Citrus Sinensis ID: 034247
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 100 | ||||||
| 224074354 | 349 | predicted protein [Populus trichocarpa] | 0.77 | 0.220 | 0.721 | 7e-25 | |
| 297742031 | 423 | unnamed protein product [Vitis vinifera] | 0.75 | 0.177 | 0.730 | 9e-25 | |
| 225427093 | 403 | PREDICTED: uncharacterized protein LOC10 | 0.75 | 0.186 | 0.730 | 9e-25 | |
| 147845137 | 169 | hypothetical protein VITISV_014254 [Viti | 0.75 | 0.443 | 0.717 | 5e-24 | |
| 449436852 | 405 | PREDICTED: uncharacterized protein LOC10 | 0.76 | 0.187 | 0.612 | 5e-20 | |
| 255555907 | 408 | conserved hypothetical protein [Ricinus | 0.75 | 0.183 | 0.649 | 6e-20 | |
| 115460262 | 405 | Os04g0595100 [Oryza sativa Japonica Grou | 0.98 | 0.241 | 0.475 | 5e-17 | |
| 218195475 | 420 | hypothetical protein OsI_17223 [Oryza sa | 0.98 | 0.233 | 0.475 | 6e-17 | |
| 357484841 | 410 | hypothetical protein MTR_5g028020 [Medic | 0.73 | 0.178 | 0.592 | 4e-16 | |
| 363806784 | 406 | uncharacterized protein LOC100810147 [Gl | 0.64 | 0.157 | 0.671 | 5e-16 |
| >gi|224074354|ref|XP_002304357.1| predicted protein [Populus trichocarpa] gi|222841789|gb|EEE79336.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 1 MDKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQ 60
M KCR R LTVRASG S N VP++PL+FESPVGQLLAQILQTHPHLLPAAIDQQLEN+Q
Sbjct: 1 MYKCRPRGLTVRASGDSAGNPVPVSPLEFESPVGQLLAQILQTHPHLLPAAIDQQLENLQ 60
Query: 61 IDKNVQRED--TSQDLLYQ 77
D++ Q+E+ +SQD LY+
Sbjct: 61 TDRDAQKEEAASSQDFLYK 79
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742031|emb|CBI33818.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|225427093|ref|XP_002276652.1| PREDICTED: uncharacterized protein LOC100260823 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|147845137|emb|CAN81624.1| hypothetical protein VITISV_014254 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449436852|ref|XP_004136206.1| PREDICTED: uncharacterized protein LOC101213975 [Cucumis sativus] gi|449508054|ref|XP_004163203.1| PREDICTED: uncharacterized LOC101213975 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255555907|ref|XP_002518989.1| conserved hypothetical protein [Ricinus communis] gi|223541976|gb|EEF43522.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|115460262|ref|NP_001053731.1| Os04g0595100 [Oryza sativa Japonica Group] gi|32489097|emb|CAE03929.1| OSJNba0093F12.3 [Oryza sativa Japonica Group] gi|58532028|emb|CAD41566.3| OSJNBa0006A01.21 [Oryza sativa Japonica Group] gi|113565302|dbj|BAF15645.1| Os04g0595100 [Oryza sativa Japonica Group] gi|125591491|gb|EAZ31841.1| hypothetical protein OsJ_16003 [Oryza sativa Japonica Group] gi|215695402|dbj|BAG90593.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|218195475|gb|EEC77902.1| hypothetical protein OsI_17223 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
| >gi|357484841|ref|XP_003612708.1| hypothetical protein MTR_5g028020 [Medicago truncatula] gi|355514043|gb|AES95666.1| hypothetical protein MTR_5g028020 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|363806784|ref|NP_001242537.1| uncharacterized protein LOC100810147 [Glycine max] gi|255642509|gb|ACU21518.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 100 | ||||||
| TAIR|locus:2031760 | 406 | AT1G32160 "AT1G32160" [Arabido | 0.71 | 0.174 | 0.533 | 5.3e-15 | |
| TAIR|locus:2198055 | 423 | AT1G48450 "AT1G48450" [Arabido | 0.65 | 0.153 | 0.552 | 5.7e-14 | |
| TAIR|locus:2088490 | 427 | AT3G17800 "AT3G17800" [Arabido | 0.63 | 0.147 | 0.514 | 1.1e-11 |
| TAIR|locus:2031760 AT1G32160 "AT1G32160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 5 RMRDLTVRASGSSD--RNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQID 62
R R +TVRASG D N P+AP++ ESPVGQLL QIL+THPHLLP +D+QLE +
Sbjct: 57 RGRSVTVRASGDEDSNENFAPLAPVELESPVGQLLEQILRTHPHLLPVTVDEQLEKFAAE 116
Query: 63 KNVQREDTS--QDLL 75
++ D+S QD+L
Sbjct: 117 SESRKADSSSTQDIL 131
|
|
| TAIR|locus:2198055 AT1G48450 "AT1G48450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088490 AT3G17800 "AT3G17800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00015667001 | SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (403 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00