Citrus Sinensis ID: 034626

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYDV
Secondary Structure (PSIPRED)
cccccHHccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHEccccccccc
Coil and Loop (DISEMBL)
mwklkqlvagdeereesfledesdgicslSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRyracsankydv
Flexible Loop (DISEMBL)
mwklkqlvagdeereesfledesdGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLryracsankydv
Low Complexity Region (SEG)
MWKLKQLVAGdeereesfledesdGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYDV
Disordered region (IsUnstruct)
************************GICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACS******
Disordered Region (DISOPRED)
***LKQL******************ICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYD*
Disordered Region (DISEMBL)
***********************DGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYDV
Disordered Region (DISPRO)
**************EESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSAN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYDV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
O95562	160	Vesicle transport protein	yes	no	0.820	0.456	0.333	5e-06
Q8VD57	159	Vesicle transport protein	yes	no	0.820	0.459	0.320	4e-05

>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 3  KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
          KLK++++G +  + S L +  +   SLS++ R+  F AC   G++C  L  ++   P K 
Sbjct: 3  KLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKG 61

Query: 62 ---FAILFTFGNLLAVGS 76
             FA+ +TFGN+ ++GS
Sbjct: 62 LHLFAVFYTFGNIASIGS 79

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.
Homo sapiens (taxid: 9606)

>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 3  KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
          KLK++++G +  + S L +  +   SLS+  R+  F AC   G++C  L  ++   P K 
Sbjct: 3  KLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKG 61

Query: 62 ---FAILFTFGNLLAVGS 76
             FA+ +T GN++++GS
Sbjct: 62 LGLFAVFYTLGNIMSIGS 79

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
255544984	215	Vesicle transport protein SFT2A, putativ	0.853	0.353	0.697	5e-22
225455094	160	PREDICTED: vesicle transport protein SFT	0.842	0.468	0.675	1e-21
351727108	161	uncharacterized protein LOC100527819 [Gl	0.966	0.534	0.574	4e-21
217071622	162	unknown [Medicago truncatula] gi|3885211	1.0	0.549	0.571	2e-19
449455944	160	PREDICTED: vesicle transport protein SFT	0.887	0.493	0.544	5e-19
224132890	161	predicted protein [Populus trichocarpa]	0.853	0.472	0.766	1e-18
224120726	161	predicted protein [Populus trichocarpa]	0.853	0.472	0.662	3e-18
147773248	183	hypothetical protein VITISV_028882 [Viti	0.842	0.409	0.613	3e-18
56783916	141	hypothetical protein [Oryza sativa Japon	0.865	0.546	0.575	3e-18
297596337	166	Os01g0219100 [Oryza sativa Japonica Grou	0.831	0.445	0.597	4e-18

>gi|255544984|ref|XP_002513553.1| Vesicle transport protein SFT2A, putative [Ricinus communis] gi|223547461|gb|EEF48956.1| Vesicle transport protein SFT2A, putative [Ricinus communis]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 62/76 (81%)

Query: 1  MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
          M KLKQ ++GD+  E    ++ESD  CSLS TQRMYAFAACL+AGL  MFLS+IV +RPI
Sbjct: 1  MQKLKQFISGDDGEEGLLDDEESDSYCSLSPTQRMYAFAACLVAGLASMFLSVIVLLRPI 60

Query: 61 KFAILFTFGNLLAVGS 76
          KFA+LFTFGNLLAVGS
Sbjct: 61 KFAVLFTFGNLLAVGS 76

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455094|ref|XP_002267997.1| PREDICTED: vesicle transport protein SFT2B [Vitis vinifera] gi|302144038|emb|CBI23143.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)

Query: 1  MWKLKQ-LVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
          MW L Q ++ G+EE  E +LED SDG+C+LS  QRMY FAACL+AG  CM LS+IVF +P
Sbjct: 1  MWNLGQSILGGNEEDREEYLED-SDGLCNLSPVQRMYGFAACLVAGFACMLLSLIVFAKP 59

Query: 60 IKFAILFTFGNLLAVGS 76
          IKFA+LFTFGNLLAVGS
Sbjct: 60 IKFAVLFTFGNLLAVGS 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727108|ref|NP_001237917.1| uncharacterized protein LOC100527819 [Glycine max] gi|255633298|gb|ACU17006.1| unknown [Glycine max]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 1  MWKLKQLVAGD-EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
          MW + + + GD E++EE  L ++S G+CSLS TQR+Y FA+CL+AGL CM LS+IVF +P
Sbjct: 1  MWNIARTLTGDNEDQEEGLLGEDSGGLCSLSTTQRIYGFASCLVAGLACMLLSMIVFAKP 60

Query: 60 IKFAILFTFGNLLAVGSLRYRACSANK 86
          IKFA LFTFGNLLAVGS  +    A +
Sbjct: 61 IKFAALFTFGNLLAVGSTAFLLGPAQQ 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071622|gb|ACJ84171.1| unknown [Medicago truncatula] gi|388521121|gb|AFK48622.1| unknown [Medicago truncatula]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 67/91 (73%), Gaps = 2/91 (2%)

Query: 1  MWK-LKQLVAGD-EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVR 58
          MWK L + ++GD EE+EES L + S G+ SL+ TQRMY FAACL+AGL  M LS+IVF +
Sbjct: 1  MWKKLGESLSGDNEEQEESLLGEGSGGLSSLTTTQRMYGFAACLIAGLALMLLSMIVFAK 60

Query: 59 PIKFAILFTFGNLLAVGSLRYRACSANKYDV 89
          PIKFA+LFTFGNL AVGS  +    A + ++
Sbjct: 61 PIKFAVLFTFGNLSAVGSTAFLLGPAQQMEM 91

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455944|ref|XP_004145710.1| PREDICTED: vesicle transport protein SFT2B-like [Cucumis sativus] gi|449507616|ref|XP_004163083.1| PREDICTED: vesicle transport protein SFT2B-like [Cucumis sativus]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 1  MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
          MWKL + V  DEER +S L+++S+ +CSL+  QR+YAF  CL  G+VCM LS++VF +P+
Sbjct: 1  MWKLSEGVFVDEERSQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMILSLLVFAKPL 60

Query: 61 KFAILFTFGNLLAVGSLRY 79
          K A+LF FGN+LAVGS  +
Sbjct: 61 KLAVLFAFGNVLAVGSTTF 79

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132890|ref|XP_002321435.1| predicted protein [Populus trichocarpa] gi|222868431|gb|EEF05562.1| predicted protein [Populus trichocarpa]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 67/77 (87%), Gaps = 1/77 (1%)

Query: 1  MWKLKQLVAGDE-EREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
          MWKL Q + GD+ EREESFLE+ESDGI SLS TQRMYAFAA L AGL+ MFLS+IVF +P
Sbjct: 1  MWKLNQFIPGDDGEREESFLEEESDGIFSLSPTQRMYAFAASLAAGLILMFLSLIVFAKP 60

Query: 60 IKFAILFTFGNLLAVGS 76
          IKFA+LFTFGN+LAVGS
Sbjct: 61 IKFALLFTFGNVLAVGS 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120726|ref|XP_002318402.1| predicted protein [Populus trichocarpa] gi|222859075|gb|EEE96622.1| predicted protein [Populus trichocarpa]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 1  MWKLKQLVAGDEEREESFLEDE-SDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
          MWKL   ++GD+E  E    +E SDG+CSLS TQRMYAFAA L+AGL  MFLS+IVF +P
Sbjct: 1  MWKLNHFLSGDDEEREESFLEEESDGLCSLSPTQRMYAFAASLVAGLALMFLSLIVFAKP 60

Query: 60 IKFAILFTFGNLLAVGS 76
          IK+A+LFTFGN+LAVGS
Sbjct: 61 IKYALLFTFGNVLAVGS 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773248|emb|CAN69293.1| hypothetical protein VITISV_028882 [Vitis vinifera]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 56/75 (74%)

Query: 1  MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
          MW L Q + G  E +     ++SDG+C+LS  QRMY FAACL+AG  CM LS+IVF +PI
Sbjct: 1  MWNLGQSILGGNEEDREEXLEDSDGLCNLSPVQRMYGFAACLVAGFACMLLSLIVFAKPI 60

Query: 61 KFAILFTFGNLLAVG 75
          KFA+LFTFGNLLAVG
Sbjct: 61 KFAVLFTFGNLLAVG 75

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56783916|dbj|BAD81353.1| hypothetical protein [Oryza sativa Japonica Group] gi|56784090|dbj|BAD81419.1| hypothetical protein [Oryza sativa Japonica Group]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 62/80 (77%), Gaps = 3/80 (3%)

Query: 3  KLKQLVAG---DEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
          +L + +AG   DEE+ E  +  +++GICSLS  QR+Y FAACL+AGL  M LS++VFVRP
Sbjct: 6  RLHRALAGGDDDEEQPEDSILGDTEGICSLSPVQRVYGFAACLVAGLALMILSLVVFVRP 65

Query: 60 IKFAILFTFGNLLAVGSLRY 79
          IKFA++FTFGN+LAVGS  +
Sbjct: 66 IKFAVMFTFGNILAVGSTAF 85

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297596337|ref|NP_001042417.2| Os01g0219100 [Oryza sativa Japonica Group] gi|215768762|dbj|BAH00991.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187760|gb|EEC70187.1| hypothetical protein OsI_00920 [Oryza sativa Indica Group] gi|222617994|gb|EEE54126.1| hypothetical protein OsJ_00900 [Oryza sativa Japonica Group] gi|255673004|dbj|BAF04331.2| Os01g0219100 [Oryza sativa Japonica Group]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 61/77 (79%), Gaps = 3/77 (3%)

Query: 3  KLKQLVAG---DEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
          +L + +AG   DEE+ E  +  +++GICSLS  QR+Y FAACL+AGL  M LS++VFVRP
Sbjct: 6  RLHRALAGGDDDEEQPEDSILGDTEGICSLSPVQRVYGFAACLVAGLALMILSLVVFVRP 65

Query: 60 IKFAILFTFGNLLAVGS 76
          IKFA++FTFGN+LAVGS
Sbjct: 66 IKFAVMFTFGNILAVGS 82

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2151837	163	AT5G24170 "AT5G24170" [Arabido	0.617	0.337	0.672	6.9e-15
TAIR|locus:2171706	175	AT5G23550 "AT5G23550" [Arabido	0.595	0.302	0.547	8.2e-12
DICTYBASE|DDB_G0291055	158	DDB_G0291055 "SFT2 family prot	0.539	0.303	0.5	7.6e-09
UNIPROTKB|F1PKN6	140	SFT2D2 "Uncharacterized protei	0.550	0.35	0.415	3.4e-06
UNIPROTKB|O95562	160	SFT2D2 "Vesicle transport prot	0.842	0.468	0.312	7e-06
UNIPROTKB|Q5TIH2	108	SFT2D2 "Vesicle transport prot	0.842	0.694	0.312	7e-06
UNIPROTKB|F1RPV2	159	SFT2D2 "Uncharacterized protei	0.842	0.471	0.325	2.4e-05
UNIPROTKB|F6RF48	160	SFT2D2 "Uncharacterized protei	0.842	0.468	0.325	3e-05
MGI|MGI:1917362	159	Sft2d2 "SFT2 domain containing	0.842	0.471	0.3	5e-05
RGD|1310623	157	Sft2d2 "SFT2 domain containing	0.876	0.496	0.283	6.3e-05

TAIR|locus:2151837 AT5G24170 "AT5G24170" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query:    25 GICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRY 79
             G+C+LS TQRMY FAA L  GL+ MFLS+IVF  PIKFA+LFTFGN+LA+GS  +
Sbjct:    28 GLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLFTFGNVLAIGSTAF 82

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2171706 AT5G23550 "AT5G23550" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 29/53 (54%), Positives = 37/53 (69%)

Query:    27 CSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRY 79
             C+L+  QR Y FA CL AGL C  LS++VF  P+KF I FT GNL+A+GS  +
Sbjct:    42 CALTTKQRFYGFAICLSAGLTCTLLSMLVFFNPVKFGITFTLGNLMALGSTAF 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0291055 DDB_G0291055 "SFT2 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query:    27 CSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAV 74
             CSL++TQR+  FA C   GL+  FLS++ F+ P  FA+LFT G++L V
Sbjct:    27 CSLTFTQRVIGFAVCAALGLLFAFLSLMFFISPTTFALLFTLGDILMV 74

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1PKN6 SFT2D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query:    28 SLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK----FAILFTFGNLLAVGS 76
             SLS++ R+  F AC  AG+VC  L  ++   P K    FA+ +TFGN+ ++GS
Sbjct:     7 SLSWSTRIKGFIACFAAGIVCSLLGTLLLWVPRKGLYLFAVFYTFGNIASIGS 59

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95562 SFT2D2 "Vesicle transport protein SFT2B" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS++ R+  F AC   G++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGS 76
             K    FA+ +TFGN+ ++GS
Sbjct:    60 KGLHLFAVFYTFGNIASIGS 79

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5TIH2 SFT2D2 "Vesicle transport protein SFT2B" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS++ R+  F AC   G++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGS 76
             K    FA+ +TFGN+ ++GS
Sbjct:    60 KGLHLFAVFYTFGNIASIGS 79

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1RPV2 SFT2D2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS   R+  F AC  AG++C  L   +   P 
Sbjct:     1 MDKLKKVLSGQDAEDRGGLSEVAEAT-SLSSGTRIKGFIACFAAGILCSLLGTFLLWVPQ 59

Query:    61 K----FAILFTFGNLLAVGS 76
             K    FA+ +TFGN+ ++GS
Sbjct:    60 KGLYLFAVFYTFGNIASIGS 79

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6RF48 SFT2D2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS   R+  F AC  AG++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDSEDRGGLSEVVEAT-SLSSGTRIKGFIACFAAGILCSLLGTLLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGS 76
             K    FA+ +TFGN+ ++GS
Sbjct:    60 KGLYLFAVFYTFGNIASLGS 79

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917362 Sft2d2 "SFT2 domain containing 2" [Mus musculus (taxid:10090)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS+  R+  F AC   G++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGS 76
             K    FA+ +T GN++++GS
Sbjct:    60 KGLGLFAVFYTLGNIMSIGS 79

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|1310623 Sft2d2 "SFT2 domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 23/81 (28%), Positives = 43/81 (53%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFL-SIIVFV-R 58
             M KLK++++G                 SLS++ R+  F  C   G++C  L +++++V R
Sbjct:     1 MDKLKKVLSGQDTEDRSGLSEVVES-SSLSWSTRIKGFIVCFALGILCSLLGTLLLWVSR 59

Query:    59 PIKFAILFTFGNLLAVGSLRY 79
                FA+ +T GN+ ++GS  +
Sbjct:    60 KGLFAVFYTLGNITSIGSTMF 80

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
COG5102	201	COG5102, SFT2, Membrane protein involved in ER to	2e-06
pfam04178	116	pfam04178, Got1, Got1/Sft2-like family	0.001

>gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 28  SLSYTQRMYAFAACLLAGLVCM----FLSIIVFVRPIKFAILFTFGNLLAV 74
            LS  +R   F+ACLL    C     F+  ++ ++P KF +L+T G+LL V
Sbjct: 61  GLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFV 111

Length = 201

>gnl|CDD|217941 pfam04178, Got1, Got1/Sft2-like family

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 43 LAGLVCMFLSIIVFVRPI----KFAILFTFGNLLAVGSL 77
            G++   L       P+     FA+L T GN+L +GS 
Sbjct: 1  KIGVLFFGLGFFFLFLPVLLLFPFALLLTLGNILFLGST 39

Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG2887	175	consensus Membrane protein involved in ER to Golgi	99.93
COG5102	201	SFT2 Membrane protein involved in ER to Golgi tran	99.54
PF04178	118	Got1: Got1/Sft2-like family ; InterPro: IPR007305	99.43
PF14145	59	YrhK: YrhK-like protein	84.07

>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=6.3e-26  Score=163.43  Aligned_cols=89  Identities=38%  Similarity=0.662  Sum_probs=73.3

Q ss_pred             Ccccc-------ccccCChhh---hhhhh-hcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHH
Q 034626            1 MWKLK-------QLVAGDEER---EESFL-EDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RPIKFAIL   65 (89)
Q Consensus         1 m~~l~-------~l~~~~~~~---e~~~~-~~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~~----~p~kFA~l   65 (89)
                      |||++       +++|+|..|   |+.+. .+.+++.++|||+||+++|++|++.|++|+.+|+++++    .|+|||++
T Consensus         1 md~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~~kFal~   80 (175)
T KOG2887|consen    1 MDKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSPRKFALL   80 (175)
T ss_pred             CchhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeehh
Confidence            66764       566776433   22233 33455679999999999999999999999999999775    56699999


Q ss_pred             HhhhHHHHHHhHHHhhchhhhhcC
Q 034626           66 FTFGNLLAVGSLRYRACSANKYDV   89 (89)
Q Consensus        66 yTlG~il~l~s~~fL~Gp~~q~k~   89 (89)
                      ||+||+++++||+||+||++|+|.
T Consensus        81 ~TlGnll~i~sf~fLmGP~~ql~~  104 (175)
T KOG2887|consen   81 YTLGNLLAIGSFAFLMGPVSQLKH  104 (175)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999973

>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]

Probab=99.54  E-value=9.1e-15  Score=106.28  Aligned_cols=68  Identities=26%  Similarity=0.354  Sum_probs=60.0

Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhccchhHHHHhhhHHHHHHhHHHhhchhhhhc
Q 034626           21 DESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIV----FVRPIKFAILFTFGNLLAVGSLRYRACSANKYD   88 (89)
Q Consensus        21 ~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~----~~~p~kFA~lyTlG~il~l~s~~fL~Gp~~q~k   88 (89)
                      +.+.+.++||++||...|.+|+..+..|+.++.++    -++||||.++||+||++++.++++|+||.+|+|
T Consensus        54 ~~q~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~  125 (201)
T COG5102          54 YFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLE  125 (201)
T ss_pred             ccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHH
Confidence            34556899999999999999988888898666553    369999999999999999999999999999986

>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae

Probab=99.43  E-value=1.8e-13  Score=92.72  Aligned_cols=48  Identities=31%  Similarity=0.667  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHhhhHHHHHHhHHHhhchhhhhc
Q 034626           40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYD   88 (89)
Q Consensus        40 ~c~~~g~~~~~ls~~~~~~p~kFA~lyTlG~il~l~s~~fL~Gp~~q~k   88 (89)
                      +|.++|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|
T Consensus         5 ~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k   52 (118)
T PF04178_consen    5 ICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFK   52 (118)
T ss_pred             HHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555665555555444 89999999999999999999999999999987

Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport

>PF14145 YrhK: YrhK-like protein

Probab=84.07  E-value=5.3  Score=24.00  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccchhHHHHhhhHHHH-HHhHHHhhchhhh
Q 034626           40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLA-VGSLRYRACSANK   86 (89)
Q Consensus        40 ~c~~~g~~~~~ls~~~~~~p~kFA~lyTlG~il~-l~s~~fL~Gp~~q   86 (89)
                      +.-.+|.++++++.++++.+.    +++.|.+++ ++|..|+.+|.-+
T Consensus        10 ~~d~~~~~~FliGSilfl~~~----~~~~g~wlFiiGS~~f~i~~~i~   53 (59)
T PF14145_consen   10 VNDFIGGLLFLIGSILFLPES----LYTAGTWLFIIGSILFLIRPIIR   53 (59)
T ss_pred             HHHHHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566677777777666552    446666654 4566777777544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00