Citrus Sinensis ID: 034247


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
MDKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQPYGGGSGDRSNKLETATVAFWIT
cccccccccEEEEccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHEEc
cccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHEEEHHcc
mdkcrmrdltvrasgssdrnvvpiaplqfespVGQLLAQILQTHPHLLPAAIDQQLENiqidknvqredtsqdllyqpygggsgdrsnkleTATVAFWIT
mdkcrmrdltvrasgssdrnvvpIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQPygggsgdrsnkletatvafwit
MDKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQPYGGGSGDRSNKLETATVAFWIT
********************VVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQI*******************************ATVAFW**
***************************QFESPVGQLLAQILQTHPHLLPAAIDQQL******************************SNKLETATVAFWIT
*****************DRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQPYGGGSGDRSNKLETATVAFWIT
*DKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNV*******DLLYQP**GGSGDRSNKLETATVAFWIT
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ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQPYGGGSGDRSNKLETATVAFWIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
224074354 349 predicted protein [Populus trichocarpa] 0.77 0.220 0.721 7e-25
297742031 423 unnamed protein product [Vitis vinifera] 0.75 0.177 0.730 9e-25
225427093 403 PREDICTED: uncharacterized protein LOC10 0.75 0.186 0.730 9e-25
147845137169 hypothetical protein VITISV_014254 [Viti 0.75 0.443 0.717 5e-24
449436852 405 PREDICTED: uncharacterized protein LOC10 0.76 0.187 0.612 5e-20
255555907 408 conserved hypothetical protein [Ricinus 0.75 0.183 0.649 6e-20
115460262 405 Os04g0595100 [Oryza sativa Japonica Grou 0.98 0.241 0.475 5e-17
218195475 420 hypothetical protein OsI_17223 [Oryza sa 0.98 0.233 0.475 6e-17
357484841 410 hypothetical protein MTR_5g028020 [Medic 0.73 0.178 0.592 4e-16
363806784 406 uncharacterized protein LOC100810147 [Gl 0.64 0.157 0.671 5e-16
>gi|224074354|ref|XP_002304357.1| predicted protein [Populus trichocarpa] gi|222841789|gb|EEE79336.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 67/79 (84%), Gaps = 2/79 (2%)

Query: 1  MDKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQ 60
          M KCR R LTVRASG S  N VP++PL+FESPVGQLLAQILQTHPHLLPAAIDQQLEN+Q
Sbjct: 1  MYKCRPRGLTVRASGDSAGNPVPVSPLEFESPVGQLLAQILQTHPHLLPAAIDQQLENLQ 60

Query: 61 IDKNVQRED--TSQDLLYQ 77
           D++ Q+E+  +SQD LY+
Sbjct: 61 TDRDAQKEEAASSQDFLYK 79




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742031|emb|CBI33818.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427093|ref|XP_002276652.1| PREDICTED: uncharacterized protein LOC100260823 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845137|emb|CAN81624.1| hypothetical protein VITISV_014254 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436852|ref|XP_004136206.1| PREDICTED: uncharacterized protein LOC101213975 [Cucumis sativus] gi|449508054|ref|XP_004163203.1| PREDICTED: uncharacterized LOC101213975 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255555907|ref|XP_002518989.1| conserved hypothetical protein [Ricinus communis] gi|223541976|gb|EEF43522.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|115460262|ref|NP_001053731.1| Os04g0595100 [Oryza sativa Japonica Group] gi|32489097|emb|CAE03929.1| OSJNba0093F12.3 [Oryza sativa Japonica Group] gi|58532028|emb|CAD41566.3| OSJNBa0006A01.21 [Oryza sativa Japonica Group] gi|113565302|dbj|BAF15645.1| Os04g0595100 [Oryza sativa Japonica Group] gi|125591491|gb|EAZ31841.1| hypothetical protein OsJ_16003 [Oryza sativa Japonica Group] gi|215695402|dbj|BAG90593.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218195475|gb|EEC77902.1| hypothetical protein OsI_17223 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357484841|ref|XP_003612708.1| hypothetical protein MTR_5g028020 [Medicago truncatula] gi|355514043|gb|AES95666.1| hypothetical protein MTR_5g028020 [Medicago truncatula] Back     alignment and taxonomy information
>gi|363806784|ref|NP_001242537.1| uncharacterized protein LOC100810147 [Glycine max] gi|255642509|gb|ACU21518.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
TAIR|locus:2031760 406 AT1G32160 "AT1G32160" [Arabido 0.71 0.174 0.533 5.3e-15
TAIR|locus:2198055 423 AT1G48450 "AT1G48450" [Arabido 0.65 0.153 0.552 5.7e-14
TAIR|locus:2088490 427 AT3G17800 "AT3G17800" [Arabido 0.63 0.147 0.514 1.1e-11
TAIR|locus:2031760 AT1G32160 "AT1G32160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 196 (74.1 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 40/75 (53%), Positives = 52/75 (69%)

Query:     5 RMRDLTVRASGSSD--RNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQID 62
             R R +TVRASG  D   N  P+AP++ ESPVGQLL QIL+THPHLLP  +D+QLE    +
Sbjct:    57 RGRSVTVRASGDEDSNENFAPLAPVELESPVGQLLEQILRTHPHLLPVTVDEQLEKFAAE 116

Query:    63 KNVQREDTS--QDLL 75
                ++ D+S  QD+L
Sbjct:   117 SESRKADSSSTQDIL 131




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
TAIR|locus:2198055 AT1G48450 "AT1G48450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088490 AT3G17800 "AT3G17800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00015667001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (403 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00