Citrus Sinensis ID: 034663

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERCY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MAVNQAAIAKVGLSLLGLCLfgyivgpplywhfmegldavshssaatcppcvcdcssqpllsipdglgnasitgyfpyqnltvkercy
Flexible Loop (DISEMBL)
MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASItgyfpyqnltvkercy
Low Complexity Region (SEG)
MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERCY
Disordered region (IsUnstruct)
*****AAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTV*****
Disordered Region (DISOPRED)
***********GLSLLGLCLFGYIVGPPLYWHFMEG**********TCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERCY
Disordered Region (DISEMBL)
MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERCY
Disordered Region (DISPRO)
*A**QAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERCY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERCY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
255576895	188	conserved hypothetical protein [Ricinus	0.795	0.372	0.736	3e-24
224068963	181	predicted protein [Populus trichocarpa]	0.761	0.370	0.661	6e-18
302144099	907	unnamed protein product [Vitis vinifera]	0.715	0.069	0.656	6e-17
351722314	189	uncharacterized protein LOC100527412 [Gl	0.806	0.375	0.635	1e-16
388511573	186	unknown [Lotus japonicus]	0.772	0.365	0.597	2e-16
388510556	193	unknown [Medicago truncatula]	0.818	0.373	0.545	4e-16
388494918	193	unknown [Medicago truncatula]	0.806	0.367	0.552	5e-16
240255748	176	uncharacterized protein [Arabidopsis tha	0.784	0.392	0.583	6e-16
18403016	183	uncharacterized protein [Arabidopsis tha	0.772	0.371	0.616	3e-15
297823033	183	hypothetical protein ARALYDRAFT_482183 [	0.761	0.366	0.611	9e-15

>gi|255576895|ref|XP_002529333.1| conserved hypothetical protein [Ricinus communis] gi|223531204|gb|EEF33050.1| conserved hypothetical protein [Ricinus communis]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 60/72 (83%), Gaps = 2/72 (2%)

Query: 3  VNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAA--TCPPCVCDCSSQPL 60
          +NQA + KVGL L+GLCLFGY++GPPLYWHF E L AVSHSS++  TC PCVCDCSSQPL
Sbjct: 1  MNQAGVVKVGLGLMGLCLFGYLLGPPLYWHFKEALAAVSHSSSSYNTCSPCVCDCSSQPL 60

Query: 61 LSIPDGLGNASI 72
          LSIP GL NAS 
Sbjct: 61 LSIPQGLSNASF 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068963|ref|XP_002302867.1| predicted protein [Populus trichocarpa] gi|118486963|gb|ABK95314.1| unknown [Populus trichocarpa] gi|222844593|gb|EEE82140.1| predicted protein [Populus trichocarpa]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 4  NQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSI 63
           QAA  KVGL L+ +C+ GYI+GPPLYWH  EG  AV+ SS   C PC CDCSSQPLLSI
Sbjct: 6  QQAAAVKVGLGLMAVCIAGYILGPPLYWHLKEGFVAVARSS-PICSPCDCDCSSQPLLSI 64

Query: 64 PDGLGNAS 71
          P GL NAS
Sbjct: 65 PQGLSNAS 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 10  KVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGN 69
           KV +++LGLCL  YIV PPLYWH  EG+ AVS  S  +CPPC+CDCSS PLLSIP+GL N
Sbjct: 739 KVAMTVLGLCLAAYIVAPPLYWHITEGVAAVSRDS-FSCPPCLCDCSSHPLLSIPEGLSN 797

Query: 70  ASIT 73
            S T
Sbjct: 798 NSFT 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722314|ref|NP_001235704.1| uncharacterized protein LOC100527412 [Glycine max] gi|27922919|gb|AAO24648.1| unknown protein [Phytophthora sojae] gi|255632288|gb|ACU16502.1| unknown [Glycine max]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 58/74 (78%), Gaps = 3/74 (4%)

Query: 1  MAVNQAAIAKVGLSLLGLCLF--GYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQ 58
          MA+NQ+    + +SL+ + LF  GYIVGPPLYWHF+EGL AV+HSS +TC PC+CDCSSQ
Sbjct: 1  MALNQSKAVLLRVSLVVVALFIAGYIVGPPLYWHFVEGLAAVNHSS-STCAPCICDCSSQ 59

Query: 59 PLLSIPDGLGNASI 72
          P+LSIP GL N S 
Sbjct: 60 PILSIPQGLSNTSF 73

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511573|gb|AFK43848.1| unknown [Lotus japonicus]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 54/72 (75%), Gaps = 4/72 (5%)

Query: 3  VNQAAIA--KVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSS-QP 59
          +NQ  +A  +VGL ++ LC+  YI+ PPLYWHF EGL AV HSS ++C PC+CDCSS QP
Sbjct: 1  MNQTGVAVLRVGLVVVALCIASYILAPPLYWHFREGLAAVKHSS-SSCAPCLCDCSSQQP 59

Query: 60 LLSIPDGLGNAS 71
          +LSIP GL N S
Sbjct: 60 ILSIPQGLSNTS 71

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510556|gb|AFK43344.1| unknown [Medicago truncatula]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%)

Query: 1  MAVNQAAIA--KVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSH---SSAATCPPCVCDC 55
          MA+N++++   +  L ++ +C+ GYI+GPPLYWHF EGL AV H   SS++TC PC+CDC
Sbjct: 1  MAMNKSSVTLLRATLIIVAVCIAGYILGPPLYWHFKEGLAAVKHSSSSSSSTCSPCLCDC 60

Query: 56 SSQPLLSIPDGLGNASI 72
          SSQP  SIP GL N S 
Sbjct: 61 SSQPTFSIPQGLSNISF 77

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494918|gb|AFK35525.1| unknown [Medicago truncatula]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 5/76 (6%)

Query: 1  MAVNQAAIA--KVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSH---SSAATCPPCVCDC 55
          MA+N++++   +  L ++ +C+ GYI+GPPLYWHF EGL AV H   SS++TC PC+CDC
Sbjct: 1  MAMNKSSVTLLRATLIIVAVCIAGYILGPPLYWHFKEGLAAVKHSSSSSSSTCSPCLCDC 60

Query: 56 SSQPLLSIPDGLGNAS 71
          SSQP  SIP GL N S
Sbjct: 61 SSQPTFSIPQGLSNIS 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255748|ref|NP_192345.4| uncharacterized protein [Arabidopsis thaliana] gi|332656984|gb|AEE82384.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 1  MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
          M   Q   AKV   ++GLC+  YI GP LYWH  E +    HSS   CPPCVCDCSSQPL
Sbjct: 1  MTRRQKKTAKVVTVVMGLCIVAYIAGPSLYWHLNETIADSLHSS---CPPCVCDCSSQPL 57

Query: 61 LSIPDGLGNASI 72
          LSIPDGL N S 
Sbjct: 58 LSIPDGLSNHSF 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403016|ref|NP_565746.1| uncharacterized protein [Arabidopsis thaliana] gi|20197239|gb|AAC25940.2| expressed protein [Arabidopsis thaliana] gi|20259343|gb|AAM13996.1| unknown protein [Arabidopsis thaliana] gi|21689677|gb|AAM67460.1| unknown protein [Arabidopsis thaliana] gi|110743618|dbj|BAE99646.1| hypothetical protein [Arabidopsis thaliana] gi|330253607|gb|AEC08701.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 52/73 (71%), Gaps = 5/73 (6%)

Query: 1  MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
          MA + AA+ KVGL+LL L + GYI+GPPLYWH  E L AV   SA +C  CVCDCSS PL
Sbjct: 1  MAKHTAAL-KVGLALLALSMIGYILGPPLYWHLTEAL-AV---SATSCSACVCDCSSLPL 55

Query: 61 LSIPDGLGNASIT 73
          L+IP GL N S T
Sbjct: 56 LTIPTGLSNGSFT 68

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823033|ref|XP_002879399.1| hypothetical protein ARALYDRAFT_482183 [Arabidopsis lyrata subsp. lyrata] gi|297325238|gb|EFH55658.1| hypothetical protein ARALYDRAFT_482183 [Arabidopsis lyrata subsp. lyrata]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 51/72 (70%), Gaps = 5/72 (6%)

Query: 1  MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
          MA + AA+ KVGL+LL L + GYI+GPPLYWH  E L AV   SA +C  CVCDCSS PL
Sbjct: 1  MAKHTAAL-KVGLALLALSMIGYILGPPLYWHLTEAL-AV---SATSCSACVCDCSSSPL 55

Query: 61 LSIPDGLGNASI 72
          L+IP GL N S 
Sbjct: 56 LTIPTGLSNGSF 67

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2060268	183	AT2G32580 "AT2G32580" [Arabido	0.772	0.371	0.616	2e-17
TAIR|locus:2134837	176	AT4G04360 "AT4G04360" [Arabido	0.772	0.386	0.591	2.5e-17
TAIR|locus:2205543	184	AT1G05070 "AT1G05070" [Arabido	0.761	0.364	0.563	2e-15
TAIR|locus:505006538	172	NKS1 "AT4G30996" [Arabidopsis	0.556	0.284	0.470	1.4e-07
TAIR|locus:2061027	173	AT2G24290 "AT2G24290" [Arabido	0.579	0.294	0.461	1.8e-07

TAIR|locus:2060268 AT2G32580 "AT2G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/73 (61%), Positives = 52/73 (71%)

Query:     1 MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
             MA + AA+ KVGL+LL L + GYI+GPPLYWH  E L AVS   A +C  CVCDCSS PL
Sbjct:     1 MAKHTAAL-KVGLALLALSMIGYILGPPLYWHLTEAL-AVS---ATSCSACVCDCSSLPL 55

Query:    61 LSIPDGLGNASIT 73
             L+IP GL N S T
Sbjct:    56 LTIPTGLSNGSFT 68

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2134837 AT4G04360 "AT4G04360" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 42/71 (59%), Positives = 46/71 (64%)

Query:     1 MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
             M   Q   AKV   ++GLC+  YI GP LYWH  E +    HSS   CPPCVCDCSSQPL
Sbjct:     1 MTRRQKKTAKVVTVVMGLCIVAYIAGPSLYWHLNETIADSLHSS---CPPCVCDCSSQPL 57

Query:    61 LSIPDGLGNAS 71
             LSIPDGL N S
Sbjct:    58 LSIPDGLSNHS 68

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205543 AT1G05070 "AT1G05070" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/71 (56%), Positives = 50/71 (70%)

Query:     1 MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
             MA + AA+ K+GL+LLGL + GYI+GPPLYWH  E L AVS SS   CP C C+CS+   
Sbjct:     1 MARHTAAL-KIGLALLGLSMAGYILGPPLYWHLTEALAAVSASS---CPSCPCECSTYSA 56

Query:    61 LSIPDGLGNAS 71
             ++IP  L NAS
Sbjct:    57 VTIPKELSNAS 67

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:505006538 NKS1 "AT4G30996" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/51 (47%), Positives = 30/51 (58%)

Query:    24 IVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQ-PLLSIPDGLGNASIT 73
             + GP LYW F +G    + +++  CPPCVCDC     LL I  GL N SIT
Sbjct:    23 VCGPALYWKFNKGFVGSTRANSL-CPPCVCDCPPPLSLLQIAPGLANLSIT 72

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043182 "vacuolar sequestering of sodium ion" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2061027 AT2G24290 "AT2G24290" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 24/52 (46%), Positives = 29/52 (55%)

Query:    24 IVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQ-PLLSIPDGLGNASITG 74
             + GP LYW   +G    + S+ + CPPCVCD      LL I  GL N SITG
Sbjct:    23 VCGPALYWKLNKGFVGSARSTNSICPPCVCDFPPPLSLLQIAPGLANLSITG 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.463    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.44    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:00
  Total cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:00
  Start:  Mon May 20 17:41:21 2013   End:  Mon May 20 17:41:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002078 SubName- Full=Putative uncharacterized protein; (182 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam06364	176	pfam06364, DUF1068, Protein of unknown function (D	2e-25

>gnl|CDD|115046 pfam06364, DUF1068, Protein of unknown function (DUF1068)

 Score = 92.4 bits (229), Expect = 2e-25
 Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)

Query: 1  MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
          MA + AA+ K GL+LLGL + GYI+GPPLYWH  E L  V   SA +CP C CDCS++PL
Sbjct: 1  MAPHTAAL-KAGLALLGLSMAGYILGPPLYWHLTEALARV---SAGSCPACDCDCSARPL 56

Query: 61 LSIPDGLGNASIT 73
          L+IP  L NAS  
Sbjct: 57 LTIPKELSNASFE 69

This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF06364	176	DUF1068: Protein of unknown function (DUF1068); In	100.0
KOG1823	1364	consensus DRIM (Down-regulated in metastasis)-like	98.05

>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa

Probab=100.00  E-value=5.4e-36  Score=222.70  Aligned_cols=74  Identities=62%  Similarity=1.093  Sum_probs=68.5

Q ss_pred             CchhHHHHHHHHHHHHhheeeeCCcceeeehhhhccccCCCCCCCCCcccCCCCCCCccccccCCCcCccCCCCCCC
Q 034663            4 NQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQN   80 (88)
Q Consensus         4 ~~~~~lr~~Lvllav~~a~yIvGPpLYW~~~e~l~~~~~sss~sCppC~CDCss~~Ll~ip~gL~N~S~~DC~k~~~   80 (88)
                      .+++++||+|||||+++++||+|||||||++|+++++   ++++||||+||||++||++||+||+|+||+||||+|.
T Consensus         3 ~s~~~lr~~l~llal~~a~yivGP~LYWh~~~~~~~~---s~~sCppC~CDCs~~~ll~ip~gl~N~S~~DC~k~dP   76 (176)
T PF06364_consen    3 PSPAALRVVLVLLALCLAGYIVGPPLYWHLSEGLAAV---SSSSCPPCDCDCSSQPLLSIPPGLSNLSFTDCGKHDP   76 (176)
T ss_pred             CChhHHHHHHHHHHHHHHhheeCchHHHHHHHhhhcc---cCCCCCCCCCCCCCHHHHHhcccccccchHhhccCCh
Confidence            3567999999999999999999999999999999864   4568999999999999999999999999999999984

The function of this family is unknown.

>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]

Probab=98.05  E-value=5.6e-07  Score=82.62  Aligned_cols=72  Identities=22%  Similarity=0.406  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHhheeeeCCcceeeehhhhccccCCCCCCCCCcccCCCCC-CCccccccCCCcCccCCCCCCC
Q 034663            6 AAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQ-PLLSIPDGLGNASITGYFPYQN   80 (88)
Q Consensus         6 ~~~lr~~Lvllav~~a~yIvGPpLYW~~~e~l~~~~~sss~sCppC~CDCss~-~Ll~ip~gL~N~S~~DC~k~~~   80 (88)
                      .+-.+..+++.+.....+|.||++||++++++++..   +.+||+|.|||.++ .+.++.|++.+...+|||..+.
T Consensus      1195 l~~~~~~~~l~~qv~~~li~~~~l~~~~~~~~~~~~---~~~~~~c~~e~~~~~~~~~~~p~~~~~i~~~~~~~d~ 1267 (1364)
T KOG1823|consen 1195 LRSSKFDLVLGAQVAKNLIFGPALLWNLRENLEALI---SEICPACRCECMEKKACSQLLPLFALVIDEDCGQVDD 1267 (1364)
T ss_pred             HccCcHHHHHHHHHhhheeecHHHHHHHHhhcchhh---hhhhhhhhhhhhhhhhhhhhcchhhhccchhhcccCc
Confidence            344567899999999999999999999999997653   23499999999877 8999999999999999999874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00