Citrus Sinensis ID: 034153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MARGSSQSSTSSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHcHHcccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
margssqsstssatsrpgvvaprgsaaatagmrrrrvtgssgngsgsvggagastnmlrfytddapglkisPTVVLLMSLCFIGFVTALHVFGklyrhksan
Flexible Loop (DISEMBL)
margssqsstssatsrpgvvaprgsaaatagmrrrrvtgssgngsgsvggagASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN
Low Complexity Region (SEG)
MARGssqsstssatsRPGVVAPRGSAAATAGMrrrrvtgssgngsgsvggagastnMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN
Disordered region (IsUnstruct)
*******************************************************NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR*****
Disordered Region (DISOPRED)
**********************************************************RFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRH****
Disordered Region (DISEMBL)
************************************************GGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN
Disordered Region (DISPRO)
******************************************************TNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRH****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARGSSQSSTSSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P38389	82	Protein transport protein	no	no	0.725	0.902	0.649	2e-16
Q9HFC7	91	Protein transport protein	yes	no	0.480	0.538	0.510	6e-09
Q9CQS8	96	Protein transport protein	yes	no	0.627	0.666	0.453	6e-09
Q5RB31	96	Protein transport protein	yes	no	0.627	0.666	0.453	7e-09
P60468	96	Protein transport protein	yes	no	0.627	0.666	0.453	7e-09
P60467	96	Protein transport protein	yes	no	0.627	0.666	0.453	7e-09
Q54YR4	61	Protein transport protein	yes	no	0.411	0.688	0.571	3e-08
Q8J2P4	88	Protein transport protein	yes	no	0.656	0.761	0.328	2e-06
P52870	82	Protein transport protein	yes	no	0.607	0.756	0.375	2e-05
O43002	102	Protein transport protein	yes	no	0.411	0.411	0.380	9e-05

>sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 23 RGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCF 82
          RGSAAATA MRRR+ T  +G G  S    GA+ +ML+FYTDDAPGLKISP VVL+MS+ F
Sbjct: 9  RGSAAATASMRRRKPTSGAGGGGAS---GGAAGSMLQFYTDDAPGLKISPNVVLIMSIGF 65

Query: 83 IGFVTALHVFGKLYRHK 99
          I FV  LHV GKLY  K
Sbjct: 66 IAFVAVLHVMGKLYFVK 82

Necessary for protein translocation in the endoplasmic reticulum.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 47 SVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKL 95
          SVG  G+S+ ML+ YTD++ GLK+ P VV+++SL FI  V ALH+  K+
Sbjct: 37 SVGAGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAKV 85

Necessary for protein translocation in the endoplasmic reticulum.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
          R+R   S G  S     +  +  M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWG 91

Query: 94 KLYR 97
          K  R
Sbjct: 92 KYTR 95

Necessary for protein translocation in the endoplasmic reticulum.

Mus musculus (taxid: 10090)

>sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
          R+R   S G  S     +  +  M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWG 91

Query: 94 KLYR 97
          K  R
Sbjct: 92 KYTR 95

Necessary for protein translocation in the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

>sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
          R+R   S G  S     +  +  M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWG 91

Query: 94 KLYR 97
          K  R
Sbjct: 92 KYTR 95

Necessary for protein translocation in the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

>sp|P60467|SC61B_CANFA Protein transport protein Sec61 subunit beta OS=Canis familiaris GN=SEC61B PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 34 RRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
          R+R   S G  S     +  +  M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++G
Sbjct: 32 RQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWG 91

Query: 94 KLYR 97
          K  R
Sbjct: 92 KYTR 95

Necessary for protein translocation in the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

>sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec61b PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 56 NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
          +M++FY++DA GLK+ PT VL MSL FI FV  LH+ GK  R
Sbjct: 19 SMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKYTR 60

Necessary for protein translocation in the endoplasmic reticulum.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 29 TAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTA 88
           A +++ +    +       G  G+S+++L+ YTD+A GL++ P VVL +++ F+  V A
Sbjct: 17 NAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPLVVLFLAVAFVFSVVA 76

Query: 89 LHVFGKL 95
          LHV  K+
Sbjct: 77 LHVVAKV 83

Necessary for protein translocation in the endoplasmic reticulum.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P52870|SC6B1_YEAST Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 34 RRRVTGSSGNGSGSVGGAGASTN--MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHV 91
          ++R  GSS   + S      ++N  +L+ Y+D+A GL++ P VVL +++ FI  V ALHV
Sbjct: 14 QKRKQGSSQKVAASAPKKNTNSNNSILKIYSDEATGLRVDPLVVLFLAVGFIFSVVALHV 73

Query: 92 FGKL 95
            K+
Sbjct: 74 ISKV 77

Part of the Sec61 complex, which is the major component of a channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). The functional states of the translocon complex include co- and post-translational ER import, cotranslational membrane protein integration and retrograde transport of misfolded proteins out of the ER. In the cotranslational pathway, ribosomes synthesizing presecretory proteins are targeted to the translocon by the cytosolic signal recognition particle (SRP) and its ER-localized receptor. The association of the Sec61 complex with the ribosome is mediated by the 28S rRNA of the large ribosomal subunit. SRP-independent post-translational translocation requires the association of additional factors, such as the Sec62/63 complex and KAR2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRH 98
          +L+ YTD+A G K+ P VV+++S+ FI  V  LH+  ++ + 
Sbjct: 57 LLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILKK 98

Necessary for protein translocation in the endoplasmic reticulum.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
297746234	699	unnamed protein product [Vitis vinifera]	0.980	0.143	0.766	3e-31
255570845	106	Protein transport protein Sec61 subunit	0.833	0.801	0.818	1e-30
225435271	107	PREDICTED: protein transport protein Sec	0.980	0.934	0.766	2e-30
356539126	107	PREDICTED: protein transport protein Sec	0.990	0.943	0.728	3e-27
116790817	108	unknown [Picea sitchensis] gi|116791539|	0.980	0.925	0.714	4e-27
449463643	109	PREDICTED: protein transport protein Sec	0.843	0.788	0.75	1e-26
15239337	109	protein transport protein SEC61 subunit	0.843	0.788	0.781	1e-26
357441565	114	Protein transport protein Sec61 beta sub	0.862	0.771	0.730	2e-26
357453827	107	Protein transport protein Sec61 beta sub	0.794	0.757	0.797	1e-25
225449090	108	PREDICTED: protein transport protein Sec	0.980	0.925	0.730	4e-25

>gi|297746234|emb|CBI16290.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 88/103 (85%), Gaps = 3/103 (2%)

Query: 1   MARGSSQSSTSS-ATSRPGVV--APRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNM 57
           MARGSSQS  S+ ATSRPG V  APRG+AAATAGMRRRRV G SG  S   GG G+ +NM
Sbjct: 593 MARGSSQSQASTTATSRPGPVGMAPRGTAAATAGMRRRRVGGGSGGSSSGYGGGGSGSNM 652

Query: 58  LRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKS 100
           LRFYTDDAPGLKI+PTVVL+MSLCFIGFVTALHVFGK+YR+K+
Sbjct: 653 LRFYTDDAPGLKITPTVVLVMSLCFIGFVTALHVFGKIYRYKA 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570845|ref|XP_002526375.1| Protein transport protein Sec61 subunit beta, putative [Ricinus communis] gi|223534334|gb|EEF36046.1| Protein transport protein Sec61 subunit beta, putative [Ricinus communis]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 76/88 (86%), Gaps = 3/88 (3%)

Query: 16  RPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVG--GAGASTNMLRFYTDDAPGLKISPT 73
           RPGV APRGSAAATAGMRRRR+ GSS +G+ S    G G STNMLRFYTDDAPGLKISPT
Sbjct: 17  RPGVAAPRGSAAATAGMRRRRL-GSSASGATSTAASGIGNSTNMLRFYTDDAPGLKISPT 75

Query: 74  VVLLMSLCFIGFVTALHVFGKLYRHKSA 101
           VVL+MSLCFIGFVTALHVFGKLYR K A
Sbjct: 76  VVLVMSLCFIGFVTALHVFGKLYRSKVA 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435271|ref|XP_002285035.1| PREDICTED: protein transport protein Sec61 subunit beta [Vitis vinifera]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 88/103 (85%), Gaps = 3/103 (2%)

Query: 1   MARGSSQSSTSS-ATSRPGVV--APRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNM 57
           MARGSSQS  S+ ATSRPG V  APRG+AAATAGMRRRRV G SG  S   GG G+ +NM
Sbjct: 1   MARGSSQSQASTTATSRPGPVGMAPRGTAAATAGMRRRRVGGGSGGSSSGYGGGGSGSNM 60

Query: 58  LRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKS 100
           LRFYTDDAPGLKI+PTVVL+MSLCFIGFVTALHVFGK+YR+K+
Sbjct: 61  LRFYTDDAPGLKITPTVVLVMSLCFIGFVTALHVFGKIYRYKA 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539126|ref|XP_003538051.1| PREDICTED: protein transport protein Sec61 subunit beta-like [Glycine max]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 88/103 (85%), Gaps = 2/103 (1%)

Query: 1   MARGSSQSST--SSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNML 58
           MARG+SQS +  S AT+RPGV+APRG+AAATAGMRRRR+ G + + S S G     +NML
Sbjct: 1   MARGASQSQSTASHATTRPGVMAPRGTAAATAGMRRRRLGGGTSSASVSGGSGAGGSNML 60

Query: 59  RFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSA 101
           RFYTDDAPGLKISPTVVL+MSLCFIGFVTALHVFGKLYR++S+
Sbjct: 61  RFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYRSS 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790817|gb|ABK25751.1| unknown [Picea sitchensis] gi|116791539|gb|ABK26018.1| unknown [Picea sitchensis] gi|224286463|gb|ACN40938.1| unknown [Picea sitchensis]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 81/105 (77%), Gaps = 5/105 (4%)

Query: 1   MARGSSQSSTSSATSR--PGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGAST--- 55
           MARGSSQS  +S  SR  P   APRGSAAATAG+RRRR T  SG G    GG G S    
Sbjct: 1   MARGSSQSQAASVVSRAGPTGAAPRGSAAATAGLRRRRTTSGSGGGGSGGGGFGGSGGGS 60

Query: 56  NMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKS 100
           NMLRFYTDDAPGLKI+PTVVL+MSLCFIGFVTALHV GKLYR++S
Sbjct: 61  NMLRFYTDDAPGLKITPTVVLVMSLCFIGFVTALHVIGKLYRYRS 105

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463643|ref|XP_004149541.1| PREDICTED: protein transport protein Sec61 subunit beta-like [Cucumis sativus] gi|449533016|ref|XP_004173473.1| PREDICTED: protein transport protein Sec61 subunit beta-like [Cucumis sativus]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 73/88 (82%), Gaps = 2/88 (2%)

Query: 16  RPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSV--GGAGASTNMLRFYTDDAPGLKISPT 73
           RPGVVAPRGSAAATAG+RRRR   +S + S  +  GG+    NMLRFYTDDAPGLKISPT
Sbjct: 19  RPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGGNMLRFYTDDAPGLKISPT 78

Query: 74  VVLLMSLCFIGFVTALHVFGKLYRHKSA 101
           VVL+MSLCFIGFVT LHVFGKLYR +SA
Sbjct: 79  VVLVMSLCFIGFVTGLHVFGKLYRARSA 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239337|ref|NP_200854.1| protein transport protein SEC61 subunit beta [Arabidopsis thaliana] gi|9757748|dbj|BAB08229.1| unnamed protein product [Arabidopsis thaliana] gi|26451290|dbj|BAC42746.1| protein transport protein subunit - like [Arabidopsis thaliana] gi|28973101|gb|AAO63875.1| putative protein transport protein subunit [Arabidopsis thaliana] gi|332009950|gb|AED97333.1| protein transport protein SEC61 subunit beta [Arabidopsis thaliana]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 15  SRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGAST-NMLRFYTDDAPGLKISPT 73
           +RPG+ APRGSAAATAGMRRRR+ G  G  SG   G G+ + NMLRFYTDDAPGLKISPT
Sbjct: 19  ARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFYTDDAPGLKISPT 78

Query: 74  VVLLMSLCFIGFVTALHVFGKLYRHKS 100
           VVL+MSLCFIGFVTALHVFGKLY HKS
Sbjct: 79  VVLIMSLCFIGFVTALHVFGKLYLHKS 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441565|ref|XP_003591060.1| Protein transport protein Sec61 beta subunit [Medicago truncatula] gi|355480108|gb|AES61311.1| Protein transport protein Sec61 beta subunit [Medicago truncatula]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 76/89 (85%), Gaps = 1/89 (1%)

Query: 13  ATSRPGVVAPRGSAAATAGMRRRRVTG-SSGNGSGSVGGAGASTNMLRFYTDDAPGLKIS 71
           AT+RPGV+APRGSAAATAGMRRRR TG ++ + + + G +    NMLRFYTDDAPGLKIS
Sbjct: 16  ATTRPGVMAPRGSAAATAGMRRRRPTGGNTTSSTSAAGSSSGGNNMLRFYTDDAPGLKIS 75

Query: 72  PTVVLLMSLCFIGFVTALHVFGKLYRHKS 100
           PTVVL+MSL FIGFVT LHVFGKLYR++S
Sbjct: 76  PTVVLVMSLGFIGFVTMLHVFGKLYRYQS 104

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453827|ref|XP_003597194.1| Protein transport protein Sec61 beta subunit [Medicago truncatula] gi|87241202|gb|ABD33060.1| Sec61beta [Medicago truncatula] gi|355486242|gb|AES67445.1| Protein transport protein Sec61 beta subunit [Medicago truncatula]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 74/84 (88%), Gaps = 3/84 (3%)

Query: 18  GVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGAST-NMLRFYTDDAPGLKISPTVVL 76
           G+ APRGSAAATAGMRRRR+T  SGN + SVGG  +   NMLRFYTDDAPGLKISPTVVL
Sbjct: 22  GLAAPRGSAAATAGMRRRRLT--SGNSTASVGGGSSGGSNMLRFYTDDAPGLKISPTVVL 79

Query: 77  LMSLCFIGFVTALHVFGKLYRHKS 100
           +MSLCFIGFVTALHVFGKLYR+K+
Sbjct: 80  VMSLCFIGFVTALHVFGKLYRYKA 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449090|ref|XP_002276029.1| PREDICTED: protein transport protein Sec61 subunit beta [Vitis vinifera] gi|147800942|emb|CAN75561.1| hypothetical protein VITISV_032577 [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 83/104 (79%), Gaps = 4/104 (3%)

Query: 1   MARGSSQSSTSS-ATSRPGVV--APRGSAAATAGMRRRRVTGSSGNGSGSVGGAGAST-N 56
           M RGSSQS  SS  TSRP  V  APRGSAAATAGMRRRR+   S  G     G+G+S  N
Sbjct: 1   MVRGSSQSQASSSVTSRPSTVGMAPRGSAAATAGMRRRRLGTGSAGGGSGGFGSGSSGSN 60

Query: 57  MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKS 100
           MLRFYTDDAPGLKI+PTVVL+MSLCFIGFVTALHVFGK+YRH+S
Sbjct: 61  MLRFYTDDAPGLKITPTVVLVMSLCFIGFVTALHVFGKIYRHRS 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2175108	109	AT5G60460 "AT5G60460" [Arabido	1.0	0.935	0.570	5.3e-24
TAIR|locus:2055567	82	SEC61 BETA "AT2G45070" [Arabid	0.745	0.926	0.537	1e-13
TAIR|locus:2103376	81	AT3G60540 "AT3G60540" [Arabido	0.725	0.913	0.543	1.6e-13
DICTYBASE|DDB_G0278117	61	sec61b "protein transport prot	0.401	0.672	0.585	2e-08
FB|FBgn0010638	100	Sec61beta "Sec61beta" [Drosoph	0.401	0.41	0.585	3.3e-08
UNIPROTKB|F1NWX7	96	SEC61B "Uncharacterized protei	0.401	0.427	0.585	5.3e-08
UNIPROTKB|Q2NKT5	96	SEC61B "Sec61 beta subunit" [B	0.401	0.427	0.585	5.3e-08
UNIPROTKB|P60467	96	SEC61B "Protein transport prot	0.401	0.427	0.585	5.3e-08
UNIPROTKB|P60468	96	SEC61B "Protein transport prot	0.401	0.427	0.585	5.3e-08
UNIPROTKB|F2Z5P0	96	SEC61B "Uncharacterized protei	0.401	0.427	0.585	5.3e-08

TAIR|locus:2175108 AT5G60460 "AT5G60460" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 61/107 (57%), Positives = 64/107 (59%)

Query:     1 MARGXX----XXXXXXXXXRPGVVAPRGSAAATAGMXXXXXXXXXXXXXXXXXXXXXXXX 56
             MARG               RPG+ APRGSAAATAGM                        
Sbjct:     1 MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSS 60

Query:    57 -MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHKSAN 102
              MLRFYTDDAPGLKISPTVVL+MSLCFIGFVTALHVFGKLY HKS +
Sbjct:    61 NMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2055567 SEC61 BETA "AT2G45070" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 43/80 (53%), Positives = 46/80 (57%)

Query:    18 GVVAP-RGSAAATAGMXXXXXXXXXXXXXXXXXXXXXXXXMLRFYTDDAPGLKISPTVVL 76
             G  AP RGSAAATA M                        ML+FYTDDAPGLKISP VVL
Sbjct:     3 GSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGS---MLQFYTDDAPGLKISPNVVL 59

Query:    77 LMSLCFIGFVTALHVFGKLY 96
             +MS+ FI FV  LHV GKLY
Sbjct:    60 IMSIGFIAFVAVLHVMGKLY 79

GO:0008565 "protein transporter activity" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2103376 AT3G60540 "AT3G60540" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 44/81 (54%), Positives = 47/81 (58%)

Query:    21 AP-RGSAAATAGMXXXXXXXXXXXXXXXXXXXXXXXXMLRFYTDDAPGLKISPTVVLLMS 79
             AP RGSAAATA M                        ML+FYTDDAPGLKISP VVL+MS
Sbjct:     6 APQRGSAAATASMRRRKPAGGSSSAGGGAGT------MLQFYTDDAPGLKISPNVVLIMS 59

Query:    80 LCFIGFVTALHVFGKLYRHKS 100
             + FI FV  LHV GKLY  KS
Sbjct:    60 IGFIAFVAVLHVMGKLYFVKS 80

GO:0008565 "protein transporter activity" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

DICTYBASE|DDB_G0278117 sec61b "protein transport protein SEC61 beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M++FY++DA GLK+ PT VL MSL FI FV  LH+ GK  R
Sbjct:    20 MMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKYTR 60

GO:0008565 "protein transporter activity" evidence=IC

GO:0006613 "cotranslational protein targeting to membrane" evidence=ISS

GO:0005784 "Sec61 translocon complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0010638 Sec61beta "Sec61beta" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M RFYTDD+PG+K+ P  VL+MSL FI  V  LH++GK  R
Sbjct:    59 MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNR 99

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS

GO:0005784 "Sec61 translocon complex" evidence=ISS;NAS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010507 "negative regulation of autophagy" evidence=IMP

UNIPROTKB|F1NWX7 SEC61B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct:    55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0048408 "epidermal growth factor binding" evidence=IEA

UNIPROTKB|Q2NKT5 SEC61B "Sec61 beta subunit" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct:    55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IDA

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

UNIPROTKB|P60467 SEC61B "Protein transport protein Sec61 subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct:    55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P60468 SEC61B "Protein transport protein Sec61 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct:    55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

GO:0048408 "epidermal growth factor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=NAS

GO:0000060 "protein import into nucleus, translocation" evidence=IMP

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5P0 SEC61B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query:    57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
             M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct:    55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	102
pfam03911	41	pfam03911, Sec61_beta, Sec61beta family	2e-16
PRK01253	54	PRK01253, PRK01253, preprotein translocase subunit	2e-04

>gnl|CDD|202805 pfam03911, Sec61_beta, Sec61beta family

 Score = 66.1 bits (162), Expect = 2e-16
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 53 ASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
          +S  +LRFY ++APG+K+ P VVL++SL FI  V ALH+ G
Sbjct: 1  SSAGLLRFYEEEAPGIKVDPKVVLVLSLGFIASVIALHILG 41

This family consists of homologues of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane. Length = 41

>gnl|CDD|179263 PRK01253, PRK01253, preprotein translocase subunit SecG; Reviewed

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 40 SSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG 93
              G G +  AG    ++R++ ++   +KI P  V+ + L    FV  L+   
Sbjct: 3  KKKEGGGLMSSAG----LIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALF 52

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG3457	88	consensus Sec61 protein translocation complex, bet	99.96
PF03911	41	Sec61_beta: Sec61beta family; InterPro: IPR005609	99.79
PRK01253	54	preprotein translocase subunit SecG; Reviewed	99.79
COG4023	57	SBH1 Preprotein translocase subunit Sec61beta [Int	99.08

>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3e-30  Score=177.62  Aligned_cols=77  Identities=52%  Similarity=0.821  Sum_probs=66.1

Q ss_pred             CCCccccccceeeecCC---CCCCCCCCCCCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhccccc
Q 034153           23 RGSAAATAGMRRRRVTG---SSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYRHK   99 (102)
Q Consensus        23 r~~aaa~~~~rrr~~~~---~~~~~~~~~~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~~~~   99 (102)
                      ++++++++++|||+...   ++..++++.|.++++.+|||||+||++||||||++||+|||+||++|++||||+||++.+
T Consensus         8 Pg~a~~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~~LHi~gK~~~~~   87 (88)
T KOG3457|consen    8 PGGAAATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVFALHIWGKLTRSK   87 (88)
T ss_pred             CCchhhHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHHHHHHHHHHhhcc
Confidence            38888899999998762   223333444667899999999999999999999999999999999999999999999876

>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG

Probab=99.79  E-value=1.1e-20  Score=113.75  Aligned_cols=41  Identities=49%  Similarity=1.005  Sum_probs=25.3

Q ss_pred             chhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhh
Q 034153           53 ASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFG   93 (102)
Q Consensus        53 SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~   93 (102)
                      |++||+||||||++|+||+|++||+++++||++|++||+++
T Consensus         1 Ssagl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~Lhi~~   41 (41)
T PF03911_consen    1 SSAGLLRYYEEDAPGIKIDPKTVLIISIAFIAIVILLHIFA   41 (41)
T ss_dssp             ------------S-SS-BSCCHHHHHHHHHHHHHHHHT-SS
T ss_pred             CCCcceeeeeccCCcceeCCeehHHHHHHHHHHHHHHhhhC
Confidence            68999999999999999999999999999999999999985

This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....

>PRK01253 preprotein translocase subunit SecG; Reviewed

Probab=99.79  E-value=7.6e-20  Score=116.13  Aligned_cols=46  Identities=26%  Similarity=0.533  Sum_probs=43.5

Q ss_pred             CCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhh
Q 034153           49 GGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGK   94 (102)
Q Consensus        49 ~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~K   94 (102)
                      +..+|++||+||||||.+||||+|++||+++++||++|++||++..
T Consensus         8 ~g~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~~   53 (54)
T PRK01253          8 GGLMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALFP   53 (54)
T ss_pred             CCCcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhcC
Confidence            4589999999999999999999999999999999999999999865

>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]

Probab=99.08  E-value=3.7e-11  Score=77.53  Aligned_cols=41  Identities=24%  Similarity=0.576  Sum_probs=38.2

Q ss_pred             hhhhhhhhccCCCc-eeecCeEEehhHHHHHHHHHHHHhhhh
Q 034153           54 STNMLRFYTDDAPG-LKISPTVVLLMSLCFIGFVTALHVFGK   94 (102)
Q Consensus        54 sagLlRfYtdd~~g-iKV~P~~VLi~Sl~FI~~VilLHi~~K   94 (102)
                      ++||+||||||+.+ |||||..|+.+++.+++.|++.|++.+
T Consensus        15 ~AGLi~f~eEee~~~ikidP~~vV~~~~av~~lvi~A~~f~p   56 (57)
T COG4023          15 AAGLIRFFEEEEIKGIKIDPRLVVYAGIAVAILVIAAHIFAP   56 (57)
T ss_pred             ccceeeeecccccCCcccCchhhHHHHHHHHHHHHHHHHhcC
Confidence            89999999977776 999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
2wwb_C	96	Cryo-Em Structure Of The Mammalian Sec61 Complex Bo		8e-09

>pdb|2WWB|C Chain C, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 96

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 57 MLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
          M RFYT+D+PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct: 55 MWRFYTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	5e-15
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	1e-14
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-06

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 96

 Score = 63.7 bits (154), Expect = 5e-15
 Identities = 33/93 (35%), Positives = 46/93 (49%)

Query: 5  SSQSSTSSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDD 64
              S ++  S     +   +A A     R+R   S G  S     +  +  M RFYT+D
Sbjct: 3  GPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62

Query: 65 APGLKISPTVVLLMSLCFIGFVTALHVFGKLYR 97
          +PGLK+ P  VL+MSL FI  V  LH++GK  R
Sbjct: 63 SPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C Length = 87

 Score = 62.5 bits (151), Expect = 1e-14
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 9  STSSATSRPGVVAPRGSAAATAGMRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGL 68
          + S       ++  R  A +     + +    +   +   G  G+S+++L+ YTD+A G 
Sbjct: 2  AASVPPGGQRILQKRRQAQS----IKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGF 57

Query: 69 KISPTVVLLMSLCFIGFVTALHVFGKL 95
          ++   VVL +S+ FI  V ALH+  K 
Sbjct: 58 RVDSLVVLFLSVGFIFSVIALHLLTKF 84

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 3e-06
 Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 55 TNMLRFYTDD-APGLKISPTV 74
             L+ Y DD AP L I  T+
Sbjct: 26 QASLKLYADDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	99.96
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	99.91
1rh5_C	53	Secbeta; protein translocation, SECY, membrane pro	99.72

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=99.96  E-value=7.1e-32  Score=187.28  Aligned_cols=88  Identities=35%  Similarity=0.591  Sum_probs=34.9

Q ss_pred             ccccccCCCCCCCCCCCcccc-cc--ceeeecCCCCCCCCCCCCCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHH
Q 034153            9 STSSATSRPGVVAPRGSAAAT-AG--MRRRRVTGSSGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGF   85 (102)
Q Consensus         9 ~~s~~~~~~~~~~pr~~aaa~-~~--~rrr~~~~~~~~~~~~~~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~   85 (102)
                      |++|++.+. +.+|++.++++ ++  +||||.+++++++ ++++.+++++|||||||||++||||+|++||+|+|+||++
T Consensus         6 ~s~t~vg~~-~~~p~~~a~~~~~g~~~r~Rr~~~~~~~~-~~~~~~~SsaGllRfY~dds~GlKV~P~~VLv~sl~Fi~~   83 (96)
T 2wwb_C            6 PSGTNVGSS-GRSPSKAVAARAAGSTVRQRKNASCGTRS-AGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIAS   83 (96)
T ss_dssp             ---------------------------------------------------------CCSCCCCCSSCSHHHHHHHHHHH
T ss_pred             cCccccccC-CCCCCcccccccCCcceEecccCCCccCC-CCCCCCCCCcceeeeeecCCCceEECCEEehhhHHHHHHH
Confidence            666766654 66888877644 55  9999977665433 3357788999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcccc
Q 034153           86 VTALHVFGKLYRH   98 (102)
Q Consensus        86 VilLHi~~Kl~~~   98 (102)
                      |++||||+||+|+
T Consensus        84 Vi~Lhi~~K~~r~   96 (96)
T 2wwb_C           84 VFMLHIWGKYTRS   96 (96)
T ss_dssp             HHHHSCSSSCCCC
T ss_pred             HHHHHHhhhhccC
Confidence            9999999999874

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C

Probab=99.91  E-value=1.7e-26  Score=157.98  Aligned_cols=66  Identities=33%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             cceeeecCCC-------CCCCCCCCCCCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhhhhcc
Q 034153           31 GMRRRRVTGS-------SGNGSGSVGGAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVFGKLY   96 (102)
Q Consensus        31 ~~rrr~~~~~-------~~~~~~~~~~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~~Kl~   96 (102)
                      .+|||.....       ...++++++.+++++|||||||||++||||+|++||+|+|+||++|++||||+||+
T Consensus        13 ~~rrr~~~~~~~~~~~~~~~s~~~~~~ggss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~gK~~   85 (87)
T 2ww9_C           13 LQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT   85 (87)
T ss_dssp             ---------------------------------------------CCCHHHHHHHHHHHHHHHHHC-------
T ss_pred             hhhcccchhhhhhhhccCCCCCCCCCCCCCchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHhhhhc
Confidence            3666654432       22333345678899999999999999999999999999999999999999999997

>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C

Probab=99.72  E-value=5.1e-19  Score=111.16  Aligned_cols=43  Identities=16%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             CCCchhhhhhhhccCCCceeecCeEEehhHHHHHHHHHHHHhh
Q 034153           50 GAGASTNMLRFYTDDAPGLKISPTVVLLMSLCFIGFVTALHVF   92 (102)
Q Consensus        50 ~~~SsagLlRfYtdd~~giKV~P~~VLi~Sl~FI~~VilLHi~   92 (102)
                      ..+|++||+||||||++||||+|++||+++++||++|++||+.
T Consensus         8 ~~~ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L~~~   50 (53)
T 1rh5_C            8 GLATSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAILTYG   50 (53)
T ss_dssp             -------------CCCCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcccccchhhhhccCCccccCCeehhhhHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1rh5c_	32	Sec-beta subunit {Archaeon Methanococcus jannaschi	89.17

>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Sec-beta subunit
family: Sec-beta subunit
domain: Sec-beta subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.17  E-value=0.048  Score=29.26  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             CCceeecCeEEehhHHHHHHHHHHHH
Q 034153           65 APGLKISPTVVLLMSLCFIGFVTALH   90 (102)
Q Consensus        65 ~~giKV~P~~VLi~Sl~FI~~VilLH   90 (102)
                      -+.|++.|.+|+...++|+++..+|.
T Consensus         3 fskirvkpehvigvtvafviieailt   28 (32)
T d1rh5c_           3 FSKIRVKPEHVIGVTVAFVIIEAILT   28 (32)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeccceEEEEEEehhhHHHHHh
Confidence            46899999999999999998887775