Citrus Sinensis ID: 034218

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MVRKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mvrkapdtadrekgrytlirdpenfqfgiydkplpcfgcgvgwfSFLLGFVFPLMWYYgtflyfgnhcrkdprERAGLAASAIAAMACSVVMLVIVVFRLM
Flexible Loop (DISEMBL)
mvrkapdtadrekgrytlirdpenFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Low Complexity Region (SEG)
MVRKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERaglaasaiaamaCSVVMLVIVVFRLM
Disordered region (IsUnstruct)
***************YTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFR**
Disordered Region (DISOPRED)
***************YTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Disordered Region (DISEMBL)
***********EKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Disordered Region (DISPRO)
*************GRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q8L9S1	158	60S ribosomal protein L18	no	no	0.633	0.405	0.408	2e-05

>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 31  DKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACS 89
           +  LPC G G+GWF F++GF+F  + WY G F+        D RE+AG  A +IA    S
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV--DHREKAGYVACSIA----S 140

Query: 90  VVMLVIVVFRL 100
           VV L+ V+  +
Sbjct: 141 VVYLIAVMLGM 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
356565888	144	PREDICTED: uncharacterized protein LOC10	0.970	0.680	0.683	1e-34
388497666	134	unknown [Lotus japonicus]	0.930	0.701	0.712	7e-34
356558389	138	PREDICTED: uncharacterized protein LOC10	0.910	0.666	0.706	1e-33
255546063	142	conserved hypothetical protein [Ricinus	0.940	0.669	0.789	2e-33
356530415	138	PREDICTED: uncharacterized protein LOC10	0.910	0.666	0.695	3e-33
224091200	141	predicted protein [Populus trichocarpa]	0.930	0.666	0.810	4e-33
388496450	134	unknown [Lotus japonicus]	0.930	0.701	0.702	5e-33
388506132	147	unknown [Medicago truncatula]	0.970	0.666	0.663	6e-33
224142908	146	predicted protein [Populus trichocarpa]	0.960	0.664	0.765	9e-33
297793223	138	hypothetical protein ARALYDRAFT_495799 [	0.920	0.673	0.698	2e-32

>gi|356565888|ref|XP_003551168.1| PREDICTED: uncharacterized protein LOC100795083 [Glycine max]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 79/98 (80%)

Query: 4   KAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 63
           ++ DT  R KG+Y LIRDPE+FQ G+YDKPLPCFGCG+GWFSFL GF+ P MW+Y T LY
Sbjct: 42  QSTDTTGRGKGKYALIRDPEDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILY 101

Query: 64  FGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM 101
           FGNH RKDPRERAGL ASAIAA+ CSV  L+I V  ++
Sbjct: 102 FGNHYRKDPRERAGLGASAIAALVCSVTSLIIGVILVL 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497666|gb|AFK36899.1| unknown [Lotus japonicus]

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 77/94 (81%)

Query: 7   DTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGN 66
           D  D +KG+Y LIRDPE+FQ G+YDKPLPCFGCGVGWFSFL GF+ PL+WYY T LYFGN
Sbjct: 37  DATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPLLWYYATILYFGN 96

Query: 67  HCRKDPRERAGLAASAIAAMACSVVMLVIVVFRL 100
           + RKDPRERAGL ASAIAA+ CSV +L+  V  L
Sbjct: 97  YYRKDPRERAGLGASAIAALLCSVALLITGVILL 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558389|ref|XP_003547489.1| PREDICTED: uncharacterized protein LOC100814053 [Glycine max]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 77/92 (83%)

Query: 4   KAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 63
           +A D AD EKG YTLIR PE+FQ G+YDKPLPC+GCG+GWFSFL GF+ P +WYY T LY
Sbjct: 38  QAMDVADHEKGNYTLIRGPEDFQTGLYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILY 97

Query: 64  FGNHCRKDPRERAGLAASAIAAMACSVVMLVI 95
           FGN+ RKDPRERAGL ASAIAA+ CSV +L++
Sbjct: 98  FGNYYRKDPRERAGLGASAIAALICSVALLIV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546063|ref|XP_002514091.1| conserved hypothetical protein [Ricinus communis] gi|223546547|gb|EEF48045.1| conserved hypothetical protein [Ricinus communis]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 87/95 (91%)

Query: 4   KAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 63
           +APD ADREKG+YTL+RD E+FQ GIYDKPLPCFGCGVGWFSFLLGF FPLMWYY TFLY
Sbjct: 44  QAPDGADREKGKYTLLRDSEDFQIGIYDKPLPCFGCGVGWFSFLLGFAFPLMWYYATFLY 103

Query: 64  FGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVF 98
           FGN+ RKDPRERAGLAA+AIAAMA SV++++I+ +
Sbjct: 104 FGNYYRKDPRERAGLAAAAIAAMAFSVLLMIIIAY 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530415|ref|XP_003533777.1| PREDICTED: uncharacterized protein LOC100791750 [Glycine max]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 77/92 (83%)

Query: 4   KAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 63
           +A D AD EKG YTLI+ PE+FQ G+YDKPLPC+GCG+GWFSFL GF+ P +WYY T LY
Sbjct: 38  QAMDVADHEKGNYTLIKGPEDFQTGLYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILY 97

Query: 64  FGNHCRKDPRERAGLAASAIAAMACSVVMLVI 95
           FGN+ RKDPRERAGL ASAIAA+ CSV +L++
Sbjct: 98  FGNYYRKDPRERAGLGASAIAALICSVALLIV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091200|ref|XP_002309204.1| predicted protein [Populus trichocarpa] gi|222855180|gb|EEE92727.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 86/95 (90%), Gaps = 1/95 (1%)

Query: 4   KAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 63
           +A D AD EKG+YTLIRDPE+FQ GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY
Sbjct: 44  QATDAADGEKGKYTLIRDPEDFQ-GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 102

Query: 64  FGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVF 98
           FGN+ R+DPRERAGLAA+AIAAM  SVV++VI  +
Sbjct: 103 FGNYHRRDPRERAGLAAAAIAAMVFSVVLMVIAAY 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496450|gb|AFK36291.1| unknown [Lotus japonicus]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 76/94 (80%)

Query: 7   DTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGN 66
           D  D +KG+Y LIRDPE+FQ G+YDKPLPCFGCGVGWFSFL GF+ P +WYY T LYFGN
Sbjct: 37  DATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGN 96

Query: 67  HCRKDPRERAGLAASAIAAMACSVVMLVIVVFRL 100
           + RKDPRERAGL ASAIAA+ CSV +L+  V  L
Sbjct: 97  YYRKDPRERAGLGASAIAALLCSVALLITGVILL 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506132|gb|AFK41132.1| unknown [Medicago truncatula]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 76/98 (77%)

Query: 4   KAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 63
           +A D     KG+Y L+RDPE+FQ G+YDKPLPCFGCG+GWFSFL GF+ P MW+Y T LY
Sbjct: 42  QAGDPMAHGKGKYALVRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILY 101

Query: 64  FGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM 101
           FGNH RKDPRERAGL ASAIAA+ CSV ML+     L+
Sbjct: 102 FGNHYRKDPRERAGLGASAIAALVCSVGMLIFAAILLL 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142908|ref|XP_002324774.1| predicted protein [Populus trichocarpa] gi|222866208|gb|EEF03339.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%), Gaps = 1/98 (1%)

Query: 1   MVRKAPDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGT 60
           MV +  D  D EKG+YTL+ DPE+FQ GIYDKPLPCFGCG+GWFSFLLGFVFPLMWYYGT
Sbjct: 46  MVGQVTDATDGEKGKYTLVGDPEDFQ-GIYDKPLPCFGCGIGWFSFLLGFVFPLMWYYGT 104

Query: 61  FLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVF 98
           FLYFGN+ RKDPRERAGLAA+AI AM+ SVV+LVI+ +
Sbjct: 105 FLYFGNYYRKDPRERAGLAAAAIGAMSFSVVLLVIIAY 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793223|ref|XP_002864496.1| hypothetical protein ARALYDRAFT_495799 [Arabidopsis lyrata subsp. lyrata] gi|297310331|gb|EFH40755.1| hypothetical protein ARALYDRAFT_495799 [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 76/93 (81%)

Query: 7   DTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGN 66
           D   R K RYTL++D ++ + G YDKPLPCFGCG+GWFSFLLGF+FPL+WYY  FLYFGN
Sbjct: 41  DAMARGKRRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPLLWYYAAFLYFGN 100

Query: 67  HCRKDPRERAGLAASAIAAMACSVVMLVIVVFR 99
           + RKDPRERAGLAASAI AM  S+V+LVI  FR
Sbjct: 101 YYRKDPRERAGLAASAITAMGFSLVLLVIFAFR 133

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2120840	133	AT4G26060 [Arabidopsis thalian	0.851	0.646	0.627	7.1e-29
TAIR|locus:2164620	137	AT5G57060 [Arabidopsis thalian	0.920	0.678	0.580	3.1e-28
TAIR|locus:1006230715	103	AT1G54217 [Arabidopsis thalian	0.900	0.883	0.478	1.3e-20
TAIR|locus:2024847	153	AT1G53560 [Arabidopsis thalian	0.603	0.398	0.371	1.6e-06
TAIR|locus:505006347	132	AT3G14595 [Arabidopsis thalian	0.366	0.280	0.5	5.5e-06
TAIR|locus:2020317	154	AT1G17080 [Arabidopsis thalian	0.445	0.292	0.428	1.9e-05
TAIR|locus:2198269	312	RPL18AA "60S ribosomal protein	0.287	0.092	0.533	9.9e-05

TAIR|locus:2120840 AT4G26060 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 54/86 (62%), Positives = 65/86 (75%)

Query:    13 KGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDP 72
             KGRYTL++D +  + G+YDKPLPCFGCG+GWFSFLLGFVFP +WYY T LYFGN+ RKDP
Sbjct:    45 KGRYTLVKDVDEVENGVYDKPLPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDP 104

Query:    73 RERXXXXXXXXXXXXCSVVMLVIVVF 98
             RER             S+++LVIVVF
Sbjct:   105 RERAGLAASAITAMGFSLLLLVIVVF 130

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2164620 AT5G57060 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 54/93 (58%), Positives = 65/93 (69%)

Query:     7 DTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGN 66
             D   R K RYTL++D ++ + G YDKPLPCFGCG+GWFSFLLGF+FP +WYY  FLYFGN
Sbjct:    40 DAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGN 99

Query:    67 HCRKDPRERXXXXXXXXXXXXCSVVMLVIVVFR 99
             + RKDPRER             S+V+LVI  FR
Sbjct:   100 YYRKDPRERAGLAASAITAMGFSLVLLVIFAFR 132

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019835 "cytolysis" evidence=IEA

GO:0050829 "defense response to Gram-negative bacterium" evidence=IEA

TAIR|locus:1006230715 AT1G54217 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/92 (47%), Positives = 59/92 (64%)

Query:     7 DTADREKGRYTLIRDP-ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFG 65
             D  +++KG+Y LIRD  E+ + G + KPLPCFG G+GWFSFLLGFVFP  WY  TFLY  
Sbjct:     5 DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query:    66 NHCRKDPRERXXXXXXXXXXXXCSVVMLVIVV 97
             ++  +DPRER             SV +++ V+
Sbjct:    65 SYYHRDPRERSGLAASAIAALIFSVALVITVL 96

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024847 AT1G53560 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query:    34 LPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHC-RKDPRERXXXXXXXXXXXXCSVV 91
             LPC G G+GWF F++GF+   + WY G F+     C R DPRE+             +VV
Sbjct:    84 LPCCGLGLGWFLFIIGFLLGAIPWYVGVFILV---CARIDPREKPGYVACTIA----AVV 136

Query:    92 MLVIVVFRLM 101
               + +VF +M
Sbjct:   137 ATITIVFGVM 146

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:505006347 AT3G14595 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    36 CFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRER 75
             C G G+GW  F+LGF F L WY G FL   +   ++PRER
Sbjct:    67 CCGIGIGWVLFILGFFFALPWYIGFFLLLFS---RNPRER 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2020317 AT1G17080 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query:    29 IYDKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLY-FGNHCRKDPRER 75
             +  + LPC G G+GWF F++GF    + WY G F+  FG   R D RE+
Sbjct:    80 VRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGR--RIDYREK 126

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2198269 RPL18AA "60S ribosomal protein L18A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query:    34 LPCFGCGVGWFSFLLGFVFP-LMWYYGTFL 62
             LPC G G+GWF F++GF+F  + WY G F+
Sbjct:    90 LPCCGLGMGWFLFIMGFLFGGIPWYLGAFI 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.152   0.533    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101        89   0.00091  102 3  12 21  0.37    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  496 (53 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.31u 0.15s 7.46t   Elapsed:  00:00:01
  Total cpu time:  7.31u 0.15s 7.46t   Elapsed:  00:00:01
  Start:  Fri May 10 17:46:30 2013   End:  Fri May 10 17:46:31 2013

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0112001901 hypothetical protein (142 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF10251	94	PEN-2: Presenilin enhancer-2 subunit of gamma secr	93.31
PF07787	248	DUF1625: Protein of unknown function (DUF1625); In	81.27

>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex

Probab=93.31  E-value=0.37  Score=33.99  Aligned_cols=49  Identities=31%  Similarity=0.604  Sum_probs=36.8

Q ss_pred             HHHHHHHH-hHHHHHHHHHHhcccccCC------cccchhHHHHHHHHHHHHHHHHH
Q 034218           45 SFLLGFVF-PLMWYYGTFLYFGNHCRKD------PRERAGLAASAIAAMACSVVMLV   94 (101)
Q Consensus        45 lFllGFf~-~ipWY~gafl~~c~~~r~D------~REkpGl~AcaIAa~v~tia~ii   94 (101)
                      .|+.||++ |..|.+-++-++= ...++      ++-|.=.+.|+|.+++.+++++.
T Consensus        13 yf~~GFa~LP~lW~vN~~wF~~-~af~~p~~~~~~~Ir~YVi~SaiG~~vw~v~l~~   68 (94)
T PF10251_consen   13 YFLGGFAFLPFLWLVNVVWFFR-EAFSKPPYDEQPQIRKYVIRSAIGFLVWTVVLIS   68 (94)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899988 7999999876643 22233      36677788999999999887765

It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].

>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species

Probab=81.27  E-value=7.7  Score=29.62  Aligned_cols=55  Identities=13%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             hhHHHHHHHHHHHh--HHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034218           40 GVGWFSFLLGFVFP--LMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM  101 (101)
Q Consensus        40 GiGWflFllGFf~~--ipWY~gafl~~c~~~r~D~REkpGl~AcaIAa~v~tia~ii~~~~~~~  101 (101)
                      .+||++..+||.+-  +.+.+..++++-   +    .-.+..-+.++.++...+.++++++.|+
T Consensus       188 ~~G~llmf~G~~~~~~~l~~l~~~~P~l---g----~l~~~~~~~~~~~~s~~lsl~~Ia~aW~  244 (248)
T PF07787_consen  188 FIGWLLMFIGFFLLFSPLYTLVDWIPLL---G----NLVGFGLFLVAFIISFSLSLLTIALAWL  244 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcee---e----chhhhHHHHHHHHHHHHHHHHHHHHhhe
Confidence            56999999998884  444444455443   2    1344444455544444444555555553

The region in question is approximately 250 residues long.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00