Citrus Sinensis ID: 034183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER
Secondary Structure (PSIPRED)
ccEEEcccEEEEEccccccEEEEEEccccccccEEEEEEcccEEEEEEEEcEEEEEcHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccEEEEEcccccccHEcEEHcccccEEEEEEEccccEEEEEEEccEEEEEEcHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhfsfgagLSAAAGIVGRAAEVDVRAGVGGYAACYtyscskgafvgcsLEGSIVAtraeensrfygnpsiCASAIllgslprppaAAILYHALSDLFEKVER
Flexible Loop (DISEMBL)
MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER
Low Complexity Region (SEG)
MHfsfgaglsaaagIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER
Disordered region (IsUnstruct)
****FGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLF*****
Disordered Region (DISOPRED)
MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFE****
Disordered Region (DISEMBL)
MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER
Disordered Region (DISPRO)
MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q6DFH5	335	SH3 domain-containing YSC	N/A	no	0.960	0.292	0.42	9e-13
Q9URW6	430	SH3 domain-containing pro	yes	no	0.970	0.230	0.4	9e-11
Q96HL8	342	SH3 domain-containing YSC	no	no	0.950	0.283	0.41	2e-10
Q5RAQ2	342	SH3 domain-containing YSC	yes	no	0.950	0.283	0.41	2e-10
Q3SZ01	341	SH3 domain-containing YSC	yes	no	0.950	0.284	0.4	2e-10
O08641	340	SH3 domain-containing YSC	yes	no	0.950	0.285	0.39	7e-10
B0BNA1	340	SH3 domain-containing YSC	yes	no	0.950	0.285	0.39	8e-10
P32793	468	Protein YSC84 OS=Saccharo	yes	no	0.872	0.190	0.422	9e-10
P43603	459	LAS seventeen-binding pro	no	no	0.872	0.193	0.433	2e-07
A7A261	459	LAS seventeen-binding pro	N/A	no	0.872	0.193	0.433	2e-07

>sp|Q6DFH5|SH3Y1_XENLA SH3 domain-containing YSC84-like protein 1 OS=Xenopus laevis GN=sh3yl1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           + + G   + A G +GR  E DV   +   AA YTY  S+G F G SLEGS +  R E N
Sbjct: 119 NLTLGGNFTVAVGPLGRNLEGDV--AIRSSAAVYTYCKSRGLFAGISLEGSGLIERKETN 176

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            +FYG   I A  IL G + RP  A  LY  L    EK E
Sbjct: 177 RKFYGQDDIRAYEILFGEIFRPTEAKELYEILDSFTEKYE 216

Xenopus laevis (taxid: 8355)

>sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 3   FSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENS 62
            + G  LS AAG +GR AE    A VGG A  ++YS +KG F G SLEGS++  R + N 
Sbjct: 122 ITLGGNLSIAAGPLGRNAEAGGGASVGGMAPMFSYSKTKGLFAGVSLEGSVLVERRDANR 181

Query: 63  RFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER 102
             Y    I A  +L G + +P AA  LY  L+     + R
Sbjct: 182 SLYRG-DITAKRLLSGQVAQPAAADPLYRVLNSKIFNLNR 220

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96HL8|SH3Y1_HUMAN SH3 domain-containing YSC84-like protein 1 OS=Homo sapiens GN=SH3YL1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           + + G  L+ A G +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N
Sbjct: 119 NLTLGGNLTVAVGPLGRNLEGNV--ALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETN 176

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            +FY    I A  IL G  PRP  A  LY  L    EK E
Sbjct: 177 RKFYCQ-DIRAYDILFGDTPRPAQAEDLYEILDSFTEKYE 215

Homo sapiens (taxid: 9606)

>sp|Q5RAQ2|SH3Y1_PONAB SH3 domain-containing YSC84-like protein 1 OS=Pongo abelii GN=SH3YL1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           + + G  L+ A G +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N
Sbjct: 119 NLTLGGNLTVAVGPLGRNLEGNV--ALRNSAAVFTYCKSRGLFAGVSLEGSCLIERKETN 176

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            +FY    I A  IL G  PRP  A  LY  L    EK E
Sbjct: 177 RKFYCQ-DIRAYDILFGDTPRPAQAEDLYEILDSFTEKYE 215

Pongo abelii (taxid: 9601)

>sp|Q3SZ01|SH3Y1_BOVIN SH3 domain-containing YSC84-like protein 1 OS=Bos taurus GN=SH3YL1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           + + G  L+ A G +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N
Sbjct: 119 NLTLGGNLTVAVGPLGRNLEGNV--SLRSSAAVFTYCKSRGLFAGISLEGSCLIERKETN 176

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            +FY    I A  IL G + RP  A  LY  L    EK E
Sbjct: 177 RKFYCQ-DIRAYDILFGDITRPAQAEDLYEVLDSFTEKYE 215

Bos taurus (taxid: 9913)

>sp|O08641|SH3Y1_MOUSE SH3 domain-containing YSC84-like protein 1 OS=Mus musculus GN=Sh3yl1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           + + G   + A G +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N
Sbjct: 119 NLTLGGNFTVAVGPLGRNLEGNV--SLRSSAAVFTYCKSRGLFAGISLEGSCLIERKETN 176

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            +FY    I A  IL G +P+P  A  LY  L+   EK E
Sbjct: 177 RKFYCQ-DIRAYDILFGDVPQPAQAEDLYEILNSFTEKYE 215

Mus musculus (taxid: 10090)

>sp|B0BNA1|SH3Y1_RAT SH3 domain-containing YSC84-like protein 1 OS=Rattus norvegicus GN=Sh3yl1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           + + G   + A G +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N
Sbjct: 119 NLTLGGNFTVAVGPLGRNLEGNV--SLRSSAAVFTYCKSRGLFAGISLEGSCLIERKETN 176

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            +FY    I A  IL G +P+P  A  LY  L+   EK E
Sbjct: 177 RKFYCQ-DIRAYDILFGDVPQPAQAEDLYEILNSFTEKYE 215

Rattus norvegicus (taxid: 10116)

>sp|P32793|YSC84_YEAST Protein YSC84 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSC84 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 4   SFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSR 63
           + G  +S +AG +GR+AE    A  GG +A + YS SKG F G S+EGS +  R E N +
Sbjct: 123 TLGGNVSVSAGPLGRSAEAAASASTGGVSAVFAYSKSKGLFAGVSVEGSAILERREANRK 182

Query: 64  FYGNPSICASAILLGSLPRPPAAAILYHAL 93
           FYG+ +  +  IL G +  PPAA  L   L
Sbjct: 183 FYGD-NCTSKMILSGRVKVPPAADPLLRIL 211

Essential for the organization of the actin cytoskeleton, fluid phase endocytosis and vesicle trafficking, together with LSB5.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P43603|LSB3_YEAST LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSB3 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 4   SFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSR 63
           + G  +S +AG +GR+AE    A  GG AA + YS SKG F G S+EGS +  R E N +
Sbjct: 123 TLGGNVSVSAGPLGRSAEAAASASAGGVAAVFAYSKSKGLFAGVSVEGSAIIERREANRK 182

Query: 64  FYGNPSICASAILLGSLPRPPAAAILYHAL 93
           FYG+ +  A  IL G +  PPA   L+  L
Sbjct: 183 FYGD-NCTAKMILSGRIRPPPAVDPLFRVL 211

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A7A261|LSB3_YEAS7 LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=LSB3 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 4   SFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSR 63
           + G  +S +AG +GR+AE    A  GG AA + YS SKG F G S+EGS +  R E N +
Sbjct: 123 TLGGNVSVSAGPLGRSAEAAASASAGGVAAVFAYSKSKGLFAGVSVEGSAIIERREANRK 182

Query: 64  FYGNPSICASAILLGSLPRPPAAAILYHAL 93
           FYG+ +  A  IL G +  PPA   L+  L
Sbjct: 183 FYGD-NCTAKMILSGRIRPPPAVDPLFRVL 211

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
225461752	522	PREDICTED: uncharacterized protein LOC10	1.0	0.195	0.823	3e-41
224076922	420	predicted protein [Populus trichocarpa]	0.990	0.240	0.792	9e-39
255562532	524	zinc ion binding protein, putative [Rici	0.970	0.188	0.818	1e-38
224114605	476	predicted protein [Populus trichocarpa]	0.990	0.212	0.782	4e-38
356549190	540	PREDICTED: uncharacterized protein LOC10	0.990	0.187	0.762	5e-38
449459372	524	PREDICTED: uncharacterized protein LOC10	1.0	0.194	0.725	7e-38
356555455	540	PREDICTED: uncharacterized protein LOC10	0.990	0.187	0.742	1e-37
388519659	315	unknown [Lotus japonicus]	0.990	0.320	0.762	3e-37
297740550	723	unnamed protein product [Vitis vinifera]	0.980	0.138	0.74	4e-37
357447079	409	Lateral signaling target protein-like pr	0.980	0.244	0.75	2e-36

>gi|225461752|ref|XP_002285551.1| PREDICTED: uncharacterized protein LOC100246883 [Vitis vinifera] gi|302142862|emb|CBI20157.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 89/102 (87%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
           MHFS GAGLSAA GI GR+AE DVRAG GGYAACYTYSC KGAFVGCSL+G+IV TR++E
Sbjct: 421 MHFSVGAGLSAAVGIAGRSAEADVRAGDGGYAACYTYSCCKGAFVGCSLKGNIVTTRSQE 480

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER 102
           N RFYGNPSI AS ILLGSLPRPPAAA LYHALSDLF K ER
Sbjct: 481 NCRFYGNPSISASDILLGSLPRPPAAATLYHALSDLFLKFER 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076922|ref|XP_002305051.1| predicted protein [Populus trichocarpa] gi|222848015|gb|EEE85562.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 89/101 (88%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           H SFGAG+SAA GI GRA E D+RAG GGYAACYTYSCSKGAFVGCSLEGSIV TR++EN
Sbjct: 320 HLSFGAGVSAAVGIAGRAFEADLRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRSKEN 379

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER 102
           SRFYG+ S+ AS ILLGSLPRPPAAAILY AL+DL++K ER
Sbjct: 380 SRFYGSQSLSASDILLGSLPRPPAAAILYRALADLYQKFER 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562532|ref|XP_002522272.1| zinc ion binding protein, putative [Ricinus communis] gi|223538525|gb|EEF40130.1| zinc ion binding protein, putative [Ricinus communis]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/99 (81%), Positives = 87/99 (87%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           H S GAGLSAA G+VGRA E D+RAG GGYAACYTYSCSKGAFVGCSLEGSIV TR++EN
Sbjct: 423 HLSIGAGLSAAVGVVGRAVEADLRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRSKEN 482

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKV 100
           SRFYG+ SI AS ILLGSLPRPPAAAILY ALSDL +KV
Sbjct: 483 SRFYGSQSITASDILLGSLPRPPAAAILYRALSDLSQKV 521

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114605|ref|XP_002316808.1| predicted protein [Populus trichocarpa] gi|222859873|gb|EEE97420.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 89/101 (88%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           H S GAG+SAA GI GRA E D+RAG GGYAACYTYSCSKGAFVGCSLEGS+VATR++EN
Sbjct: 376 HLSLGAGVSAAVGITGRAFEADLRAGDGGYAACYTYSCSKGAFVGCSLEGSVVATRSKEN 435

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER 102
           SRFYG+ SI AS ILLGSLPRPPAAAILY AL DL++K++R
Sbjct: 436 SRFYGSQSISASDILLGSLPRPPAAAILYRALVDLYQKLDR 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549190|ref|XP_003542980.1| PREDICTED: uncharacterized protein LOC100813648 [Glycine max]

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/101 (76%), Positives = 84/101 (83%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
           MH S GAGLSAA GIVGR+ E DVRAG GGYAACYTYSCSKGAFVGCSLEGS+V TR +E
Sbjct: 439 MHLSLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMVTTRTQE 498

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
           NS FYG+ SI A+ ILLGSLPRPPAAAILY  L DL+ K +
Sbjct: 499 NSLFYGSQSITATDILLGSLPRPPAAAILYRTLVDLYSKFD 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459372|ref|XP_004147420.1| PREDICTED: uncharacterized protein LOC101212249 [Cucumis sativus] gi|449530624|ref|XP_004172294.1| PREDICTED: uncharacterized LOC101212249 [Cucumis sativus]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 88/102 (86%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
           MH + GAGLSAA G++GR AE DVRAG GG+ +CYTYSCSKGAFVGCSL+GSIV TR +E
Sbjct: 423 MHLAVGAGLSAAVGVIGRTAEADVRAGDGGFGSCYTYSCSKGAFVGCSLKGSIVTTRTQE 482

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVER 102
           N+RFYGN SI AS ILLGSLPRPPAAA+LY AL+DL++K+ +
Sbjct: 483 NARFYGNQSITASDILLGSLPRPPAAAMLYRALTDLYQKINK 524

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555455|ref|XP_003546047.1| PREDICTED: uncharacterized protein LOC100785341 [Glycine max]

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/101 (74%), Positives = 85/101 (84%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
           MH S GAGLSAA G VGR+ + DVRAG GGYAACYTY+CSKGAFVGCSLEGS+V TR +E
Sbjct: 439 MHLSLGAGLSAAVGFVGRSVKADVRAGDGGYAACYTYNCSKGAFVGCSLEGSMVTTRTQE 498

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
           NSRFYG+ SI A+ IL GSLPRPPAAAILY AL+DL+ K +
Sbjct: 499 NSRFYGSQSITATDILFGSLPRPPAAAILYRALADLYSKFD 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519659|gb|AFK47891.1| unknown [Lotus japonicus]

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
           +H S GAGLSAA GI GRA E DVRAG GGYAACYTYSCSKGAFVGCSLEGSIV TR +E
Sbjct: 214 VHLSLGAGLSAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVITRTQE 273

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
           NSRFYG+ SI ++ ILLGSLPRPPAAAILY +L+DL+ K++
Sbjct: 274 NSRFYGSQSITSTDILLGSLPRPPAAAILYRSLADLYGKLD 314

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740550|emb|CBI30732.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/100 (74%), Positives = 85/100 (85%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           H S G GLSAA GIVGRA E DVRAG GG+AACYTYSCSKGAF+GCS+ GSI  TR +EN
Sbjct: 623 HLSVGGGLSAAVGIVGRAVEADVRAGDGGFAACYTYSCSKGAFLGCSIVGSIFTTRKQEN 682

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
           SRFYG+ SI AS ILLGSLP+PPAAAILY AL+DL++K++
Sbjct: 683 SRFYGSQSISASDILLGSLPQPPAAAILYRALTDLYQKLD 722

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447079|ref|XP_003593815.1| Lateral signaling target protein-like protein, partial [Medicago truncatula] gi|355482863|gb|AES64066.1| Lateral signaling target protein-like protein, partial [Medicago truncatula]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 85/100 (85%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
           H S GAG+SAA G++GRA E DVRAG GGYAACYTYSCSKGAFVGCSLEGSIV TR  EN
Sbjct: 308 HVSLGAGMSAAVGVIGRAVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRTHEN 367

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKVE 101
            RFYG+ S+ AS ILLGSLPRPPAAAILY +L+DL+ K++
Sbjct: 368 CRFYGSQSLNASDILLGSLPRPPAAAILYRSLADLYLKID 407

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2019362	510	AT1G29800 [Arabidopsis thalian	0.843	0.168	0.755	1.5e-31
TAIR|locus:2084716	485	AT3G43230 [Arabidopsis thalian	0.980	0.206	0.48	7.6e-19
UNIPROTKB|F1NNR2	294	SH3YL1 "Uncharacterized protei	0.813	0.282	0.465	5.3e-11
SGD|S000002968	459	LSB3 "Protein containing a C-t	0.754	0.167	0.448	9.8e-11
ASPGD|ASPL0000012058	410	AN4168 [Emericella nidulans (t	0.764	0.190	0.443	2.1e-10
SGD|S000001058	468	YSC84 "Actin-binding protein"	0.745	0.162	0.443	5.8e-10
POMBASE|SPAPJ696.02	430	SPAPJ696.02 "actin cortical pa	0.794	0.188	0.421	4.7e-09
UNIPROTKB|F1Q0G4	343	SH3YL1 "Uncharacterized protei	0.813	0.241	0.430	1.1e-08
UNIPROTKB|Q96HL8	342	SH3YL1 "SH3 domain-containing	0.813	0.242	0.430	1.3e-08
UNIPROTKB|H9GW32	245	SH3YL1 "SH3 domain-containing	0.813	0.338	0.418	1.5e-08

TAIR|locus:2019362 AT1G29800 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 65/86 (75%), Positives = 72/86 (83%)

Query:    15 IVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASA 74
             + GRA E D+RAG GGYAACYTYSCSKGAFVGCSLEGSI  TR  ENSRFYG+ S+ AS 
Sbjct:   409 VTGRAVEADIRAGSGGYAACYTYSCSKGAFVGCSLEGSIFTTRTSENSRFYGSQSLAASD 468

Query:    75 ILLGSLPRPPAAAILYHALSDLFEKV 100
             ILLGSLPRPPAAA LY AL DL++K+
Sbjct:   469 ILLGSLPRPPAAAALYRALGDLYQKM 494

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2084716 AT3G43230 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 48/100 (48%), Positives = 62/100 (62%)

Query:     1 MHXXXXXXXXXXXXIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
             MH             +GR  E D+RAG  G   CYTYS SKGAFVG SLEG++VATR + 
Sbjct:   384 MHFSLGAGCSAAAGPIGRVLEADLRAGDKGSGVCYTYSRSKGAFVGVSLEGNLVATRRDM 443

Query:    61 NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDLFEKV 100
             N +FYG+P +  S ILLG + +P AA  LY AL +L+ ++
Sbjct:   444 NVKFYGDPYLSTSDILLGMVDQPKAAEPLYTALRELYARL 483

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

UNIPROTKB|F1NNR2 SH3YL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 40/86 (46%), Positives = 48/86 (55%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR  E DV   +   AA YTY  S+G F G SLEG+ +  R E N +FYG   I ASAI
Sbjct:   132 LGRNLEGDV--ALRSSAAVYTYCKSRGLFAGVSLEGTCLIERKETNRKFYGQ-DIRASAI 188

Query:    76 LLGSLPRPPAAAILYHALSDLFEKVE 101
             LLG +P P  A  LY  L+   E  E
Sbjct:   189 LLGDVPFPAQAEDLYETLASFTEVYE 214

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:1900027 "regulation of ruffle assembly" evidence=IEA

SGD|S000002968 LSB3 "Protein containing a C-terminal SH3 domain" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 158 (60.7 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 35/78 (44%), Positives = 45/78 (57%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR+AE    A  GG AA + YS SKG F G S+EGS +  R E N +FYG+ +  A  I
Sbjct:   135 LGRSAEAAASASAGGVAAVFAYSKSKGLFAGVSVEGSAIIERREANRKFYGD-NCTAKMI 193

Query:    76 LLGSLPRPPAAAILYHAL 93
             L G +  PPA   L+  L
Sbjct:   194 LSGRIRPPPAVDPLFRVL 211

GO:0051666 "actin cortical patch localization" evidence=IGI;IMP

GO:0005935 "cellular bud neck" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000012058 AN4168 [Emericella nidulans (taxid:162425)]

 Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 35/79 (44%), Positives = 46/79 (58%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             VGR AE    A   G AA ++YS +KG F G SLEGS++  R + N R Y N  + A  +
Sbjct:   137 VGRNAEAAGAASTKGVAAVFSYSKTKGLFAGVSLEGSMLVERRDANERLY-NSRVSARQL 195

Query:    76 LLGSLPRPPAAAILYHALS 94
             L G++P PPAA  L   L+
Sbjct:   196 LSGTIPPPPAAEPLMRVLN 214

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000001058 YSC84 "Actin-binding protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 151 (58.2 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 35/79 (44%), Positives = 46/79 (58%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR+AE    A  GG +A + YS SKG F G S+EGS +  R E N +FYG+   C S +
Sbjct:   135 LGRSAEAAASASTGGVSAVFAYSKSKGLFAGVSVEGSAILERREANRKFYGDN--CTSKM 192

Query:    76 LL-GSLPRPPAAAILYHAL 93
             +L G +  PPAA  L   L
Sbjct:   193 ILSGRVKVPPAADPLLRIL 211

GO:0051666 "actin cortical patch localization" evidence=IGI;IMP

GO:0051015 "actin filament binding" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0007015 "actin filament organization" evidence=IPI

GO:0030479 "actin cortical patch" evidence=IEA;IDA

GO:0030036 "actin cytoskeleton organization" evidence=IGI

GO:0006897 "endocytosis" evidence=IGI

GO:0005737 "cytoplasm" evidence=IEA

POMBASE|SPAPJ696.02 SPAPJ696.02 "actin cortical patch component Lsb4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 35/83 (42%), Positives = 46/83 (55%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR AE    A VGG A  ++YS +KG F G SLEGS++  R + N   Y    I A  +
Sbjct:   135 LGRNAEAGGGASVGGMAPMFSYSKTKGLFAGVSLEGSVLVERRDANRSLYRG-DITAKRL 193

Query:    76 LLGSLPRPPAAAILYHAL-SDLF 97
             L G + +P AA  LY  L S +F
Sbjct:   194 LSGQVAQPAAADPLYRVLNSKIF 216

GO:0003674 "molecular_function" evidence=ND

GO:0006897 "endocytosis" evidence=ISO

GO:0007015 "actin filament organization" evidence=ISO

GO:0030479 "actin cortical patch" evidence=ISO

UNIPROTKB|F1Q0G4 SH3YL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 37/86 (43%), Positives = 45/86 (52%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N +FY    I A  I
Sbjct:   134 LGRNLEGNV--ALRSPAAVFTYCKSRGLFAGISLEGSCLIERKETNRKFYCQ-DIRAYDI 190

Query:    76 LLGSLPRPPAAAILYHALSDLFEKVE 101
             L G +PRP  A  LY  L    EK E
Sbjct:   191 LFGEVPRPAQAEDLYEILDSFTEKYE 216

GO:1900027 "regulation of ruffle assembly" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

UNIPROTKB|Q96HL8 SH3YL1 "SH3 domain-containing YSC84-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 37/86 (43%), Positives = 44/86 (51%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N +FY    I A  I
Sbjct:   133 LGRNLEGNV--ALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFYCQ-DIRAYDI 189

Query:    76 LLGSLPRPPAAAILYHALSDLFEKVE 101
             L G  PRP  A  LY  L    EK E
Sbjct:   190 LFGDTPRPAQAEDLYEILDSFTEKYE 215

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

GO:1900027 "regulation of ruffle assembly" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IDA

GO:0032587 "ruffle membrane" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

UNIPROTKB|H9GW32 SH3YL1 "SH3 domain-containing YSC84-like protein 1" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 36/86 (41%), Positives = 44/86 (51%)

Query:    16 VGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAI 75
             +GR  E +V   +   AA +TY  S+G F G SLEGS +  R E N +FY    I A  I
Sbjct:    37 LGRNLEGNV--SLRSSAAVFTYCKSRGLFAGISLEGSCLIERKETNRKFYCQ-DIRAYDI 93

Query:    76 LLGSLPRPPAAAILYHALSDLFEKVE 101
             L G + RP  A  LY  L    EK E
Sbjct:    94 LFGDITRPAQAEDLYEVLDSFTEKYE 119

GO:1900027 "regulation of ruffle assembly" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027866001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (484 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	102
cd11526	201	cd11526, SYLF_FYVE, The SYLF domain (also called D	8e-37
pfam04366	125	pfam04366, DUF500, Family of unknown function (DUF	2e-28
cd11524	194	cd11524, SYLF, The SYLF domain (also called DUF500	2e-23
cd11525	199	cd11525, SYLF_SH3YL1_like, The SYLF domain (also c	3e-19
COG2930	227	COG2930, COG2930, Uncharacterized conserved protei	1e-13

>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins

 Score =  122 bits (309), Expect = 8e-37
 Identities = 58/96 (60%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
              S GA LS A G +GRAAE D+RAG GG AACY+YS SKG F G SLEGS+VATR + 
Sbjct: 107 GQVSLGAELSVAVGPLGRAAEADLRAGDGGVAACYSYSHSKGLFAGVSLEGSVVATRKDV 166

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALSDL 96
           N +FYG P +  + ILLGS+P+PPAA  LY AL +L
Sbjct: 167 NHKFYGRP-VTPTEILLGSVPQPPAAEPLYDALDEL 201

This subfamily is composed of uncharacterized proteins from plants and stramenopiles containing a FYVE zinc finger domain followed by a SYLF domain (also called DUF500). The SYLF domain of the related protein, SH3YL1, binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 201

>gnl|CDD|218046 pfam04366, DUF500, Family of unknown function (DUF500)

 Score = 99.1 bits (248), Expect = 2e-28
 Identities = 44/94 (46%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 1   MHFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEE 60
             F+ G   S AAG VGR AE    A +G  A  Y+YS S+G F G SLEGS++  R + 
Sbjct: 33  GKFTLGGDASVAAGPVGRGAEAATDASLG--AEIYSYSKSRGLFAGVSLEGSVLTERRDA 90

Query: 61  NSRFYGNPSICASAILLGSLPRPPAAAILYHALS 94
           N  FYG   + A  IL GS+P PPAA  L  AL+
Sbjct: 91  NRAFYGRG-VTARDILAGSVPPPPAARPLMEALA 123

Proteins in this family often also contain an SH3 domain (pfam00018), or a FYVE zinc finger (pfam01363). Length = 125

>gnl|CDD|211400 cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module

 Score = 88.4 bits (220), Expect = 2e-23
 Identities = 41/92 (44%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 2   HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEEN 61
            F+ GA  SAAAG VGR AE          A  Y+YS SKG F G SLEGS+++   + N
Sbjct: 104 KFTLGADASAAAGPVGRGAEAG--TDTALGAEIYSYSRSKGLFAGVSLEGSVISVDDDAN 161

Query: 62  SRFYGNPSICASAILLGSLPRPPAAAILYHAL 93
             +YG P      ILLG +  PP A  L  AL
Sbjct: 162 RAYYGRPVS-PEDILLGKVAPPPEAQPLREAL 192

The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 194

>gnl|CDD|211401 cd11525, SYLF_SH3YL1_like, The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins

 Score = 77.7 bits (192), Expect = 3e-19
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 4   SFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSR 63
           + G  +S AAG +GR AE        G AA ++YS ++G F G SLEGS++  R + N +
Sbjct: 111 TLGGNVSVAAGPLGRNAEAAG--SASGLAAIFSYSKTRGLFAGVSLEGSVLIERKDANRK 168

Query: 64  FYGNPSICASAILLGSLPRPPAAAILYHALSD 95
           FYG   I A  +L G +P PP A  LY  L  
Sbjct: 169 FYGK-DISAKDLLSGEVPPPPEADPLYRILDS 199

This subfamily is composed of yeast Ysc84 (also called LAS17-binding protein 4, Lsb4p) and Lsb3p proteins, vertebrate SH3YL1 (SH3 domain containing Ysc84-like 1), and similar proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. Ysc84p localizes to actin patches and plays an important role in actin polymerization during endocytosis. A study of the yeast SH3 domain interactome predicts that Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 199

>gnl|CDD|225482 COG2930, COG2930, Uncharacterized conserved protein [Function unknown]

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 3   FSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENS 62
            + G   S AAG +GR AE    A +GG AA ++YS +KG F G S+EGS +  R E N 
Sbjct: 130 ITLGGNASVAAGPLGRNAEAAADASLGGVAAVFSYSKAKGLFAGVSVEGSAITERREANR 189

Query: 63  RFYGNPSICASAILLGSLPRPPAAAILYHAL 93
           +FYG+ +I    IL G +  PPAA  L   L
Sbjct: 190 KFYGD-NITPKMILSGRVAEPPAADPLARVL 219

Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF04366	126	DUF500: Family of unknown function (DUF500); Inter	99.98
COG2930	227	Uncharacterized conserved protein [Function unknow	99.96
KOG1843	473	consensus Uncharacterized conserved protein [Funct	99.85
KOG1843	473	consensus Uncharacterized conserved protein [Funct	99.05

>PF04366 DUF500: Family of unknown function (DUF500); InterPro: IPR007461 This entry corresponds to proteins having the Ysc84 actin binding domain (YAB)

Probab=99.98  E-value=2.1e-32  Score=189.05  Aligned_cols=93  Identities=48%  Similarity=0.784  Sum_probs=87.3

Q ss_pred             eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183            2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP   81 (102)
Q Consensus         2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~   81 (102)
                      +++||+|+++++||+|+++++++.+.. ..++||+|++|||+|+|+||+|++|.+|+|+|++|||+ .++++|||.|+++
T Consensus        34 ~~~lG~~~s~a~gp~g~~~~~~~~~~~-~~~~v~~ys~s~Gl~~G~sl~G~~i~~~~~~N~~~YG~-~v~~~~IL~g~~~  111 (126)
T PF04366_consen   34 KFTLGGDASAAAGPVGRSAEADTDTSD-GSADVYSYSKSKGLFAGVSLEGSKISVRDDANARFYGR-DVTPEDILNGKVP  111 (126)
T ss_pred             CEEEeeeeEEEecCcCccccccccccc-ccCceEEEEecCeEEEEEEEcceEEEEChHHHHHHhCC-CCCHHHHhCCCCC
Confidence            689999999999999999999887753 35899999999999999999999999999999999999 6999999999999


Q ss_pred             CChHHHHHHHHHHHH
Q 034183           82 RPPAAAILYHALSDL   96 (102)
Q Consensus        82 ~p~~a~~L~~~L~~~   96 (102)
                      +||++++||++|+++
T Consensus       112 ~p~~a~~L~~~L~~a  126 (126)
T PF04366_consen  112 PPPEAQPLYEALNKA  126 (126)
T ss_pred             CCHHHHHHHHHHHhC
Confidence            999999999999874

This 184 amino acid domain lies at the N terminus of the Saccharomyces cerevisiae (Baker's yeast) protein Ysc84 (P32793 from SWISSPROT). It is essential for the organisation of the actin cytoskeleton, and interacts with the Arp2/3 complex []. Homologous domains are found across a range of species. In fungi and vertebrates the domain is at the N terminus, while there is an SH3 domain at the C terminus. In plants the domain seems to be at the C terminus and in association with a FYVE domain. Interestingly, the domain is absent in invertebrates. The domain is also found in prokaryotes, where presumable it is also involved in protein binding, perhaps to the prokaryotic homologue of actin [].

>COG2930 Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=2.3e-30  Score=191.19  Aligned_cols=94  Identities=43%  Similarity=0.700  Sum_probs=89.0

Q ss_pred             eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183            2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP   81 (102)
Q Consensus         2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~   81 (102)
                      ++|||+|+|||+||+|||+++..+.+.++.+.||+||++||||+|+||||+.|.+|.+.|++|||. ++||++||.|++.
T Consensus       129 ~iTlGg~~SVAagplGrna~aa~d~~~~~~a~v~sys~~kGLfAGvSvEGs~i~~~~eanr~~Y~~-~~t~k~il~grv~  207 (227)
T COG2930         129 TITLGGNASVAAGPLGRNAEAAADASLGGVAAVFSYSKAKGLFAGVSVEGSAITERREANRKFYGD-NITPKMILSGRVA  207 (227)
T ss_pred             cEEecceeEEeeccccccchhccccccCCcceEEEEEecccceeeeeeccceeeehhhhhhHHhcC-CCCHHHhhcCccC
Confidence            589999999999999999998888776677999999999999999999999999999999999999 7999999999999


Q ss_pred             CChHHHHHHHHHHHH
Q 034183           82 RPPAAAILYHALSDL   96 (102)
Q Consensus        82 ~p~~a~~L~~~L~~~   96 (102)
                      .||.+++|+..|+.-
T Consensus       208 ~ppaad~l~~~l~~~  222 (227)
T COG2930         208 EPPAADPLARVLNSK  222 (227)
T ss_pred             CCCcccHHHHHHHhh
Confidence            999999999999764

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=5.4e-22  Score=159.13  Aligned_cols=99  Identities=41%  Similarity=0.590  Sum_probs=92.2

Q ss_pred             eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183            2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP   81 (102)
Q Consensus         2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~   81 (102)
                      .++||++++++|||+||++++......+..+++|.|++++|+|+|+|++|+.|.+|++.|++|||. .++...||.|.++
T Consensus       121 ~itLGgn~svsAgPLgr~aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~-~cra~~ilsg~vp  199 (473)
T KOG1843|consen  121 TITLGGNLSVSAGPLGRNAEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGI-FCRAKSILSGLVP  199 (473)
T ss_pred             eeeecCcceeccCcccccchhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCc-cchhhhhhccCCC
Confidence            369999999999999999887666665577999999999999999999999999999999999999 7999999999999


Q ss_pred             CChHHHHHHHHHHHHHHhhc
Q 034183           82 RPPAAAILYHALSDLFEKVE  101 (102)
Q Consensus        82 ~p~~a~~L~~~L~~~~~~~~  101 (102)
                      +|+.+++|+++|+.-+.++|
T Consensus       200 ~p~a~d~l~RVldS~~~nl~  219 (473)
T KOG1843|consen  200 VPFAADPLQRVLDSCAFNLE  219 (473)
T ss_pred             CCcccCCHHHHHhhHhhccC
Confidence            99999999999999888774

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=4.8e-11  Score=96.48  Aligned_cols=98  Identities=42%  Similarity=0.584  Sum_probs=90.5

Q ss_pred             eeeecCceeEEeccccccccccccccCCCcccEEEEEcccceeEEEeeeeeEEEechHHHhhccCCCCCChhhhhcCCCC
Q 034183            2 HFSFGAGLSAAAGIVGRAAEVDVRAGVGGYAACYTYSCSKGAFVGCSLEGSIVATRAEENSRFYGNPSICASAILLGSLP   81 (102)
Q Consensus         2 ~~~lG~d~svaaGP~Gr~~~~~~~~~~~~~a~i~sYs~SkGlfaGvsl~Gs~i~~r~d~N~~~Yg~~~vt~~~IL~g~v~   81 (102)
                      ++.+|+..+.++||.||..+++....++..+..++|+.+||.|.|.||++.....+.+.|-+|||.+.....|||. -++
T Consensus       367 h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysfage~~GDl~f~kgDii~-il~  445 (473)
T KOG1843|consen  367 HRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSFAGEQPGDLSFQKGDIIT-ILK  445 (473)
T ss_pred             ccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehhccCCCCCcccccCceEE-Eec
Confidence            5678999999999999999999888777789999999999999999999999999999999999998889999999 789


Q ss_pred             CChHHHHHHHHHHHHHHhh
Q 034183           82 RPPAAAILYHALSDLFEKV  100 (102)
Q Consensus        82 ~p~~a~~L~~~L~~~~~~~  100 (102)
                      .|+.+.+++..+-...++|
T Consensus       446 ks~s~~dwwtgr~~~~egi  464 (473)
T KOG1843|consen  446 KSDSANDWWTGRGNGYEGI  464 (473)
T ss_pred             CCcchhhHHHhhccccccc
Confidence            9999999999998877665

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00