Citrus Sinensis ID: 034370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MYDTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSLGESLEGIRGSFDY
Secondary Structure (PSIPRED)
ccccccEEEcccHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccHHHHEEEEEEcccccccHHccccHHHHHHHHHHHccHHHHHHHHccccccccccEEEEcHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mydtdevvfcplFSLFCLVcfdwisglwgpqckssmiakencalrclsptcyefvyesdpleegekdFVRSQEFKYCMHKLSlgeslegirgsfdy
Flexible Loop (DISEMBL)
MYDTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHklslgeslegirgsfdy
Low Complexity Region (SEG)
MYDTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSLGESLEGIRGSFDY
Disordered region (IsUnstruct)
*****EVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLE***KDFVRSQEFKYCMHKLSL*************
Disordered Region (DISOPRED)
**DTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYC*******************
Disordered Region (DISEMBL)
MYDTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSLGESLEGIRGSFDY
Disordered Region (DISPRO)
*YDTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSL*******R*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYDTDEVVFCPLFSLFCLVCFDWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSLGESLEGIRGSFDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
225463830	130	PREDICTED: uncharacterized protein LOC10	0.781	0.576	0.813	7e-29
388500094	126	unknown [Lotus japonicus]	0.822	0.626	0.775	1e-28
351722446	120	uncharacterized protein LOC100305858 pre	0.802	0.641	0.756	2e-28
351721336	120	uncharacterized protein LOC100306537 pre	0.760	0.608	0.780	3e-28
118485548	129	unknown [Populus trichocarpa]	0.770	0.573	0.783	5e-28
118489353	129	unknown [Populus trichocarpa x Populus d	0.770	0.573	0.783	6e-28
224126111	115	predicted protein [Populus trichocarpa]	0.760	0.634	0.780	2e-27
449432364	131	PREDICTED: uncharacterized protein LOC10	0.781	0.572	0.773	4e-27
297807783	120	hypothetical protein ARALYDRAFT_488628 [	0.760	0.608	0.794	7e-27
51970570	121	unknown protein [Arabidopsis thaliana]	0.791	0.628	0.779	1e-26

>gi|225463830|ref|XP_002264489.1| PREDICTED: uncharacterized protein LOC100248442 [Vitis vinifera] gi|296088754|emb|CBI38204.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 68/75 (90%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG QCKSS+IAKENC L+CLSP CYE VYESDPLEEGEKDF RSQE+KYCMH+L
Sbjct: 56  DIESGLWGWQCKSSVIAKENCVLQCLSPPCYELVYESDPLEEGEKDFTRSQEYKYCMHRL 115

Query: 82  SLGESLEGIRGSFDY 96
           SLGESL+G++GSFDY
Sbjct: 116 SLGESLDGVKGSFDY 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500094|gb|AFK38113.1| unknown [Lotus japonicus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%), Gaps = 1/80 (1%)

Query: 18  LVCF-DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKY 76
           L C+ D  S LWG QCKSSMIA+ENCALRCLSP CYE +Y+SDPLEEGEKDF+RSQE+KY
Sbjct: 47  LQCYADIDSLLWGWQCKSSMIARENCALRCLSPACYEVIYQSDPLEEGEKDFIRSQEYKY 106

Query: 77  CMHKLSLGESLEGIRGSFDY 96
           CMHKLSLGES+EG+RGSF +
Sbjct: 107 CMHKLSLGESIEGVRGSFGH 126

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722446|ref|NP_001237756.1| uncharacterized protein LOC100305858 precursor [Glycine max] gi|255626795|gb|ACU13742.1| unknown [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 69/78 (88%), Gaps = 1/78 (1%)

Query: 18  LVCF-DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKY 76
           L C+ D   GLWG  CKS+MIA+ENCALRCLSP CYE +YESDPLEEGEKDF+RSQE+KY
Sbjct: 41  LQCYADIDRGLWGWSCKSTMIARENCALRCLSPACYELIYESDPLEEGEKDFIRSQEYKY 100

Query: 77  CMHKLSLGESLEGIRGSF 94
           CMHKLS+GESLEG++G+F
Sbjct: 101 CMHKLSMGESLEGVKGAF 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721336|ref|NP_001236438.1| uncharacterized protein LOC100306537 precursor [Glycine max] gi|255628813|gb|ACU14751.1| unknown [Glycine max]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 67/73 (91%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG  CKS++IA+ENCALRCLSP CYE +YESDPLEEGEKDF+RSQE+KYCMHKL
Sbjct: 46  DIDSGLWGWSCKSTVIARENCALRCLSPACYELIYESDPLEEGEKDFIRSQEYKYCMHKL 105

Query: 82  SLGESLEGIRGSF 94
           S+GESLEG++G+F
Sbjct: 106 SMGESLEGVKGAF 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485548|gb|ABK94626.1| unknown [Populus trichocarpa]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 66/74 (89%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG QCK+SM AKENCAL+CLSP CYE +YESDPLEEGEKDF RSQE+KYCM+K 
Sbjct: 55  DIESGLWGQQCKTSMTAKENCALKCLSPICYELIYESDPLEEGEKDFTRSQEYKYCMYKK 114

Query: 82  SLGESLEGIRGSFD 95
           S+GESLEGI+G+FD
Sbjct: 115 SMGESLEGIKGAFD 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489353|gb|ABK96481.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 66/74 (89%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG QCK+SM AKENCAL+CLSP CYE +YESDPLEEGEKDF RSQE+KYCM+K 
Sbjct: 55  DIESGLWGQQCKTSMTAKENCALKCLSPICYELIYESDPLEEGEKDFTRSQEYKYCMYKK 114

Query: 82  SLGESLEGIRGSFD 95
           S+GESLEGI+G+FD
Sbjct: 115 SVGESLEGIKGAFD 128

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126111|ref|XP_002319758.1| predicted protein [Populus trichocarpa] gi|222858134|gb|EEE95681.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 65/73 (89%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG QCK+SM AKENCAL+CLSP CYE +YESDPLEEGEKDF RSQE+KYCM+K 
Sbjct: 43  DIESGLWGQQCKTSMTAKENCALKCLSPICYELIYESDPLEEGEKDFTRSQEYKYCMYKK 102

Query: 82  SLGESLEGIRGSF 94
           S+GESLEGI+G+F
Sbjct: 103 SMGESLEGIKGAF 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432364|ref|XP_004133969.1| PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus] gi|449487558|ref|XP_004157686.1| PREDICTED: uncharacterized protein LOC101226734 [Cucumis sativus]

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 65/75 (86%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG QC+SS   KENCALRCLSPTCY+ VY SDPLEEGEKD  RSQE+KYC++KL
Sbjct: 57  DIESGLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYKL 116

Query: 82  SLGESLEGIRGSFDY 96
           S+GESLEGI+GSFDY
Sbjct: 117 SMGESLEGIKGSFDY 131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807783|ref|XP_002871775.1| hypothetical protein ARALYDRAFT_488628 [Arabidopsis lyrata subsp. lyrata] gi|297317612|gb|EFH48034.1| hypothetical protein ARALYDRAFT_488628 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 22  DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKL 81
           D  SGLWG QCKSS IAKENCALRCLSP CY+ +YESDPLEEGEKD +RSQE+KYCM+K 
Sbjct: 48  DIESGLWGWQCKSSAIAKENCALRCLSPVCYQLIYESDPLEEGEKDLIRSQEYKYCMYKS 107

Query: 82  SLGESLEGIRGSF 94
           SLGESL+G+RGSF
Sbjct: 108 SLGESLDGVRGSF 120

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970570|dbj|BAD43977.1| unknown protein [Arabidopsis thaliana]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 67/77 (87%), Gaps = 1/77 (1%)

Query: 19  VCF-DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYC 77
           VC+ D  SGLWG QCKSS IAKENCALRCLSP CY+ +YESDPLEEGEKD +RSQE+KYC
Sbjct: 45  VCYGDIESGLWGWQCKSSAIAKENCALRCLSPVCYQLIYESDPLEEGEKDLIRSQEYKYC 104

Query: 78  MHKLSLGESLEGIRGSF 94
           M+K SLGESLEG+RG F
Sbjct: 105 MYKSSLGESLEGVRGIF 121

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2151426	121	AT5G17610 "AT5G17610" [Arabido	0.781	0.619	0.776	3.4e-29

TAIR|locus:2151426 AT5G17610 "AT5G17610" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query:    20 CF-DWISGLWGPQCKSSMIAKENCALRCLSPTCYEFVYESDPLEEGEKDFVRSQEFKYCM 78
             C+ D  SGLWG QCKSS IAKENCALRCLSP CY+ +YESDPLEEGEKD +RSQE+KYCM
Sbjct:    46 CYGDIESGLWGWQCKSSAIAKENCALRCLSPVCYQLIYESDPLEEGEKDLIRSQEYKYCM 105

Query:    79 HKLSLGESLEGIRGSF 94
             +K SLGESLEG+RG F
Sbjct:   106 YKSSLGESLEGVRGIF 121


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.478    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.48    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.21u 0.10s 11.31t   Elapsed:  00:00:00
  Total cpu time:  11.21u 0.10s 11.31t   Elapsed:  00:00:00
  Start:  Fri May 10 22:33:33 2013   End:  Fri May 10 22:33:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00