Citrus Sinensis ID: 034609

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSPNTESLSQTKQS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mgasrgprlsglQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFrrnsnqvdrkNFLYIEYLLRRGKKQLeqlqspnteslsqtkqs
Flexible Loop (DISEMBL)
mgasrgprlsglqKQVLSLYRGFLRAarcksaadrrqiesivsaefrrnsnqvdrkNFLYIEYLLRRGKKqleqlqspnteslsqtkqs
Low Complexity Region (SEG)
MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSPNTESLSQTKQS
Disordered region (IsUnstruct)
**************QVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR**********************
Disordered Region (DISOPRED)
************QKQVLSLYRGFLRAARC******RQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSP***********
Disordered Region (DISEMBL)
**********GLQKQVLSLYRGFLRAA*********QIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQL**************
Disordered Region (DISPRO)
********LSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSP***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSPNTESLSQTKQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
B0K036	118	Succinate dehydrogenase a	yes	no	0.797	0.601	0.480	4e-09
A6NFY7	115	Succinate dehydrogenase a	yes	no	0.797	0.617	0.467	7e-09
Q9US02	79	Succinate dehydrogenase a	yes	no	0.842	0.949	0.381	1e-08
A8PU71	118	Succinate dehydrogenase a	yes	no	0.797	0.601	0.467	2e-08
Q54HG5	91	Succinate dehydrogenase a	yes	no	0.797	0.780	0.430	4e-08
Q3U276	118	Succinate dehydrogenase a	yes	no	0.797	0.601	0.454	5e-08
Q3E785	79	Succinate dehydrogenase a	yes	no	0.786	0.886	0.408	1e-07
A6ZYX9	79	Succinate dehydrogenase a	N/A	no	0.786	0.886	0.408	1e-07

>sp|B0K036|SDHF1_RAT Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus GN=Sdhaf1 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 6/77 (7%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          RLS LQ+QVLSLYR  LRA R K  A     E+ V AEFR++++ + R + L IEYL RR
Sbjct: 3  RLSRLQRQVLSLYRELLRAGRGKPGA-----EARVRAEFRQHAS-LPRSDVLRIEYLYRR 56

Query: 68 GKKQLEQLQSPNTESLS 84
          G++QL+ L+S +  ++ 
Sbjct: 57 GRRQLQLLRSGHATAMG 73

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.
Rattus norvegicus (taxid: 10116)

>sp|A6NFY7|SDHF1_HUMAN Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens GN=SDHAF1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 6/77 (7%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          R S LQ+QVLSLYR  LRA R K  A     E+ V AEFR+++  + R + L IEYL RR
Sbjct: 3  RHSRLQRQVLSLYRDLLRAGRGKPGA-----EARVRAEFRQHAG-LPRSDVLRIEYLYRR 56

Query: 68 GKKQLEQLQSPNTESLS 84
          G++QL+ L+S +  ++ 
Sbjct: 57 GRRQLQLLRSGHATAMG 73

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.

Homo sapiens (taxid: 9606)

>sp|Q9US02|SDHF1_SCHPO Succinate dehydrogenase assembly factor 1 homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.12c PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 9  LSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRG 68
          LSGLQ+QV+  YR  L AA+ K      +  + V  EFR+N   + +++F YIE+LLR G
Sbjct: 3  LSGLQRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKNQT-ISKRDFFYIEHLLRVG 61

Query: 69 KKQLEQLQSPNTESLS 84
          ++Q E    P  + + 
Sbjct: 62 QRQYEAYSRPEVKDIH 77

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A8PU71|SDHF1_BOVIN Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus GN=SDHAF1 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 6/77 (7%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          R S LQ+QVLSLYR  LRA R K  A     E+ V AEFR+++  + R + L IEYL RR
Sbjct: 3  RHSRLQRQVLSLYRELLRAGRGKPGA-----EARVRAEFRQHAC-LPRSDVLRIEYLYRR 56

Query: 68 GKKQLEQLQSPNTESLS 84
          G++QL+ L+S +  ++ 
Sbjct: 57 GRRQLQMLRSGHATAMG 73

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.

Bos taurus (taxid: 9913)

>sp|Q54HG5|SDHFA_DICDI Succinate dehydrogenase assembly factor 1 homolog A, mitochondrial OS=Dictyostelium discoideum GN=sdhaf1A PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAAD-RRQIESIVSAEFRRNSNQVDRKNFLYIEYLLR 66
          R SGLQK VLSLYR FLR +  K   +    I + +  +FR  +  + +++   IE LL 
Sbjct: 7  RHSGLQKAVLSLYRSFLRVSNKKEMDNPSSSISNYIKTQFRLKATTIQKRDINKIESLLV 66

Query: 67 RGKKQLEQLQSP 78
          +GK+QLEQ+Q P
Sbjct: 67 KGKRQLEQIQDP 78

Dictyostelium discoideum (taxid: 44689)

>sp|Q3U276|SDHF1_MOUSE Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus musculus GN=Sdhaf1 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 6/77 (7%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          R S LQ+QVLSLYR  LRA R    A     E+ V AEFR++++ + R + L IEYL RR
Sbjct: 3  RPSRLQRQVLSLYRELLRAGRGTPGA-----EARVRAEFRQHAS-LPRTDVLRIEYLYRR 56

Query: 68 GKKQLEQLQSPNTESLS 84
          G++QL+ L+S +  ++ 
Sbjct: 57 GRRQLQLLRSGHATAMG 73

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.

Mus musculus (taxid: 10090)

>sp|Q3E785|SDHF1_YEAST Succinate dehydrogenase assembly factor 1 homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR379C-A PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          RLSGLQK+VL LYR  +R A  K   ++    + +  EF +  N + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRN-LPRKDFTTIEHLLRV 62

Query: 68 GKKQLEQLQSP 78
          G K++     P
Sbjct: 63 GNKKIATFSHP 73

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZYX9|SDHF1_YEAS7 Succinate dehydrogenase assembly factor 1 homolog, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_1267 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          RLSGLQK+VL LYR  +R A  K   ++    + +  EF +  N + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRN-LPRKDFTTIEHLLRV 62

Query: 68 GKKQLEQLQSP 78
          G K++     P
Sbjct: 63 GNKKIATFSHP 73

Plays an essential role in succinate dehydrogenase complex (SDH) assembly, a complex involved in complex II of the mitochondrial electron transport chain. Probably acts by participating in mitochondrial biosynthesis of iron-sulfur centers for complex II.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
225460086	96	PREDICTED: succinate dehydrogenase assem	0.943	0.875	0.821	2e-30
224057493	100	predicted protein [Populus trichocarpa]	0.943	0.84	0.802	5e-30
255582743	93	catalytic, putative [Ricinus communis] g	0.943	0.903	0.761	2e-28
358248368	97	uncharacterized protein LOC100791084 [Gl	0.943	0.865	0.726	2e-26
357481237	93	Succinate dehydrogenase assembly factor-	0.943	0.903	0.726	4e-26
388510094	91	unknown [Lotus japonicus]	0.865	0.846	0.766	1e-25
297823861	90	complex 1 family protein [Arabidopsis ly	0.943	0.933	0.689	6e-25
18405143	90	LYR family of Fe/S cluster biogenesis pr	0.943	0.933	0.689	2e-24
242040301	88	hypothetical protein SORBIDRAFT_01g03001	0.910	0.920	0.670	5e-24
115475684	93	Os08g0278600 [Oryza sativa Japonica Grou	0.910	0.870	0.682	6e-24

>gi|225460086|ref|XP_002275167.1| PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 71/84 (84%)

Query: 1  MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
          MGAS GPR SG+QKQVL LYRGFLRAAR KS  DRR+IES VSAEFRRNS  VDRKNFLY
Sbjct: 1  MGASSGPRFSGMQKQVLGLYRGFLRAARSKSPEDRRRIESFVSAEFRRNSKLVDRKNFLY 60

Query: 61 IEYLLRRGKKQLEQLQSPNTESLS 84
          IEYLLRRGKKQLEQL SP T  LS
Sbjct: 61 IEYLLRRGKKQLEQLNSPATLGLS 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057493|ref|XP_002299239.1| predicted protein [Populus trichocarpa] gi|222846497|gb|EEE84044.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 1  MGASRG--PRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNF 58
          MG S G   RLSG+QKQVL+LYRGFLRAAR KS  DRRQIES VSAEFRRNS QVDRKNF
Sbjct: 1  MGPSTGGRTRLSGMQKQVLTLYRGFLRAARSKSPEDRRQIESFVSAEFRRNSKQVDRKNF 60

Query: 59 LYIEYLLRRGKKQLEQLQSPNTESLS 84
          +YIEYLLRRGKKQLEQL SP+T  LS
Sbjct: 61 IYIEYLLRRGKKQLEQLNSPDTVGLS 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582743|ref|XP_002532148.1| catalytic, putative [Ricinus communis] gi|223528158|gb|EEF30222.1| catalytic, putative [Ricinus communis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 72/84 (85%)

Query: 1  MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
          M  SRG +LSG+QKQVLSLYR FLRAAR KS  DRRQIES+VSAEFRRNS +VDRKNFLY
Sbjct: 1  MVVSRGTKLSGMQKQVLSLYRSFLRAARLKSPEDRRQIESLVSAEFRRNSKEVDRKNFLY 60

Query: 61 IEYLLRRGKKQLEQLQSPNTESLS 84
          IEYL+RRG+KQL+QL+SP    LS
Sbjct: 61 IEYLIRRGRKQLDQLKSPGILGLS 84

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248368|ref|NP_001239870.1| uncharacterized protein LOC100791084 [Glycine max] gi|255637377|gb|ACU19017.1| unknown [Glycine max]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 71/84 (84%)

Query: 1  MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
          MG+S+  RLSG+QKQVLSLYRGFLRAAR KS  +R +IESI+S EFRRN+  VDRKNFLY
Sbjct: 1  MGSSKVQRLSGMQKQVLSLYRGFLRAARSKSEEERCKIESIISQEFRRNAEDVDRKNFLY 60

Query: 61 IEYLLRRGKKQLEQLQSPNTESLS 84
          IEYLLRRG KQL+QL++P T  LS
Sbjct: 61 IEYLLRRGNKQLDQLKNPGTTGLS 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481237|ref|XP_003610904.1| Succinate dehydrogenase assembly factor-like protein [Medicago truncatula] gi|355512239|gb|AES93862.1| Succinate dehydrogenase assembly factor-like protein [Medicago truncatula]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 67/84 (79%)

Query: 1  MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
          MG +R  RLSG+QKQVLSLYRGFLRAAR K   +RR IESIVS EFR NS +VDRKNF Y
Sbjct: 1  MGGTRVQRLSGMQKQVLSLYRGFLRAARSKPDQERRNIESIVSQEFRHNSKEVDRKNFQY 60

Query: 61 IEYLLRRGKKQLEQLQSPNTESLS 84
          IEYLLRRG KQL+QL +P T  LS
Sbjct: 61 IEYLLRRGHKQLDQLNNPGTTGLS 84

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510094|gb|AFK43113.1| unknown [Lotus japonicus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 67/77 (87%)

Query: 8  RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
          RLSG+QKQVLSLYRGFLRAAR KS  +RR +ESIVS EFRRNS +VDRKNFLYIEYLLRR
Sbjct: 5  RLSGMQKQVLSLYRGFLRAARSKSEEERRNMESIVSQEFRRNSKEVDRKNFLYIEYLLRR 64

Query: 68 GKKQLEQLQSPNTESLS 84
          G +QL+QL++P T  LS
Sbjct: 65 GTRQLDQLKNPGTTGLS 81

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823861|ref|XP_002879813.1| complex 1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297325652|gb|EFH56072.1| complex 1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 69/87 (79%), Gaps = 3/87 (3%)

Query: 1  MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
          MGAS+   LSG+QKQVLSLYRGFLRAAR +   DR++IE IVS EFR NS +VDRKNF Y
Sbjct: 1  MGASK---LSGMQKQVLSLYRGFLRAARSRPTEDRKRIEMIVSTEFRHNSKEVDRKNFQY 57

Query: 61 IEYLLRRGKKQLEQLQSPNTESLSQTK 87
          IEYLLR G KQL+QL+SP+  SLS  K
Sbjct: 58 IEYLLRLGTKQLDQLKSPDIVSLSSIK 84

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405143|ref|NP_565912.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] gi|42571133|ref|NP_973640.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] gi|17380728|gb|AAL36194.1| unknown protein [Arabidopsis thaliana] gi|20196975|gb|AAM14851.1| Expressed protein [Arabidopsis thaliana] gi|20259013|gb|AAM14222.1| unknown protein [Arabidopsis thaliana] gi|21593894|gb|AAM65861.1| unknown [Arabidopsis thaliana] gi|330254618|gb|AEC09712.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] gi|330254619|gb|AEC09713.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 68/87 (78%), Gaps = 3/87 (3%)

Query: 1  MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
          MGAS+   LSG+QKQVLSLYRGFLRAAR +   DR++IE IVS EFR NS +VDRKNF Y
Sbjct: 1  MGASK---LSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQY 57

Query: 61 IEYLLRRGKKQLEQLQSPNTESLSQTK 87
          IEYLLR G KQL+QL+SP   SLS  K
Sbjct: 58 IEYLLRLGTKQLDQLKSPAIVSLSSIK 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242040301|ref|XP_002467545.1| hypothetical protein SORBIDRAFT_01g030010 [Sorghum bicolor] gi|241921399|gb|EER94543.1| hypothetical protein SORBIDRAFT_01g030010 [Sorghum bicolor]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 3  ASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIE 62
          ASR P+LSG+QKQVL+LYRGFLR AR K+  +RR+IES+VSAEF  N+  VDR+NF++IE
Sbjct: 2  ASR-PKLSGIQKQVLALYRGFLRTARLKAPEERRRIESVVSAEFHENARSVDRRNFVHIE 60

Query: 63 YLLRRGKKQLEQLQSPNTESLS 84
          YLLRRGKKQLEQL++P+   L+
Sbjct: 61 YLLRRGKKQLEQLKNPDITGLA 82

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115475684|ref|NP_001061438.1| Os08g0278600 [Oryza sativa Japonica Group] gi|37805900|dbj|BAC99749.1| unknown protein [Oryza sativa Japonica Group] gi|37806066|dbj|BAC99517.1| unknown protein [Oryza sativa Japonica Group] gi|113623407|dbj|BAF23352.1| Os08g0278600 [Oryza sativa Japonica Group] gi|215766899|dbj|BAG99127.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640253|gb|EEE68385.1| hypothetical protein OsJ_26716 [Oryza sativa Japonica Group]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 68/82 (82%), Gaps = 1/82 (1%)

Query: 3  ASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIE 62
          ASR  +LSG+Q+QVL+LYRGFLR AR KS  +R +IES+VSAEFR N+  +DRKNF+YIE
Sbjct: 2  ASRS-KLSGIQRQVLALYRGFLRTARLKSPEERHRIESVVSAEFRENARNIDRKNFVYIE 60

Query: 63 YLLRRGKKQLEQLQSPNTESLS 84
          YLLRRGKKQLEQL+ P+   LS
Sbjct: 61 YLLRRGKKQLEQLKDPDITGLS 82

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:505006309	90	AT2G39725 "AT2G39725" [Arabido	0.943	0.933	0.689	2.6e-24
UNIPROTKB|G4MQR1	78	MGG_11728 "Uncharacterized pro	0.842	0.961	0.460	1.2e-12
ASPGD|ASPL0000032293	78	AN10717 [Emericella nidulans (	0.842	0.961	0.460	5e-12
RGD|1559845	118	RGD1559845 "similar to SPBPJ46	0.786	0.593	0.486	1.5e-10
RGD|1562079	118	Sdhaf1 "succinate dehydrogenas	0.786	0.593	0.486	1.5e-10
UNIPROTKB|A6NFY7	115	SDHAF1 "Succinate dehydrogenas	0.786	0.608	0.473	8.4e-10
DICTYBASE|DDB_G0289475	91	sdhaf1A "putative mitochondria	0.797	0.780	0.430	1.4e-09
UNIPROTKB|A8PU71	118	SDHAF1 "Succinate dehydrogenas	0.786	0.593	0.473	1.4e-09
POMBASE|SPAC664.12c	79	SPAC664.12c "mitochondrial suc	0.831	0.936	0.386	1.8e-09
UNIPROTKB|F1RLD9	116	SDHAF1 "Uncharacterized protei	0.786	0.603	0.473	2.2e-09

TAIR|locus:505006309 AT2G39725 "AT2G39725" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 60/87 (68%), Positives = 68/87 (78%)

Query:     1 MGASRGPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLY 60
             MGAS+   LSG+QKQVLSLYRGFLRAAR +   DR++IE IVS EFR NS +VDRKNF Y
Sbjct:     1 MGASK---LSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQY 57

Query:    61 IEYLLRRGKKQLEQLQSPNTESLSQTK 87
             IEYLLR G KQL+QL+SP   SLS  K
Sbjct:    58 IEYLLRLGTKQLDQLKSPAIVSLSSIK 84

GO:0003824 "catalytic activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

UNIPROTKB|G4MQR1 MGG_11728 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             RLSGLQK+VLSLYR  LR  R K    R+       AEF RN   +D+++F  +EYLLR+
Sbjct:     2 RLSGLQKEVLSLYRSTLREIRKKPETSRQHFRDFARAEFDRNL-VIDKRDFAAVEYLLRK 60

Query:    68 GKKQLEQLQSPNTESL 83
             G++QLE   +P  + +
Sbjct:    61 GRRQLETYSAPGIKDI 76

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000032293 AN10717 [Emericella nidulans (taxid:162425)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 35/76 (46%), Positives = 49/76 (64%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             RLSGLQ++VLSLYR  LR  R K    R   +S   AEF+++ + + +K+F  IEYLLR+
Sbjct:     3 RLSGLQREVLSLYRKCLREIRKKPIESRNNFKSYARAEFQKHIS-ISKKDFSAIEYLLRK 61

Query:    68 GKKQLEQLQSPNTESL 83
             G +QLE   SP   ++
Sbjct:    62 GSRQLEMYSSPGIRNI 77

GO:0005739 "mitochondrion" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=IEA

RGD|1559845 RGD1559845 "similar to SPBPJ4664.02" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             RLS LQ+QVLSLYR  LRA R K  A+ R     V AEFR++++ + R + L IEYL RR
Sbjct:     3 RLSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHAS-LPRSDVLRIEYLYRR 56

Query:    68 GKKQLEQLQSPNTESL 83
             G++QL+ L+S +  ++
Sbjct:    57 GRRQLQLLRSGHATAM 72

GO:0005739 "mitochondrion" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=ISS

RGD|1562079 Sdhaf1 "succinate dehydrogenase complex assembly factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             RLS LQ+QVLSLYR  LRA R K  A+ R     V AEFR++++ + R + L IEYL RR
Sbjct:     3 RLSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHAS-LPRSDVLRIEYLYRR 56

Query:    68 GKKQLEQLQSPNTESL 83
             G++QL+ L+S +  ++
Sbjct:    57 GRRQLQLLRSGHATAM 72

GO:0005739 "mitochondrion" evidence=ISO

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=ISO

UNIPROTKB|A6NFY7 SDHAF1 "Succinate dehydrogenase assembly factor 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             R S LQ+QVLSLYR  LRA R K  A+ R     V AEFR+++  + R + L IEYL RR
Sbjct:     3 RHSRLQRQVLSLYRDLLRAGRGKPGAEAR-----VRAEFRQHAG-LPRSDVLRIEYLYRR 56

Query:    68 GKKQLEQLQSPNTESL 83
             G++QL+ L+S +  ++
Sbjct:    57 GRRQLQLLRSGHATAM 72

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=NAS

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

DICTYBASE|DDB_G0289475 sdhaf1A "putative mitochondrial succinate dehydrogenase assembly factor 1A" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/72 (43%), Positives = 44/72 (61%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAAD-RRQIESIVSAEFRRNSNQVDRKNFLYIEYLLR 66
             R SGLQK VLSLYR FLR +  K   +    I + +  +FR  +  + +++   IE LL 
Sbjct:     7 RHSGLQKAVLSLYRSFLRVSNKKEMDNPSSSISNYIKTQFRLKATTIQKRDINKIESLLV 66

Query:    67 RGKKQLEQLQSP 78
             +GK+QLEQ+Q P
Sbjct:    67 KGKRQLEQIQDP 78

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A8PU71 SDHAF1 "Succinate dehydrogenase assembly factor 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             R S LQ+QVLSLYR  LRA R K  A+ R     V AEFR+++  + R + L IEYL RR
Sbjct:     3 RHSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHAC-LPRSDVLRIEYLYRR 56

Query:    68 GKKQLEQLQSPNTESL 83
             G++QL+ L+S +  ++
Sbjct:    57 GRRQLQMLRSGHATAM 72

GO:0005739 "mitochondrion" evidence=ISS

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

POMBASE|SPAC664.12c SPAC664.12c "mitochondrial succinate dehydrogenase assembly factor 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query:     9 LSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRG 68
             LSGLQ+QV+  YR  L AA+ K      +  + V  EFR+N   + +++F YIE+LLR G
Sbjct:     3 LSGLQRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKNQT-ISKRDFFYIEHLLRVG 61

Query:    69 KKQLEQLQSPNTESL 83
             ++Q E    P  + +
Sbjct:    62 QRQYEAYSRPEVKDI 76

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=ISS

UNIPROTKB|F1RLD9 SDHAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query:     8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
             R S LQ+QVLSLYR  LRA R K  A+ R     V AEFR+++  + R + L IEYL RR
Sbjct:     3 RHSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHAC-LPRSDVLRIEYLYRR 56

Query:    68 GKKQLEQLQSPNTESL 83
             G++QL+ L+S +  ++
Sbjct:    57 GRRQLQLLRSGHATAM 72

GO:0034553 "mitochondrial respiratory chain complex II assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9US02	SDHF1_SCHPO	No assigned EC number	0.3815	0.8426	0.9493	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	1e-10
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	4e-09

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 51.8 bits (125), Expect = 1e-10
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 14 KQVLSLYRGFLRAARCKSAADRRQ-IESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQL 72
          K+VLSLYR  LRAAR     + R+ I   +  EFR+N +     +   IE LL+ GKKQL
Sbjct: 1  KEVLSLYRQLLRAARKFPDYNFREYIRRRIRDEFRKNKDL---TDPEKIEKLLKEGKKQL 57

Query: 73 EQLQ 76
          E L+
Sbjct: 58 ELLK 61

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 47.6 bits (114), Expect = 4e-09
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 14 KQVLSLYRGFLRAARCKSAADRRQ-IESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQL 72
          K+VLSLYR  LR AR     + R+     +  EFR+N N     +   IE LL+ GKKQL
Sbjct: 1  KEVLSLYRQLLREARKFPDYNAREYFRRRIRDEFRKNKN---LTDPEKIEALLKEGKKQL 57

Query: 73 EQ 74
          E 
Sbjct: 58 EV 59

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG4620	80	consensus Uncharacterized conserved protein [Funct	99.89
KOG3801	94	consensus Uncharacterized conserved protein BCN92	99.78
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.71
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.69
KOG3426	124	consensus NADH:ubiquinone oxidoreductase, NDUFA6/B	98.28
KOG4100	125	consensus Uncharacterized conserved protein [Funct	97.82
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	97.64
KOG3466	157	consensus NADH:ubiquinone oxidoreductase, NDUFB9/B	97.15
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	94.94
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	83.5

>KOG4620 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=5.4e-23  Score=127.76  Aligned_cols=80  Identities=49%  Similarity=0.731  Sum_probs=74.2

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhCCccccccc
Q 034609            6 GPRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSPNTESLSQ   85 (89)
Q Consensus         6 ~~r~s~lq~~VLsLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~~~v~~~~~   85 (89)
                      +.|+||||+|||+|||++||+|+.+|..+...|..+|++||+.+. .+|++|+-.||+||+.|+++|+.+.+|.+++||-
T Consensus         1 ~~rlSgLQrqVlhlYR~~lraa~~Kp~~~~~~~m~fvh~EFrk~~-~lpr~Df~~IEhLlRvG~rq~~~~s~pe~t~ih~   79 (80)
T KOG4620|consen    1 MSRLSGLQRQVLHLYRDLLRAARGKPGAEARRWMAFVHAEFRKHA-GLPRSDFLRIEHLLRVGRRQLQLLSSPEATAIHA   79 (80)
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhc-CCcHhHHHHHHHHHHHhHHHHHHhcCcchhhccc
Confidence            578999999999999999999999998777789999999996666 6799999999999999999999999999999985


Q ss_pred             c
Q 034609           86 T   86 (89)
Q Consensus        86 ~   86 (89)
                      |
T Consensus        80 ~   80 (80)
T KOG4620|consen   80 F   80 (80)
T ss_pred             C
Confidence            4

>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]

Probab=99.78  E-value=4.1e-19  Score=114.27  Aligned_cols=70  Identities=30%  Similarity=0.336  Sum_probs=66.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCC-hHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 034609           10 SGLQKQVLSLYRGFLRAARCKS-AADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSPNTES   82 (89)
Q Consensus        10 s~lq~~VLsLYR~~LR~ar~~p-~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~~~v~~   82 (89)
                      +..+++||+|||.+||++..|| +|+|+|+.+++|+.||+|+..   +||..|+.++.+|+++|+.|++|+|.+
T Consensus         3 ~~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~---~Dp~e~~~l~~eakk~LevikRQ~ii~   73 (94)
T KOG3801|consen    3 MVSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNV---CDPAEIKKLYKEAKKQLEVIKRQSIIG   73 (94)
T ss_pred             cccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999 799999999999999999988   999999999999999999999998864

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.71  E-value=4.2e-17  Score=96.96  Aligned_cols=60  Identities=40%  Similarity=0.495  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHhcCC-hHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhh
Q 034609           14 KQVLSLYRGFLRAARCKS-AADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQ   76 (89)
Q Consensus        14 ~~VLsLYR~~LR~ar~~p-~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~   76 (89)
                      ++||+|||++||+++.+| ++.|.|+..+||++|+.|+..   +||+.|+.++..|+.+|++|+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~---td~~~i~~~l~~~~~~L~~l~   61 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNV---TDPEKIAKLLKEGRKELELLR   61 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHHHHcC
Confidence            379999999999999999 699999999999999999987   999999999999999999874

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.69  E-value=9.6e-17  Score=94.15  Aligned_cols=58  Identities=43%  Similarity=0.657  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHhcCCh-HhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHH
Q 034609           14 KQVLSLYRGFLRAARCKSA-ADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQ   74 (89)
Q Consensus        14 ~~VLsLYR~~LR~ar~~p~-~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~   74 (89)
                      ++||+|||++||+++.+|. +.+.++..+||++|++|+.+   +||..|+.++..|+..|+|
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~---~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNE---TDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhcC
Confidence            4799999999999999996 56999999999999999987   9999999999999999975

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]

Probab=98.28  E-value=2.8e-06  Score=57.08  Aligned_cols=64  Identities=22%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCC--hH----hHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhh
Q 034609           10 SGLQKQVLSLYRGFLRAARCKS--AA----DRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQ   76 (89)
Q Consensus        10 s~lq~~VLsLYR~~LR~ar~~p--~~----~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~   76 (89)
                      ...++.||.|||.+.|....+-  ++    .-..++..||++|+.|...   |||-.|+.|+-+|..+|+.+-
T Consensus        20 ~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hv---TD~rViDlLV~kg~~elkeiv   89 (124)
T KOG3426|consen   20 TEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHV---TDPRVIDLLVIKGMEELKEIV   89 (124)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCc---CCchhhhHHHHhhHHHHHHHH
Confidence            4568899999999999987654  12    2345678999999777766   999999999999999998763

>KOG4100 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00014  Score=48.94  Aligned_cols=60  Identities=28%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhCC
Q 034609           15 QVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSP   78 (89)
Q Consensus        15 ~VLsLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~~   78 (89)
                      .|--|||.+||..+.+|++.|..--.||++|||.++..    +|..+.-.|..=..=..+|..|
T Consensus        11 rvrlLYkriLrlHr~lp~~~R~lGD~YVkdEFrrHk~v----np~~~~~FlteW~~Ya~~l~qq   70 (125)
T KOG4100|consen   11 RVRLLYKRILRLHRGLPAELRALGDQYVKDEFRRHKTV----NPLEAQGFLTEWERYAVALSQQ   70 (125)
T ss_pred             hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHhccC----ChHHHHHHHHHHHHHHHHHHHH
Confidence            35569999999999999999999999999999877744    6788877777666666666553

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=97.64  E-value=0.0002  Score=45.93  Aligned_cols=61  Identities=30%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhcCChHh--------HHHHHHHH----HHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhCCc
Q 034609           16 VLSLYRGFLRAARCKSAAD--------RRQIESIV----SAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSPN   79 (89)
Q Consensus        16 VLsLYR~~LR~ar~~p~~~--------R~y~~~~i----R~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~~~   79 (89)
                      |++|||.+||+.+.+|...        +..+..+|    +.+|+.+...   +|+..+...+...+.=+..++.+.
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~---~~~~~~~~~~~~~~~y~~~L~~qr   73 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSA---NDEEEAQEFLQEWENYATFLKNQR   73 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999887422        26778888    9999665544   457777777777777777776664

>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]

Probab=97.15  E-value=0.0022  Score=44.69  Aligned_cols=64  Identities=25%  Similarity=0.301  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCh--HhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhCC
Q 034609           11 GLQKQVLSLYRGFLRAARCKSA--ADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSP   78 (89)
Q Consensus        11 ~lq~~VLsLYR~~LR~ar~~p~--~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~~   78 (89)
                      ..+++|+.||+.+||..-.+-.  |.=.|..=-||.-|-+|. +   .|...+.-||..|+++|=....+
T Consensus        11 shkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~-~---kD~~k~~~LLa~ge~E~w~~rHp   76 (157)
T KOG3466|consen   11 SHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDEND-E---KDVDKAIRLLAEGERELWEWRHP   76 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhh-h---hhHHHHHHHHHHHHHHHHhhcCC
Confidence            4578899999999999988762  444466677899995554 5   69999999999999998766544

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=94.94  E-value=0.25  Score=29.19  Aligned_cols=49  Identities=24%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHhcCC--hHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHH
Q 034609           14 KQVLSLYRGFLRAARCKS--AADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLL   65 (89)
Q Consensus        14 ~~VLsLYR~~LR~ar~~p--~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll   65 (89)
                      .....||..+|+....+|  ..+|.+.-..+++-+.--..+   .|.+.||..|
T Consensus         5 ~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~---~d~~~iE~~i   55 (57)
T PF04716_consen    5 EALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEE---EDIEKIEKKI   55 (57)
T ss_pred             HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHcc---ccHHHHHHHh
Confidence            356789999999999999  499999999999999666766   8999999865

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=83.50  E-value=8.2  Score=23.81  Aligned_cols=56  Identities=21%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             HHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhC
Q 034609           21 RGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQS   77 (89)
Q Consensus        21 R~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~   77 (89)
                      -..+-.+.....+....++..+...| ..-+.|++.+++.....|.+.+.+|+.++.
T Consensus        16 ~~~~~~~~~~~~e~e~~~r~~l~~~l-~kldlVtREEFd~q~~~L~~~r~kl~~LEa   71 (79)
T PF04380_consen   16 SEALPAAQGPREEIEKNIRARLQSAL-SKLDLVTREEFDAQKAVLARTREKLEALEA   71 (79)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHH-HHCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444443333466666777888888 778899999999999999999999998864

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00