Citrus Sinensis ID: 034056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MAMVASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG
Secondary Structure (PSIPRED)
cccccccccccccHHccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcEEcccccccccccEEEccccHcHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mamvasdnapllaevdmgtdssasTVRATVVQAstifndtpatLDKAERLLAEAsgygsqvvvfpeafiggyprgtnfgvSIANRTAKGKEDFRKYHASAIDVPG
Flexible Loop (DISEMBL)
mamvasdnapllaEVDMGTDSSASTVRATVVQAstifndtpatLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRtakgkedfrkyhasaidvpg
Low Complexity Region (SEG)
MAMVASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG
Disordered region (IsUnstruct)
***************************ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANR********************
Disordered Region (DISOPRED)
*************************VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG
Disordered Region (DISEMBL)
MAMVASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG
Disordered Region (DISPRO)
***********LAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q42966	348	Bifunctional nitrilase/ni	N/A	no	1.0	0.301	0.777	1e-42
Q42965	349	Bifunctional nitrilase/ni	N/A	no	1.0	0.300	0.787	5e-42
Q6H849	362	Bifunctional nitrilase/ni	yes	no	1.0	0.290	0.684	8e-37
P46011	355	Bifunctional nitrilase/ni	yes	no	0.904	0.267	0.726	3e-35
P32962	339	Nitrilase 2 OS=Arabidopsi	no	no	0.923	0.286	0.543	8e-27
P46010	346	Nitrilase 3 OS=Arabidopsi	no	no	0.838	0.254	0.595	9e-27
P32961	346	Nitrilase 1 OS=Arabidopsi	no	no	0.790	0.239	0.578	7e-26
P40447	199	Putative nitrilase-like p	yes	no	0.695	0.366	0.397	1e-09
P82605	339	Nitrilase OS=Bacillus sp.	N/A	no	0.504	0.156	0.490	2e-07
Q03217	366	Aliphatic nitrilase OS=Rh	N/A	no	0.476	0.136	0.42	4e-05

>sp|Q42966|NRL4B_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 3/108 (2%)

Query: 1   MAMVAS---DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
           MA+V +   +  P+ AEVDMG +SS  TVRATVVQASTIF DTPATLDKAERLLAEA+ Y
Sbjct: 1   MALVPTPVVNEGPMFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLDKAERLLAEAASY 60

Query: 58  GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           G+Q+VVFPEAFIGGYPRG+ FGVSI NRTAKGKE+FRKYHASAIDVPG
Sbjct: 61  GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPG 108

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.
Nicotiana tabacum (taxid: 4097)
EC: 3EC: .EC: 5EC: .EC: 5EC: .EC: 4

>sp|Q42965|NRL4A_TOBAC Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 93/108 (86%), Gaps = 3/108 (2%)

Query: 1   MAMV---ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
           MA+V   A +  PL AEVDMG +SS  TVRATVVQASTIF DTPATL KAERLLAEA+ Y
Sbjct: 1   MALVPTPAVNEGPLFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLVKAERLLAEAASY 60

Query: 58  GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           G+Q+VVFPEAFIGGYPRG+ FGVSI NRTAKGKE+FRKYHASAIDVPG
Sbjct: 61  GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPG 108

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.

Nicotiana tabacum (taxid: 4097)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 4

>sp|Q6H849|NRL4_ORYSJ Bifunctional nitrilase/nitrile hydratase NIT4 OS=Oryza sativa subsp. japonica GN=NIT4 PE=2 SV=1

 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 93/114 (81%), Gaps = 9/114 (7%)

Query: 1   MAMVASDNA---PLLAEVDM--GTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEAS 55
           MAMV S +    P++AEV+M  G DS A+TVRATVVQAST+F DTPATLDKAERL+ EA+
Sbjct: 1   MAMVPSGSGGGPPVIAEVEMNGGADSGAATVRATVVQASTVFYDTPATLDKAERLIEEAA 60

Query: 56  GYGSQVVVFPEAFIGGYPRGTNFG----VSIANRTAKGKEDFRKYHASAIDVPG 105
           GYGSQ+VVFPEAF+GGYPRG+ FG    +SI N   KGKE+FRKYHA+AI+VPG
Sbjct: 61  GYGSQLVVFPEAFVGGYPRGSTFGFGANISIGNPKDKGKEEFRKYHAAAIEVPG 114

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 4

>sp|P46011|NRL4_ARATH Bifunctional nitrilase/nitrile hydratase NIT4 OS=Arabidopsis thaliana GN=NIT4 PE=1 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 82/95 (86%)

Query: 11  LLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG 70
           +  E+DM    S+S VRATVVQAST+F DTPATLDKAERLL+EA+  GSQ+VVFPEAFIG
Sbjct: 21  IFPEIDMSAGDSSSIVRATVVQASTVFYDTPATLDKAERLLSEAAENGSQLVVFPEAFIG 80

Query: 71  GYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           GYPRG+ F ++I +RTAKG++DFRKYHASAIDVPG
Sbjct: 81  GYPRGSTFELAIGSRTAKGRDDFRKYHASAIDVPG 115

Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN) or allylcyanide and no acitvity with indole-3-acetonitrile. Not associated with auxin production but may be involved in cyanide detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 4

>sp|P32962|NRL2_ARATH Nitrilase 2 OS=Arabidopsis thaliana GN=NIT2 PE=1 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%), Gaps = 6/103 (5%)

Query: 3   MVASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVV 62
           M  S+N P          +S++ VRAT+VQAST++NDTPATL+KA + + EA+  GS++V
Sbjct: 1   MSTSENTPF------NGVASSTIVRATIVQASTVYNDTPATLEKANKFIVEAASKGSELV 54

Query: 63  VFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           VFPEAFIGGYPRG  FG+ +     +G+++FRKYHASAI VPG
Sbjct: 55  VFPEAFIGGYPRGFRFGLGVGVHNEEGRDEFRKYHASAIKVPG 97

Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P46010|NRL3_ARATH Nitrilase 3 OS=Arabidopsis thaliana GN=NIT3 PE=1 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 72/89 (80%), Gaps = 1/89 (1%)

Query: 17  MGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76
           +G D S STVR T+VQ+ST++NDTPATLDKAE+ + EA+  G+++V+FPEAFIGGYPRG 
Sbjct: 17  IGVDPS-STVRVTIVQSSTVYNDTPATLDKAEKFIVEAASKGAKLVLFPEAFIGGYPRGF 75

Query: 77  NFGVSIANRTAKGKEDFRKYHASAIDVPG 105
            FG+++     +G+++FR YHASAI VPG
Sbjct: 76  RFGLAVGVHNEEGRDEFRNYHASAIKVPG 104

Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1 PE=1 SV=2

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 69/83 (83%)

Query: 23  ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSI 82
           ++TVR T+VQ+ST++NDTPAT+DKAE+ + EA+  G+++V+FPE FIGGYPRG  FG+++
Sbjct: 22  STTVRVTIVQSSTVYNDTPATIDKAEKYIVEAASKGAELVLFPEGFIGGYPRGFRFGLAV 81

Query: 83  ANRTAKGKEDFRKYHASAIDVPG 105
                +G+++FRKYHASAI VPG
Sbjct: 82  GVHNEEGRDEFRKYHASAIHVPG 104

Can convert indole-3-acetonitrile to the plant hormone indole-3-acetic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P40447|NIT1_YEAST Putative nitrilase-like protein NIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIT1 PE=5 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 44/73 (60%)

Query: 31  VQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGK 90
           +Q  +    T  TL K      E    G+++VV PEA +GGYP+G+NFGV +  R  +G+
Sbjct: 9   LQIGSCPGSTKDTLKKILSYEKEIKESGAKLVVIPEATLGGYPKGSNFGVYLGYRLQEGR 68

Query: 91  EDFRKYHASAIDV 103
           E++ KY A AI++
Sbjct: 69  EEYAKYLAEAIEI 81

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P82605|NRL_BACSX Nitrilase OS=Bacillus sp. (strain OxB-1) GN=nit PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
          S+    R   VQAS +  D  AT+DK  RL+ EA+  G++V+ FPEAFI GYP
Sbjct: 2  SNYPKYRVAAVQASPVLLDLDATIDKTCRLVDEAAANGAKVIAFPEAFIPGYP 54

Bacillus sp. (strain OxB-1) (taxid: 98228)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q03217|NRL2_RHORH Aliphatic nitrilase OS=Rhodococcus rhodochrous GN=nitA PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
          +T +   VQA  ++ D   T+DK   ++AEA+  G ++V FPE FI GYP
Sbjct: 6  NTFKVAAVQAQPVWFDAAKTVDKTVSIIAEAARNGCELVAFPEVFIPGYP 55

Rhodococcus rhodochrous (taxid: 1829)

EC: 3

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
225464870	347	PREDICTED: bifunctional nitrilase/nitril	1.0	0.302	0.803	5e-43
388506412	346	unknown [Lotus japonicus]	1.0	0.303	0.781	1e-42
449443470	350	PREDICTED: bifunctional nitrilase/nitril	1.0	0.3	0.787	2e-41
47606796	349	nitrilase 4A [Lupinus angustifolius] gi|	1.0	0.300	0.768	4e-41
75221395	348	RecName: Full=Bifunctional nitrilase/nit	1.0	0.301	0.777	5e-41
224132310	348	nitrilase 1 [Populus trichocarpa] gi|222	1.0	0.301	0.766	7e-41
3914163	349	RecName: Full=Bifunctional nitrilase/nit	1.0	0.300	0.787	2e-40
388500646	179	unknown [Medicago truncatula]	1.0	0.586	0.752	4e-40
356539229	350	PREDICTED: bifunctional nitrilase/nitril	1.0	0.3	0.743	6e-40
359806988	350	uncharacterized protein LOC100810230 [Gl	1.0	0.3	0.733	1e-39

>gi|225464870|ref|XP_002272837.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Vitis vinifera]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 97/107 (90%), Gaps = 2/107 (1%)

Query: 1   MAMVAS--DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYG 58
           MA++ +  ++ PL AEVDMG DSSA TVRATVVQAST+F DTPATLDKAERLLAEAS YG
Sbjct: 1   MALIPATVNDRPLFAEVDMGADSSAPTVRATVVQASTVFYDTPATLDKAERLLAEASSYG 60

Query: 59  SQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           SQ+VVFPEAFIGGYPRG+NFGV+I NRTAKG+EDFRKYHA+AIDVPG
Sbjct: 61  SQLVVFPEAFIGGYPRGSNFGVTIGNRTAKGREDFRKYHAAAIDVPG 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506412|gb|AFK41272.1| unknown [Lotus japonicus]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 5/110 (4%)

Query: 1   MAMVAS-----DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEAS 55
           MA+V +     +N PL+AEVDMG+DS+A TVRATVVQASTIF DTPATLDKAERLLAEA+
Sbjct: 1   MALVPTTTPTINNGPLIAEVDMGSDSNAPTVRATVVQASTIFYDTPATLDKAERLLAEAA 60

Query: 56  GYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           GYGSQ+VVFPEAFIGGYPRG+NFG+ I  RTAKG+EDFRKYH+SAIDVPG
Sbjct: 61  GYGSQLVVFPEAFIGGYPRGSNFGIIIGIRTAKGREDFRKYHSSAIDVPG 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443470|ref|XP_004139500.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like [Cucumis sativus]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 96/108 (88%), Gaps = 3/108 (2%)

Query: 1   MAMV---ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
           MA+V   A  ++ L+AEVDMG+DSS   VRATVVQASTIF DTPATLDKAERLLAEA+G+
Sbjct: 1   MALVPTTAPTDSQLIAEVDMGSDSSVMNVRATVVQASTIFYDTPATLDKAERLLAEAAGF 60

Query: 58  GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           GSQ+VVFPEAF+GGYPRG+NFGVSI NRT KGKE+FRKYHASAIDVPG
Sbjct: 61  GSQLVVFPEAFVGGYPRGSNFGVSIGNRTPKGKEEFRKYHASAIDVPG 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47606796|gb|AAT36331.1| nitrilase 4A [Lupinus angustifolius] gi|79082433|gb|ABB51979.1| nitrilase 4A [Lupinus angustifolius]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 96/108 (88%), Gaps = 3/108 (2%)

Query: 1   MAMVAS---DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
           MA+V +   ++ PL AEV+M +D +A TVRATVVQASTIF DTPATLDKAERLLAEA+ Y
Sbjct: 1   MALVTTPTVNDGPLFAEVNMSSDFNAPTVRATVVQASTIFYDTPATLDKAERLLAEAASY 60

Query: 58  GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           G+Q+VVFPEAFIGGYPRG+NFGVSI NRTAKGKEDFRKYH++AIDVPG
Sbjct: 61  GAQIVVFPEAFIGGYPRGSNFGVSIGNRTAKGKEDFRKYHSAAIDVPG 108

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75221395|sp|Q42966.1|NRL4B_TOBAC RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4B; Short=TNIT4B; AltName: Full=Cyanoalanine nitrilase B; AltName: Full=Nitrilase 4B gi|1181615|dbj|BAA11770.1| nitrilase [Nicotiana tabacum]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 3/108 (2%)

Query: 1   MAMVAS---DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
           MA+V +   +  P+ AEVDMG +SS  TVRATVVQASTIF DTPATLDKAERLLAEA+ Y
Sbjct: 1   MALVPTPVVNEGPMFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLDKAERLLAEAASY 60

Query: 58  GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           G+Q+VVFPEAFIGGYPRG+ FGVSI NRTAKGKE+FRKYHASAIDVPG
Sbjct: 61  GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPG 108

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132310|ref|XP_002328237.1| nitrilase 1 [Populus trichocarpa] gi|222837752|gb|EEE76117.1| nitrilase 1 [Populus trichocarpa]

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 95/107 (88%), Gaps = 2/107 (1%)

Query: 1   MAMVAS--DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYG 58
           MA+V +     PL AEVDM +DSSA+TVRATV+QAST+F DTPATLDKAER LAEA+GYG
Sbjct: 1   MALVPAPPSETPLFAEVDMCSDSSATTVRATVIQASTVFYDTPATLDKAERFLAEAAGYG 60

Query: 59  SQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           SQ+VVFPEAFIGGYPRG++FG +I +RTAKG+EDFRKYHASAIDVPG
Sbjct: 61  SQLVVFPEAFIGGYPRGSSFGATIGSRTAKGREDFRKYHASAIDVPG 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3914163|sp|Q42965.1|NRL4A_TOBAC RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4A; Short=TNIT4A; AltName: Full=Cyanoalanine nitrilase A; AltName: Full=Nitrilase 4A gi|1171482|dbj|BAA09645.1| nitrilase [Nicotiana tabacum]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 93/108 (86%), Gaps = 3/108 (2%)

Query: 1   MAMV---ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY 57
           MA+V   A +  PL AEVDMG +SS  TVRATVVQASTIF DTPATL KAERLLAEA+ Y
Sbjct: 1   MALVPTPAVNEGPLFAEVDMGDNSSTPTVRATVVQASTIFYDTPATLVKAERLLAEAASY 60

Query: 58  GSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           G+Q+VVFPEAFIGGYPRG+ FGVSI NRTAKGKE+FRKYHASAIDVPG
Sbjct: 61  GAQLVVFPEAFIGGYPRGSTFGVSIGNRTAKGKEEFRKYHASAIDVPG 108

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500646|gb|AFK38389.1| unknown [Medicago truncatula]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 96/109 (88%), Gaps = 4/109 (3%)

Query: 1   MAMVAS----DNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASG 56
           MA+V +    ++ PL++EVDMG+D +A TVRATVVQASTIF DTPATLDKAERLLAEA+ 
Sbjct: 1   MALVTTTPTINDGPLISEVDMGSDFNALTVRATVVQASTIFYDTPATLDKAERLLAEAAS 60

Query: 57  YGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           YGSQ+VVFPEAFIGGYPRG+ FGVSI NRTAKG+EDFRKY ++AIDVPG
Sbjct: 61  YGSQLVVFPEAFIGGYPRGSGFGVSIGNRTAKGREDFRKYRSAAIDVPG 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539229|ref|XP_003538102.1| PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4A-like [Glycine max]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 95/109 (87%), Gaps = 4/109 (3%)

Query: 1   MAMVASD----NAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASG 56
           MA+V ++      PL AEVDMG+D +A TVRATVVQASTIF DTPATLDKAERLLAEA+ 
Sbjct: 1   MALVTTNPTINEGPLFAEVDMGSDFNAPTVRATVVQASTIFYDTPATLDKAERLLAEAAS 60

Query: 57  YGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           YGSQ+VVFPEAF+GGYPRG+ FG+SI NRTAKG+E+FRKYH++AIDVPG
Sbjct: 61  YGSQLVVFPEAFVGGYPRGSAFGLSIGNRTAKGREEFRKYHSAAIDVPG 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806988|ref|NP_001241587.1| uncharacterized protein LOC100810230 [Glycine max] gi|255636059|gb|ACU18374.1| unknown [Glycine max]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 94/109 (86%), Gaps = 4/109 (3%)

Query: 1   MAMVASD----NAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASG 56
           MA+V ++      PL AEVDMG+D +A TVRATVVQASTIF DTPATLDKAERLLAEA+ 
Sbjct: 1   MALVTTNPTINEGPLFAEVDMGSDFNAPTVRATVVQASTIFYDTPATLDKAERLLAEATS 60

Query: 57  YGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           YGSQ+VVFPEAF+GGYPRG+ FG+SI NRT KG+E+FRKYH++AIDVPG
Sbjct: 61  YGSQLVVFPEAFVGGYPRGSAFGLSIGNRTVKGREEFRKYHSAAIDVPG 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2176377	355	NIT4 "nitrilase 4" [Arabidopsi	0.904	0.267	0.726	6.7e-33
TAIR|locus:2095700	346	NIT3 "nitrilase 3" [Arabidopsi	0.838	0.254	0.595	8.4e-26
TAIR|locus:2095735	339	NIT2 "nitrilase 2" [Arabidopsi	0.809	0.250	0.611	1.1e-25
TAIR|locus:2095690	346	NIT1 "nitrilase 1" [Arabidopsi	0.790	0.239	0.578	9.7e-25
WB|WBGene00014206	305	nit-1 [Caenorhabditis elegans	0.752	0.259	0.443	2.9e-16
UNIPROTKB|G4N9H1	344	MGG_03280 "Nitrilase 2" [Magna	0.819	0.25	0.379	2.4e-11
SGD|S000001426	199	NIT1 "Nitrilase" [Saccharomyce	0.704	0.371	0.389	5.2e-10
UNIPROTKB|Q4KCL8	306	PFL_2909 "Nitrilase family pro	0.609	0.209	0.453	6.2e-10
TIGR_CMR|SPO_A0114	344	SPO_A0114 "nitrilase family pr	0.438	0.133	0.565	1.7e-07
ASPGD|ASPL0000068634	347	AN7367 [Emericella nidulans (t	0.742	0.224	0.345	2.9e-07

TAIR|locus:2176377 NIT4 "nitrilase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 69/95 (72%), Positives = 82/95 (86%)

Query:    11 LLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG 70
             +  E+DM    S+S VRATVVQAST+F DTPATLDKAERLL+EA+  GSQ+VVFPEAFIG
Sbjct:    21 IFPEIDMSAGDSSSIVRATVVQASTVFYDTPATLDKAERLLSEAAENGSQLVVFPEAFIG 80

Query:    71 GYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
             GYPRG+ F ++I +RTAKG++DFRKYHASAIDVPG
Sbjct:    81 GYPRGSTFELAIGSRTAKGRDDFRKYHASAIDVPG 115

GO:0005886 "plasma membrane" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0018822 "nitrile hydratase activity" evidence=IDA

GO:0019499 "cyanide metabolic process" evidence=IEP

GO:0047427 "cyanoalanine nitrilase activity" evidence=IDA

GO:0047558 "3-cyanoalanine hydratase activity" evidence=IDA

GO:0051410 "detoxification of nitrogen compound" evidence=IEP

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

TAIR|locus:2095700 NIT3 "nitrilase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 53/89 (59%), Positives = 72/89 (80%)

Query:    17 MGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76
             +G D S STVR T+VQ+ST++NDTPATLDKAE+ + EA+  G+++V+FPEAFIGGYPRG 
Sbjct:    17 IGVDPS-STVRVTIVQSSTVYNDTPATLDKAEKFIVEAASKGAKLVLFPEAFIGGYPRGF 75

Query:    77 NFGVSIANRTAKGKEDFRKYHASAIDVPG 105
              FG+++     +G+++FR YHASAI VPG
Sbjct:    76 RFGLAVGVHNEEGRDEFRNYHASAIKVPG 104

GO:0005886 "plasma membrane" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0019762 "glucosinolate catabolic process" evidence=TAS

GO:0009970 "cellular response to sulfate starvation" evidence=IEP

GO:0080109 "indole-3-acetonitrile nitrile hydratase activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

TAIR|locus:2095735 NIT2 "nitrilase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 52/85 (61%), Positives = 70/85 (82%)

Query:    21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGV 80
             +S++ VRAT+VQAST++NDTPATL+KA + + EA+  GS++VVFPEAFIGGYPRG  FG+
Sbjct:    13 ASSTIVRATIVQASTVYNDTPATLEKANKFIVEAASKGSELVVFPEAFIGGYPRGFRFGL 72

Query:    81 SIANRTAKGKEDFRKYHASAIDVPG 105
              +     +G+++FRKYHASAI VPG
Sbjct:    73 GVGVHNEEGRDEFRKYHASAIKVPG 97

GO:0005886 "plasma membrane" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEP

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0080109 "indole-3-acetonitrile nitrile hydratase activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS

TAIR|locus:2095690 NIT1 "nitrilase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/83 (57%), Positives = 69/83 (83%)

Query:    23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSI 82
             ++TVR T+VQ+ST++NDTPAT+DKAE+ + EA+  G+++V+FPE FIGGYPRG  FG+++
Sbjct:    22 STTVRVTIVQSSTVYNDTPATIDKAEKYIVEAASKGAELVLFPEGFIGGYPRGFRFGLAV 81

Query:    83 ANRTAKGKEDFRKYHASAIDVPG 105
                  +G+++FRKYHASAI VPG
Sbjct:    82 GVHNEEGRDEFRKYHASAIHVPG 104

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0000257 "nitrilase activity" evidence=IDA

GO:0080109 "indole-3-acetonitrile nitrile hydratase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0080061 "indole-3-acetonitrile nitrilase activity" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=TAS

WB|WBGene00014206 nit-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/79 (44%), Positives = 59/79 (74%)

Query:    27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRT 86
             +  +VQA T   D PATL+K ++ + EA+G G+++V+FPEAFIGGYP+  +FG+++  RT
Sbjct:     3 KIAIVQAGTPLFDKPATLEKVKKNVEEAAGNGAELVLFPEAFIGGYPKWNSFGITMGTRT 62

Query:    87 AKGKEDFRKYHASAIDVPG 105
              +G+++F++Y  +AI+  G
Sbjct:    63 PEGRKEFKRYFENAIEENG 81

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|G4N9H1 MGG_03280 "Nitrilase 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 161 (61.7 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query:    17 MGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT 76
             M T S   T+R      S     T  TL   +++ A A+     +++ PEAF+GGYPRGT
Sbjct:     1 MSTRSEIKTLRLGTASPSPAAT-TAETLSVVDQVAARAADQNIDLLLLPEAFLGGYPRGT 59

Query:    77 NFGVSIANRTAKGKEDFRKYHASAIDV 103
             +FG  I +R+ +G+E+FR+Y   A+D+
Sbjct:    60 SFGSVIGSRSDEGREEFRQYFRGAVDL 86

GO:0005575 "cellular_component" evidence=ND

SGD|S000001426 NIT1 "Nitrilase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query:    30 VVQASTIFNDTPATLDKAERLLA---EASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRT 86
             +V A  I +   +T D  +++L+   E    G+++VV PEA +GGYP+G+NFGV +  R 
Sbjct:     5 IVAALQIGSCPGSTKDTLKKILSYEKEIKESGAKLVVIPEATLGGYPKGSNFGVYLGYRL 64

Query:    87 AKGKEDFRKYHASAIDV 103
              +G+E++ KY A AI++
Sbjct:    65 QEGREEYAKYLAEAIEI 81

GO:0005575 "cellular_component" evidence=ND

GO:0000257 "nitrilase activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|Q4KCL8 PFL_2909 "Nitrilase family protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 147 (56.8 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:    42 ATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAI 101
             ATL++     A     G+Q+VV PEA +GGYP+G  FG  +  R  +G+E F +Y A+AI
Sbjct:    20 ATLEQILSYEAAIIEAGAQLVVMPEALLGGYPKGEGFGTQLGYRLPEGREAFARYFANAI 79

Query:   102 DVPG 105
             +VPG
Sbjct:    80 EVPG 83

GO:0000257 "nitrilase activity" evidence=ISS

GO:0009683 "indoleacetic acid metabolic process" evidence=ISS

TIGR_CMR|SPO_A0114 SPO_A0114 "nitrilase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 26/46 (56%), Positives = 32/46 (69%)

Query:    28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
             A  VQAS +F D   T  KA  L+AEA+G G+++VVFPE FI GYP
Sbjct:    12 AAAVQASPVFLDAHKTAQKAVDLIAEAAGNGAELVVFPEVFIPGYP 57

GO:0008152 "metabolic process" evidence=ISS

GO:0016815 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles" evidence=ISS

ASPGD|ASPL0000068634 AN7367 [Emericella nidulans (taxid:162425)]

 Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/81 (34%), Positives = 43/81 (53%)

Query:    24 STVRATVVQASTIFNDTPA-TLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSI 82
             S ++  + Q+ T    T A TL   +     A+  G+ +++FPEA++GGYPR   FG   
Sbjct:     2 SKLKVAISQSHT--RQTLADTLIALKHTALAAAARGADILLFPEAYLGGYPRTATFGTRF 59

Query:    83 ANRTAKGKEDFRKYHASAIDV 103
               R A G+E F  Y   A+D+
Sbjct:    60 GFREAHGREQFLHYFNGAVDL 80

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46011	NRL4_ARATH	3, ., 5, ., 5, ., 4	0.7263	0.9047	0.2676	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037300001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (124 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003698001	SubName- Full=Chromosome chr2 scaffold_148, whole genome shotgun sequence; (156 aa)			•						0.506
	GSVIVG00037299001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (195 aa)			•						0.495
	GSVIVG00037301001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (191 aa)			•						0.490
	GSVIVG00003682001	SubName- Full=Chromosome chr2 scaffold_148, whole genome shotgun sequence; (111 aa)			•						0.482
	GSVIVG00009415001	SubName- Full=Chromosome chr2 scaffold_233, whole genome shotgun sequence; (108 aa)			•						0.475

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
PLN02504	346	PLN02504, PLN02504, nitrilase	2e-58
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	5e-27
pfam00795	172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	2e-12
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	2e-10
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	1e-08
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	3e-07
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	8e-06
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	3e-04
cd07574	280	cd07574, nitrilase_Rim1_like, Uncharacterized subg	6e-04
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	8e-04
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	9e-04
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	0.001
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	0.001
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	0.001
PRK13981	540	PRK13981, PRK13981, NAD synthetase; Provisional	0.004

>gnl|CDD|178120 PLN02504, PLN02504, nitrilase

 Score =  182 bits (464), Expect = 2e-58
 Identities = 75/101 (74%), Positives = 89/101 (88%)

Query: 5   ASDNAPLLAEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVF 64
            +D   +  EVDMG D+S+STVRATVVQAST+F DTPATLDKAERL+AEA+ YGSQ+VVF
Sbjct: 4   TADMPAVEPEVDMGADASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVF 63

Query: 65  PEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDVPG 105
           PEAFIGGYPRG+ FG++I +R+ KG+EDFRKYHASAIDVPG
Sbjct: 64  PEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDVPG 104

Length = 346

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score = 99.9 bits (250), Expect = 5e-27
 Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query: 26  VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANR 85
           V+   VQA+ +F D  AT++KA RL+ EA+  G+Q+VVFPEAFI GYP    FG      
Sbjct: 1   VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFG-----A 55

Query: 86  TAKGKEDFRKYHASAIDVPG 105
            A+G+E F +Y+ ++++V G
Sbjct: 56  PAEGRELFARYYENSVEVDG 75

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 17/79 (21%)

Query: 27  RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRT 86
           +  +VQ      D  A L K   L+ EA+  G+ +VV PE FI GY  G           
Sbjct: 1   KVALVQLPPSAFDLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHG----------- 49

Query: 87  AKGKEDFRKYHASAIDVPG 105
                   +Y   A  +PG
Sbjct: 50  ------ATEYLELAEAIPG 62

This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins. Length = 172

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
          S +R    Q +    D    L +  RL+ EA+  G+ +VVFPE F+ GYP
Sbjct: 1  SMMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYP 50

Length = 274

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 30 VVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
           VQ +    D  A L KA RL+ EA+  G+ ++V PE F+ GY
Sbjct: 3  AVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGY 45

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 25  TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIAN 84
            VRA  VQ S +      TL K    +AEA+G G Q++VFPE F+  YP    +   +  
Sbjct: 2   IVRAAAVQISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETFVPYYP----YFSFVQP 57

Query: 85  RTAKGKEDFRKYHASAIDVPG 105
               GKE  R Y   A+ VPG
Sbjct: 58  PVLMGKEHLRLYE-QAVVVPG 77

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75
          R  + Q      D  A L + +   A A+  G+ ++VFPE F+ GY  G
Sbjct: 1  RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIG 49

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 31 VQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
          +Q  ++  D  A L KA  L  EA+  G+ ++ FPE    GY
Sbjct: 5  IQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGY 46

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 37 FNDTPATLDKAERLLAEASGYGSQVVVFPEAF 68
          +        K E  +AEA+GYG+ ++VFPE F
Sbjct: 13 YASFEEFAAKVEYWVAEAAGYGADLLVFPEYF 44

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 280

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score = 36.6 bits (86), Expect = 8e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 27 RATVVQ-ASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAF 68
          R  ++Q  ST   D  A L +A+ L+ EA+  G+++VV PE F
Sbjct: 1  RVALIQMTST--ADKEANLARAKELIEEAAAQGAKLVVLPECF 41

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 30 VVQASTIF---NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
          VV A+  F   +D  A +DKAERL+ EA   G+ +++  E F G Y
Sbjct: 7  VVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYY 52

Length = 296

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF 78
          R  +VQ      D    L    R   +A+  G+++V FPE  I GY      
Sbjct: 1  RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRAL 52

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 39 DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75
          D    L+K  RLLAEA+  G+ +VVFPE  +  +  G
Sbjct: 11 DKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDG 47

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
          +  ++Q   ++ D  A +++ E L+ EA+  G+ ++V PE +  GY
Sbjct: 1  KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGY 46

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
          +R  + Q +    D      K     AEA+  G+ +++FPE F+ GYP
Sbjct: 1  LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYP 48

Length = 540

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.75
PLN02504	346	nitrilase	99.74
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	99.45
COG0388	274	Predicted amidohydrolase [General function predict	99.39
PLN02747	296	N-carbamolyputrescine amidase	99.39
PRK02628	679	nadE NAD synthetase; Reviewed	99.36
PRK10438	256	C-N hydrolase family amidase; Provisional	99.33
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	99.32
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	99.3
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	99.29
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	99.28
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	99.27
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	99.27
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	99.27
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	99.26
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	99.23
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.22
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	99.21
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	99.2
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	99.2
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	99.2
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	99.2
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	99.2
PRK13981	540	NAD synthetase; Provisional	99.19
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	99.18
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	99.17
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	99.15
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	99.15
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	99.13
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	99.11
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	99.1
PLN02798	286	nitrilase	99.09
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	99.08
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	99.05
PLN00202	405	beta-ureidopropionase	99.0
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	98.99
PRK13287	333	amiF formamidase; Provisional	98.99
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	98.93
PRK13286	345	amiE acylamide amidohydrolase; Provisional	98.79
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	98.7
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	98.6
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	98.27
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	98.05
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	97.68
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	96.99
PRK13825	388	conjugal transfer protein TraB; Provisional	96.08
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	93.97
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	86.44

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.75  E-value=2.2e-18  Score=133.28  Aligned_cols=83  Identities=63%  Similarity=1.104  Sum_probs=80.0

Q ss_pred             cCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccccccCccChHHHHHHHHcccC
Q 034056           23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAID  102 (105)
Q Consensus        23 ~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~  102 (105)
                      +.+.||+++|......|..++|+++++++.+|+.+|++||+|||.|+.|||.|+.||-.+|.|.++||+.|++|++++|+
T Consensus        15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe   94 (337)
T KOG0805|consen   15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE   94 (337)
T ss_pred             ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 034056          103 VPG  105 (105)
Q Consensus       103 i~g  105 (105)
                      ++|
T Consensus        95 v~g   97 (337)
T KOG0805|consen   95 VPG   97 (337)
T ss_pred             CCC
Confidence            987

>PLN02504 nitrilase

Probab=99.74  E-value=9.8e-18  Score=132.74  Aligned_cols=99  Identities=76%  Similarity=1.204  Sum_probs=80.8

Q ss_pred             CCCccc-cccccccccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCcccccccc
Q 034056            7 DNAPLL-AEVDMGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANR   85 (105)
Q Consensus         7 ~~~~~~-~~~~~~~~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~   85 (105)
                      ..||-. -|+||+++...+++|||++|+++.+.|+++|++++.++|++|+++|+|||||||+|++||+.+..+...++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~   84 (346)
T PLN02504          5 ADMPAVEPEVDMGADASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDR   84 (346)
T ss_pred             CCCccccCCccccccccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccc
Confidence            455643 5899999977788999999999988899999999999999999999999999999999999865443233334


Q ss_pred             CccChHHHHHHHHcccCCCC
Q 034056           86 TAKGKEDFRKYHASAIDVPG  105 (105)
Q Consensus        86 ~~~~~~~~~~~~~~sv~i~g  105 (105)
                      ..++++.+.+|++++++++|
T Consensus        85 ~~~~~~~~~~~~~~a~~~~g  104 (346)
T PLN02504         85 SPKGREDFRKYHASAIDVPG  104 (346)
T ss_pred             cchhHHHHHHHHHhcccCCC
Confidence            44566778888888877664

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=99.45  E-value=3.3e-13  Score=103.79  Aligned_cols=73  Identities=48%  Similarity=0.777  Sum_probs=57.8

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccccccCccChHHHHHHHHcccCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSIANRTAKGKEDFRKYHASAIDV  103 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~i  103 (105)
                      ||||++|+.+.++|+++|++++.+++++|+++|++||||||+|++||+....+..     ...+.+.+.++++.+.+.
T Consensus         1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~-----~~~~~~~~~~~~~~~~~~   73 (297)
T cd07564           1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGA-----PAEGRELFARYYENSVEV   73 (297)
T ss_pred             CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCC-----cccchHHHHHHHHhCcCC
Confidence            6899999998888999999999999999999999999999999999997543321     122445555665555443

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=99.39  E-value=6.7e-13  Score=100.36  Aligned_cols=52  Identities=35%  Similarity=0.595  Sum_probs=49.5

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      ++|||++|+.+...|+++|++++.+++++|+++|||||||||+|+|||++..
T Consensus         2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~   53 (274)
T COG0388           2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED   53 (274)
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc
Confidence            5899999999988999999999999999999999999999999999999873

>PLN02747 N-carbamolyputrescine amidase

Probab=99.39  E-value=8.4e-13  Score=101.11  Aligned_cols=54  Identities=31%  Similarity=0.431  Sum_probs=50.0

Q ss_pred             cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      +|.+++|||++|+++. +|++.|++++.+++++|++.|+|||||||+|++||++.
T Consensus         2 ~~~~~~~va~~Q~~~~-~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~   55 (296)
T PLN02747          2 GMGRKVVVAALQFACS-DDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQ   55 (296)
T ss_pred             CCCcceEEEEEEecCC-CCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCcc
Confidence            5667899999999986 89999999999999999999999999999999999764

>PRK02628 nadE NAD synthetase; Reviewed

Probab=99.36  E-value=1.2e-12  Score=111.50  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=54.4

Q ss_pred             cccccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCC
Q 034056           17 MGTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTN   77 (105)
Q Consensus        17 ~~~~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~   77 (105)
                      ++.+|..+.||||++|+++.++|++.|++++.+++++|+++|||||||||+|+|||++...
T Consensus         4 ~~~~~~~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl   64 (679)
T PRK02628          4 FFSIYRHGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDL   64 (679)
T ss_pred             chhhhhCCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchh
Confidence            3334556789999999999989999999999999999999999999999999999997543

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=99.33  E-value=2.2e-12  Score=97.57  Aligned_cols=49  Identities=31%  Similarity=0.556  Sum_probs=45.3

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      +||||++|+++.++|+++|++++.++++++  +|+|||||||+|++||+..
T Consensus         3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~   51 (256)
T PRK10438          3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAME   51 (256)
T ss_pred             CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCccc
Confidence            599999999998889999999999999985  6999999999999999763

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=99.32  E-value=3.1e-12  Score=96.34  Aligned_cols=49  Identities=33%  Similarity=0.554  Sum_probs=46.5

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      ||||++|+.+. +|+++|++++.+++++|+++|+|||||||+|++||...
T Consensus         1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~   49 (279)
T TIGR03381         1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCK   49 (279)
T ss_pred             CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCC
Confidence            68999999987 89999999999999999999999999999999999764

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.30  E-value=4.4e-12  Score=95.17  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=47.5

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      +|||++|+++.++|+++|++++.+++++|+++|+|||||||+++|||+..
T Consensus         1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~   50 (258)
T cd07578           1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWY   50 (258)
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcC
Confidence            58999999999899999999999999999999999999999999999864

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07576 R-amidase_like Pseudomonas sp

Probab=99.29  E-value=5.4e-12  Score=93.73  Aligned_cols=52  Identities=31%  Similarity=0.512  Sum_probs=48.1

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCc
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF   78 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~   78 (105)
                      |||++|+++..+|+++|++++.+++++|+++|+|||||||++++||.....+
T Consensus         1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~   52 (254)
T cd07576           1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAV   52 (254)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchh
Confidence            7999999998789999999999999999999999999999999999875433

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=99.28  E-value=5.7e-12  Score=97.04  Aligned_cols=51  Identities=27%  Similarity=0.350  Sum_probs=47.1

Q ss_pred             CcceEEEeccCCCCC--CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           24 STVRATVVQASTIFN--DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~~--d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      +++|||++|+++.++  ++++|++++.+++++|+++|+|||||||++++||..
T Consensus         2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~   54 (302)
T cd07569           2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFP   54 (302)
T ss_pred             ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCccc
Confidence            479999999988755  899999999999999999999999999999999864

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=99.27  E-value=6.1e-12  Score=94.11  Aligned_cols=49  Identities=31%  Similarity=0.501  Sum_probs=46.7

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      |||++|+++.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus         1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~   49 (261)
T cd07570           1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPE   49 (261)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChH
Confidence            6999999998899999999999999999999999999999999999864

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.27  E-value=7.4e-12  Score=93.79  Aligned_cols=48  Identities=21%  Similarity=0.493  Sum_probs=45.9

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      ||||++|+++.++|++.|++++.+++++|++ |+|||||||++++||..
T Consensus         1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~   48 (252)
T cd07575           1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSM   48 (252)
T ss_pred             CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCc
Confidence            6999999999999999999999999999987 99999999999999975

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.27  E-value=8.8e-12  Score=94.68  Aligned_cols=52  Identities=31%  Similarity=0.447  Sum_probs=47.6

Q ss_pred             CcceEEEeccCCC-------CCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           24 STVRATVVQASTI-------FNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        24 ~~~rIA~vQ~~~~-------~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      +++|||++|+++.       +.++++|++++.+++++|+++|+|||||||+|++||+..
T Consensus         2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~   60 (287)
T cd07568           2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCA   60 (287)
T ss_pred             ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCcc
Confidence            5799999999976       478999999999999999999999999999999999753

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=99.26  E-value=6.8e-12  Score=107.53  Aligned_cols=54  Identities=22%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             CcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCC
Q 034056           24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTN   77 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~   77 (105)
                      +.||||++|+++..+|++.|++++.+.|++|+++||+||||||+++|||++...
T Consensus         2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl   55 (700)
T PLN02339          2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDH   55 (700)
T ss_pred             ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHH
Confidence            369999999998878999999999999999999999999999999999997533

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.23  E-value=1.8e-11  Score=91.45  Aligned_cols=49  Identities=31%  Similarity=0.555  Sum_probs=46.7

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      |||++|+.+.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus         1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~   49 (258)
T cd07584           1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPD   49 (258)
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCcc
Confidence            6999999999899999999999999999999999999999999999864

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=99.22  E-value=1.9e-11  Score=95.05  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=46.0

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhh----CCceEEEcCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASG----YGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~----~gadLIvfPEl~ltGY~~~   75 (105)
                      |||++|+++.++|+++|++++.++|++|++    +|+|||||||+|+|||...
T Consensus         1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~   53 (295)
T cd07566           1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFH   53 (295)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcc
Confidence            699999999888999999999999999988    8999999999999999864

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=99.21  E-value=2.5e-11  Score=91.74  Aligned_cols=49  Identities=37%  Similarity=0.449  Sum_probs=46.7

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      ||||++|+++. .|+++|++++.+++++|+++|+|||||||++++||+.+
T Consensus         1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~   49 (284)
T cd07573           1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQ   49 (284)
T ss_pred             CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcc
Confidence            68999999997 89999999999999999999999999999999999875

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.20  E-value=2.8e-11  Score=90.55  Aligned_cols=50  Identities=30%  Similarity=0.445  Sum_probs=47.3

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      |||++|+++..+|++.|++++++++++|+++|+|||||||++++||....
T Consensus         1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~   50 (261)
T cd07585           1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVR   50 (261)
T ss_pred             CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCc
Confidence            69999999987899999999999999999999999999999999999754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.20  E-value=2.5e-11  Score=91.14  Aligned_cols=50  Identities=30%  Similarity=0.561  Sum_probs=47.2

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      |||++|+++.++|.+.|++++.+++++|+++|++||||||++++||....
T Consensus         1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~   50 (269)
T cd07586           1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGD   50 (269)
T ss_pred             CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchh
Confidence            69999999998999999999999999999999999999999999998753

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.20  E-value=3e-11  Score=96.52  Aligned_cols=54  Identities=19%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             cccCcceEEEeccCCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           21 SSASTVRATVVQASTIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      +-.+.+|||++|+.+.+       +|+++|++++.+++++|+++|++||||||+|++||.+
T Consensus        59 ~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~  119 (363)
T cd07587          59 RPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAF  119 (363)
T ss_pred             CCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccc
Confidence            33557999999998654       4899999999999999999999999999999999864

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=99.20  E-value=3.1e-11  Score=90.17  Aligned_cols=49  Identities=31%  Similarity=0.475  Sum_probs=46.0

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      |||++|+++. +|+++|++++.+++++|+++|+|||||||++++||....
T Consensus         1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~   49 (265)
T cd07572           1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDA   49 (265)
T ss_pred             CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchh
Confidence            6999999988 899999999999999999999999999999999998643

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.20  E-value=3.1e-11  Score=89.90  Aligned_cols=50  Identities=26%  Similarity=0.565  Sum_probs=47.0

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      |||++|+++...|+++|++++.+++++|+++|+|||||||++++||....
T Consensus         1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~   50 (253)
T cd07583           1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDD   50 (253)
T ss_pred             CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhh
Confidence            69999999998899999999999999999999999999999999997643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13981 NAD synthetase; Provisional

Probab=99.19  E-value=2.8e-11  Score=100.25  Aligned_cols=51  Identities=29%  Similarity=0.524  Sum_probs=48.5

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      ||||++|+++.++|++.|++++.+++++|+++|+|||||||++++||+...
T Consensus         1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d   51 (540)
T PRK13981          1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPED   51 (540)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhh
Confidence            699999999998999999999999999999999999999999999998753

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.18  E-value=4.7e-11  Score=89.89  Aligned_cols=50  Identities=32%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      |||++|+++.++++++|++++.+++++|.++|+|||||||++++||+...
T Consensus         1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~   50 (268)
T cd07580           1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFES   50 (268)
T ss_pred             CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCC
Confidence            69999999998999999999999999999999999999999999997643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.17  E-value=4.4e-11  Score=91.76  Aligned_cols=48  Identities=35%  Similarity=0.502  Sum_probs=45.1

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      |||++|+++. .|+++|++++.+++++|+++|+|||||||++++||...
T Consensus         1 ria~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~   48 (279)
T cd07579           1 RIAVAQFAPT-PDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP   48 (279)
T ss_pred             CEEEEeccCc-cCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh
Confidence            6999999998 49999999999999999999999999999999999754

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=99.15  E-value=2.9e-11  Score=91.44  Aligned_cols=48  Identities=33%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             ceEEEeccCCCC-CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056           26 VRATVVQASTIF-NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP   73 (105)
Q Consensus        26 ~rIA~vQ~~~~~-~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~   73 (105)
                      ||||++|+++.+ +|+++|++++++++++|+++|+|||||||+|++||.
T Consensus         1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~   49 (280)
T cd07574           1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELL   49 (280)
T ss_pred             CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHH
Confidence            699999999874 799999999999999999999999999999999863

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=99.15  E-value=6e-11  Score=92.71  Aligned_cols=51  Identities=27%  Similarity=0.423  Sum_probs=47.6

Q ss_pred             ceEEEeccCCCCCCH-------HHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDT-------PATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~-------~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      .|+|++|+.+.+.++       ++|++++.+++++|+++|+|||||||+|+|||....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~   58 (299)
T cd07567           1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTR   58 (299)
T ss_pred             CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCc
Confidence            378999999999998       999999999999999999999999999999998654

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=99.13  E-value=7.8e-11  Score=83.52  Aligned_cols=48  Identities=38%  Similarity=0.628  Sum_probs=43.5

Q ss_pred             eEEEeccCC--CCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           27 RATVVQAST--IFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        27 rIA~vQ~~~--~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      |||++|+++  .+.|.++|++++.+++++|+++|+|||||||++++||+.
T Consensus         1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~   50 (186)
T PF00795_consen    1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPN   50 (186)
T ss_dssp             EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-G
T ss_pred             CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhccccc
Confidence            799999996  668999999999999999999999999999999999954

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.11  E-value=9.9e-11  Score=87.14  Aligned_cols=47  Identities=36%  Similarity=0.587  Sum_probs=44.6

Q ss_pred             EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      ||++|+++. +|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus         1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~   47 (255)
T cd07581           1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDG   47 (255)
T ss_pred             CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcc
Confidence            689999998 89999999999999999999999999999999999864

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=99.10  E-value=1.5e-10  Score=89.33  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=44.6

Q ss_pred             ceEEEeccCC----CCCCHHHHHHHHHHHHHHHhh--CCceEEEcCCCCCCCCCC
Q 034056           26 VRATVVQAST----IFNDTPATLDKAERLLAEASG--YGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        26 ~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~--~gadLIvfPEl~ltGY~~   74 (105)
                      ++||++|+++    ..+++++|++++.+++++|++  +|+|||||||++++||+.
T Consensus         1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~   55 (291)
T cd07565           1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMY   55 (291)
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCC
Confidence            4799999998    567999999999999999986  599999999999999985

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>PLN02798 nitrilase

Probab=99.09  E-value=2.5e-10  Score=87.32  Aligned_cols=54  Identities=33%  Similarity=0.547  Sum_probs=47.8

Q ss_pred             cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCC-CCCCCCC
Q 034056           21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAF-IGGYPRG   75 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~-ltGY~~~   75 (105)
                      ||.+.+|||++|+.+. +|+++|++++.+++++|+++|+|||||||+| .+||...
T Consensus         6 ~~~~~~ria~~Q~~~~-~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~   60 (286)
T PLN02798          6 TAGSSVRVAVAQMTST-NDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDG   60 (286)
T ss_pred             cccCccEEEEEEccCC-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCch
Confidence            4567899999999975 8999999999999999999999999999996 4788743

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=99.08  E-value=2.4e-10  Score=84.07  Aligned_cols=50  Identities=36%  Similarity=0.562  Sum_probs=46.9

Q ss_pred             EEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCC
Q 034056           28 ATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTN   77 (105)
Q Consensus        28 IA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~   77 (105)
                      ||++|+++.+++.++|++++.+++++|.++|+|||||||++++||..+..
T Consensus         1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~   50 (253)
T cd07197           1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESA   50 (253)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccc
Confidence            68999999989999999999999999999999999999999999987643

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.05  E-value=2.6e-10  Score=85.45  Aligned_cols=46  Identities=28%  Similarity=0.478  Sum_probs=42.8

Q ss_pred             eEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           27 RATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        27 rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      |||++|+.+.++|+++|++++.+++++|.   +|||||||++++||+..
T Consensus         1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~   46 (259)
T cd07577           1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFT   46 (259)
T ss_pred             CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcC
Confidence            69999999988899999999999999884   99999999999999864

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN00202 beta-ureidopropionase

Probab=99.00  E-value=6.2e-10  Score=90.35  Aligned_cols=52  Identities=21%  Similarity=0.373  Sum_probs=47.0

Q ss_pred             cCcceEEEeccCCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           23 ASTVRATVVQASTIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        23 ~~~~rIA~vQ~~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      .+++|||++|+++.+       .++++|++++.+++++|+++|+|||||||+|++||..
T Consensus        84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~  142 (405)
T PLN00202         84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAF  142 (405)
T ss_pred             CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhcccccc
Confidence            457999999999753       4899999999999999999999999999999999964

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=98.99  E-value=6.4e-10  Score=84.67  Aligned_cols=48  Identities=27%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             ceEEEeccCCCCC------CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056           26 VRATVVQASTIFN------DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP   73 (105)
Q Consensus        26 ~rIA~vQ~~~~~~------d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~   73 (105)
                      +|||++|+++..+      |.++|++++.+++++|+++|+|||||||++++||+
T Consensus         1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~   54 (270)
T cd07571           1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDL   54 (270)
T ss_pred             CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccc
Confidence            5899999998865      67999999999999999999999999999999997

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>PRK13287 amiF formamidase; Provisional

Probab=98.99  E-value=9.2e-10  Score=86.97  Aligned_cols=52  Identities=17%  Similarity=0.249  Sum_probs=46.2

Q ss_pred             CcceEEEeccCC----CCCCHHHHHHHHHHHHHHHhhC--CceEEEcCCCCCCCCCCC
Q 034056           24 STVRATVVQAST----IFNDTPATLDKAERLLAEASGY--GSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        24 ~~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~~--gadLIvfPEl~ltGY~~~   75 (105)
                      ..+|||++|++.    ...++++|++++.+++++|++.  |+|||||||++++||+..
T Consensus        12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~   69 (333)
T PRK13287         12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTK   69 (333)
T ss_pred             CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCcc
Confidence            469999999986    3468999999999999999864  899999999999999864

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=98.93  E-value=1.8e-09  Score=82.81  Aligned_cols=49  Identities=29%  Similarity=0.464  Sum_probs=43.5

Q ss_pred             eEEEeccCCCC----CCHHHHHHHHHHHHHHHhh-----CCceEEEcCCCCCCCCCCC
Q 034056           27 RATVVQASTIF----NDTPATLDKAERLLAEASG-----YGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        27 rIA~vQ~~~~~----~d~~~Nl~~i~~~i~~Aa~-----~gadLIvfPEl~ltGY~~~   75 (105)
                      +++++|..+..    +|++.|++++.++|++|++     +|+|||||||+|+|||+.+
T Consensus         2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~   59 (294)
T cd07582           2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMG   59 (294)
T ss_pred             eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcc
Confidence            56788988776    7999999999999999987     4799999999999999874

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=98.79  E-value=9.1e-09  Score=81.94  Aligned_cols=51  Identities=22%  Similarity=0.213  Sum_probs=43.2

Q ss_pred             CcceEEEeccCC----CCCCHHHHHHHHHHHHHHHh--hCCceEEEcCCCCCCCCCC
Q 034056           24 STVRATVVQAST----IFNDTPATLDKAERLLAEAS--GYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        24 ~~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa--~~gadLIvfPEl~ltGY~~   74 (105)
                      ..++||++|.+.    ...|+.+|++++.+++++|.  ..|+|||||||++++||.+
T Consensus        11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y   67 (345)
T PRK13286         11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMY   67 (345)
T ss_pred             CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCc
Confidence            359999999972    22578999999999999986  4589999999999999764

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=98.70  E-value=2.7e-08  Score=78.44  Aligned_cols=58  Identities=22%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCccccc
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNFGVSI   82 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~~~~~   82 (105)
                      ++++|++|......++.+|+++++..+++|+++|++||||||++++||.....|-++.
T Consensus        13 ~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~   70 (298)
T KOG0806|consen   13 NATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYL   70 (298)
T ss_pred             ccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchh
Confidence            5899999999997799999999999999999999999999999999999853333333

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=98.60  E-value=1.1e-07  Score=73.83  Aligned_cols=71  Identities=27%  Similarity=0.318  Sum_probs=52.7

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCC-CCCCCCCccccccccCccChHHHHHHHHcc
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIG-GYPRGTNFGVSIANRTAKGKEDFRKYHASA  100 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~lt-GY~~~~~~~~~~~~~~~~~~~~~~~~~~~s  100 (105)
                      .-+||++|+.+. .|..+|++.+.++|++|+++||++|+|||+|.. |-..    +..+...++.+-+.-.+|.+.+
T Consensus        15 ~~~vAv~Qm~S~-~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~----~esi~Lae~l~~k~m~~y~ela   86 (295)
T KOG0807|consen   15 LKRVAVAQMTSS-NDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNP----LESIELAEPLDGKFMEQYRELA   86 (295)
T ss_pred             cceeEEEeeccc-hHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCc----ccceecccccChHHHHHHHHHH
Confidence            378999999998 799999999999999999999999999999741 1111    1122223334556666776543

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=98.27  E-value=1.1e-06  Score=70.11  Aligned_cols=50  Identities=22%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             CcceEEEeccCCCCC------CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           24 STVRATVVQASTIFN------DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~~------d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      +.+||+++|.++...      +.++|++++.++++++.+ ++||||+||.++++|..
T Consensus       158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~  213 (391)
T TIGR00546       158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLE  213 (391)
T ss_pred             CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchh
Confidence            468999999998754      357899999999999877 89999999999998854

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=98.05  E-value=5.9e-06  Score=68.08  Aligned_cols=48  Identities=21%  Similarity=0.175  Sum_probs=40.4

Q ss_pred             cceEEEeccCCCC------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056           25 TVRATVVQASTIF------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP   73 (105)
Q Consensus        25 ~~rIA~vQ~~~~~------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~   73 (105)
                      ++|||++|.+...      .+.++|++++.+++++ +++|+|+||+||.++++|.
T Consensus       219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~  272 (505)
T PRK00302        219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLL  272 (505)
T ss_pred             CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCccccccc
Confidence            5899999999875      3567899999999985 4679999999999987763

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=97.68  E-value=8.8e-05  Score=60.51  Aligned_cols=48  Identities=13%  Similarity=0.114  Sum_probs=40.2

Q ss_pred             ceEEEeccCCCCCC------HHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056           26 VRATVVQASTIFND------TPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP   73 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d------~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~   73 (105)
                      .+|+++|.+.....      .++|+++..++++++.++++|+||+||++.++|.
T Consensus       195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~  248 (418)
T PRK12291        195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLAL  248 (418)
T ss_pred             CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccch
Confidence            49999999877332      2689999999999998889999999999887654

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=96.99  E-value=0.0006  Score=57.85  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCCCc
Q 034056           22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF   78 (105)
Q Consensus        22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~~~   78 (105)
                      |.++++||.++++.=-.|.+.|.++|.+.|++|+++||.+=+=||+=+|||.++-+|
T Consensus         1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf   57 (706)
T KOG2303|consen    1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHF   57 (706)
T ss_pred             CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhh
Confidence            346799999999865569999999999999999999999999999999999998877

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=96.08  E-value=0.0071  Score=49.21  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           42 ATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        42 ~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      ++.+++.+.+++|.++|+|+|||||+++++|..
T Consensus       206 ~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~  238 (388)
T PRK13825        206 ERRRELIATVRAAAAAGARVVVLPESALGFWTP  238 (388)
T ss_pred             HHHHHHHHHHHhhcccCCCEEEccCcccccccc
Confidence            444456667777788899999999999999864

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=93.97  E-value=0.11  Score=41.34  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             cCcceEEEeccCCCCC-------CHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           23 ASTVRATVVQASTIFN-------DTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        23 ~~~~rIA~vQ~~~~~~-------d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      .+.++|+++|-.+...       ....-.+++...|+.|+-.|+.+|||.|.|.-+|.+
T Consensus        71 pr~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfaf  129 (387)
T KOG0808|consen   71 PRVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAF  129 (387)
T ss_pred             CcEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhh
Confidence            3457999999765522       234566788888998989999999999999877653

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=86.44  E-value=1.4  Score=37.24  Aligned_cols=50  Identities=22%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             CcceEEEeccCCCCC---CHHHHHHHHHHHHHHH---h--hCCceEEEcCCCCCCCCC
Q 034056           24 STVRATVVQASTIFN---DTPATLDKAERLLAEA---S--GYGSQVVVFPEAFIGGYP   73 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~~---d~~~Nl~~i~~~i~~A---a--~~gadLIvfPEl~ltGY~   73 (105)
                      +.++|+++|.++...   |.++-.+.+...+.+.   .  .+++|+||+||..++-+.
T Consensus       226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~  283 (518)
T COG0815         226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL  283 (518)
T ss_pred             CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch
Confidence            359999999987621   2222222222222222   2  378999999999886433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	2e-09
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	2e-08
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	3e-08
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	3e-07
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	4e-07
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	2e-06
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	2e-05
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	3e-05
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	3e-05
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	4e-05
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	2e-04
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	4e-04

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 18 GTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG 75
          G     S +R  ++Q +    D    LD  +   A AS  G+Q+++ PE F  GY   
Sbjct: 13 GLVIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPS 70

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
          V+   VQ +    +      KAE+L+ EAS  G+Q+VV PE F  GY
Sbjct: 2  VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGY 48

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 12/55 (21%), Positives = 21/55 (38%)

Query: 18 GTDSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
          G     S ++  + Q   +F D+     +  +   +       VVV PE +  GY
Sbjct: 13 GLVPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGY 67

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 25 TVRATVVQASTIF--NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
           +   V Q   I         + +   +L +A+  G+  +VFPE  +  +
Sbjct: 3  QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTF 52

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGY 72
            +R ++VQ ST ++D     D    LL   +G  S +V+ PE F  G+
Sbjct: 2  HDLRISLVQGSTRWHDPAGNRDYYGALLEPLAG-QSDLVILPETFTSGF 49

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 25  TVRATVVQ-------ASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
            VR   +Q        + I     A  +K + ++  A+  G  +V   EA+   + 
Sbjct: 72  IVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFA 127

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 22 SASTVRATVVQ-ASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAF 68
          +       V Q  S   ND       A+ ++  A     ++V  PE F
Sbjct: 11 ATGRHFIAVCQMTSD--NDLEKNFQAAKNMIERAGEKKCEMVFLPECF 56

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 6/58 (10%)

Query: 21 SSASTVRATVVQASTIFNDTP----ATLDKAERLL--AEASGYGSQVVVFPEAFIGGY 72
                    +Q      ++       ++   R L   +A   G ++++FPE    G 
Sbjct: 9  KPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGL 66

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 21 SSASTVRATVVQAS----TIFNDTPATLDKAERLL--AEASGYGSQVVVFPEAFIGGYPR 74
          SS  TV   VV           +      K   ++   +    G  +VVFPE  + G   
Sbjct: 8  SSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMY 67

Query: 75 GT 76
            
Sbjct: 68 DP 69

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 24 STVRATVVQ-ASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAF 68
          ST R  ++Q   +  +     L +A  L+ EA+  G+ +V  PE F
Sbjct: 2  STFRLALIQLQVS--SIKSDNLTRACSLVREAAKQGANIVSLPECF 45

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 23 ASTVRATVVQASTIFNDTPATLDKAERLLAEA--SGYGSQVVVFPEAF 68
          +  ++  +VQ S    D  A L +A   +  A      +++VV PE F
Sbjct: 8  SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECF 55

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
          +   R  + Q +    D    + K       A   G+  ++ PE  + GYP
Sbjct: 4  SMKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	99.46
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	99.42
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	99.42
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	99.36
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.34
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	99.32
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	99.31
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	99.29
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	99.29
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.27
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	99.27
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.17
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	99.07
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	99.06
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	99.06

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=99.46  E-value=8.3e-14  Score=115.10  Aligned_cols=52  Identities=21%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      +||||++|+++.++|++.|++++.+++++|+++|||||||||+|+|||++..
T Consensus         6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~D   57 (565)
T 4f4h_A            6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPED   57 (565)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGG
T ss_pred             ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHH
Confidence            6999999999999999999999999999999999999999999999999754

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=99.42  E-value=2.5e-13  Score=102.37  Aligned_cols=53  Identities=21%  Similarity=0.374  Sum_probs=49.9

Q ss_pred             cCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           23 ASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        23 ~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      .++||||++|+++.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus        18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~   70 (281)
T 3p8k_A           18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLE   70 (281)
T ss_dssp             TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGG
T ss_pred             CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChh
Confidence            45799999999998899999999999999999999999999999999999864

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=99.42  E-value=3.4e-13  Score=100.20  Aligned_cols=50  Identities=38%  Similarity=0.515  Sum_probs=48.1

Q ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        26 ~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      ||||++|+++.++|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus         2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~   51 (262)
T 3ivz_A            2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE   51 (262)
T ss_dssp             CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCS
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCC
Confidence            79999999999899999999999999999999999999999999999864

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=99.36  E-value=6.8e-13  Score=100.11  Aligned_cols=54  Identities=30%  Similarity=0.338  Sum_probs=50.1

Q ss_pred             ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      +.++||||++|+++..+|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus        17 ~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~   70 (283)
T 3hkx_A           17 RGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPS   70 (283)
T ss_dssp             TTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHH
T ss_pred             cCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChH
Confidence            345699999999999889999999999999999999999999999999999864

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=99.34  E-value=1.2e-12  Score=108.08  Aligned_cols=55  Identities=22%  Similarity=0.379  Sum_probs=50.8

Q ss_pred             ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      |+++||||++|+++.++|++.|++++.+++++|+++|+|||||||+++|||++..
T Consensus         1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d   55 (590)
T 3n05_A            1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED   55 (590)
T ss_dssp             -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGG
T ss_pred             CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHH
Confidence            3457999999999998999999999999999999999999999999999999854

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=99.32  E-value=1.7e-12  Score=108.36  Aligned_cols=55  Identities=22%  Similarity=0.232  Sum_probs=50.3

Q ss_pred             ccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        22 ~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      +++++|||++|+++.++|++.|++++.+++++|+++|+|||||||+++|||++..
T Consensus         2 ~M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~d   56 (634)
T 3ilv_A            2 SLSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCED   56 (634)
T ss_dssp             --CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGG
T ss_pred             CCCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHH
Confidence            3457999999999998999999999999999999999999999999999999854

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=99.31  E-value=4.2e-12  Score=95.24  Aligned_cols=54  Identities=26%  Similarity=0.381  Sum_probs=48.4

Q ss_pred             cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHH--hhCCceEEEcCCCCCCCCCC
Q 034056           21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEA--SGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~A--a~~gadLIvfPEl~ltGY~~   74 (105)
                      +|++++|||++|+++..+|++.|++++.+++++|  +++|+|||||||++++||..
T Consensus         6 ~m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~   61 (291)
T 1f89_A            6 ILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYST   61 (291)
T ss_dssp             SBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCH
T ss_pred             cccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCCh
Confidence            3556799999999955589999999999999999  88999999999999999964

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=99.29  E-value=4e-12  Score=95.50  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             CcceEEEeccCCCC--CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           24 STVRATVVQASTIF--NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~--~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      +++|||++|+++..  +|++.|++++.+++++|+++|+|||||||++++||..
T Consensus         2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~   54 (303)
T 1uf5_A            2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFP   54 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGG
T ss_pred             ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCc
Confidence            46899999999886  7999999999999999999999999999999999964

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=99.29  E-value=3.3e-12  Score=94.72  Aligned_cols=49  Identities=31%  Similarity=0.489  Sum_probs=46.4

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      ++|||++|+++.++|++.|++++.+++++| ++|+|||||||++++||+.
T Consensus         3 ~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~   51 (266)
T 2e11_A            3 DLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSN   51 (266)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCS
T ss_pred             ccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCCh
Confidence            589999999999899999999999999999 8999999999999999964

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=99.27  E-value=4.3e-12  Score=106.90  Aligned_cols=57  Identities=21%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             ccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           20 DSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        20 ~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      .|.++++|||++|+++.++|++.|++++.+++++|+++|++||||||+++|||++..
T Consensus         7 ~~~~g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~d   63 (680)
T 3sdb_A            7 AYQHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIED   63 (680)
T ss_dssp             TGGGTEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGG
T ss_pred             HhhCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHH
Confidence            455678999999999998999999999999999999999999999999999999753

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=99.27  E-value=7.8e-12  Score=93.28  Aligned_cols=51  Identities=29%  Similarity=0.409  Sum_probs=47.3

Q ss_pred             CcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCC
Q 034056           24 STVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~   75 (105)
                      +++|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||+..
T Consensus         2 ~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~   52 (276)
T 2w1v_A            2 STFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTT   52 (276)
T ss_dssp             CEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTT
T ss_pred             CccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHH
Confidence            3589999999976 89999999999999999999999999999999999764

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.17  E-value=4.2e-11  Score=94.89  Aligned_cols=53  Identities=19%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      |.++++|||++|+++. .|+++|++++.+++++|+++|+|||||||+|++||..
T Consensus        10 m~~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~   62 (440)
T 1ems_A           10 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLN   62 (440)
T ss_dssp             CCCSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSS
T ss_pred             cccCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcc
Confidence            5566799999999987 7999999999999999999999999999999988764

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=99.07  E-value=1e-10  Score=90.35  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=45.1

Q ss_pred             cceEEEeccCC----CCCCHHHHHHHHHHHHHHHhh--CCceEEEcCCCCCCCCCCC
Q 034056           25 TVRATVVQAST----IFNDTPATLDKAERLLAEASG--YGSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        25 ~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~--~gadLIvfPEl~ltGY~~~   75 (105)
                      ++|||++|+++    .++|+++|++++.+++++|++  +|+|||||||++++||++.
T Consensus        13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~   69 (334)
T 2dyu_A           13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTA   69 (334)
T ss_dssp             CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTT
T ss_pred             ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCC
Confidence            58999999984    345889999999999999987  7999999999999998754

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=99.06  E-value=1.7e-10  Score=91.57  Aligned_cols=54  Identities=20%  Similarity=0.303  Sum_probs=47.2

Q ss_pred             cccCcceEEEeccCCCC-------CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCC
Q 034056           21 SSASTVRATVVQASTIF-------NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~-------~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~   74 (105)
                      .+.+++|||++|+++..       +++++|++++.+++++|+++|+|||||||+|++||..
T Consensus        68 ~~~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~  128 (405)
T 2vhh_A           68 RKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF  128 (405)
T ss_dssp             SCCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC
T ss_pred             cCCCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccc
Confidence            44557999999998753       3679999999999999999999999999999999864

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=99.06  E-value=1.1e-10  Score=90.46  Aligned_cols=51  Identities=24%  Similarity=0.271  Sum_probs=45.3

Q ss_pred             CcceEEEeccCC----CCCCHHHHHHHHHHHHHHHhh--CCceEEEcCCCCCCCCCC
Q 034056           24 STVRATVVQAST----IFNDTPATLDKAERLLAEASG--YGSQVVVFPEAFIGGYPR   74 (105)
Q Consensus        24 ~~~rIA~vQ~~~----~~~d~~~Nl~~i~~~i~~Aa~--~gadLIvfPEl~ltGY~~   74 (105)
                      .++|||++|+++    .++|++.|++++.+++++|++  +|+|||||||++++||++
T Consensus        11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~   67 (341)
T 2uxy_A           11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMY   67 (341)
T ss_dssp             TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCC
T ss_pred             CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCC
Confidence            468999999984    346899999999999999987  799999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	6e-13
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	6e-11
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	6e-10
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	3e-09

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.4 bits (145), Expect = 6e-13
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 26 VRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP 73
          V+   +Q      +      KAE+L+ EAS  G+++VV PE F  GY 
Sbjct: 2  VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYN 49

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 6e-11
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 23 ASTVRATVVQASTIFNDTPATLDKAERLLAEAS--GYGSQVVVFPEAFIGGYP 73
          +  ++  +VQ S    D  A L +A   +  A      +++VV PE F   Y 
Sbjct: 7  SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYS 59

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 52.4 bits (124), Expect = 6e-10
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 25 TVRATVVQASTIFNDTP--ATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGTNF 78
           +   V Q   I         + +   +L +A+  G+  +VFPE  +  +    +F
Sbjct: 3  QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHF 58

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 3e-09
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 22 SASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAF-IGGYPRGTNF 78
          +       V Q  T  ND       A+ ++  A     ++V  PE F   G  +    
Sbjct: 2  ATGRHFIAVCQM-TSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQI 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	99.52
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	99.51
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	99.4
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.4

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=1.1e-14  Score=106.09  Aligned_cols=52  Identities=33%  Similarity=0.460  Sum_probs=49.4

Q ss_pred             cceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           25 TVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        25 ~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      +||||++|+++.++|+++|++++.+++++|+++|+|||||||+|+|||+.+.
T Consensus         1 ~~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~   52 (262)
T d1j31a_           1 MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFES   52 (262)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSS
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhh
Confidence            3799999999999999999999999999999999999999999999998765

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=8.8e-15  Score=106.49  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=51.3

Q ss_pred             ccccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhC--CceEEEcCCCCCCCCCCC
Q 034056           20 DSSASTVRATVVQASTIFNDTPATLDKAERLLAEASGY--GSQVVVFPEAFIGGYPRG   75 (105)
Q Consensus        20 ~~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~--gadLIvfPEl~ltGY~~~   75 (105)
                      .||+++||||++|+++.++|+++|++++++++++|+++  |+|||||||++++||+..
T Consensus         4 ~~m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy~~~   61 (281)
T d1f89a_           4 KILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD   61 (281)
T ss_dssp             SSBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHH
T ss_pred             hhhccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCCchh
Confidence            46788999999999999999999999999999999654  899999999999999864

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=99.40  E-value=1.7e-13  Score=101.12  Aligned_cols=53  Identities=19%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             CcceEEEeccCCCC--CCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCCCCC
Q 034056           24 STVRATVVQASTIF--NDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYPRGT   76 (105)
Q Consensus        24 ~~~rIA~vQ~~~~~--~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~~~~   76 (105)
                      ++||||++|+.+..  .++++|++++.+++++|+++|+|||||||++++||+...
T Consensus         2 ~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l~Gy~~~~   56 (303)
T d1uf5a_           2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRW   56 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGS
T ss_pred             cEEEEEEEccCCcCCCcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCCccc
Confidence            57999999997643  478999999999999999999999999999999997654

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.40  E-value=2.3e-13  Score=98.97  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=47.0

Q ss_pred             cccCcceEEEeccCCCCCCHHHHHHHHHHHHHHHhhCCceEEEcCCCCCCCCC
Q 034056           21 SSASTVRATVVQASTIFNDTPATLDKAERLLAEASGYGSQVVVFPEAFIGGYP   73 (105)
Q Consensus        21 ~~~~~~rIA~vQ~~~~~~d~~~Nl~~i~~~i~~Aa~~gadLIvfPEl~ltGY~   73 (105)
                      |+.+++|||++|+++. .|+++|++++.+++++|+++|+|||||||+|.++|.
T Consensus         1 m~~~~~rVA~~Q~~~~-~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~~   52 (271)
T d1emsa2           1 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGL   52 (271)
T ss_dssp             CCCSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCS
T ss_pred             CCCCCeEEEEEeCCCC-CCHHHHHHHHHHHHHHHHHCcCeEEECCccccccCC
Confidence            5677899999999987 799999999999999999999999999999865554