Citrus Sinensis ID: 034630

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQHAKEHGH
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccHHcccHccHHHHHHHHHHHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSLRRIYNEVkgmkvkelpnylkpmfsmnYVKQTVQRGLDNyhakyiqtssfdpvyHVCIGGMIFSYLVALPEERRHLEHQQHAKEHGH
Flexible Loop (DISEMBL)
mslrriynevkgmkvkelpnylkPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQqhakehgh
Low Complexity Region (SEG)
MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQHAKEHGH
Disordered region (IsUnstruct)
*****IYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVAL******************
Disordered Region (DISOPRED)
*********VKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEER**************
Disordered Region (DISEMBL)
MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRH************
Disordered Region (DISPRO)
*SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQHA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQHAKEHGH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
255573767	89	conserved hypothetical protein [Ricinus	1.0	1.0	0.764	1e-35
224090519	90	predicted protein [Populus trichocarpa]	0.988	0.977	0.738	3e-35
224144334	145	predicted protein [Populus trichocarpa]	0.988	0.606	0.75	3e-35
118488880	90	unknown [Populus trichocarpa x Populus d	0.988	0.977	0.75	4e-35
225470664	92	PREDICTED: uncharacterized protein LOC10	0.988	0.956	0.727	2e-34
30841448	90	fiber protein Fb15 [Gossypium barbadense	1.0	0.988	0.707	3e-34
449457195	90	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.715	4e-33
297803038	90	hypothetical protein ARALYDRAFT_491755 [	0.988	0.977	0.727	1e-31
15233805	90	uncharacterized protein [Arabidopsis tha	0.988	0.977	0.704	5e-31
356556238	89	PREDICTED: uncharacterized protein LOC10	0.977	0.977	0.670	2e-30

>gi|255573767|ref|XP_002527804.1| conserved hypothetical protein [Ricinus communis] gi|223532800|gb|EEF34576.1| conserved hypothetical protein [Ricinus communis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 81/89 (91%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M+LRR YNE+KG+KVKE+PN++KPM S++Y+K++V R LDNY+ KYIQT S DP+YHVC 
Sbjct: 1  MALRRFYNEIKGLKVKEVPNHVKPMLSLDYLKKSVGRALDNYNEKYIQTGSIDPLYHVCF 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGH 89
          GGMIFSYLVALPEERRHLEHQQHAKEHGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGH 89

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090519|ref|XP_002309011.1| predicted protein [Populus trichocarpa] gi|222854987|gb|EEE92534.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 81/88 (92%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M+LR+ Y+E+KG+KVKE PN++KPM S++YVK++VQRG+DNYHAKYI+TSS DPVYHVC 
Sbjct: 1  MALRKFYSEIKGLKVKEFPNHVKPMLSLDYVKKSVQRGMDNYHAKYIETSSVDPVYHVCF 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
          GGM+ SY +ALPEERRHLEHQQH+KEHG
Sbjct: 61 GGMVLSYFLALPEERRHLEHQQHSKEHG 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144334|ref|XP_002325265.1| predicted protein [Populus trichocarpa] gi|222866699|gb|EEF03830.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 81/88 (92%)

Query: 1   MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
           M+LR++Y+E+KG+KVKELP+++KPM S+ YVK+ VQRG+DNYHAKYI+TSS DP+ HVC 
Sbjct: 56  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 115

Query: 61  GGMIFSYLVALPEERRHLEHQQHAKEHG 88
           GGMI SYL+ALPEERRHLEHQQHAKEHG
Sbjct: 116 GGMILSYLIALPEERRHLEHQQHAKEHG 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488880|gb|ABK96249.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 81/88 (92%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M+LR++Y+E+KG+KVKELP+++KPM S+ YVK+ VQRG+DNYHAKYI+TSS DP+ HVC 
Sbjct: 1  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
          GGMI SYL+ALPEERRHLEHQQHAKEHG
Sbjct: 61 GGMILSYLIALPEERRHLEHQQHAKEHG 88

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470664|ref|XP_002268964.1| PREDICTED: uncharacterized protein LOC100260603 isoform 1 [Vitis vinifera] gi|359484972|ref|XP_003633192.1| PREDICTED: uncharacterized protein LOC100260603 isoform 2 [Vitis vinifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 81/88 (92%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M++R  YNE++G+KVKELP ++KPMF+++Y+K+++ +GLDNYHAKYIQTSS DP+ HVC 
Sbjct: 1  MAMRNFYNEIRGLKVKELPAHVKPMFTIDYIKKSINKGLDNYHAKYIQTSSIDPLLHVCY 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
          GG+IFSYLVALPEERRHLEHQQHAKEHG
Sbjct: 61 GGIIFSYLVALPEERRHLEHQQHAKEHG 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30841448|gb|AAP34362.1| fiber protein Fb15 [Gossypium barbadense]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 81/89 (91%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M++R++Y+E+KGMK+KE+P Y KPM SM Y+K++VQRGLDNYHAKYI+T S +P+YHVC 
Sbjct: 1  MAMRKVYSEIKGMKLKEVPGYFKPMLSMGYLKKSVQRGLDNYHAKYIETDSIEPLYHVCF 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGH 89
          GGMIFSYLVALP ERRHLEH++HA++HGH
Sbjct: 61 GGMIFSYLVALPNERRHLEHKKHAEQHGH 89

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457195|ref|XP_004146334.1| PREDICTED: uncharacterized protein LOC101202935 [Cucumis sativus] gi|449502973|ref|XP_004161794.1| PREDICTED: uncharacterized protein LOC101223947 isoform 1 [Cucumis sativus] gi|449502976|ref|XP_004161795.1| PREDICTED: uncharacterized protein LOC101223947 isoform 2 [Cucumis sativus]

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 78/88 (88%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M++++ ++E+KG+KVKELP Y+KPM S++  K+ V+R LDNY+AKYIQTSS DP+ HVC 
Sbjct: 1  MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKAVERSLDNYNAKYIQTSSIDPLLHVCF 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
          GGMIFSYLVALPEERRHLEHQQHAKEHG
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803038|ref|XP_002869403.1| hypothetical protein ARALYDRAFT_491755 [Arabidopsis lyrata subsp. lyrata] gi|297315239|gb|EFH45662.1| hypothetical protein ARALYDRAFT_491755 [Arabidopsis lyrata subsp. lyrata]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 73/88 (82%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M+LRR+Y+E+KG KV ELP YLK  FSM  VK +V+RGLDNY+ KYIQTSS DP+ H+C 
Sbjct: 1  MALRRVYSEIKGKKVTELPGYLKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
           GM FSYLVALP ERRHLEHQQHAKEHG
Sbjct: 61 YGMAFSYLVALPNERRHLEHQQHAKEHG 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233805|ref|NP_194730.1| uncharacterized protein [Arabidopsis thaliana] gi|14190501|gb|AAK55731.1|AF380650_1 AT4g30010/F6G3_40 [Arabidopsis thaliana] gi|4938477|emb|CAB43836.1| putative protein [Arabidopsis thaliana] gi|7269901|emb|CAB80994.1| putative protein [Arabidopsis thaliana] gi|15809752|gb|AAL06804.1| AT4g30010/F6G3_40 [Arabidopsis thaliana] gi|21555729|gb|AAM63922.1| unknown [Arabidopsis thaliana] gi|332660308|gb|AEE85708.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M+LRR+Y+E++G KV ELP Y+K  FSM  VK +V+RGLDNY+ KYIQTSS DP+ H+C 
Sbjct: 1  MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
           GM FSYLVALP ERRHLEHQQHAKEHG
Sbjct: 61 YGMAFSYLVALPNERRHLEHQQHAKEHG 88

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556238|ref|XP_003546433.1| PREDICTED: uncharacterized protein LOC100527402 [Glycine max] gi|255632268|gb|ACU16492.1| unknown [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 77/88 (87%), Gaps = 1/88 (1%)

Query: 1  MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
          M++RR YNE+KG +V E+P ++KPM S+NY+K+ +QRG DNYHAKYI+TSS DP++HVC 
Sbjct: 1  MAMRRFYNEIKGKRVSEVPEHVKPMLSLNYIKKAIQRGFDNYHAKYIETSSPDPIFHVCY 60

Query: 61 GGMIFSYLVALPEERRHLEH-QQHAKEH 87
          GGMIFSYLVALP ERRHL+H Q+HA++H
Sbjct: 61 GGMIFSYLVALPHERRHLQHAQEHAQQH 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2126475	90	AT4G30010 "AT4G30010" [Arabido	0.988	0.977	0.704	2.6e-31
RGD|1596067	88	Atp5j2 "ATP synthase, H+ trans	0.797	0.806	0.294	0.00057
MGI|MGI:1927558	88	Atp5j2 "ATP synthase, H+ trans	0.842	0.852	0.309	0.00073

TAIR|locus:2126475 AT4G30010 "AT4G30010" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query:     1 MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCI 60
             M+LRR+Y+E++G KV ELP Y+K  FSM  VK +V+RGLDNY+ KYIQTSS DP+ H+C 
Sbjct:     1 MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query:    61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88
              GM FSYLVALP ERRHLEHQQHAKEHG
Sbjct:    61 YGMAFSYLVALPNERRHLEHQQHAKEHG 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009536 "plastid" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

RGD|1596067 Atp5j2 "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2" [Rattus norvegicus (taxid:10116)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query:    13 MKVKELPNY-LKPMFSMNYVKQTVQRGLDNYHAKYIQT--SSFDPVYHVCIGGMIFSYLV 69
             +K++ELP++ L   F+ + +    +RG D Y+ KYI     S   +  V    ++FSY +
Sbjct:    15 VKLRELPSWILMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGINMVLAAYVVFSYCI 74

Query:    70 ALPEERRHLEHQQHAKEH 87
             +  E    L+H++  K H
Sbjct:    75 SYKE----LKHERRRKYH 88

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISO

MGI|MGI:1927558 Atp5j2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2" [Mus musculus (taxid:10090)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query:     9 EVKGMKVK--ELPNYLKPM-FSMNYVKQTVQRGLDNYHAKYIQT--SSFDPVYHVCIGGM 63
             E K M+VK  ELP+++    F+ + +    +RG D Y+ KYI     S   +  V    +
Sbjct:     9 EKKLMEVKLGELPSWIMMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYV 68

Query:    64 IFSYLVALPEERRHLEHQQHAKEH 87
             +FSY ++  E    L+H++  K H
Sbjct:    69 VFSYCISYKE----LKHERRRKYH 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       89        89   0.00091  102 3  11 22  0.44    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.96u 0.13s 11.09t   Elapsed:  00:00:02
  Total cpu time:  10.96u 0.13s 11.09t   Elapsed:  00:00:02
  Start:  Thu May  9 21:39:20 2013   End:  Thu May  9 21:39:22 2013

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PF10206	104	WRW: Mitochondrial F1F0-ATP synthase, subunit f; I	99.97
KOG4092	108	consensus Mitochondrial F1F0-ATP synthase, subunit	99.96
PF10791	95	F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase su	99.23

>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans

Probab=99.97  E-value=7.7e-32  Score=183.23  Aligned_cols=72  Identities=31%  Similarity=0.546  Sum_probs=67.9

Q ss_pred             HHhhcCcccccccccc-CCCCHHHHHHHHHhHHHHHHHhhhc--cCCccHHHHHHHHHHHHHHhhcchhHhHHHHHHHh
Q 034630            8 NEVKGMKVKELPNYLK-PMFSMNYVKQTVQRGLDNYHAKYIQ--TSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQH   83 (89)
Q Consensus         8 ~~l~~vKl~ElP~wl~-~~~sp~~i~~a~~r~~~rY~~KYi~--~gs~aPl~hvl~g~~lfsY~i~y~~ey~HlkH~~~   83 (89)
                      .+|+||||+|||+|++ ||+||.++.++++|++|||++|||+  |+||+|++||++|+|+|+|++||.    |+||||+
T Consensus        29 t~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~~Kr~gia~~~~v~~g~~~~~Y~~~Y~----~lkh~r~  103 (104)
T PF10206_consen   29 TPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYINVKRGGIAPFFQVLAGYMVFSYCINYK----HLKHHRN  103 (104)
T ss_pred             CchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhceecCCcchhHHHHHHHHHHHHHHhhc----HhhhccC
Confidence            3699999999999999 7799999999999999999999999  999999999999999999996555    9999986

Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.

>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]

Probab=99.96  E-value=1.9e-29  Score=170.83  Aligned_cols=76  Identities=29%  Similarity=0.449  Sum_probs=71.3

Q ss_pred             HHhhcCcccccccccc-CCCCHHHHHHHHHhHHHHHHHhhhc---cCCccHHHHHHHHHHHHHHhhcchhHhHHHHHHHh
Q 034630            8 NEVKGMKVKELPNYLK-PMFSMNYVKQTVQRGLDNYHAKYIQ---TSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQH   83 (89)
Q Consensus         8 ~~l~~vKl~ElP~wl~-~~~sp~~i~~a~~r~~~rY~~KYi~---~gs~aPl~hvl~g~~lfsY~i~y~~ey~HlkH~~~   83 (89)
                      ..++||||||||+|+. |++||++|.++++|++|||++|||+   +|||+||+|+++++++|+|+++|.    |+||||.
T Consensus        29 ~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~if~~~~ay~~f~yl~~y~----~lkh~r~  104 (108)
T KOG4092|consen   29 KKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGIFMVLAAYVLFSYLFSYK----HLKHERL  104 (108)
T ss_pred             ceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHHHHHHHHHHHHHHHHHHH----HHHHhhh
Confidence            3589999999999999 6699999999999999999999999   999999999999999999996555    9999999


Q ss_pred             hHhh
Q 034630           84 AKEH   87 (89)
Q Consensus        84 ~k~~   87 (89)
                      +|+|
T Consensus       105 ~kYH  108 (108)
T KOG4092|consen  105 RKYH  108 (108)
T ss_pred             hccC
Confidence            9986

>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.23  E-value=7.5e-12  Score=84.18  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=36.8

Q ss_pred             HHHHHHHhhhc--cCCccHHHHHHHHHHHHHHhhcchhHhHHHH
Q 034630           38 GLDNYHAKYIQ--TSSFDPVYHVCIGGMIFSYLVALPEERRHLE   79 (89)
Q Consensus        38 ~~~rY~~KYi~--~gs~aPl~hvl~g~~lfsY~i~y~~ey~Hlk   79 (89)
                      .+.||++||+|  |+|.+||+|+++|+++|+|++||+   +|||
T Consensus        55 ~~grYkakYFdGkNaSgkPllHli~~l~~iGYs~eYy---fHLr   95 (95)
T PF10791_consen   55 LLGRYKAKYFDGKNASGKPLLHLIGGLFLIGYSIEYY---FHLR   95 (95)
T ss_pred             hHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHhH---hhcC
Confidence            37899999997  999999999999999999999999   9986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00