Citrus Sinensis ID: 034236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRILL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATynkwrhpdpyigkcfctgskhrill
Flexible Loop (DISEMBL)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANkhvtdldaidRMIDEAEATynkwrhpdpyigKCFCTGSKHRILL
Low Complexity Region (SEG)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRILL
Disordered region (IsUnstruct)
********AYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGS******
Disordered Region (DISOPRED)
*************RAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRILL
Disordered Region (DISEMBL)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRILL
Disordered Region (DISPRO)
**********VARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRILL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q945M1	117	NADH dehydrogenase [ubiqu	yes	no	0.94	0.803	0.705	3e-32
Q54NR3	106	NADH dehydrogenase [ubiqu	yes	no	0.8	0.754	0.337	1e-06
Q02369	179	NADH dehydrogenase [ubiqu	yes	no	0.78	0.435	0.329	2e-05
Q9CQJ8	179	NADH dehydrogenase [ubiqu	yes	no	0.69	0.385	0.347	7e-05
Q0MQE8	179	NADH dehydrogenase [ubiqu	yes	no	0.78	0.435	0.329	0.0001
Q0MQE9	179	NADH dehydrogenase [ubiqu	N/A	no	0.75	0.418	0.333	0.0002
Q9Y6M9	179	NADH dehydrogenase [ubiqu	yes	no	0.69	0.385	0.347	0.0003
Q0MQF0	179	NADH dehydrogenase [ubiqu	yes	no	0.69	0.385	0.347	0.0003

>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 76/95 (80%), Gaps = 1/95 (1%)

Query: 1  MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVT 60
          MSG +STAAY ARRAAQKERV+ILYRRALKDTLNWAVHRH+FY+DA DLR +F  N+ V 
Sbjct: 1  MSG-VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVE 59

Query: 61 DLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSK 95
          D+D ID++I   EA YNKWRHPDPYI      GSK
Sbjct: 60 DVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSK 94

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). Is required for correct plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54NR3|NDUB9_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%)

Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
          +  ++V  LYR+A+K   +++    +F  +A DLR   +A K+ T+  AI +M+ + E  
Sbjct: 3  SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62

Query: 76 YNKWRHPDPYIGKCFCTGSK 95
           + W HPDPYI      G+K
Sbjct: 63 NSYWEHPDPYIPCDGINGTK 82

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 5  ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
          +S+ AY+      +++V  LY+RAL+   +W +HR  +   A  LR RF+ +K+  D+  
Sbjct: 4  LSSGAYLT----HQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 59

Query: 65 IDRMIDEAEATYNKWRHPDPYI 86
            +++ EAE  +   +HP PYI
Sbjct: 60 ATQLLREAEEEFWHGQHPQPYI 81

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
          +++V  LY+RAL+   +W +HR  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct: 13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72

Query: 78 KWRHPDPYI 86
          + +HP PYI
Sbjct: 73 QNQHPQPYI 81

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 5  ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
          +++ AY+  R    ++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+  
Sbjct: 4  LASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVR 59

Query: 65 IDRMIDEAEATYNKWRHPDPYI 86
            +++ EAE  +   +HP PYI
Sbjct: 60 ATQLLKEAEEEFWYRQHPQPYI 81

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%)

Query: 12 ARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDE 71
           R    +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ E
Sbjct: 7  GRYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKE 66

Query: 72 AEATYNKWRHPDPYI 86
          AE  +   +HP PYI
Sbjct: 67 AEEEFWYRQHPQPYI 81

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
          +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct: 13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query: 78 KWRHPDPYI 86
            +HP PYI
Sbjct: 73 YRQHPQPYI 81

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
          +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct: 13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query: 78 KWRHPDPYI 86
            +HP PYI
Sbjct: 73 YRQHPQPYI 81

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2139619	117	CIB22 "AT4G34700" [Arabidopsis	0.94	0.803	0.705	2e-31
ASPGD|ASPL0000034079	100	AN3467 [Emericella nidulans (t	0.76	0.76	0.434	2.2e-11
CGD|CAL0006170	107	orf19.5547 [Candida albicans (	0.81	0.757	0.361	9.4e-11
UNIPROTKB|Q5AC03	107	CaO19.5547 "Potential mitochon	0.81	0.757	0.361	9.4e-11
DICTYBASE|DDB_G0285021	106	DDB_G0285021 "putative NADH de	0.71	0.669	0.352	5.3e-08
UNIPROTKB|Q02369	179	NDUFB9 "NADH dehydrogenase [ub	0.78	0.435	0.329	1.4e-07
MGI|MGI:1913468	179	Ndufb9 "NADH dehydrogenase (ub	0.69	0.385	0.347	2.9e-07
RGD|1307114	179	Ndufb9 "NADH dehydrogenase (ub	0.69	0.385	0.347	4.8e-07
UNIPROTKB|E7EWZ0	178	NDUFB9 "NADH dehydrogenase [ub	0.69	0.387	0.347	1.6e-06
UNIPROTKB|Q9Y6M9	179	NDUFB9 "NADH dehydrogenase [ub	0.69	0.385	0.347	1.6e-06

TAIR|locus:2139619 CIB22 "AT4G34700" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 67/95 (70%), Positives = 76/95 (80%)

Query:     1 MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVT 60
             MSG +STAAY ARRAAQKERV+ILYRRALKDTLNWAVHRH+FY+DA DLR +F  N+ V 
Sbjct:     1 MSG-VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVE 59

Query:    61 DLDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSK 95
             D+D ID++I   EA YNKWRHPDPYI      GSK
Sbjct:    60 DVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSK 94

GO:0003824 "catalytic activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ASPGD|ASPL0000034079 AN3467 [Emericella nidulans (taxid:162425)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/76 (43%), Positives = 44/76 (57%)

Query:    21 VQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR 80
             V  LYRR+LK  L+WAVHRH++   A  +R  FEANK++ D      ++ E E     W+
Sbjct:     6 VTSLYRRSLKLALDWAVHRHIWRGQAVYIRSLFEANKNIRDPRQQKVLLRETEKLLETWK 65

Query:    81 HPDPYIGKCFCTGSKH 96
             HPDPY       GSK+
Sbjct:    66 HPDPYRAPTAPGGSKY 81

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0006170 orf19.5547 [Candida albicans (taxid:5476)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/83 (36%), Positives = 54/83 (65%)

Query:    16 AQKERVQILYRRALKDTLNWAVHRHLFYKDAD-DLRLRFEANKHVTDLDAIDRMIDEAEA 74
             A  +RV  L+R+AL+   + ++ R   Y+DA  ++R +FEANKH++    ++ +I++ +A
Sbjct:    11 ANSKRVTSLFRQALRTAYDHSM-RWDVYRDATINIRRQFEANKHISSQQELEAVINKTKA 69

Query:    75 TYNKWRHPDPYIGKCFCTGSKHR 97
                +W+HPDPYI  C   G+K++
Sbjct:    70 KLAEWKHPDPYIPPCRPGGTKYQ 92

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AC03 CaO19.5547 "Potential mitochondrial Complex I, LYR_B22_NDUFB9 subunit" [Candida albicans SC5314 (taxid:237561)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/83 (36%), Positives = 54/83 (65%)

Query:    16 AQKERVQILYRRALKDTLNWAVHRHLFYKDAD-DLRLRFEANKHVTDLDAIDRMIDEAEA 74
             A  +RV  L+R+AL+   + ++ R   Y+DA  ++R +FEANKH++    ++ +I++ +A
Sbjct:    11 ANSKRVTSLFRQALRTAYDHSM-RWDVYRDATINIRRQFEANKHISSQQELEAVINKTKA 69

Query:    75 TYNKWRHPDPYIGKCFCTGSKHR 97
                +W+HPDPYI  C   G+K++
Sbjct:    70 KLAEWKHPDPYIPPCRPGGTKYQ 92

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285021 DDB_G0285021 "putative NADH dehydrogenase (ubiquinone) protein 9" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query:    16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
             +  ++V  LYR+A+K   +++    +F  +A DLR   +A K+ T+  AI +M+ + E  
Sbjct:     3 SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62

Query:    76 YNKWRHPDPYI 86
              + W HPDPYI
Sbjct:    63 NSYWEHPDPYI 73

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q02369 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/82 (32%), Positives = 47/82 (57%)

Query:     5 ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
             +S+ AY+  +    ++V  LY+RAL+   +W +HR  +   A  LR RF+ +K+  D+  
Sbjct:     4 LSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 59

Query:    65 IDRMIDEAEATYNKWRHPDPYI 86
               +++ EAE  +   +HP PYI
Sbjct:    60 ATQLLREAEEEFWHGQHPQPYI 81

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

MGI|MGI:1913468 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W +HR  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct:    13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72

Query:    78 KWRHPDPYI 86
             + +HP PYI
Sbjct:    73 QNQHPQPYI 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

RGD|1307114 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W VHR  +   A  +R RFE +K+  D+    +++ +AE  + 
Sbjct:    13 RQKVLRLYKRALRHLESWCVHRDKYRYLACLMRARFEEHKNEKDMMKATQLLRQAEEEFW 72

Query:    78 KWRHPDPYI 86
             + +HP PYI
Sbjct:    73 QNQHPQPYI 81

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E7EWZ0 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct:    13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query:    78 KWRHPDPYI 86
               +HP PYI
Sbjct:    73 YRQHPQPYI 81

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9Y6M9 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct:    13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query:    78 KWRHPDPYI 86
               +HP PYI
Sbjct:    73 YRQHPQPYI 81

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q945M1	NDUB9_ARATH	No assigned EC number	0.7052	0.94	0.8034	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001036301 hypothetical protein (117 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG3466	157	consensus NADH:ubiquinone oxidoreductase, NDUFB9/B	99.97
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.65
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.59
KOG3801	94	consensus Uncharacterized conserved protein BCN92	99.57
KOG4620	80	consensus Uncharacterized conserved protein [Funct	99.35
KOG3426	124	consensus NADH:ubiquinone oxidoreductase, NDUFA6/B	99.32
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	97.63
KOG4100	125	consensus Uncharacterized conserved protein [Funct	96.65
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	91.0

>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]

Probab=99.97  E-value=3.6e-31  Score=185.82  Aligned_cols=91  Identities=44%  Similarity=0.699  Sum_probs=89.3

Q ss_pred             hhHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhCCCCC
Q 034236            6 STAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPY   85 (100)
Q Consensus         6 ~~~~~~~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~Hp~p~   85 (100)
                      |||+++++.++|+++|++|||++||...+|++.|+.+|+.++.||++|++|++ +|..++..||.+|+++|+++.||+||
T Consensus         1 s~a~~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~   79 (157)
T KOG3466|consen    1 STAAYFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPY   79 (157)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            68999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cCCCCCCCcccc
Q 034236           86 IGKCFCTGSKHR   97 (100)
Q Consensus        86 ~~~~~pgG~~y~   97 (100)
                      +||++||||+|+
T Consensus        80 ifp~spGGssy~   91 (157)
T KOG3466|consen   80 IFPDSPGGSSYE   91 (157)
T ss_pred             ccCCCCCCCccc
Confidence            999999999996

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.65  E-value=4.4e-16  Score=93.52  Aligned_cols=57  Identities=25%  Similarity=0.476  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 034236           19 ERVQILYRRALKDTLNWAVH--RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK   78 (100)
Q Consensus        19 ~~Vl~LYR~~LR~~~~~~~~--r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~   78 (100)
                      ++||+|||++||.++.|++.  +..++   ..||++|++|++++||..|+.++.+|++.|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~---~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIR---AEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            57999999999999888754  34443   68999999999999999999999999999975

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.59  E-value=5.3e-15  Score=89.96  Aligned_cols=58  Identities=29%  Similarity=0.501  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 034236           19 ERVQILYRRALKDTLNWAV--HRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKW   79 (100)
Q Consensus        19 ~~Vl~LYR~~LR~~~~~~~--~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~   79 (100)
                      ++||+|||++||++..|++  .+..++   .+||++|++|++++||..|+.++++|+.+|..+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~---~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l   60 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYFR---RRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL   60 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence            4799999999999998874  443443   689999999999999999999999999999875

>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]

Probab=99.57  E-value=9.5e-15  Score=96.22  Aligned_cols=63  Identities=25%  Similarity=0.362  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 034236           15 AAQKERVQILYRRALKDTLNWAV--HRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR   80 (100)
Q Consensus        15 ~~~r~~Vl~LYR~~LR~~~~~~~--~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~   80 (100)
                      +.++++|++|||.+||+++.++.  +|++   ..+++|+.|++|++++||.+|+.++++|+++|+.++
T Consensus         3 ~~sr~qvlsLyr~~lr~s~qfp~YNyReY---~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Levik   67 (94)
T KOG3801|consen    3 MVSRRQVLSLYRNLLRESKQFPQYNYREY---FQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIK   67 (94)
T ss_pred             cccHHHHHHHHHHHHHHHhhCCcccHHHH---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999988764  4444   347999999999999999999999999999999775

>KOG4620 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=4.7e-12  Score=80.62  Aligned_cols=69  Identities=14%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHhhCCCC
Q 034236           13 RRAAQKERVQILYRRALKDTLNWAV-HRHLFYKDADDLRLRFEANKHV--TDLDAIDRMIDEAEATYNKWRHPDP   84 (100)
Q Consensus        13 ~~~~~r~~Vl~LYR~~LR~~~~~~~-~r~~~r~~a~~iR~eFe~nk~v--tD~~~I~~Ll~~G~~~L~~~~Hp~p   84 (100)
                      +....++|||+|||.|||.++..+. +...|.   ..|++||++|+++  +|.-.|+.||..|+++++...||.-
T Consensus         3 rlSgLQrqVlhlYR~~lraa~~Kp~~~~~~~m---~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe~   74 (80)
T KOG4620|consen    3 RLSGLQRQVLHLYRDLLRAARGKPGAEARRWM---AFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPEA   74 (80)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCchHHHHHH---HHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcch
Confidence            4456899999999999999986553 333454   5789999999999  5999999999999999999999964

>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]

Probab=99.32  E-value=5.5e-12  Score=86.28  Aligned_cols=67  Identities=24%  Similarity=0.269  Sum_probs=55.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhhhhhHHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 034236           14 RAAQKERVQILYRRALKDTLNWAVHRHL----FYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR   80 (100)
Q Consensus        14 ~~~~r~~Vl~LYR~~LR~~~~~~~~r~~----~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~   80 (100)
                      ..+.|++|+.|||.+.|....+..+.+.    ..+...+||++|.+|.|+|||.+|+.|+-+|.++|++.-
T Consensus        19 ~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv   89 (124)
T KOG3426|consen   19 LTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIV   89 (124)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHH
Confidence            4579999999999999999876554432    122335899999999999999999999999999998754

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=97.63  E-value=0.00026  Score=46.55  Aligned_cols=56  Identities=20%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhhhhhhHHH------HHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 034236           21 VQILYRRALKDTLNWAVHRHL------FYKDADDL----RLRFEANKHVTDLDAIDRMIDEAEATY   76 (100)
Q Consensus        21 Vl~LYR~~LR~~~~~~~~r~~------~r~~a~~i----R~eFe~nk~vtD~~~I~~Ll~~G~~~L   76 (100)
                      |++|||.+||+.+.++.....      ....-..|    +++|+.+++++|+..+...+.+.+.-+
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~   66 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYA   66 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            799999999999877533210      01112467    999999999997776666666555433

>KOG4100 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.0085  Score=41.39  Aligned_cols=56  Identities=23%  Similarity=0.258  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 034236           17 QKERVQILYRRALKDTLNWAVH-RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATY   76 (100)
Q Consensus        17 ~r~~Vl~LYR~~LR~~~~~~~~-r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L   76 (100)
                      |-.+|.-|||++||.=+--+.. |..--   ..+|+||+.||++ +|..++-.+.+=+.-.
T Consensus         8 ~p~rvrlLYkriLrlHr~lp~~~R~lGD---~YVkdEFrrHk~v-np~~~~~FlteW~~Ya   64 (125)
T KOG4100|consen    8 HPPRVRLLYKRILRLHRGLPAELRALGD---QYVKDEFRRHKTV-NPLEAQGFLTEWERYA   64 (125)
T ss_pred             CcchHHHHHHHHHHHHccCChHHHHHHH---HHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Confidence            4456777999999998765542 33322   3689999999999 8888888877655443

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=91.00  E-value=1.4  Score=26.59  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034236           17 QKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMI   69 (100)
Q Consensus        17 ~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll   69 (100)
                      .+.....||.+.|+....++.+..+.++.-..++.++.--+...|.++|+..|
T Consensus         3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            35677899999999998776543333333347788888878889999988765

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00