Citrus Sinensis ID: 034306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPHQQLPPRRPACTSGRDNHHD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHccccccccccccccccccEEEccHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
madynrgqdfyssqdheaastekkygglvpkkkplisqdnghaffdsADWALykqgagvnqnSLVAIETLrpklqrtphqqlpprrpactsgrdnhhd
Flexible Loop (DISEMBL)
madynrgqdfyssqdheaastekkygglvpkkKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKlqrtphqqlpprrpactsgrdnhhd
Low Complexity Region (SEG)
MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPHQQLPPRRPACTSGRDNHHD
Disordered region (IsUnstruct)
***************************************NGHAFFDSADWALYKQGAGVNQNSLVAIET*****************************
Disordered Region (DISOPRED)
******************************KKKPLISQDNGHAFFDSADWAL**********************************************
Disordered Region (DISEMBL)
************************YGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQ***********************
Disordered Region (DISPRO)
****************EAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQ*******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPHQQLPPRRPACTSGRDNHHD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
225431892	99	PREDICTED: uncharacterized protein LOC10	0.969	0.959	0.802	2e-37
255556318	96	conserved hypothetical protein [Ricinus	0.938	0.958	0.815	9e-37
357449043	170	hypothetical protein MTR_2g034750 [Medic	0.938	0.541	0.731	4e-34
351726672	90	uncharacterized protein LOC100527098 [Gl	0.857	0.933	0.741	4e-29
224111908	98	predicted protein [Populus trichocarpa]	1.0	1.0	0.755	5e-29
21592601	102	unknown [Arabidopsis thaliana]	0.948	0.911	0.645	6e-29
26453128	102	unknown protein [Arabidopsis thaliana] g	0.948	0.911	0.645	6e-29
18414599	102	cAMP-regulated phosphoprotein 19-related	0.948	0.911	0.634	4e-28
297800546	102	hypothetical protein ARALYDRAFT_355149 [	0.948	0.911	0.623	2e-27
356529247	93	PREDICTED: uncharacterized protein LOC10	0.918	0.967	0.673	2e-27

>gi|225431892|ref|XP_002276228.1| PREDICTED: uncharacterized protein LOC100255126 isoform 2 [Vitis vinifera] gi|225431894|ref|XP_002276205.1| PREDICTED: uncharacterized protein LOC100255126 isoform 1 [Vitis vinifera] gi|225431896|ref|XP_002276251.1| PREDICTED: uncharacterized protein LOC100255126 isoform 3 [Vitis vinifera] gi|296083275|emb|CBI22911.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/96 (80%), Positives = 83/96 (86%), Gaps = 1/96 (1%)

Query: 1  MADYNRGQDFY-SSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGV 59
          MAD NRG  F+ SSQDHEA S  KKYGGL PKKKPLIS+DN  AFFDSADWAL KQGAG+
Sbjct: 1  MADCNRGDGFFPSSQDHEATSEVKKYGGLAPKKKPLISKDNERAFFDSADWALCKQGAGM 60

Query: 60 NQNSLVAIETLRPKLQRTPHQQLPPRRPACTSGRDN 95
          NQ S VA+ETLRPKLQRTPHQ+LPPRRPACTSGRD+
Sbjct: 61 NQKSTVAVETLRPKLQRTPHQRLPPRRPACTSGRDS 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556318|ref|XP_002519193.1| conserved hypothetical protein [Ricinus communis] gi|223541508|gb|EEF43057.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 80/92 (86%)

Query: 1  MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVN 60
          MAD NR +DFY+SQD EAAS  KKY GL PKKKPLIS+D+  AFFDSADWAL KQGAGVN
Sbjct: 1  MADCNRNEDFYASQDLEAASMTKKYDGLKPKKKPLISKDHERAFFDSADWALCKQGAGVN 60

Query: 61 QNSLVAIETLRPKLQRTPHQQLPPRRPACTSG 92
          Q S VA+ETLRPKLQRTPHQQLPPRRPACTSG
Sbjct: 61 QKSTVAVETLRPKLQRTPHQQLPPRRPACTSG 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449043|ref|XP_003594797.1| hypothetical protein MTR_2g034750 [Medicago truncatula] gi|355483845|gb|AES65048.1| hypothetical protein MTR_2g034750 [Medicago truncatula]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)

Query: 1   MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVN 60
           MA++NR ++++++ + E+ S  KKYGGLVPKKKPLIS+DN  AFFDSADWAL KQGAG+N
Sbjct: 68  MAEFNR-EEYFAANNIESTSVGKKYGGLVPKKKPLISKDNERAFFDSADWALCKQGAGMN 126

Query: 61  QNSLVAIETLRPKLQRTPHQQLPPRRPACTSGR 93
           Q S  A+ETLRPKLQRTPHQQLPPRRPACTSGR
Sbjct: 127 QQSTAAVETLRPKLQRTPHQQLPPRRPACTSGR 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726672|ref|NP_001238670.1| uncharacterized protein LOC100527098 [Glycine max] gi|255631550|gb|ACU16142.1| unknown [Glycine max]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 1/85 (1%)

Query: 8  QDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAI 67
          +D++S+ + E  S E KYG L PKKKPLIS+DN  AFFDSADWAL KQGAGVNQ S   +
Sbjct: 7  EDYFSAPNAETTS-EGKYGRLAPKKKPLISKDNERAFFDSADWALCKQGAGVNQQSTATV 65

Query: 68 ETLRPKLQRTPHQQLPPRRPACTSG 92
          ETLRPKLQRTPHQQLPPRRPACTSG
Sbjct: 66 ETLRPKLQRTPHQQLPPRRPACTSG 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111908|ref|XP_002316020.1| predicted protein [Populus trichocarpa] gi|222865060|gb|EEF02191.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 79/98 (80%)

Query: 1  MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVN 60
          MAD N  ++FY SQD EAAS  KKYGGL PKKKPLIS+D+  AFFDSADWAL KQGAGVN
Sbjct: 1  MADCNSSENFYGSQDIEAASATKKYGGLAPKKKPLISKDHERAFFDSADWALCKQGAGVN 60

Query: 61 QNSLVAIETLRPKLQRTPHQQLPPRRPACTSGRDNHHD 98
          Q S VAIETLRPKLQRTPH  LPPRRPACTSG +   D
Sbjct: 61 QKSTVAIETLRPKLQRTPHHPLPPRRPACTSGSNAGLD 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592601|gb|AAM64550.1| unknown [Arabidopsis thaliana]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 70/93 (75%)

Query: 3  DYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQN 62
          D NR  DF  SQ  E+ S   KYGGLVPKKKPLIS+D+  AFFDSADWAL KQ A ++Q 
Sbjct: 4  DCNRVNDFLFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQR 63

Query: 63 SLVAIETLRPKLQRTPHQQLPPRRPACTSGRDN 95
          ++ AIE LRPKLQRTP +QLPPRRP C +G +N
Sbjct: 64 TIAAIEKLRPKLQRTPRKQLPPRRPTCATGNEN 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26453128|dbj|BAC43640.1| unknown protein [Arabidopsis thaliana] gi|28416781|gb|AAO42921.1| At4g16146 [Arabidopsis thaliana]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 70/93 (75%)

Query: 3  DYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQN 62
          D NR  DF  SQ  E+ S   KYGGLVPKKKPLIS+D+  AFFDSADWAL KQGA ++Q 
Sbjct: 4  DCNRVNDFLFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQGASIDQR 63

Query: 63 SLVAIETLRPKLQRTPHQQLPPRRPACTSGRDN 95
          ++ AIE LRPKLQRTP +QL PRRP C +G +N
Sbjct: 64 TIAAIEKLRPKLQRTPRKQLSPRRPTCATGNEN 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414599|ref|NP_567486.1| cAMP-regulated phosphoprotein 19-related protein [Arabidopsis thaliana] gi|332658302|gb|AEE83702.1| cAMP-regulated phosphoprotein 19-related protein [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 69/93 (74%)

Query: 3  DYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQN 62
          D NR  DF  SQ  E+ S   KYGGLVPKKKPLIS+D+  AFFDSADWAL KQ A ++Q 
Sbjct: 4  DCNRVNDFLFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQR 63

Query: 63 SLVAIETLRPKLQRTPHQQLPPRRPACTSGRDN 95
          ++ AIE LRPKLQRTP +QL PRRP C +G +N
Sbjct: 64 TIAAIEKLRPKLQRTPRKQLSPRRPTCATGNEN 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800546|ref|XP_002868157.1| hypothetical protein ARALYDRAFT_355149 [Arabidopsis lyrata subsp. lyrata] gi|297313993|gb|EFH44416.1| hypothetical protein ARALYDRAFT_355149 [Arabidopsis lyrata subsp. lyrata]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 67/93 (72%)

Query: 3  DYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQN 62
          D NR  DF  SQ  E+ S   KY GLVPKKKPLIS+D+  AFFDSADWAL KQ A ++Q 
Sbjct: 4  DCNRADDFLFSQQQESTSGANKYEGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQR 63

Query: 63 SLVAIETLRPKLQRTPHQQLPPRRPACTSGRDN 95
           + AIE LRPK QRTP ++LPPRRP C +G DN
Sbjct: 64 PIAAIEKLRPKFQRTPRKELPPRRPTCATGHDN 96

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529247|ref|XP_003533207.1| PREDICTED: uncharacterized protein LOC100813896 isoform 1 [Glycine max]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 5/95 (5%)

Query: 1  MADYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYK---QGA 57
          MA Y++ +D++S+ + E  +   KYG L PKKKPLIS++N  AFFDSADWAL K   QGA
Sbjct: 1  MAGYDK-EDYFSAPNAET-TCAGKYGRLAPKKKPLISKNNERAFFDSADWALCKSQQQGA 58

Query: 58 GVNQNSLVAIETLRPKLQRTPHQQLPPRRPACTSG 92
          GVNQ S  A+ETLRPKLQRTPHQQLPPRRPACTSG
Sbjct: 59 GVNQQSTTAVETLRPKLQRTPHQQLPPRRPACTSG 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:505006476	102	AT4G16146 "AT4G16146" [Arabido	0.948	0.911	0.634	1e-27
TAIR|locus:2007191	137	AT1G69510 "AT1G69510" [Arabido	0.765	0.547	0.564	2e-15
TAIR|locus:2164376	140	AT5G64130 "AT5G64130" [Arabido	0.5	0.35	0.509	4.9e-14

TAIR|locus:505006476 AT4G16146 "AT4G16146" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 59/93 (63%), Positives = 69/93 (74%)

Query:     3 DYNRGQDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQN 62
             D NR  DF  SQ  E+ S   KYGGLVPKKKPLIS+D+  AFFDSADWAL KQ A ++Q 
Sbjct:     4 DCNRVNDFLFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQR 63

Query:    63 SLVAIETLRPKLQRTPHQQLPPRRPACTSGRDN 95
             ++ AIE LRPKLQRTP +QL PRRP C +G +N
Sbjct:    64 TIAAIEKLRPKLQRTPRKQLSPRRPTCATGNEN 96

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2007191 AT1G69510 "AT1G69510" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 44/78 (56%), Positives = 52/78 (66%)

Query:    15 DHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKL 74
             + E  + +KKYGGL+PKK PLIS+D+  AFFDSADWAL KQ     Q     +E LRPKL
Sbjct:    24 ESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADWALGKQKG---QKPKGPLEALRPKL 80

Query:    75 QRTPHQQLPPRRPACTSG 92
             Q TP QQ   RR A +SG
Sbjct:    81 QPTPQQQPRARRMAYSSG 98

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164376 AT5G64130 "AT5G64130" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 27/53 (50%), Positives = 32/53 (60%)

Query:    37 SQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPHQQLPPRRPAC 89
             +QD+  A+FDSADWAL KQG    +  L   E LRPKLQ T  QQ   R+  C
Sbjct:    72 NQDHERAYFDSADWALGKQGVAKPKGPL---EALRPKLQPT-QQQTRYRKSPC 120

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam04667	87	pfam04667, Endosulfine, cAMP-regulated phosphoprot	9e-22

>gnl|CDD|147027 pfam04667, Endosulfine, cAMP-regulated phosphoprotein/endosulfine conserved region

 Score = 81.0 bits (200), Expect = 9e-22
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 8  QDFYSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAI 67
              SS   +    +KKYG L PKK PL  +     +FDS D+AL K G   +Q+    +
Sbjct: 1  NIDLSSLSPQELKIKKKYGKLPPKKDPLQKKLQERKYFDSGDYALAKAGGSTSQDPKGPL 60

Query: 68 ETLRPKLQRTPH-QQLPPRRPACTSG 92
            LRPKLQ  P  ++   RR    S 
Sbjct: 61 GGLRPKLQNPPQLKESIARRRTSGSA 86

Conserved region found in both cAMP-regulated phosphoprotein 19 (ARPP-19) and Alpha/Beta endosulfine. No function has yet been assigned to ARPP-19. Endosulfine is the endogenous ligand for the ATP-dependent potassium (K ATP) channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism. In both cases the region occupies the majority of the protein. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF04667	86	Endosulfine: cAMP-regulated phosphoprotein/endosul	99.95
KOG4076	121	consensus Regulator of ATP-sensitive K+ channels A	99.82

>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1

Probab=99.95  E-value=3.9e-28  Score=165.15  Aligned_cols=81  Identities=41%  Similarity=0.548  Sum_probs=73.4

Q ss_pred             CCCchHHHHHHHHHhCCCCCCCCccccccccccccchhhHHHHhhcCCCCCCchhhhhhcCCCCCCCCC-CCCCCCCCCc
Q 034306           11 YSSQDHEAASTEKKYGGLVPKKKPLISQDNGHAFFDSADWALYKQGAGVNQNSLVAIETLRPKLQRTPH-QQLPPRRPAC   89 (98)
Q Consensus        11 ~~s~~~eE~~l~~KYG~L~pKK~~Li~K~~eRkyFDSaD~aL~Kag~~~~q~~~~~~e~l~pKl~~Tp~-q~lp~Rr~~~   89 (98)
                      .++..+||++|++|||+|++++..|++++++|||||||||||+||++.+++.+. +++.+.|++.+|++ +++++|+++|
T Consensus         4 ~~~~~~eE~kl~~kYG~l~~~~~~L~kkl~~rKYFDSgDyam~Ka~~~~~~~~~-~~~~~~~~~~~p~~v~~~~~~~~~~   82 (86)
T PF04667_consen    4 ISSLSEEEAKLKAKYGKLPPKKKLLQKKLQKRKYFDSGDYAMAKAGKKSSQGPG-PTGKLPPPLPNPPHVSQSIPRRPTT   82 (86)
T ss_pred             cccccHHHHHHHHHcCCCCCCchhhhhhhccccccchHHHHHHHhhcccccCcC-cCcCCCCCCCCCcccccccCCCCCC
Confidence            456778999999999999998777888899999999999999999998777655 88999999999998 9999999999


Q ss_pred             ccC
Q 034306           90 TSG   92 (98)
Q Consensus        90 ~s~   92 (98)
                      +|+
T Consensus        83 ~s~   85 (86)
T PF04667_consen   83 TSP   85 (86)
T ss_pred             CCC
Confidence            986

No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].

>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=5e-21  Score=138.24  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHhCCCCCCCCccccc-cccccccchhhHHHHhhcCCCCCCchhhhhh--cCC-CCCCCCCCCCCCCCCCc
Q 034306           14 QDHEAASTEKKYGGLVPKKKPLISQ-DNGHAFFDSADWALYKQGAGVNQNSLVAIET--LRP-KLQRTPHQQLPPRRPAC   89 (98)
Q Consensus        14 ~~~eE~~l~~KYG~L~pKK~~Li~K-~~eRkyFDSaD~aL~Kag~~~~q~~~~~~e~--l~p-Kl~~Tp~q~lp~Rr~~~   89 (98)
                      +.++|.++++.||+|+-+++-|.++ +++|||||||||||.|||+.+.+.+.+...+  +.+ .+++|| +.+|.||++.
T Consensus        31 ~epkl~~ky~~~GklP~~sd~l~krlQkgrKyFDSGDYam~KAk~~~~~~~~~~~~k~~~~t~~~~~~~-e~~p~rk~S~  109 (121)
T KOG4076|consen   31 EEPKLKKKYPSYGKLPGGSDFLRKRLQKGRKYFDSGDYAMAKAKMKNKQLPTANPDKNNLPTGDHIPTP-EDLPARKPSL  109 (121)
T ss_pred             hCHHHHHHHHHhCCCCcccHHHHHHHHhcccccccchHHHHHhhcccccCCccccccCCCCCCCCCcCc-cccccccccc
Confidence            3456788888999999886555565 8889999999999999999999988876555  333 899999 8999999999


Q ss_pred             ccCCCCC
Q 034306           90 TSGRDNH   96 (98)
Q Consensus        90 ~s~~~~~   96 (98)
                      .+.+.++
T Consensus       110 ~s~~~~~  116 (121)
T KOG4076|consen  110 VSPSANG  116 (121)
T ss_pred             cCCCccc
Confidence            9976654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00