confidence            4799999999999999999999999999999999999995

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00