Citrus Sinensis ID: 034282

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
mpykemagHCEALLIGKQKKMSHLMSAQLRQESLINFSitnhenevdnpltderitpnsnkppvgtvttqcaseyqhhpqyfrlpasspydnflkaagc
Flexible Loop (DISEMBL)
MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHEnevdnpltderitpnsnkpPVGTVTTQCASEYQHHPQYfrlpasspydNFLKAAGC
Low Complexity Region (SEG)
MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC
Disordered region (IsUnstruct)
**********EALLI*******************I*********************************************YF*****************
Disordered Region (DISOPRED)
*PYKE*AGHCEALLIGKQKKMSHLMS**************************************************HHPQYFRLPASSPYDNFLKAAGC
Disordered Region (DISEMBL)
********HCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC
Disordered Region (DISPRO)
MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQ**L********************************VTTQCASE*QHHPQYFRLPASSPYDNFLKAAGC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
224138038	1020	predicted protein [Populus trichocarpa]	1.0	0.097	0.627	7e-32
255577465	985	conserved hypothetical protein [Ricinus	1.0	0.100	0.588	1e-29
118486459	97	unknown [Populus trichocarpa]	0.949	0.969	0.628	3e-29
297739675	1195	unnamed protein product [Vitis vinifera]	1.0	0.082	0.559	6e-29
225441793	1017	PREDICTED: uncharacterized protein LOC10	1.0	0.097	0.559	7e-29
449437968	1002	PREDICTED: uncharacterized protein LOC10	0.979	0.096	0.602	2e-27
255553538	1025	conserved hypothetical protein [Ricinus	0.969	0.093	0.526	5e-22
110737205	1025	hypothetical protein [Arabidopsis thalia	0.979	0.094	0.482	5e-21
42569848	1025	uncharacterized protein [Arabidopsis tha	0.979	0.094	0.482	5e-21
2335096	961	hypothetical protein [Arabidopsis thalia	0.979	0.100	0.482	6e-21

>gi|224138038|ref|XP_002322714.1| predicted protein [Populus trichocarpa] gi|222867344|gb|EEF04475.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 79/102 (77%), Gaps = 3/102 (2%)

Query: 1    MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE---VDNPLTDERITP 57
            + YKEMA HCE LL+GKQ+KMSH+MS QL+QESL+N S+ NH++E   V NP  ++ I  
Sbjct: 919  VSYKEMAHHCETLLMGKQQKMSHVMSVQLKQESLMNVSLQNHDDEIRKVTNPFLEQNIIA 978

Query: 58   NSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            +   P VGTV  QC +EYQHHP +FRLPASSP+DNFLKAAGC
Sbjct: 979  SPQLPLVGTVQMQCGAEYQHHPNFFRLPASSPFDNFLKAAGC 1020

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577465|ref|XP_002529611.1| conserved hypothetical protein [Ricinus communis] gi|223530896|gb|EEF32756.1| conserved hypothetical protein [Ricinus communis]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 77/102 (75%), Gaps = 3/102 (2%)

Query: 1   MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEV---DNPLTDERITP 57
           +PYKEMA HCE LL+GKQKKMS++++AQ++Q+ L+N +  NH  EV    NP  D+  T 
Sbjct: 884 VPYKEMALHCETLLMGKQKKMSNVINAQMKQDILVNITQQNHNEEVMKAGNPFIDQNFTA 943

Query: 58  NSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
           N  K  +G +  QCA+EYQHHP +FRLPASSPYD+FLKAAGC
Sbjct: 944 NPQKLSIGAIPIQCATEYQHHPNFFRLPASSPYDHFLKAAGC 985

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486459|gb|ABK95069.1| unknown [Populus trichocarpa]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 75/97 (77%), Gaps = 3/97 (3%)

Query: 6  MAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE---VDNPLTDERITPNSNKP 62
          MA HCE LL+GKQ+KMSH+MS QL+QESL+N S+ NH++E   V NP  ++ I  +   P
Sbjct: 1  MAHHCETLLMGKQQKMSHVMSVQLKQESLMNVSLQNHDDEIRKVTNPFLEQNIIASPQLP 60

Query: 63 PVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
           VGTV  QC +EYQHHP +FRLPASSP+DNFLKAAGC
Sbjct: 61 LVGTVQMQCGAEYQHHPNFFRLPASSPFDNFLKAAGC 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739675|emb|CBI29857.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 78/109 (71%), Gaps = 10/109 (9%)

Query: 1    MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE----------VDNPL 50
            + YKEM+GHCEALL+GKQ+KMS+L+S Q +Q SL+NFS  NH++E          V NP 
Sbjct: 1087 VSYKEMSGHCEALLMGKQQKMSNLISTQQKQVSLMNFSSQNHDDEAKKMITHCYDVRNPF 1146

Query: 51   TDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            +D+    N +KPP+      CA+EY HHP +F+LPASSPYDNFLKAAGC
Sbjct: 1147 SDQNFAANLHKPPIDPAPIHCATEYLHHPHFFKLPASSPYDNFLKAAGC 1195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441793|ref|XP_002277870.1| PREDICTED: uncharacterized protein LOC100255472 [Vitis vinifera]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 78/109 (71%), Gaps = 10/109 (9%)

Query: 1    MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE----------VDNPL 50
            + YKEM+GHCEALL+GKQ+KMS+L+S Q +Q SL+NFS  NH++E          V NP 
Sbjct: 909  VSYKEMSGHCEALLMGKQQKMSNLISTQQKQVSLMNFSSQNHDDEAKKMITHCYDVRNPF 968

Query: 51   TDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            +D+    N +KPP+      CA+EY HHP +F+LPASSPYDNFLKAAGC
Sbjct: 969  SDQNFAANLHKPPIDPAPIHCATEYLHHPHFFKLPASSPYDNFLKAAGC 1017

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437968|ref|XP_004136762.1| PREDICTED: uncharacterized protein LOC101210251 [Cucumis sativus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 2    PYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPLTDERITPNSNK 61
            P+KEMA HCE LL+GKQ+KMS LM +Q +QE+++  S+ N ENEV NP   E  T NS++
Sbjct: 906  PFKEMAQHCELLLMGKQQKMSSLMCSQQKQETVMLVSLQNQENEVGNPFI-EHFTANSHR 964

Query: 62   PPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            PP+G + T C +EYQ     FRLPASSPYDNFLKAAGC
Sbjct: 965  PPLGQIVTPCVTEYQCQTHSFRLPASSPYDNFLKAAGC 1002

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553538|ref|XP_002517810.1| conserved hypothetical protein [Ricinus communis] gi|223543082|gb|EEF44617.1| conserved hypothetical protein [Ricinus communis]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 70/112 (62%), Gaps = 16/112 (14%)

Query: 1    MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHEN-------------EVD 47
            +PY EMAGHCEAL  GK KKMS L+S+Q RQE +I   I  +EN             +  
Sbjct: 917  LPYIEMAGHCEALSAGKHKKMSALLSSQQRQEGVIR--IPAYENNQEKQSSSDFPFQQRG 974

Query: 48   NPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            NP  D+   PN+  P   T    CA+EYQHH Q+F+LPASSPYDNFLKAAGC
Sbjct: 975  NPFLDQNFGPNAYLPSATTGPLLCATEYQHH-QFFQLPASSPYDNFLKAAGC 1025

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737205|dbj|BAF00551.1| hypothetical protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 17/114 (14%)

Query: 3    YKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE----------------- 45
            YKEM  HCE LL+GKQ+K+S L+++QLR ES +N S   H+ E                 
Sbjct: 912  YKEMTLHCENLLMGKQQKISSLLNSQLRHESSVNCSPRQHDEEIKIASFHPMINSAFHTG 971

Query: 46   VDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            V+ PL  +     S + PVGT+ + C +E Q++PQ FRLPASSPYDNFLKAAGC
Sbjct: 972  VEVPLLSKEFDMKSPRTPVGTIQSPCYAELQNNPQAFRLPASSPYDNFLKAAGC 1025

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569848|ref|NP_181714.3| uncharacterized protein [Arabidopsis thaliana] gi|330254943|gb|AEC10037.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 17/114 (14%)

Query: 3    YKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE----------------- 45
            YKEM  HCE LL+GKQ+K+S L+++QLR ES +N S   H+ E                 
Sbjct: 912  YKEMTLHCENLLMGKQQKISSLLNSQLRHESSVNCSPRQHDEEIKIASFHPMINSAFHTG 971

Query: 46   VDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
            V+ PL  +     S + PVGT+ + C +E Q++PQ FRLPASSPYDNFLKAAGC
Sbjct: 972  VEVPLLSKEFDMKSPRTPVGTIQSPCYAELQNNPQAFRLPASSPYDNFLKAAGC 1025

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2335096|gb|AAC02765.1| hypothetical protein [Arabidopsis thaliana]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 17/114 (14%)

Query: 3   YKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENE----------------- 45
           YKEM  HCE LL+GKQ+K+S L+++QLR ES +N S   H+ E                 
Sbjct: 848 YKEMTLHCENLLMGKQQKISSLLNSQLRHESSVNCSPRQHDEEIKIASFHPMINSAFHTG 907

Query: 46  VDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
           V+ PL  +     S + PVGT+ + C +E Q++PQ FRLPASSPYDNFLKAAGC
Sbjct: 908 VEVPLLSKEFDMKSPRTPVGTIQSPCYAELQNNPQAFRLPASSPYDNFLKAAGC 961

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2054416	1025	AT2G41830 [Arabidopsis thalian	0.545	0.052	0.574	1.6e-21
TAIR|locus:2178953	1025	AT5G21080 "AT5G21080" [Arabido	0.969	0.093	0.385	2.2e-11
TAIR|locus:2198846	1003	AT1G05960 "AT1G05960" [Arabido	0.959	0.094	0.415	1.8e-09

TAIR|locus:2054416 AT2G41830 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query:    46 VDNPLTDERITPNSNKPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKAAGC 99
             V+ PL  +     S + PVGT+ + C +E Q++PQ FRLPASSPYDNFLKAAGC
Sbjct:   972 VEVPLLSKEFDMKSPRTPVGTIQSPCYAELQNNPQAFRLPASSPYDNFLKAAGC 1025

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2178953 AT5G21080 "AT5G21080" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 37/96 (38%), Positives = 51/96 (53%)

Query:     1 MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPLTDERITPNSN 60
             M Y EMAGHCEALL+GKQ+KMS + +   +  S              NP  D+R +    
Sbjct:   923 MTYTEMAGHCEALLMGKQEKMSFMSAKSNKFSSSQTKEAVALPCSGGNPFVDQRSSWEMM 982

Query:    61 KPPVGTVTTQCASEYQHHPQYFRLPASSPYDNFLKA 96
                    +  C +EYQ+ P +F  P+S+P+DNFL A
Sbjct:   983 GLGAPAASNICVTEYQNQPPFFNPPSSTPFDNFLTA 1018

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198846 AT1G05960 "AT1G05960" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 44/106 (41%), Positives = 56/106 (52%)

Query:     1 MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSITNHENEVDNPL----TDERIT 56
             +PY +M   CEAL+ GKQ+KMS L S + +       +IT+ +NE D       T+E   
Sbjct:   902 VPYDQMMNQCEALVTGKQQKMSVLRSFKPQATK----AITSEDNEKDEQYLLKETEEAGE 957

Query:    57 PNSNKPPVGTVTTQCASEY--QHHPQY-FRLPASSPYDNFLKAAGC 99
              +     V  V  Q    +  Q  PQ  FRLP SSPYD FLKAAGC
Sbjct:   958 DDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGC 1003


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       99        99   0.00091  102 3  11 23  0.42    30
                                                     29  0.46    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  527 (56 KB)
  Total size of DFA:  115 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.18u 0.14s 12.32t   Elapsed:  00:00:01
  Total cpu time:  12.18u 0.14s 12.32t   Elapsed:  00:00:01
  Start:  Fri May 10 20:05:39 2013   End:  Fri May 10 20:05:40 2013

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVI0424 SubName- Full=Putative uncharacterized protein; (1020 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG1877	819	consensus Putative transmembrane protein cmp44E [G	98.27

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]

Probab=98.27  E-value=4e-07  Score=81.11  Aligned_cols=79  Identities=35%  Similarity=0.329  Sum_probs=58.0

Q ss_pred             CChHHHHHHHHHhhhhhhhhhhHHhhhhhhhhhhccccC-CCCc-----CCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 034282            1 MPYKEMAGHCEALLIGKQKKMSHLMSAQLRQESLINFSI-TNHE-----NEVDNPLTDERITPNSNKPPVGTVTTQCASE   74 (99)
Q Consensus         1 vpY~eMasqCEAL~~GKQQKMS~lmSf~~~~~~~~~~~~-~~~e-----~~~~Np~~~~~~~~~~~~~~~~~~~~~~~~~   74 (99)
                      |+|++|+.| |++++|||||+|  ++     ..+..++. ..++     .+.+|+..|.++.........+.++..|.++
T Consensus       735 vs~~~~~~~-e~~~~~~~q~~~--~~-----~~s~~~s~~~~~~~~~r~~s~~~~~~d~~Ls~~l~~t~~~~~~~~~~~~  806 (819)
T KOG1877|consen  735 VSIDQMDAH-EATLSGKQQKRS--RS-----LTSSTFSPSPFDEFLARTTSGENLNEDFRLSRELAPTLVRRGQITRSTE  806 (819)
T ss_pred             CCHHHHhhH-HHHhhhhhhhcc--cc-----ccccccCcCchHHHHhhccCCCCchhhhhHHHHHhhccCCCCCCccccc
Confidence            689999999 999999999999  11     11111111 1111     3378888887777777756677888899988


Q ss_pred             cccCCCcccCCCCCcchhhhhc
Q 034282           75 YQHHPQYFRLPASSPYDNFLKA   96 (99)
Q Consensus        75 ~q~~~~~frLP~sSPYDnFLKA   96 (99)
                      ++         +|+|||||++|
T Consensus       807 ~~---------~s~~~~~~~~~  819 (819)
T KOG1877|consen  807 LQ---------ASSPKDNFETA  819 (819)
T ss_pred             cc---------cCCCcchhhcC
Confidence            87         99999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00