Citrus Sinensis ID: 034489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCPREVKTAEAAEPGKQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccEEEccccccEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccHccccccccccccccccccccEEcccccEEEEcccccEEEcccccccccccEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MPLGLILGIGrafrrkrtssldilsskraprdyykgknckstgfhtrkggyVVVQeklpnyvvpdltdfkLKSYVsqcprevktaeaaepgkq
Flexible Loop (DISEMBL)
MPLGLILgigrafrrkrtssldilsskraprdyykgknckstgfhtrkggyvvvQEKLPNYVVPDLTDFKLKSYVSQCPREvktaeaaepgkq
Low Complexity Region (SEG)
MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCPREVKTAEAAEPGKQ
Disordered region (IsUnstruct)
***GLILGIGRAFR*****************DYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQC***************
Disordered Region (DISOPRED)
**LGLI*GIGRAFRRK***SL**LSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCP**************
Disordered Region (DISEMBL)
MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCP**************
Disordered Region (DISPRO)
*PLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCP**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCPREVKTAEAAEPGKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q6DJI4	135	39S ribosomal protein L41	N/A	no	0.784	0.540	0.445	7e-09
Q6INF3	135	39S ribosomal protein L41	N/A	no	0.784	0.540	0.445	9e-09
Q5BJX1	134	39S ribosomal protein L41	yes	no	0.698	0.485	0.432	8e-08
Q9CQN7	135	39S ribosomal protein L41	yes	no	0.784	0.540	0.364	1e-07
Q8IXM3	137	39S ribosomal protein L41	yes	no	0.784	0.532	0.394	3e-07
Q502B0	135	39S ribosomal protein L41	yes	no	0.784	0.540	0.324	1e-06
P36526	146	54S ribosomal protein L27	yes	no	0.569	0.363	0.415	5e-06

>sp|Q6DJI4|RM41A_XENLA 39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis GN=mrpl41-a PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 3  LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
          +GLI  I R   R     +   +SK+ P  Y KG+  K  G+ T  G +V V+E +P +V
Sbjct: 1  MGLISKIARGLVRG-ADRMAECTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 59

Query: 63 VPDLTDFKLKSYVS 76
          VPDLT FKLK YVS
Sbjct: 60 VPDLTGFKLKPYVS 73

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle.
Xenopus laevis (taxid: 8355)

>sp|Q6INF3|RM41B_XENLA 39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis GN=mrpl41-b PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 3  LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
          +GLI  I R   R     +   +SK  P  Y KG+  K  G+ T  G +V V+E +P +V
Sbjct: 1  MGLITKIARGLVRG-ADRMAECTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 59

Query: 63 VPDLTDFKLKSYVS 76
          VPDLT FKLK YVS
Sbjct: 60 VPDLTGFKLKPYVS 73

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle.

Xenopus laevis (taxid: 8355)

>sp|Q5BJX1|RM41_RAT 39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus GN=Mrpl41 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 24 LSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS-QCPREV 82
           +SKR PR + K +  K TGF+T +  +V ++E +P +VVPDLT FKLK YV+ + P  +
Sbjct: 21 WTSKRGPRTFTKSRGAKKTGFYTNRK-FVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGI 79

Query: 83 KTAEAAE 89
           T   A+
Sbjct: 80 DTPLTAK 86

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle. Enhances p53/TP53 stability, thereby contributing to p53/TP53-induced apoptosis in response to growth-inhibitory condition. Enhances p53/TP53 translocation to the mitochondria. Has the ability to arrest the cell cycle at the G1 phase, possibly by stabilizing the CDKN1A and CDKN1B (p27Kip1) proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQN7|RM41_MOUSE 39S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 3  LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
          +G +  + +   R     +   +SKR PR + K +  K TG +T    +V ++E +P +V
Sbjct: 1  MGFLTAVTQGLVRG-ADRMSKWTSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFV 59

Query: 63 VPDLTDFKLKSYVS 76
          VPDLT FKLK YV+
Sbjct: 60 VPDLTGFKLKPYVN 73

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle. Enhances p53/TP53 stability, thereby contributing to p53/TP53-induced apoptosis in response to growth-inhibitory condition. Enhances p53/TP53 translocation to the mitochondria. Has the ability to arrest the cell cycle at the G1 phase, possibly by stabilizing the CDKN1A and CDKN1B (p27Kip1) proteins.

Mus musculus (taxid: 10090)

>sp|Q8IXM3|RM41_HUMAN 39S ribosomal protein L41, mitochondrial OS=Homo sapiens GN=MRPL41 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 3  LGLILGIGRAFRRKRTSSLDILSSKRAPRDYY--KGKNCKSTGFHTRKGGYVVVQEKLPN 60
          +G++    R   R     +   +SKR PR +   KG+  K  GF T    +V ++E +P 
Sbjct: 1  MGVLAAAARCLVRG-ADRMSKWTSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPE 59

Query: 61 YVVPDLTDFKLKSYVS 76
          +VVPDLT FKLK YVS
Sbjct: 60 FVVPDLTGFKLKPYVS 75

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle. Enhances p53/TP53 stability, thereby contributing to p53/TP53-induced apoptosis in response to growth-inhibitory condition. Enhances p53/TP53 translocation to the mitochondria. Has the ability to arrest the cell cycle at the G1 phase, possibly by stabilizing the CDKN1A and CDKN1B (p27Kip1) proteins.

Homo sapiens (taxid: 9606)

>sp|Q502B0|RM41_DANRE 39S ribosomal protein L41, mitochondrial OS=Danio rerio GN=mrpl41 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 3  LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
          +G++  + R F R     +   +SKR PR +YK +  + TG  T    ++ ++  +P + 
Sbjct: 1  MGVLSALARGFVRG-ADRMAEWTSKRGPRTFYKSRGARPTGIVTSSRKFIPIRAMIPEFA 59

Query: 63 VPDLTDFKLKSYVS 76
          VP+L  F LK+YVS
Sbjct: 60 VPNLEGFNLKAYVS 73

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle.

Danio rerio (taxid: 7955)

>sp|P36526|RM27_YEAST 54S ribosomal protein L27, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL27 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 24 LSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS 76
          L++K+  +  YKG      G HT+ GGYV+  +K+  YV PD+ +F+LK YV+
Sbjct: 43 LTTKQGNKTMYKGTRASGIGRHTKFGGYVINWKKVRTYVTPDMVNFELKPYVN 95

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
302141998	175	unnamed protein product [Vitis vinifera]	0.989	0.525	0.891	3e-41
225459215	97	PREDICTED: 39S ribosomal protein L41-A,	0.989	0.948	0.891	5e-41
224090469	92	predicted protein [Populus trichocarpa]	0.989	1.0	0.880	3e-39
351726034	92	uncharacterized protein LOC100306274 [Gl	0.989	1.0	0.847	2e-38
388512477	92	unknown [Lotus japonicus]	0.956	0.967	0.876	2e-38
356515766	88	PREDICTED: 39S ribosomal protein L41-A,	0.946	1.0	0.863	2e-37
224082075	92	predicted protein [Populus trichocarpa]	0.989	1.0	0.836	2e-37
255580578	92	conserved hypothetical protein [Ricinus	0.989	1.0	0.826	3e-37
449436114	93	PREDICTED: 39S ribosomal protein L41-A,	1.0	1.0	0.817	6e-37
357487781	1243	Receptor-like protein kinase [Medicago t	0.946	0.070	0.806	1e-35

>gi|302141998|emb|CBI19201.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/92 (89%), Positives = 85/92 (92%)

Query: 1   MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
           M LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCK TGFHTRKGGYV++QEKLPN
Sbjct: 79  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLMQEKLPN 138

Query: 61  YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
           YVVPDLTDFKLK YVSQCPREVKT EA E  +
Sbjct: 139 YVVPDLTDFKLKPYVSQCPREVKTNEATEAAQ 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459215|ref|XP_002285745.1| PREDICTED: 39S ribosomal protein L41-A, mitochondrial [Vitis vinifera] gi|147843318|emb|CAN82662.1| hypothetical protein VITISV_004928 [Vitis vinifera]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/92 (89%), Positives = 85/92 (92%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          M LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCK TGFHTRKGGYV++QEKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLMQEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
          YVVPDLTDFKLK YVSQCPREVKT EA E  +
Sbjct: 61 YVVPDLTDFKLKPYVSQCPREVKTNEATEAAQ 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090469|ref|XP_002308991.1| predicted protein [Populus trichocarpa] gi|222854967|gb|EEE92514.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 82/92 (89%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          MPLGLI GIGRA RRKRTSSLDILSSKRAPR YYKGKNCK TGFHTRKGGYVVV EKLPN
Sbjct: 1  MPLGLITGIGRAMRRKRTSSLDILSSKRAPRTYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
          YVVPDLTDFKLK YVSQCP EVKT EA+E  K
Sbjct: 61 YVVPDLTDFKLKPYVSQCPTEVKTTEASELAK 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726034|ref|NP_001236345.1| uncharacterized protein LOC100306274 [Glycine max] gi|255628073|gb|ACU14381.1| unknown [Glycine max]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 82/92 (89%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          MPLGLILGIGRAFRRKR SSLDILSSKRAPR YYKGKNCK TGFHTRKGGYVV+QEKLPN
Sbjct: 1  MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
          YVVPDLTDFKLK Y SQCP E  T+EA++  K
Sbjct: 61 YVVPDLTDFKLKPYASQCPIEANTSEASQTAK 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512477|gb|AFK44300.1| unknown [Lotus japonicus]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 82/89 (92%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          MPLGLILGIG AFRRKRTSSLDIL+SKRAPRDYYKGKNCK TGFHTRKGGYVVV EKLP 
Sbjct: 1  MPLGLILGIGGAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPK 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAE 89
          YVVPDLTDFKLK YVSQCPREV T+E ++
Sbjct: 61 YVVPDLTDFKLKPYVSQCPREVNTSEDSQ 89

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515766|ref|XP_003526569.1| PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Glycine max]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 80/88 (90%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          MPLGLILGIGRAFRRKR SSLDILSSKRAPR YYKGKNCK TGFHTRKGGYVV+QEKLPN
Sbjct: 1  MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAA 88
          YVVPDL+DFKLK YVSQCP E  T+E +
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIEANTSEVS 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082075|ref|XP_002306562.1| predicted protein [Populus trichocarpa] gi|222856011|gb|EEE93558.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/92 (83%), Positives = 81/92 (88%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          MPLGLI GIGRA RRKRTSSLDILSSKRAPR+YYKGKNCK TGFHTRKGGYVVV EKLPN
Sbjct: 1  MPLGLITGIGRAMRRKRTSSLDILSSKRAPRNYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
          YVVPDLTDF LK +VSQC  +VKT EA+E  K
Sbjct: 61 YVVPDLTDFMLKPFVSQCQTDVKTTEASESAK 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580578|ref|XP_002531113.1| conserved hypothetical protein [Ricinus communis] gi|223529309|gb|EEF31278.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 81/92 (88%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          M LGLILGIGRAFRRKRTS+LDILSSKRAP DYYKGKNCK TGFHTRKGGYV+V EKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSALDILSSKRAPHDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
          YVVPDLTDFKLK YVSQC  ++KT EA+   K
Sbjct: 61 YVVPDLTDFKLKPYVSQCATQIKTTEASAAKK 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436114|ref|XP_004135839.1| PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis sativus] gi|449490988|ref|XP_004158767.1| PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis sativus]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 81/93 (87%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
          M LGLILG+GR  RRKRTSSLDILSSKRAPRDYYKGKNCK TGFHTRKGGYVVV EKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLTDFKLKSYVSQCPREVKTAEAAEPGKQ 93
          YVVPDL+DFKLK YVSQCP E+KT++  E  K 
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 93

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487781|ref|XP_003614178.1| Receptor-like protein kinase [Medicago truncatula] gi|355515513|gb|AES97136.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/88 (80%), Positives = 77/88 (87%)

Query: 1    MPLGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPN 60
            MPLGLILGIGRA+R KR S+LDILS KRAPR +YKGKNCK TGF TRKGGYVVV+EKLPN
Sbjct: 1152 MPLGLILGIGRAYRLKRASTLDILSPKRAPRGFYKGKNCKPTGFFTRKGGYVVVKEKLPN 1211

Query: 61   YVVPDLTDFKLKSYVSQCPREVKTAEAA 88
            YVVPDLT FKLK YVSQCP E KT++ A
Sbjct: 1212 YVVPDLTGFKLKPYVSQCPIEAKTSDEA 1239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2167072	94	AT5G39800 "AT5G39800" [Arabido	0.956	0.946	0.775	5.8e-34
TAIR|locus:2174910	94	AT5G40080 "AT5G40080" [Arabido	0.956	0.946	0.775	5.8e-34
UNIPROTKB|A5PJ71	135	MRPL41 "Uncharacterized protei	0.784	0.540	0.445	8.2e-12
UNIPROTKB|E2R2N8	135	MRPL41 "Uncharacterized protei	0.784	0.540	0.432	2.2e-11
UNIPROTKB|Q6DJI4	135	mrpl41-a "39S ribosomal protei	0.784	0.540	0.445	2e-10
UNIPROTKB|Q6INF3	135	mrpl41-b "39S ribosomal protei	0.784	0.540	0.445	3.2e-10
UNIPROTKB|E1BU45	135	MRPL41 "Uncharacterized protei	0.881	0.607	0.363	5.2e-10
RGD|1310241	134	Mrpl41 "mitochondrial ribosoma	0.688	0.477	0.439	6.6e-10
MGI|MGI:1333816	135	Mrpl41 "mitochondrial ribosoma	0.698	0.481	0.424	1.4e-09
UNIPROTKB|Q8IXM3	137	MRPL41 "39S ribosomal protein	0.870	0.591	0.376	1.2e-08

TAIR|locus:2167072 AT5G39800 "AT5G39800" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 69/89 (77%), Positives = 77/89 (86%)

Query:     4 GLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVV 63
             GL++GIGR+FRRKR+SSLDILS KRAPRD+YKGKNCK TGFHTRKGGYVV  +KLPNYVV
Sbjct:     6 GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query:    64 PDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
             PDLT FKLK YVSQCP +V T E+ E  K
Sbjct:    66 PDLTGFKLKPYVSQCPIQVNTNESTEASK 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174910 AT5G40080 "AT5G40080" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 69/89 (77%), Positives = 76/89 (85%)

Query:     4 GLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVV 63
             GL++GIGR+FRRKR SSLDILS KRAPRD+YKGKNCK TGFHTRKGGYVV  +KLPNYVV
Sbjct:     6 GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query:    64 PDLTDFKLKSYVSQCPREVKTAEAAEPGK 92
             PDLT FKLK YVSQCP +V T E+ E  K
Sbjct:    66 PDLTGFKLKPYVSQCPLQVNTNESTEASK 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A5PJ71 MRPL41 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 33/74 (44%), Positives = 45/74 (60%)

Query:     3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
             +GL+ G  RA  R     +   +SKR PR ++K +  K  GFH R G +V+V+E +P  V
Sbjct:     1 MGLLSGAARALVRG-ADRMSKWTSKRGPRTFHKSRGAKGVGFHGRGGKFVLVKEMVPELV 59

Query:    63 VPDLTDFKLKSYVS 76
             VPDL  FKLK YV+
Sbjct:    60 VPDLAGFKLKPYVN 73

GO:0006412 "translation" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R2N8 MRPL41 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query:     3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
             +GL+    R   R     +   +SKR PR +YKG+  K TG H R G +V+V+E +P  V
Sbjct:     1 MGLLSEAARCLVRG-ADRMSRWTSKRGPRTFYKGRGAKGTGVHGRDGKFVLVKEMVPELV 59

Query:    63 VPDLTDFKLKSYVS 76
             VP+LT F+LK YV+
Sbjct:    60 VPELTGFRLKPYVN 73

GO:0006412 "translation" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q6DJI4 mrpl41-a "39S ribosomal protein L41-A, mitochondrial" [Xenopus laevis (taxid:8355)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/74 (44%), Positives = 43/74 (58%)

Query:     3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
             +GLI  I R   R      +  +SK+ P  Y KG+  K  G+ T  G +V V+E +P +V
Sbjct:     1 MGLISKIARGLVRGADRMAEC-TSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 59

Query:    63 VPDLTDFKLKSYVS 76
             VPDLT FKLK YVS
Sbjct:    60 VPDLTGFKLKPYVS 73

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|Q6INF3 mrpl41-b "39S ribosomal protein L41-B, mitochondrial" [Xenopus laevis (taxid:8355)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 33/74 (44%), Positives = 42/74 (56%)

Query:     3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
             +GLI  I R   R      +  +SK  P  Y KG+  K  G+ T  G +V V+E +P +V
Sbjct:     1 MGLITKIARGLVRGADRMAEC-TSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 59

Query:    63 VPDLTDFKLKSYVS 76
             VPDLT FKLK YVS
Sbjct:    60 VPDLTGFKLKPYVS 73

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|E1BU45 MRPL41 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query:     3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
             +GL+  + R   R     +   +SKR PR Y KG+  K  G  T    +++++E +P +V
Sbjct:     1 MGLLTELARGLVRG-ADRMSPFTSKRGPRSYNKGRGAKKMGVLTSSKKFILIKEMVPQFV 59

Query:    63 VPDLTDFKLKSYVSQCPREVKTAEAAEP 90
             VPDL  FKLK YVS      +  E +EP
Sbjct:    60 VPDLAGFKLKPYVSY-----RAPEGSEP 82

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|1310241 Mrpl41 "mitochondrial ribosomal protein L41" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 29/66 (43%), Positives = 43/66 (65%)

Query:    25 SSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS-QCPREVK 83
             +SKR PR + K +  K TGF+T +  +V ++E +P +VVPDLT FKLK YV+ + P  + 
Sbjct:    22 TSKRGPRTFTKSRGAKKTGFYTNRK-FVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGID 80

Query:    84 TAEAAE 89
             T   A+
Sbjct:    81 TPLTAK 86

GO:0003735 "structural constituent of ribosome" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO;ISS

GO:0006412 "translation" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

MGI|MGI:1333816 Mrpl41 "mitochondrial ribosomal protein L41" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query:    25 SSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS-QCPREVK 83
             +SKR PR + K +  K TG +T    +V ++E +P +VVPDLT FKLK YV+ + P  + 
Sbjct:    22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGID 81

Query:    84 TAEAAE 89
             T   A+
Sbjct:    82 TPLTAK 87

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

UNIPROTKB|Q8IXM3 MRPL41 "39S ribosomal protein L41, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/85 (37%), Positives = 45/85 (52%)

Query:     3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYY--KGKNCKSTGFHTRKGGYVVVQEKLPN 60
             +G++    R   R     +   +SKR PR +   KG+  K  GF T    +V ++E +P 
Sbjct:     1 MGVLAAAARCLVRG-ADRMSKWTSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPE 59

Query:    61 YVVPDLTDFKLKSYVSQ-CPREVKT 84
             +VVPDLT FKLK YVS   P   +T
Sbjct:    60 FVVPDLTGFKLKPYVSYLAPESEET 84

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015183001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (97 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam09809	113	pfam09809, MRP-L27, Mitochondrial ribosomal protei	1e-17

>gnl|CDD|220415 pfam09809, MRP-L27, Mitochondrial ribosomal protein L27

 Score = 70.9 bits (174), Expect = 1e-17
 Identities = 29/53 (54%), Positives = 37/53 (69%)

Query: 24 LSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS 76
          L+SKR  + +YKG+     G HT  G YV++ EK+P +VVPDLT FKLK YVS
Sbjct: 9  LTSKRGNKTFYKGRGASGIGRHTSSGRYVIIWEKVPTFVVPDLTGFKLKPYVS 61

Members of this family of proteins are components of the mitochondrial ribosome large subunit. They are also involved in apoptosis and cell cycle regulation. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF09809	113	MRP-L27: Mitochondrial ribosomal protein L27; Inte	100.0
KOG4756	146	consensus Mitochondrial ribosomal protein L27 [Tra	99.88

>PF09809 MRP-L27: Mitochondrial ribosomal protein L27; InterPro: IPR019189 Proteins in this entry are components of the mitochondrial ribosome large subunit

Probab=100.00  E-value=3.2e-34  Score=199.67  Aligned_cols=73  Identities=51%  Similarity=0.792  Sum_probs=69.1

Q ss_pred             CCCCcccccccCCccccCccCCCCceEeeeccEEEccCCCCeeeCCCCCCcccccccccCCCCcccccccCCC
Q 034489           19 SSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVSQCPREVKTAEAAEPG   91 (93)
Q Consensus        19 ~~~~~ltsK~gnk~~yKG~g~~~~G~~t~~G~f~i~~~kvp~fVVPdL~~f~LKPyVS~~~~~v~q~e~t~~~   91 (93)
                      .+..|||||||||+||||+|++++|+|+++|+|+|+|+|||+||||||++|+||||||++++++.|+|+||+.
T Consensus         4 ~rr~~LttK~g~k~fyKG~g~~~~G~~t~~g~yvi~~~kvp~~VVPdL~~f~LKPyVS~~~p~~~~~~~Ta~~   76 (113)
T PF09809_consen    4 FRRFPLTTKRGNKGFYKGTGARGTGRHTKKGGYVIVPEKVPEFVVPDLTDFKLKPYVSYRTPEVKQEEFTAKD   76 (113)
T ss_pred             ccccccccccCCccccCCcCCCCCcEEccCccEEECHHHCceeeCCCCCCCccccccccCccccccccccHHH
Confidence            3445799999999999999999999999999999999999999999999999999999999999999999863

They are also involved in apoptosis and cell cycle regulation.

>KOG4756 consensus Mitochondrial ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=7.8e-24  Score=152.05  Aligned_cols=83  Identities=53%  Similarity=0.789  Sum_probs=68.5

Q ss_pred             hHHHHHHHhhhhhc----cCCCC-------cccccccCCccccCccCCCCceEeeeccEEEccCCCCeeeCCCCCCcccc
Q 034489            4 GLILGIGRAFRRKR----TSSLD-------ILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLK   72 (93)
Q Consensus         4 g~~~~~~rg~~r~~----a~~~~-------~ltsK~gnk~~yKG~g~~~~G~~t~~G~f~i~~~kvp~fVVPdL~~f~LK   72 (93)
                      |.|.++.|-++|.|    |++++       |+++|++||+.|||+|++++|+||+.|.|+|+|+|+||||||||++|+||
T Consensus        12 ~slna~~rp~~r~r~~~~a~glsK~g~kr~Pr~~k~~~k~l~kgtgakgiGfht~kggyvV~~ekv~eyVvPdl~gFkLk   91 (146)
T KOG4756|consen   12 GSLNAIGRPFRRKRVKKGASGLSKLGPKRAPRDFKLNPKELHKGTGAKGIGFHTRKGGYVVQPEKVPEYVVPDLTGFKLK   91 (146)
T ss_pred             hhhhhccCccccccccccccchhhhccccCchhhhcCchhhcccccccccceeeccccEEeCHhhccceeccCccCceec
Confidence            56788888888876    66665       55555666666799999999999999999999999999999999999999


Q ss_pred             cccccCCCCccccc
Q 034489           73 SYVSQCPREVKTAE   86 (93)
Q Consensus        73 PyVS~~~~~v~q~e   86 (93)
                      ||||-+.|....+.
T Consensus        92 PYVs~q~p~~~~q~  105 (146)
T KOG4756|consen   92 PYVSVQCPLRRVQV  105 (146)
T ss_pred             cceeccCchhHhhh
Confidence            99996665544433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00