Citrus Sinensis ID: 034089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV
Secondary Structure (PSIPRED)
ccccccccccccEEccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccEEEEHHccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccc
Coil and Loop (DISEMBL)
masitaclpspllvqgrqklslfitlpklplsplnekQNCLAIVAKasgessesstsLTVFKSVQNvwdnssedrlglIGLGFAGIVALWASVNLITVSATSYV
Flexible Loop (DISEMBL)
masitaclpspllvqGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKAsgessesstslTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV
Low Complexity Region (SEG)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIvakasgessesstsltvfksVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV
Disordered region (IsUnstruct)
*****ACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVA*************TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVS*****
Disordered Region (DISOPRED)
**************************************************************SVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSY*
Disordered Region (DISEMBL)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAK************TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV
Disordered Region (DISPRO)
*ASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASG******TSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
224070909	146	predicted protein [Populus trichocarpa]	0.894	0.636	0.608	1e-23
21554231	156	unknown [Arabidopsis thaliana]	0.923	0.615	0.594	9e-22
18403896	156	uncharacterized protein [Arabidopsis tha	0.923	0.615	0.594	1e-21
224054368	146	predicted protein [Populus trichocarpa]	0.903	0.643	0.663	1e-20
118488080	146	unknown [Populus trichocarpa]	0.913	0.650	0.628	9e-20
79319729	155	uncharacterized protein [Arabidopsis tha	0.913	0.612	0.584	9e-20
388497330	178	unknown [Lotus japonicus]	0.903	0.528	0.649	4e-18
297852972	158	hypothetical protein ARALYDRAFT_892226 [	0.913	0.601	0.550	1e-16
255549936	146	Thylakoid membrane phosphoprotein 14 kDa	0.903	0.643	0.602	2e-15
388496712	146	unknown [Medicago truncatula]	0.894	0.636	0.618	4e-14

>gi|224070909|ref|XP_002303292.1| predicted protein [Populus trichocarpa] gi|222840724|gb|EEE78271.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 76/97 (78%), Gaps = 4/97 (4%)

Query: 1  MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
          MASITA LPSP LLV G++ LS   TL  LPLSP+ ++QNC+++V +A+GESSESS  L 
Sbjct: 1  MASITASLPSPPLLVHGKRTLS--STLQTLPLSPIKDRQNCVSVVVRATGESSESSAPLG 58

Query: 60 VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLI 96
          + KSV+N+WD+ SEDRL L+GLGFA +VA+W S  LI
Sbjct: 59 IVKSVKNIWDD-SEDRLALVGLGFAALVAIWTSAKLI 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554231|gb|AAM63306.1| unknown [Arabidopsis thaliana]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%), Gaps = 10/106 (9%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
           S+SST L V  ++QNVWD S EDRLGLIGLGFAGIVALWAS+NLIT
Sbjct: 61  SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLIT 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403896|ref|NP_564603.1| uncharacterized protein [Arabidopsis thaliana] gi|6850346|gb|AAF29409.1|AC022354_8 unknown protein [Arabidopsis thaliana] gi|15294156|gb|AAK95255.1|AF410269_1 At1g52220/F9I5_10 [Arabidopsis thaliana] gi|20453285|gb|AAM19881.1| At1g52220/F9I5_10 [Arabidopsis thaliana] gi|332194648|gb|AEE32769.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%), Gaps = 10/106 (9%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
           S+SST L V  ++QNVWD S EDRLGLIGLGFAGIVALWAS+NLIT
Sbjct: 61  SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLIT 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054368|ref|XP_002298225.1| predicted protein [Populus trichocarpa] gi|222845483|gb|EEE83030.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 4/98 (4%)

Query: 1  MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
          MASI A LPSP LLV G++    F TL KLPLS + E+QNC+A+V KA+GESSESSTSL+
Sbjct: 1  MASIYANLPSPPLLVHGKR--IPFRTLQKLPLSTIKERQNCVAVVVKATGESSESSTSLS 58

Query: 60 VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
          + KSVQN+WD+ SEDRL L+GLGFA +VA+WAS N+IT
Sbjct: 59 IVKSVQNIWDD-SEDRLPLVGLGFAALVAVWASANVIT 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488080|gb|ABK95860.1| unknown [Populus trichocarpa]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 1  MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV 60
          MASI A LPSP L+   +++  F TL KLPLS + E+QNC+A+  KA+GESSESSTSL++
Sbjct: 1  MASIYANLPSPPLLVHSKRIP-FRTLQKLPLSTIKERQNCVAVAVKATGESSESSTSLSI 59

Query: 61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
           KSVQN+WD+ SEDRL L+GLGFA +VA+WAS N+IT
Sbjct: 60 VKSVQNIWDD-SEDRLPLVGLGFAALVAVWASANVIT 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319729|ref|NP_001031173.1| uncharacterized protein [Arabidopsis thaliana] gi|332194649|gb|AEE32770.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 11/106 (10%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
           S+SST L V  ++QN WD S EDRLGLIGLGFAGIVALWAS+NLIT
Sbjct: 61  SDSSTDLDVVSTIQN-WDKS-EDRLGLIGLGFAGIVALWASLNLIT 104

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497330|gb|AFK36731.1| unknown [Lotus japonicus]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 3/97 (3%)

Query: 1   MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV 60
           MASI A L  PLL+ GR+  +     P  P+S L  ++N +A+V KASGESSESSTSLTV
Sbjct: 34  MASIAASLQPPLLLHGRKSHT--GNFPSFPVSLLPGRRNLIALVVKASGESSESSTSLTV 91

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
            +SVQNVWD   EDRLGLIG GFAGIVALWAS NLIT
Sbjct: 92  LQSVQNVWDK-PEDRLGLIGFGFAGIVALWASANLIT 127

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852972|ref|XP_002894367.1| hypothetical protein ARALYDRAFT_892226 [Arabidopsis lyrata subsp. lyrata] gi|297340209|gb|EFH70626.1| hypothetical protein ARALYDRAFT_892226 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 72/109 (66%), Gaps = 14/109 (12%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPL--NEK---QNCLAIVAKAS 48
           MASI+A LPSPLL+  R       QKLS  +T     +  +  N +   ++ L ++ KAS
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLSFSLTRGTNDIFSVFSNSRFHLKSSLTLMVKAS 60

Query: 49  GESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
            ESSESST L V  S+QNVWD S EDRLGLIGL FA IVALWAS+NLIT
Sbjct: 61  -ESSESSTDLNVVTSIQNVWDKS-EDRLGLIGLSFAAIVALWASLNLIT 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549936|ref|XP_002516019.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis] gi|223544924|gb|EEF46439.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis]

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 73/98 (74%), Gaps = 4/98 (4%)

Query: 1  MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
          MASI A LP+P LLV  R   +LF T  K P+ PL E QN +A+V KA+GESSESS+SL+
Sbjct: 1  MASIVANLPAPALLVPSRT--TLFRTPQKGPVFPLKETQNRVAVVMKAAGESSESSSSLS 58

Query: 60 VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
          + KSV+NVWD SSEDR  + GLGFA IV +WAS NL++
Sbjct: 59 IVKSVKNVWD-SSEDRWAIGGLGFAAIVGVWASANLVS 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496712|gb|AFK36422.1| unknown [Medicago truncatula]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 66/97 (68%), Gaps = 4/97 (4%)

Query: 1  MASITACLPSPLLVQGRQKL-SLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
          MASI A LP PLL+ GR      F       L P   +++ +  V KASGESSESSTSLT
Sbjct: 1  MASIIASLPPPLLLHGRNSFPGNFQNFSVSSLPP--GRRSNVPFVVKASGESSESSTSLT 58

Query: 60 VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLI 96
          VFKSVQNVWD   EDRLGL GLGFA +VALWAS NLI
Sbjct: 59 VFKSVQNVWDK-PEDRLGLFGLGFAAVVALWASTNLI 94

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.923	0.615	0.481	7.7e-16

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 51/106 (48%), Positives = 61/106 (57%)

Query:     1 MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIXXXXXXXX 51
             MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   +++        
Sbjct:     1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query:    52 XXXXXXXXXXXXVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
                         +QNVWD S EDRLGLIGLGFAGIVALWAS+NLIT
Sbjct:    61 SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLIT 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104        84   0.00091  102 3  11 22  0.42    29
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  102 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.41u 0.17s 7.58t   Elapsed:  00:00:00
  Total cpu time:  7.41u 0.17s 7.58t   Elapsed:  00:00:00
  Start:  Fri May 10 14:16:05 2013   End:  Fri May 10 14:16:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	2e-04

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 15/88 (17%)

Query: 24  ITLPKLPLSPLNEKQN-------CLAI----VAKASGES---SESSTSLTVFKSVQNVWD 69
           ++LP LP  P+            C  I    V  A+GE+    E++    + K+VQ  WD
Sbjct: 29  VSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWD 88

Query: 70  NSSEDRLGLIGLGFAGIVALWASVNLIT 97
              ED+  +  L FAG+VALW S  +I+
Sbjct: 89  KV-EDKYAVSSLAFAGVVALWGSAGMIS 115

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PLN02777	167	photosystem I P subunit (PSI-P)	99.91
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	98.0

>PLN02777 photosystem I P subunit (PSI-P)

Probab=99.91  E-value=3.2e-24  Score=162.44  Aligned_cols=95  Identities=31%  Similarity=0.514  Sum_probs=79.9

Q ss_pred             cCCCcccccccccccccccCCC------CCCCCch-----------hhhhhhhHhHhhcCCCCCCc--c-hhhhHHHHHH
Q 034089            7 CLPSPLLVQGRQKLSLFITLPK------LPLSPLN-----------EKQNCLAIVAKASGESSESS--T-SLTVFKSVQN   66 (104)
Q Consensus         7 ~~~~~~L~~~r~p~s~~~~~p~------~p~~~l~-----------~r~~~~~v~a~At~e~~~s~--~-~~eivk~lq~   66 (104)
                      +..++++++++.|++.+...|+      +|.|+++           ||+..|+|++||++|++++.  + .+|++|++||
T Consensus         6 ~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e   85 (167)
T PLN02777          6 ISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQE   85 (167)
T ss_pred             cccccccccCCCCCcCcccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHH
Confidence            4556789999888876665555      4444433           99999999999999987653  2 3599999999


Q ss_pred             HhhhcccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 034089           67 VWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATS  102 (104)
Q Consensus        67 ~Wd~~~EdK~av~~~g~aaivalW~s~~vv~AId~~  102 (104)
                      +||+ +||||+|++|+++|||++|++.++|+|||+.
T Consensus        86 ~Wd~-~EdK~av~~l~~aaiVal~v~~~VL~AId~l  120 (167)
T PLN02777         86 AWDK-VEDKYAVSSLAFAGVVALWGSAGMISAIDRL  120 (167)
T ss_pred             HHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999 8999999999999999999999999999985

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=98.00  E-value=5.8e-06  Score=56.89  Aligned_cols=41  Identities=22%  Similarity=0.379  Sum_probs=37.8

Q ss_pred             HHHHHHHhhhcccchhHHHHHHHHH----HHHHHHhhhhhhhhccc
Q 034089           61 FKSVQNVWDNSSEDRLGLIGLGFAG----IVALWASVNLITVSATS  102 (104)
Q Consensus        61 vk~lq~~Wd~~~EdK~av~~~g~aa----ivalW~s~~vv~AId~~  102 (104)
                      ++++++.|++ .+|||....+++|+    ++++|.+.++++|||+.
T Consensus         1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~i   45 (90)
T PF14159_consen    1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSI   45 (90)
T ss_pred             CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3689999999 89999999999988    99999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00