Citrus Sinensis ID: 034396

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MAWVLITDRGLKMMSNSLNSRDHRRSLPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE
Secondary Structure (PSIPRED)
cEEEEEEcccHHHHHcccccHHHcccccccccccccccccccccHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccHHHcccccccccHccccccccEEccccccccccccHHEEccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAWVLITDRGLKmmsnslnsrdhrrslpdidyldthgttssdgmssflrhggwtwgggnlssMSASVstlgdsgwLIHVQSILAGSAWIAAQIALE
Flexible Loop (DISEMBL)
mawvlitdrglkmmsnslnsrdhrrslPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE
Low Complexity Region (SEG)
MAWVLITDRGLKMMSNSLNSRDHRRSLPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE
Disordered region (IsUnstruct)
**WVLIT**************************************SFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIA**
Disordered Region (DISOPRED)
*AWVLITDRGLKM***************DIDYLDTH***************GWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIAL*
Disordered Region (DISEMBL)
MAWVLITDRGLKMMSNSLNSRDHRRSLPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE
Disordered Region (DISPRO)
MAWVLITDRGLKMM***********SLPDIDYLDTHG*T****MSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAWVLITDRGLKMMSNSLNSRDHRRSLPDIDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
255586601	854	phosphoprotein phosphatase, putative [Ri	0.687	0.077	0.924	1e-28
449441816	857	PREDICTED: LOW QUALITY PROTEIN: myotubul	0.687	0.077	0.909	3e-28
449516121	709	PREDICTED: myotubularin-related protein	0.687	0.093	0.909	4e-28
359486926	845	PREDICTED: myotubularin-related protein	0.687	0.078	0.893	1e-27
296090386	794	unnamed protein product [Vitis vinifera]	0.687	0.083	0.893	1e-27
147801855	646	hypothetical protein VITISV_006320 [Viti	0.687	0.102	0.893	2e-27
240255320	840	Myotubularin-like phosphatases II-like p	0.687	0.078	0.863	7e-27
8567785	840	myotubularin related protein, putative [	0.687	0.078	0.863	8e-27
297833832	828	hypothetical protein ARALYDRAFT_317855 [	0.687	0.079	0.863	1e-26
28393472	503	putative myotubularin [Arabidopsis thali	0.687	0.131	0.863	1e-26

>gi|255586601|ref|XP_002533934.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223526103|gb|EEF28453.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/66 (92%), Positives = 65/66 (98%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLDTHGTTSSDGMSSFLRHG WTWGGGNLSSMSASVSTLGD+GWLIHVQS+LAGSAWIA
Sbjct: 371 DYLDTHGTTSSDGMSSFLRHGNWTWGGGNLSSMSASVSTLGDTGWLIHVQSVLAGSAWIA 430

Query: 91  AQIALE 96
           A++ALE
Sbjct: 431 ARVALE 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441816|ref|XP_004138678.1| PREDICTED: LOW QUALITY PROTEIN: myotubularin-like [Cucumis sativus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 64/66 (96%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           +YLDTHG  SSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQS+LAGSAWIA
Sbjct: 375 EYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIA 434

Query: 91  AQIALE 96
           A++ALE
Sbjct: 435 ARVALE 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516121|ref|XP_004165096.1| PREDICTED: myotubularin-related protein 2-like, partial [Cucumis sativus]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 64/66 (96%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           +YLDTHG  SSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQS+LAGSAWIA
Sbjct: 220 EYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIA 279

Query: 91  AQIALE 96
           A++ALE
Sbjct: 280 ARVALE 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486926|ref|XP_002271349.2| PREDICTED: myotubularin-related protein 2-like [Vitis vinifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 64/66 (96%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLDT+GT SSDGMSSFLRHGGW+WGGGNLSSMSASVSTLGDSGWLIHVQS+LAGSAWIA
Sbjct: 366 DYLDTYGTASSDGMSSFLRHGGWSWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIA 425

Query: 91  AQIALE 96
           A++ LE
Sbjct: 426 ARVELE 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090386|emb|CBI40205.3| unnamed protein product [Vitis vinifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 64/66 (96%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLDT+GT SSDGMSSFLRHGGW+WGGGNLSSMSASVSTLGDSGWLIHVQS+LAGSAWIA
Sbjct: 366 DYLDTYGTASSDGMSSFLRHGGWSWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIA 425

Query: 91  AQIALE 96
           A++ LE
Sbjct: 426 ARVELE 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801855|emb|CAN63812.1| hypothetical protein VITISV_006320 [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 64/66 (96%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLDT+GT SSDGMSSFLRHGGW+WGGGNLSSMSASVSTLGDSGWLIHVQS+LAGSAWIA
Sbjct: 167 DYLDTYGTASSDGMSSFLRHGGWSWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIA 226

Query: 91  AQIALE 96
           A++ LE
Sbjct: 227 ARVELE 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255320|ref|NP_187666.5| Myotubularin-like phosphatases II-like protein [Arabidopsis thaliana] gi|332641403|gb|AEE74924.1| Myotubularin-like phosphatases II-like protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 63/66 (95%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLD HGTTSSDG SSFLRHGGWTWGGGNLSSMSASVS LGDSGWLIH+QS+LAG+AWIA
Sbjct: 370 DYLDMHGTTSSDGRSSFLRHGGWTWGGGNLSSMSASVSLLGDSGWLIHIQSVLAGAAWIA 429

Query: 91  AQIALE 96
           A++A+E
Sbjct: 430 ARVAME 435

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8567785|gb|AAF76357.1| myotubularin related protein, putative [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 63/66 (95%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLD HGTTSSDG SSFLRHGGWTWGGGNLSSMSASVS LGDSGWLIH+QS+LAG+AWIA
Sbjct: 395 DYLDMHGTTSSDGRSSFLRHGGWTWGGGNLSSMSASVSLLGDSGWLIHIQSVLAGAAWIA 454

Query: 91  AQIALE 96
           A++A+E
Sbjct: 455 ARVAME 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833832|ref|XP_002884798.1| hypothetical protein ARALYDRAFT_317855 [Arabidopsis lyrata subsp. lyrata] gi|297330638|gb|EFH61057.1| hypothetical protein ARALYDRAFT_317855 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 63/66 (95%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLD HGTTSSDG SSFLRHGGWTWGGGNLSSMSASVS LGDSGWLIH+QS+LAG+AWIA
Sbjct: 384 DYLDMHGTTSSDGRSSFLRHGGWTWGGGNLSSMSASVSLLGDSGWLIHIQSVLAGAAWIA 443

Query: 91  AQIALE 96
           A++A+E
Sbjct: 444 ARVAME 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393472|gb|AAO42157.1| putative myotubularin [Arabidopsis thaliana]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 63/66 (95%)

Query: 31  DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
           DYLD HGTTSSDG SSFLRHGGWTWGGGNLSSMSASVS LGDSGWLIH+QS+LAG+AWIA
Sbjct: 370 DYLDMHGTTSSDGRSSFLRHGGWTWGGGNLSSMSASVSLLGDSGWLIHIQSVLAGAAWIA 429

Query: 91  AQIALE 96
           A++A+E
Sbjct: 430 ARVAME 435

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2075850	840	MTM1 "myotubularin 1" [Arabido	0.687	0.078	0.863	1.1e-27
TAIR|locus:2184402	833	MTM2 "myotubularin 2" [Arabido	0.687	0.079	0.863	6.1e-27

TAIR|locus:2075850 MTM1 "myotubularin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 57/66 (86%), Positives = 63/66 (95%)

Query:    31 DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
             DYLD HGTTSSDG SSFLRHGGWTWGGGNLSSMSASVS LGDSGWLIH+QS+LAG+AWIA
Sbjct:   370 DYLDMHGTTSSDGRSSFLRHGGWTWGGGNLSSMSASVSLLGDSGWLIHIQSVLAGAAWIA 429

Query:    91 AQIALE 96
             A++A+E
Sbjct:   430 ARVAME 435

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0004438 "phosphatidylinositol-3-phosphatase activity" evidence=IDA

GO:0052629 "phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=RCA

GO:0043407 "negative regulation of MAP kinase activity" evidence=RCA

TAIR|locus:2184402 MTM2 "myotubularin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 6.1e-27, P = 6.1e-27
 Identities = 57/66 (86%), Positives = 61/66 (92%)

Query:    31 DYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA 90
             DYLD HGTTSSDG SSFLRHGGWTWGGGNLSSMSASVS LGDSGWL H+QSILAG AWIA
Sbjct:   367 DYLDMHGTTSSDGTSSFLRHGGWTWGGGNLSSMSASVSVLGDSGWLSHIQSILAGVAWIA 426

Query:    91 AQIALE 96
             A++A+E
Sbjct:   427 ARVAME 432


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.39    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.00u 0.06s 10.06t   Elapsed:  00:00:23
  Total cpu time:  10.00u 0.06s 10.06t   Elapsed:  00:00:23
  Start:  Thu May  9 13:38:57 2013   End:  Thu May  9 13:39:20 2013

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0032957 "inositol trisphosphate metabolic process" evidence=RCA

GO:0046855 "inositol phosphate dephosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_3000871	annotation not avaliable (828 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.5__77__AT2G01690.2	annotation not avaliable (744 aa)						•	•		0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG1089	573	consensus Myotubularin-related phosphatidylinosito	99.72
KOG4471	717	consensus Phosphatidylinositol 3-phosphate 3-phosp	99.69
PF06602	353	Myotub-related: Myotubularin-like phosphatase doma	99.18

>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]

Probab=99.72  E-value=3.1e-18  Score=146.61  Aligned_cols=64  Identities=30%  Similarity=0.346  Sum_probs=58.9

Q ss_pred             ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396           10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW   88 (96)
Q Consensus        10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~   88 (96)
                      =++.|+||+||||||+||+| +|+|..                       +.++|+.|++.||+||||+||++||++|++
T Consensus       279 ~~~~f~~i~nIh~v~~s~~kl~e~c~~-----------------------~~~~~~~~ls~LE~SgWL~~i~~~L~~a~~  335 (573)
T KOG1089|consen  279 WKFLFLGIENIHVVRSSLQKLLEVCNN-----------------------FLPTMDKWLSLLESSGWLKHIRAILKAAAE  335 (573)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHhc-----------------------cCccHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence            47899999999999999999 999963                       348999999999999999999999999999


Q ss_pred             HHHHhhhC
Q 034396           89 IAAQIALE   96 (96)
Q Consensus        89 IA~~V~~e   96 (96)
                      ||++|..|
T Consensus       336 ia~~l~~~  343 (573)
T KOG1089|consen  336 IAKCLSSE  343 (573)
T ss_pred             HHHHHHhC
Confidence            99999754

>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.4e-17  Score=144.55  Aligned_cols=61  Identities=28%  Similarity=0.319  Sum_probs=55.6

Q ss_pred             ccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHHHH
Q 034396           12 KMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWIA   90 (96)
Q Consensus        12 K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~IA   90 (96)
                      -+|+||+||||||+||+| .+.|-                        +.+.++.|++.|++++||.||+.||.||++||
T Consensus       312 i~Fl~i~NIH~mR~s~~~~k~~~~------------------------~~~d~s~wlS~Le~T~WL~Hi~~lLaga~~Ia  367 (717)
T KOG4471|consen  312 IVFLGIHNIHVMRESLRKLKEICY------------------------PSPDESNWLSALESTHWLEHISSLLAGAVRIA  367 (717)
T ss_pred             EEEeecchhHHHHHHHHhHHHhhc------------------------CCCCchhHHHhhccchHHHHHHHHHHHHHHHH
Confidence            479999999999999999 77773                        34788999999999999999999999999999


Q ss_pred             HHhhhC
Q 034396           91 AQIALE   96 (96)
Q Consensus        91 ~~V~~e   96 (96)
                      ..|+.|
T Consensus       368 ~kVe~~  373 (717)
T KOG4471|consen  368 DKVESE  373 (717)
T ss_pred             HHHhcC
Confidence            999865

>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO

Probab=99.18  E-value=1.7e-11  Score=98.26  Aligned_cols=64  Identities=28%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396           10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW   88 (96)
Q Consensus        10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~   88 (96)
                      -+.+|++|+|||+||+|+.| +++|..                      .+..+...|++.|++|+||.||+.+|++|..
T Consensus       165 ~~i~fl~i~nih~vr~s~~kl~~~~~~----------------------~~~~~~~~~~~~le~s~Wl~~v~~~L~~a~~  222 (353)
T PF06602_consen  165 CEIIFLNIPNIHSVRDSFQKLRELCSN----------------------TNSDNDDSWLSSLESSNWLDHVRSILSGASR  222 (353)
T ss_dssp             EEEEE-----HHHHHHHHHHHHHHH-S----------------------SSS--HHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             ceEEeeecCcHHHHHHHHHHHHHHhcc----------------------cccCCchhhhhccccCChHHHHHHHHHHHHH
Confidence            35689999999999999999 999911                      0125668899999999999999999999999


Q ss_pred             HHHHhhh
Q 034396           89 IAAQIAL   95 (96)
Q Consensus        89 IA~~V~~   95 (96)
                      ||+.+..
T Consensus       223 i~~~l~~  229 (353)
T PF06602_consen  223 IADLLHD  229 (353)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhhc
Confidence            9999864

Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	99.68
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	99.6
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	99.57

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=99.68  E-value=1.5e-17  Score=138.69  Aligned_cols=63  Identities=25%  Similarity=0.343  Sum_probs=56.2

Q ss_pred             cccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHHH
Q 034396           11 LKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAWI   89 (96)
Q Consensus        11 ~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~I   89 (96)
                      +++|+||+|||+||+||+| +|+|...                       .++++.|++.|++|+||+||+.||++|+.|
T Consensus       265 ~~~f~~i~nIh~~r~S~~kL~~~~~~~-----------------------~~~~~~~ls~Le~s~WL~~i~~iL~~a~~i  321 (512)
T 2yf0_A          265 RFQFVGIENIHVMRSSLQKLLEVNGTK-----------------------GLSVNDFYSGLESSGWLRHIKAVMDAAVFL  321 (512)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHSCC-----------------------SCCHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             eeEecChhhHHHHHHHHHHHHHHhcCC-----------------------CCCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            5689999999999999999 9999521                       156789999999999999999999999999


Q ss_pred             HHHhhhC
Q 034396           90 AAQIALE   96 (96)
Q Consensus        90 A~~V~~e   96 (96)
                      |++|+.|
T Consensus       322 a~~v~~~  328 (512)
T 2yf0_A          322 AKAITVE  328 (512)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            9999753

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=99.60  E-value=3.4e-16  Score=130.82  Aligned_cols=63  Identities=24%  Similarity=0.265  Sum_probs=55.4

Q ss_pred             ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396           10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW   88 (96)
Q Consensus        10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~   88 (96)
                      -+++|+||+|||+||+||+| +|+|..                        ..++..|++.|++|+||+||+.||++|+.
T Consensus       277 ~~~~f~~i~nIh~~r~S~~kL~~~~~~------------------------~~~~~~wls~Le~s~WL~~i~~iL~~a~~  332 (528)
T 1zsq_A          277 AELVFLDIHNIHVMRESLRKLKEIVYP------------------------NIEETHWLSNLESTHWLEHIKLILAGALR  332 (528)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHHHSS------------------------CCCGGGHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCccHHHHHHHHHHHHHHhCC------------------------CCcchhHHHHhHhcccHHHHHHHHHHHHH
Confidence            36789999999999999999 999941                        03456789999999999999999999999


Q ss_pred             HHHHhhhC
Q 034396           89 IAAQIALE   96 (96)
Q Consensus        89 IA~~V~~e   96 (96)
                      ||++|+.+
T Consensus       333 ia~~l~~~  340 (528)
T 1zsq_A          333 IADKVESG  340 (528)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99999754

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=99.57  E-value=1.3e-15  Score=130.64  Aligned_cols=63  Identities=24%  Similarity=0.265  Sum_probs=55.3

Q ss_pred             ccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHHH
Q 034396           10 GLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSAW   88 (96)
Q Consensus        10 ~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~~   88 (96)
                      -+++|+||+|||+||+||+| +|+|..                        ..++..|++.|++|+||+||+.||++|+.
T Consensus       349 ~~~~fl~I~nIh~mr~S~~KL~~~c~p------------------------~~~~~~wls~Le~S~WL~hI~~iL~~A~~  404 (657)
T 1lw3_A          349 AELVFLDIHNIHVMRESLRKLKEIVYP------------------------NIEETHWLSNLESTHWLEHIKLILAGALR  404 (657)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHHHSS------------------------CCCGGGHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCccHHHHHHHHHHHHHHhCC------------------------CCcchhHHHHHHhcccHHHHHHHHHHHHH
Confidence            35789999999999999999 999941                        03456789999999999999999999999


Q ss_pred             HHHHhhhC
Q 034396           89 IAAQIALE   96 (96)
Q Consensus        89 IA~~V~~e   96 (96)
                      ||++|+.+
T Consensus       405 ia~~l~~~  412 (657)
T 1lw3_A          405 IADKVESG  412 (657)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1zsqa2	387	c.45.1.3 (A:199-585) Myotubularin-related protein	0.003

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 61  SSMSASVSTLGDSGWLIHVQSILAGSAWIAAQIALE 96
              +  +S L  + WL H++ ILAG+  IA ++   
Sbjct: 176 IEETHWLSNLESTHWLEHIKLILAGALRIADKVESG 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1zsqa2	387	Myotubularin-related protein 2, C-terminal domain	99.5

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.2e-15  Score=117.80  Aligned_cols=64  Identities=23%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             cccccccCCcchHHHhhhccc-hhhhccCCCCCCCCCccccccCCcccCCCCCCCcchhhhhhcccchHHHHHHHHhHHH
Q 034396            9 RGLKMMSNSLNSRDHRRSLPD-IDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSILAGSA   87 (96)
Q Consensus         9 ~~~K~flgI~NIHVMRdSL~K-ieal~~~g~~~sd~~~s~~r~~~~~w~g~n~~sm~~~~s~L~sSgWLkHI~~ILdga~   87 (96)
                      ..+++|+||+|||+||+|+.| +++|...                        .+.+.|++.|++||||.||+.||.+|+
T Consensus       147 ~~~~~f~~i~nih~vr~s~~kl~~~~~~~------------------------~~~~~~~s~le~s~WL~~i~~~L~~A~  202 (387)
T d1zsqa2         147 NAELVFLDIHNIHVMRESLRKLKEIVYPN------------------------IEETHWLSNLESTHWLEHIKLILAGAL  202 (387)
T ss_dssp             TEEEEECCCCCHHHHHHHHHHHHHHHSSC------------------------CCGGGHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceeeeecccchHHHHHHHHHHHHHhcCC------------------------CchhhHHhhccccchHHHHHHHHHHHH
Confidence            346789999999999999999 9998521                        345779999999999999999999999


Q ss_pred             HHHHHhhhC
Q 034396           88 WIAAQIALE   96 (96)
Q Consensus        88 ~IA~~V~~e   96 (96)
                      .||+.|..|
T Consensus       203 ~ia~~l~~~  211 (387)
T d1zsqa2         203 RIADKVESG  211 (387)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999998754