Citrus Sinensis ID: 034206


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
ccHHHHHHHHHHHHccccccEEEcccHHHHHHHHccccEEEcccEEcccccccccEEEEEEEEccccccccEEccccccEEEcccccccccccEEEEEEEc
cHHHHHHHHHHHHHHHHHccHHHccHHHHHHHcccccEEEccccHHHHHccccccccccEEEHHcHHHcccEEEcccccccEcccccccccccEEEEEEEc
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYrsgyvsngsvyGISKAYDNALMVGLTLIQSARAkgavcldgtlpgyhlhrgygsgaNSWLIQLEVS
MKLLLVSFVVLTafgkwvdgFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
**LLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQL***
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGS**********ALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLEVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query101
255543054 418 pectin acetylesterase, putative [Ricinus 0.930 0.224 0.642 3e-26
42570541 416 Pectinacetylesterase family protein [Ara 0.900 0.218 0.585 8e-23
222423720 416 AT5G26670 [Arabidopsis thaliana] 0.900 0.218 0.585 9e-23
3047082 422 similar to Vigna radiata pectinacetylest 0.900 0.215 0.585 9e-23
356505725 421 PREDICTED: protein notum homolog [Glycin 0.821 0.197 0.602 1e-22
147833905 423 hypothetical protein VITISV_020113 [Viti 0.841 0.200 0.609 8e-21
225450421 423 PREDICTED: protein notum homolog isoform 0.841 0.200 0.609 1e-20
297808687 416 hypothetical protein ARALYDRAFT_489494 [ 0.871 0.211 0.568 3e-20
224124292 393 predicted protein [Populus trichocarpa] 0.673 0.173 0.688 4e-20
18397406 415 Pectin lyase-like protein [Arabidopsis t 0.900 0.219 0.57 7e-20
>gi|255543054|ref|XP_002512590.1| pectin acetylesterase, putative [Ricinus communis] gi|223548551|gb|EEF50042.1| pectin acetylesterase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 74/98 (75%), Gaps = 4/98 (4%)

Query: 2  KLLLVSFVVLTAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGLT 61
          KLL V FV+++  GKW +G LE NETE    E   +G  S+   +  S  ++NALMVGLT
Sbjct: 3  KLLWVMFVMVSVIGKWANG-LELNETE---PEILYTGVASDEGYFNESLVFNNALMVGLT 58

Query: 62 LIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 99
          LI+SA A+GAVCLDGTLPGYHLHRGYGSGANSWLIQLE
Sbjct: 59 LIRSAGARGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 96




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570541|ref|NP_850878.2| Pectinacetylesterase family protein [Arabidopsis thaliana] gi|51536518|gb|AAU05497.1| At5g26670 [Arabidopsis thaliana] gi|332006195|gb|AED93578.1| Pectinacetylesterase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423720|dbj|BAH19826.1| AT5G26670 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3047082|gb|AAC13595.1| similar to Vigna radiata pectinacetylesterase precursor (GB:X99348) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356505725|ref|XP_003521640.1| PREDICTED: protein notum homolog [Glycine max] Back     alignment and taxonomy information
>gi|147833905|emb|CAN62190.1| hypothetical protein VITISV_020113 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450421|ref|XP_002279030.1| PREDICTED: protein notum homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297808687|ref|XP_002872227.1| hypothetical protein ARALYDRAFT_489494 [Arabidopsis lyrata subsp. lyrata] gi|297318064|gb|EFH48486.1| hypothetical protein ARALYDRAFT_489494 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224124292|ref|XP_002329987.1| predicted protein [Populus trichocarpa] gi|222871412|gb|EEF08543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18397406|ref|NP_566263.1| Pectin lyase-like protein [Arabidopsis thaliana] gi|6671966|gb|AAF23225.1|AC013454_12 putative pectinacetylesterase [Arabidopsis thaliana] gi|16226325|gb|AAL16135.1|AF428303_1 AT3g05910/F2O10_3 [Arabidopsis thaliana] gi|15292827|gb|AAK92782.1| putative pectinacetylesterase [Arabidopsis thaliana] gi|20465793|gb|AAM20385.1| putative pectinacetylesterase [Arabidopsis thaliana] gi|332640793|gb|AEE74314.1| Pectin lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query101
TAIR|locus:2146814 416 AT5G26670 "AT5G26670" [Arabido 0.900 0.218 0.585 4.6e-23
TAIR|locus:2074459 415 AT3G05910 "AT3G05910" [Arabido 0.900 0.219 0.58 9.1e-21
TAIR|locus:2206490 444 AT1G57590 "AT1G57590" [Arabido 0.920 0.209 0.54 3.5e-20
TAIR|locus:2012245 388 AT1G09550 "AT1G09550" [Arabido 0.455 0.118 0.782 9.9e-16
TAIR|locus:2041429 416 AT2G46930 "AT2G46930" [Arabido 0.435 0.105 0.840 2e-14
TAIR|locus:2097973 419 AT3G62060 "AT3G62060" [Arabido 0.425 0.102 0.813 5.6e-14
TAIR|locus:2140436 397 AT4G19420 "AT4G19420" [Arabido 0.435 0.110 0.659 1.2e-10
TAIR|locus:5019474748 409 AT3G09405 "AT3G09405" [Arabido 0.465 0.114 0.574 3.5e-10
TAIR|locus:2172833 451 AT5G23870 "AT5G23870" [Arabido 0.415 0.093 0.571 1.1e-09
TAIR|locus:2140431 391 AT4G19410 [Arabidopsis thalian 0.415 0.107 0.571 1.4e-09
TAIR|locus:2146814 AT5G26670 "AT5G26670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 268 (99.4 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 58/99 (58%), Positives = 69/99 (69%)

Query:     2 KLLLVSFVVL-TAFGKWVDGFLEFNETELYQIENYRSGYVSNGSVYGISKAYDNALMVGL 60
             KL L+ F+V     G   +G+LEFN TEL +IE+   G+    S +       N LMVGL
Sbjct:     3 KLFLLGFIVAGLVLGNEANGYLEFNVTELDRIEDLEFGFSKFSSNF-------NPLMVGL 55

Query:    61 TLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 99
             TLI+ A +KGAVCLDGTLPGYHLHRG+GSGANSWLIQLE
Sbjct:    56 TLIRGAGSKGAVCLDGTLPGYHLHRGHGSGANSWLIQLE 94




GO:0004091 "carboxylesterase activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
TAIR|locus:2074459 AT3G05910 "AT3G05910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206490 AT1G57590 "AT1G57590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012245 AT1G09550 "AT1G09550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041429 AT2G46930 "AT2G46930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097973 AT3G62060 "AT3G62060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140436 AT4G19420 "AT4G19420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:5019474748 AT3G09405 "AT3G09405" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172833 AT5G23870 "AT5G23870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140431 AT4G19410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT5G26670
pectinacetylesterase, putative; pectinacetylesterase, putative; FUNCTIONS IN- carboxylesterase activity; LOCATED IN- endomembrane system; CONTAINS InterPro DOMAIN/s- Pectinacetylesterase (InterPro-IPR004963); BEST Arabidopsis thaliana protein match is- pectinacetylesterase, putative (TAIR-AT3G05910.1); Has 391 Blast hits to 385 proteins in 75 species- Archae - 0; Bacteria - 32; Metazoa - 114; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (416 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
CSLG1
ATCSLG1; cellulose synthase/ transferase/ transferase, transferring glycosyl groups; encodes a [...] (760 aa)
       0.679
AT1G70370
BURP domain-containing protein / polygalacturonase, putative; BURP domain-containing protein / [...] (626 aa)
       0.679
2A6
2A6; oxidoreductase; 2A6; FUNCTIONS IN- oxidoreductase activity; LOCATED IN- endomembrane syste [...] (398 aa)
       0.679
AT1G60590
polygalacturonase, putative / pectinase, putative; polygalacturonase, putative / pectinase, put [...] (540 aa)
       0.659
AT1G03400
2-oxoglutarate-dependent dioxygenase, putative; A single copy gene that encodes a protein with [...] (351 aa)
       0.657
CSLG3
ATCSLG3; cellulose synthase/ transferase/ transferase, transferring glycosyl groups; encodes a [...] (751 aa)
       0.629
AT1G04350
2-oxoglutarate-dependent dioxygenase, putative; encodes a protein whose sequence is similar to [...] (360 aa)
       0.627
BGLU9
BGLU9 (BETA GLUCOSIDASE 9); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compo [...] (506 aa)
       0.623
ATEXPB1
ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1); member of BETA-EXPANSINS. Naming convention from th [...] (271 aa)
       0.538
AT1G04380
2-oxoglutarate-dependent dioxygenase, putative; encodes a protein similar to a 2-oxoglutarate-d [...] (345 aa)
       0.534

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query101
pfam03283 362 pfam03283, PAE, Pectinacetylesterase 8e-23
>gnl|CDD|217474 pfam03283, PAE, Pectinacetylesterase Back     alignment and domain information
 Score = 89.7 bits (223), Expect = 8e-23
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 54 NALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE 99
            LMV LTL+Q A AKGAVCLDG+ PGY+LHRG GSG+N+WL+ LE
Sbjct: 13 QKLMVKLTLLQDAVAKGAVCLDGSPPGYYLHRGSGSGSNNWLVHLE 58


Length = 362

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 101
KOG4287 402 consensus Pectin acetylesterase and similar protei 99.78
PF03283 361 PAE: Pectinacetylesterase 99.7
>KOG4287 consensus Pectin acetylesterase and similar proteins [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
Probab=99.78  E-value=3.3e-20  Score=154.87  Aligned_cols=60  Identities=67%  Similarity=0.993  Sum_probs=52.7

Q ss_pred             eeeceeeeecccccccceeeEEEeccccccCceecCCCCCeeeeecccCCCCccEEEEEE
Q 034206           40 VSNGSVYGISKAYDNALMVGLTLIQSARAKGAVCLDGTLPGYHLHRGYGSGANSWLIQLE   99 (101)
Q Consensus        40 w~~~~~~~~~~~~~~~~~V~ltLl~~A~~~gAvCLDGSpPgYy~~~G~G~Ga~~Wli~lE   99 (101)
                      |+..+++......++.++|++|+++.|.++||+|||||+|||||+||+|+|+|+|+||+|
T Consensus        20 ~s~~lv~~~~~~~s~~~~v~ltli~~A~akGAvClDGSlpgYhl~~g~GSg~n~wliqle   79 (402)
T KOG4287|consen   20 WSIPLVFGSLVIGSPGLMVPLTLIRGAAAKGAVCLDGSLPGYHLHRGSGSGANNWLIQLE   79 (402)
T ss_pred             hhhhhhhhhhcccCccccchhHHHhhHhhcCceecCCCCcceeeccCCCccccceeEecc
Confidence            444456666555566689999999999999999999999999999999999999999998



>PF03283 PAE: Pectinacetylesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00