Citrus Sinensis ID: 034253


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
MAYLLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEARRQARGTESA
ccHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHccccc
ccHHHHHHHHHHccccccccccccccccccEccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccc
MAYLLKTSIASHLRSHTQEKREDAlsrrgyhvelgprekalladdpvlkRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEARRQARGTESA
MAYLLKTSiashlrshtqekredalsrrgyhvelgprekalladdpvlkrfkshkksvwrlkrmgdvLTIVVVAGCCYEIYVKAVMREEarrqargtesa
MAYLLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEARRQARGTESA
***************************************ALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVM**************
*AY****************************VELGPREKALLADDPVLKRFKSH*K**WRLKRMGDVLTIVVVAGCCYEIYVK*****************
MAYLLKTSIASH*************SRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMRE************
***************************RGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEAR*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAYLLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEARRQARGTESA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
359491609102 PREDICTED: uncharacterized protein LOC10 0.99 0.970 0.757 9e-36
224119246117 predicted protein [Populus trichocarpa] 0.95 0.811 0.731 6e-34
118482384100 unknown [Populus trichocarpa] gi|1184896 0.95 0.95 0.731 8e-34
224133448102 predicted protein [Populus trichocarpa] 0.96 0.941 0.735 3e-32
449440710101 PREDICTED: uncharacterized protein LOC10 0.94 0.930 0.718 2e-31
44944071298 PREDICTED: uncharacterized protein LOC10 0.94 0.959 0.718 2e-31
255540773101 conserved hypothetical protein [Ricinus 0.94 0.930 0.711 2e-30
29781597297 hypothetical protein ARALYDRAFT_906015 [ 0.95 0.979 0.68 8e-29
38849975095 unknown [Medicago truncatula] 0.93 0.978 0.642 4e-26
1842460699 uncharacterized protein [Arabidopsis tha 0.9 0.909 0.652 3e-25
>gi|359491609|ref|XP_002283556.2| PREDICTED: uncharacterized protein LOC100255301 [Vitis vinifera] gi|297733832|emb|CBI15079.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 88/103 (85%), Gaps = 4/103 (3%)

Query: 1   MAYLLKTSIA-SHLRSHTQEKREDA--LSRRGYHVELGPREKALLADDPVLKRFKSHKKS 57
           MA+LL  + A SH RSH+Q K ED+  LSRRG+HVE GPREKALLAD+P LKRFKSHK++
Sbjct: 1   MAFLLNKATALSHFRSHSQ-KTEDSFSLSRRGFHVEPGPREKALLADNPSLKRFKSHKRN 59

Query: 58  VWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEARRQARGTESA 100
           VWRLKR+GDVLTIVVVAGCCYEIYVKAVMREEAR+QA   E A
Sbjct: 60  VWRLKRVGDVLTIVVVAGCCYEIYVKAVMREEARKQAAANEIA 102




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119246|ref|XP_002318023.1| predicted protein [Populus trichocarpa] gi|222858696|gb|EEE96243.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118482384|gb|ABK93115.1| unknown [Populus trichocarpa] gi|118489648|gb|ABK96625.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224133448|ref|XP_002321570.1| predicted protein [Populus trichocarpa] gi|222868566|gb|EEF05697.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440710|ref|XP_004138127.1| PREDICTED: uncharacterized protein LOC101212374 isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449440712|ref|XP_004138128.1| PREDICTED: uncharacterized protein LOC101212374 isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255540773|ref|XP_002511451.1| conserved hypothetical protein [Ricinus communis] gi|223550566|gb|EEF52053.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297815972|ref|XP_002875869.1| hypothetical protein ARALYDRAFT_906015 [Arabidopsis lyrata subsp. lyrata] gi|297321707|gb|EFH52128.1| hypothetical protein ARALYDRAFT_906015 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388499750|gb|AFK37941.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|18424606|ref|NP_568957.1| uncharacterized protein [Arabidopsis thaliana] gi|21592610|gb|AAM64559.1| unknown [Arabidopsis thaliana] gi|332010243|gb|AED97626.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
TAIR|locus:505006710100 SDH7 "AT5G62575" [Arabidopsis 0.9 0.9 0.720 2.1e-29
TAIR|locus:50500638893 SDH7 "AT3G47833" [Arabidopsis 0.89 0.956 0.720 1.9e-28
TAIR|locus:505006710 SDH7 "AT5G62575" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 67/93 (72%), Positives = 79/93 (84%)

Query:     1 MAYLLKT-SIASHLRSHTQEKREDALS--RRGYHVELGPREKALLADDPVLKRFKSHKKS 57
             MA+LL   SI+SHLRS + +K  DALS  RRG+H+E G REKALLA+D  LKRFKSHKKS
Sbjct:     1 MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query:    58 VWRLKRMGDVLTIVVVAGCCYEIYVKAVMREEA 90
             V +LKR+GDVLT+VVVAGCCYEIYVKAVM++EA
Sbjct:    61 VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEA 93




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005739 "mitochondrion" evidence=IDA
GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA
GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA
TAIR|locus:505006388 SDH7 "AT3G47833" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00016151001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (102 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00