Citrus Sinensis ID: 034297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITKI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHcHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEccccccccHEHHcccccHcccc
Coil and Loop (DISEMBL)
MQEKDWLSLVAVHSDSWLLAVAFYFGarfgfgknERKKLFQMINDLPTIFEvvtgnakqpkdpyllnpfsgsrilrnfsgrcgSSWRWLQRNLKLITKI
Flexible Loop (DISEMBL)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVtgnakqpkdpYLLNPFSGSRILRnfsgrcgsswrwlqrnlklitki
Low Complexity Region (SEG)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITKI
Disordered region (IsUnstruct)
*****WLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLI***
Disordered Region (DISOPRED)
***KDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE************************************************
Disordered Region (DISEMBL)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITKI
Disordered Region (DISPRO)
**EKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGN***************SRILRNFS*RCGSSWRWLQRNLKL****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q8LA16	252	PHD finger protein ALFIN-	yes	no	0.626	0.246	0.919	1e-28
Q8S8M9	256	PHD finger protein ALFIN-	no	no	0.737	0.285	0.808	4e-28
Q40359	257	PHD finger protein Alfin1	N/A	no	0.626	0.241	0.887	2e-27
Q6YTY3	278	PHD finger protein ALFIN-	yes	no	0.585	0.208	0.827	4e-23
B8B8C5	277	PHD finger protein ALFIN-	N/A	no	0.585	0.209	0.827	4e-23
Q2R837	254	PHD finger protein ALFIN-	no	no	0.595	0.232	0.813	1e-22
B8BJV8	254	PHD finger protein ALFIN-	N/A	no	0.595	0.232	0.813	1e-22
A2WXR5	272	PHD finger protein ALFIN-	N/A	no	0.595	0.216	0.779	7e-22
Q7F2Z1	272	PHD finger protein ALFIN-	no	no	0.595	0.216	0.779	7e-22
Q60DW3	258	PHD finger protein ALFIN-	no	no	0.595	0.228	0.796	1e-21

>sp|Q8LA16|ALFL7_ARATH PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 85  MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query: 61  KD 62
           KD
Sbjct: 145 KD 146

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8M9|ALFL6_ARATH PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 66/73 (90%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWLL+VAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GNAKQ 
Sbjct: 85  MQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNAKQS 144

Query: 61  KDPYLLNPFSGSR 73
           KD  + N  S S+
Sbjct: 145 KDLSVNNNNSKSK 157

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQMINDLPT+FE+ TG AKQ 
Sbjct: 86  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQS 145

Query: 61  KD 62
           KD
Sbjct: 146 KD 147

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes (By similarity). Transcriptional regulator that binds specifically to DNA sequences 5'-GNGGTG-3' or 5'-GTGGNG-3', including promoter elements of the salt-inducible PRP2 gene. Plays a role in salinity tolerance.

Medicago sativa (taxid: 3879)

>sp|Q6YTY3|ALFL9_ORYSJ PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica GN=Os07g0608400 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 55/58 (94%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK 58
           MQEKDWLS+VAVHSD+WLL+VAFYFGARFGF KN+RK+LF MINDLPTIFEVV+G +K
Sbjct: 83  MQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLFGMINDLPTIFEVVSGKSK 140

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8B8C5|ALFL9_ORYSI PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica GN=OsI_26819 PE=3 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 55/58 (94%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK 58
           MQEKDWLS+VAVHSD+WLL+VAFYFGARFGF KN+RK+LF MINDLPTIFEVV+G +K
Sbjct: 83  MQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLFGMINDLPTIFEVVSGKSK 140

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2R837|ALFL8_ORYSJ PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           M EKDWLSLVAVHSD+WLLAVAFYFGARFGF K  RK+LF MIN+LPTI+EVVTG AK+
Sbjct: 83  MDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINNLPTIYEVVTGTAKK 141

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BJV8|ALFL8_ORYSI PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           M EKDWLSLVAVHSD+WLLAVAFYFGARFGF K  RK+LF MIN+LPTI+EVVTG AK+
Sbjct: 83  MDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINNLPTIYEVVTGTAKK 141

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A2WXR5|ALFL6_ORYSI PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. indica GN=OsI_04717 PE=3 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 53/59 (89%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           M EKDWL+LVAVHSDSWLL+VAFYFGARFGF +  R++LF MIN+LPTIFEVVTG AK+
Sbjct: 103 MNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLFNMINNLPTIFEVVTGAAKK 161

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7F2Z1|ALFL6_ORYSJ PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. japonica GN=Os01g0887700 PE=2 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 53/59 (89%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           M EKDWL+LVAVHSDSWLL+VAFYFGARFGF +  R++LF MIN+LPTIFEVVTG AK+
Sbjct: 103 MNEKDWLALVAVHSDSWLLSVAFYFGARFGFDREARRRLFNMINNLPTIFEVVTGAAKK 161

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60DW3|ALFL5_ORYSJ PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. japonica GN=Os05g0419100 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           M EKDWL+LVAVHSDSWLLAVAFYF ARFGF K  R++LF MIN+LPTIFEVVTG AK+
Sbjct: 87  MNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVVTGAAKK 145

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
224070730	254	predicted protein [Populus trichocarpa]	0.898	0.350	0.673	6e-28
427199375	252	PHD5 [Morella rubra]	0.626	0.246	0.951	1e-27
224129826	254	predicted protein [Populus trichocarpa]	0.898	0.350	0.663	2e-27
333696835	253	PHD finger family protein [Corylus heter	0.747	0.292	0.824	2e-27
15223786	252	protein alfin-like 7 [Arabidopsis thalia	0.626	0.246	0.919	5e-27
297849860	252	PHD finger family protein [Arabidopsis l	0.626	0.246	0.919	6e-27
7262694	273	Contains similarity to an Alfalfa nuclei	0.626	0.227	0.919	6e-27
255556677	367	ATP synthase alpha subunit mitochondrial	0.898	0.242	0.653	7e-27
351726166	252	PHD5 [Glycine max] gi|115394656|gb|ABI97	0.626	0.246	0.935	8e-27
7527732	165	T5E21.1 [Arabidopsis thaliana]	0.626	0.375	0.919	8e-27

>gi|224070730|ref|XP_002303216.1| predicted protein [Populus trichocarpa] gi|222840648|gb|EEE78195.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 72/98 (73%), Gaps = 9/98 (9%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GN KQP
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNVKQP 144

Query: 61  KDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITK 98
           KD              N SG+  SS +   R  +  TK
Sbjct: 145 KD---------QSATHNNSGKSKSSGKMQSRQPESQTK 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199375|gb|AFY26897.1| PHD5 [Morella rubra]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/62 (95%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFEVVTGN KQP
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEVVTGNVKQP 144

Query: 61  KD 62
           KD
Sbjct: 145 KD 146

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129826|ref|XP_002328812.1| predicted protein [Populus trichocarpa] gi|222839110|gb|EEE77461.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 71/98 (72%), Gaps = 9/98 (9%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFE V+GN KQP
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEAVSGNVKQP 144

Query: 61  KDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITK 98
           KD              N SG+  SS +   R  +  TK
Sbjct: 145 KD---------QTATHNNSGKSKSSGKMQSRQPESQTK 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333696835|gb|AEF79998.1| PHD finger family protein [Corylus heterophylla]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 65/74 (87%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGN KQ 
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKQS 144

Query: 61  KDPYLLNPFSGSRI 74
           KD    +  S S++
Sbjct: 145 KDQSATHNSSKSKL 158

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223786|ref|NP_172903.1| protein alfin-like 7 [Arabidopsis thaliana] gi|75245845|sp|Q8LA16.1|ALFL7_ARATH RecName: Full=PHD finger protein ALFIN-LIKE 7; Short=Protein AL7 gi|21593666|gb|AAM65633.1| nucleic acid binding protein (alfin-1), putative [Arabidopsis thaliana] gi|30017229|gb|AAP12848.1| At1g14510 [Arabidopsis thaliana] gi|110736110|dbj|BAF00027.1| hypothetical protein [Arabidopsis thaliana] gi|332191052|gb|AEE29173.1| protein alfin-like 7 [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 85  MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query: 61  KD 62
           KD
Sbjct: 145 KD 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849860|ref|XP_002892811.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297338653|gb|EFH69070.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 85  MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query: 61  KD 62
           KD
Sbjct: 145 KD 146

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7262694|gb|AAF43952.1|AC012188_29 Contains similarity to an Alfalfa nucleic acid binding protein from Medicago sativa gb|L07291.1 and contains a PHD-finger PF|00628 domain. ESTs gb|AI995787, gb|AA721930, gb|T42258 come from this gene [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 106 MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 165

Query: 61  KD 62
           KD
Sbjct: 166 KD 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556677|ref|XP_002519372.1| ATP synthase alpha subunit mitochondrial, putative [Ricinus communis] gi|223541439|gb|EEF42989.1| ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 71/98 (72%), Gaps = 9/98 (9%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GN KQ 
Sbjct: 198 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNVKQA 257

Query: 61  KDPYLLNPFSGSRILRNFSGRCGSSWRWLQRNLKLITK 98
           KD              N SG+  S+ +   R  +  TK
Sbjct: 258 KD---------QSATHNNSGKSKSTGKMQSRQPEPPTK 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726166|ref|NP_001237885.1| PHD5 [Glycine max] gi|115394656|gb|ABI97244.1| PHD5 [Glycine max]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMINDLPTIFE+VTG+AKQ 
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSAKQS 144

Query: 61  KD 62
           KD
Sbjct: 145 KD 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7527732|gb|AAF63181.1|AC010657_17 T5E21.1 [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 85  MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query: 61  KD 62
           KD
Sbjct: 145 KD 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2012577	252	AL7 "AT1G14510" [Arabidopsis t	0.626	0.246	0.919	1.3e-27
TAIR|locus:2056281	256	AL6 "AT2G02470" [Arabidopsis t	0.737	0.285	0.808	4.5e-27
UNIPROTKB|Q40359	257	ALFIN-1 "PHD finger protein Al	0.848	0.326	0.705	9.4e-27
TAIR|locus:2179709	255	AL4 "AT5G26210" [Arabidopsis t	0.858	0.333	0.636	1.6e-22
TAIR|locus:2149867	260	AL5 "AT5G20510" [Arabidopsis t	0.767	0.292	0.620	3e-21
TAIR|locus:2099321	250	AL3 "AT3G42790" [Arabidopsis t	0.616	0.244	0.725	2.1e-20
TAIR|locus:2074663	246	AL2 "AT3G11200" [Arabidopsis t	0.595	0.239	0.709	1.7e-18
TAIR|locus:2169707	241	AL1 "AT5G05610" [Arabidopsis t	0.898	0.369	0.526	2.2e-18

TAIR|locus:2012577 AL7 "AT1G14510" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct:    85 MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query:    61 KD 62
             KD
Sbjct:   145 KD 146

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

TAIR|locus:2056281 AL6 "AT2G02470" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 59/73 (80%), Positives = 66/73 (90%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQEKDW+SLVAVHSDSWLL+VAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GNAKQ 
Sbjct:    85 MQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNAKQS 144

Query:    61 KDPYLLNPFSGSR 73
             KD  + N  S S+
Sbjct:   145 KDLSVNNNNSKSK 157

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q40359 ALFIN-1 "PHD finger protein Alfin1" [Medicago sativa (taxid:3879)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 60/85 (70%), Positives = 67/85 (78%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQMINDLPT+FE+ TG AKQ 
Sbjct:    86 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQS 145

Query:    61 KDPYLLNPFSGSRILRNFSGRCGSS 85
             KD    +  +GS      SG+   S
Sbjct:   146 KDQLTAHN-NGSNSKYKSSGKSRQS 169

GO:0003677 "DNA binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0071472 "cellular response to salt stress" evidence=IDA

TAIR|locus:2179709 AL4 "AT5G26210" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/88 (63%), Positives = 65/88 (73%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-Q 59
             M EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G AK Q
Sbjct:    85 MAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQ 144

Query:    60 PKDPYLLNPFSGSRILRNFSGRCGSSWR 87
              KD   ++  S +R     S + GS  R
Sbjct:   145 GKDKSSVSNNSSNR--SKSSSKRGSESR 170

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2149867 AL5 "AT5G20510" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQ 59
             MQE++WLSLVAVHSD+WLL+V+FYFG+RFGF + +RK+LF MIN++PT++EVVTGNA KQ
Sbjct:    86 MQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRADRKRLFSMINEVPTVYEVVTGNAEKQ 145

Query:    60 PKD-PYLLNPFSGSRILRN 77
              K+ P   N  +G+R   N
Sbjct:   146 TKEMPSSANQ-NGNRSKSN 163

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2099321 AL3 "AT3G42790" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/62 (72%), Positives = 54/62 (87%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             + EK+WLSLVA+HSD+WLL+V+FYFG+RF F K ERK+LF MIND+PTIFEVVTG AK  
Sbjct:    86 LSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKA- 144

Query:    61 KD 62
             KD
Sbjct:   145 KD 146

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2074663 AL2 "AT3G11200" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 44/62 (70%), Positives = 51/62 (82%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQ KDWLSLVAVHSD WLL+V+FYFGAR    +NERK+LF +INDLPT+F+VVTG  K  
Sbjct:    86 MQRKDWLSLVAVHSDCWLLSVSFYFGARLN--RNERKRLFSLINDLPTLFDVVTGR-KAM 142

Query:    61 KD 62
             KD
Sbjct:   143 KD 144

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

TAIR|locus:2169707 AL1 "AT5G05610" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 50/95 (52%), Positives = 66/95 (69%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQ KDWLSLVAVHSD WLL+V+ YFGAR    +NERK+LF +INDLPT+FEVVTG  K  
Sbjct:    84 MQRKDWLSLVAVHSDCWLLSVSSYFGARLN--RNERKRLFSLINDLPTLFEVVTGR-KPI 140

Query:    61 KD--PYL-LNPFSGSRILRNFSGRCGSSWRWLQRN 92
             KD  P + L   S + + R+  G+  S+ + ++ +
Sbjct:   141 KDGKPSMDLGSKSRNGVKRSIEGQTKSTPKLMEES 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       99        99   0.00091  102 3  11 22  0.49    29
                                                     29  0.46    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  132 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.54u 0.12s 11.66t   Elapsed:  00:00:01
  Total cpu time:  11.54u 0.12s 11.66t   Elapsed:  00:00:01
  Start:  Fri May 10 20:23:16 2013   End:  Fri May 10 20:23:17 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LA16	ALFL7_ARATH	No assigned EC number	0.9193	0.6262	0.2460	yes	no
Q6YTY3	ALFL9_ORYSJ	No assigned EC number	0.8275	0.5858	0.2086	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
pfam12165	137	pfam12165, DUF3594, Domain of unknown function (DU	1e-37

>gnl|CDD|221449 pfam12165, DUF3594, Domain of unknown function (DUF3594)

 Score =  123 bits (309), Expect = 1e-37
 Identities = 50/59 (84%), Positives = 56/59 (94%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           MQEKDWLSLVAVHSDSWLL+VAFYFGARFGF +N+RK+LF MINDLPT+FEVVTG AK+
Sbjct: 76  MQEKDWLSLVAVHSDSWLLSVAFYFGARFGFNRNDRKRLFSMINDLPTVFEVVTGAAKK 134

This presumed domain is functionally uncharacterized.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00628. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PF12165	137	DUF3594: Domain of unknown function (DUF3594); Int	100.0
KOG1632	345	consensus Uncharacterized PHD Zn-finger protein [G	99.04

>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=2.2e-40  Score=243.87  Aligned_cols=62  Identities=82%  Similarity=1.342  Sum_probs=60.8

Q ss_pred             CcccchhhHhhhhhhhHHHHHHHHhhhhcCCChhHHHHHHHHhhcCcchhhhhhcCCcCCCC
Q 034297            1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKD   62 (99)
Q Consensus         1 M~RkDWLSLVAVHSDsWLlsVAFyfGArlgfd~~eRkrLF~mINdLPTV~EvVtg~~~k~~~   62 (99)
                      |+|+||||||||||||||||||||||||||||+++|+|||+|||+||||||+|+|+++||.|
T Consensus        76 M~r~dWLslVAvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~Evv~g~~~~q~k  137 (137)
T PF12165_consen   76 MQRKDWLSLVAVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFEVVTGRAKKQSK  137 (137)
T ss_pred             ccHHHHHHHHHHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHHHHhccccccCC
Confidence            89999999999999999999999999999999999999999999999999999999999876

This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.

>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]

Probab=99.04  E-value=3.4e-11  Score=96.76  Aligned_cols=58  Identities=48%  Similarity=0.591  Sum_probs=55.5

Q ss_pred             CcccchhhHhhhhhhhHHHHHHHHhhhhc-----CCChhHHHHHHHHhhcCcchhhhhhcCCc
Q 034297            1 MQEKDWLSLVAVHSDSWLLAVAFYFGARF-----GFGKNERKKLFQMINDLPTIFEVVTGNAK   58 (99)
Q Consensus         1 M~RkDWLSLVAVHSDsWLlsVAFyfGArl-----gfd~~eRkrLF~mINdLPTV~EvVtg~~~   58 (99)
                      |+.+|||+++++|+|+|+.+++||||+++     ++.+.+|+|++.++|+.|||+|+++|.+.
T Consensus       117 ~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~t~~~~~~~~~~  179 (345)
T KOG1632|consen  117 MSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEKNDDPTVFEVVSGTAT  179 (345)
T ss_pred             hhhhccceeecccccccccccccccCCccccccccchhhhhhhhhhhhcccchhhhccccccc
Confidence            67899999999999999999999999998     89999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00