Citrus Sinensis ID: 034719


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80------
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccc
MALIFLFWFLMSAINIALIASTFYQLLCLldlesddinpfeassrinfwvepEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFllqglfcilllVTGHWIMFLLGVPLVCYHVNL
**LIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV**
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query86 2.2.26 [Sep-21-2011]
Q9C7D7146 Protein cornichon homolog yes no 1.0 0.589 0.511 4e-19
Q84W04137 Protein cornichon homolog no no 0.825 0.518 0.521 3e-14
Q9SZ74135 Protein cornichon homolog no no 0.813 0.518 0.528 9e-14
Q8GWT5137 Protein cornichon homolog no no 0.732 0.459 0.571 3e-13
Q3EDD7129 Probable protein cornicho no no 0.790 0.527 0.485 1e-12
P53173138 ER-derived vesicles prote yes no 0.639 0.398 0.436 1e-07
Q9CX13139 Protein cornichon homolog yes no 0.930 0.575 0.373 2e-06
Q3T126139 Protein cornichon homolog yes no 0.790 0.489 0.382 3e-06
Q6P3N5139 Protein cornichon homolog yes no 0.790 0.489 0.367 5e-06
Q5R9M4139 Protein cornichon homolog yes no 0.790 0.489 0.382 5e-06
>sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1 Back     alignment and function desciption
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 60/86 (69%)

Query: 1  MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLF 60
          MA     W +   +++AL+AS FYQ++CL DLE+D +NPFE S+RIN  V PEF+LQG  
Sbjct: 1  MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query: 61 CILLLVTGHWIMFLLGVPLVCYHVNL 86
          C+L L+T HW+ FL+ VP+  YH  L
Sbjct: 61 CLLFLLTWHWVFFLVAVPVTVYHAML 86





Arabidopsis thaliana (taxid: 3702)
>sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZ74|CNIH5_ARATH Protein cornichon homolog 5 OS=Arabidopsis thaliana GN=At4g12090 PE=2 SV=2 Back     alignment and function description
>sp|Q8GWT5|CNIH3_ARATH Protein cornichon homolog 3 OS=Arabidopsis thaliana GN=At1g62880 PE=2 SV=1 Back     alignment and function description
>sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2 OS=Arabidopsis thaliana GN=At1g12340 PE=2 SV=2 Back     alignment and function description
>sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3 Back     alignment and function description
>sp|Q9CX13|CNIH4_MOUSE Protein cornichon homolog 4 OS=Mus musculus GN=Cnih4 PE=2 SV=1 Back     alignment and function description
>sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1 Back     alignment and function description
>sp|Q6P3N5|CNIH4_XENTR Protein cornichon homolog 4 OS=Xenopus tropicalis GN=cnih4 PE=2 SV=1 Back     alignment and function description
>sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
351721034139 uncharacterized protein LOC100527262 [Gl 1.0 0.618 0.574 7e-21
388522853149 unknown [Lotus japonicus] 0.837 0.483 0.680 9e-21
356500457149 PREDICTED: protein cornichon homolog 1-l 0.941 0.543 0.621 3e-20
449453824154 PREDICTED: protein cornichon homolog 1-l 1.0 0.558 0.581 3e-20
351725425149 uncharacterized protein LOC100500341 pre 0.941 0.543 0.634 3e-20
449453826146 PREDICTED: protein cornichon homolog 1-l 1.0 0.589 0.581 3e-20
357509819142 ER-derived vesicles protein ERV14 [Medic 1.0 0.605 0.586 6e-20
217073988142 unknown [Medicago truncatula] 1.0 0.605 0.586 6e-20
147841607160 hypothetical protein VITISV_035789 [Viti 0.918 0.493 0.582 3e-19
297739714152 unnamed protein product [Vitis vinifera] 0.918 0.519 0.582 3e-19
>gi|351721034|ref|NP_001237196.1| uncharacterized protein LOC100527262 [Glycine max] gi|255631904|gb|ACU16319.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 1  MALIFLFWFLMS-AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGL 59
          M L   FWF++   +N A +ASTFYQ+L L DLE+D INP++A+SRIN+++ PEF+ QGL
Sbjct: 1  MGLDLFFWFVLCLPLNFAFLASTFYQVLMLSDLEADFINPYDAASRINYFIVPEFIGQGL 60

Query: 60 FCILLLVTGHWIMFLLGVPLVCYHVNL 86
           C   L+TGHWIMFL+ VP+ CYHV L
Sbjct: 61 LCAFCLLTGHWIMFLITVPVTCYHVML 87




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522853|gb|AFK49488.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356500457|ref|XP_003519048.1| PREDICTED: protein cornichon homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449453824|ref|XP_004144656.1| PREDICTED: protein cornichon homolog 1-like isoform 1 [Cucumis sativus] gi|449499426|ref|XP_004160813.1| PREDICTED: protein cornichon homolog 1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|351725425|ref|NP_001236580.1| uncharacterized protein LOC100500341 precursor [Glycine max] gi|255630079|gb|ACU15393.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449453826|ref|XP_004144657.1| PREDICTED: protein cornichon homolog 1-like isoform 2 [Cucumis sativus] gi|449499429|ref|XP_004160814.1| PREDICTED: protein cornichon homolog 1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357509819|ref|XP_003625198.1| ER-derived vesicles protein ERV14 [Medicago truncatula] gi|124360135|gb|ABN08151.1| Cornichon [Medicago truncatula] gi|355500213|gb|AES81416.1| ER-derived vesicles protein ERV14 [Medicago truncatula] gi|388494654|gb|AFK35393.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073988|gb|ACJ85354.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|147841607|emb|CAN64231.1| hypothetical protein VITISV_035789 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739714|emb|CBI29896.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
TAIR|locus:2082199146 AT3G12180 "AT3G12180" [Arabido 1.0 0.589 0.441 2.9e-16
TAIR|locus:2034660137 AT1G12390 [Arabidopsis thalian 0.918 0.576 0.430 3.9e-12
TAIR|locus:2118101135 AT4G12090 "AT4G12090" [Arabido 0.941 0.6 0.419 6.4e-12
TAIR|locus:2015514137 AT1G62880 "AT1G62880" [Arabido 0.918 0.576 0.443 8.2e-12
TAIR|locus:2034655129 AT1G12340 "AT1G12340" [Arabido 0.790 0.527 0.426 5.2e-10
FB|FBgn0243513157 cnir "cornichon related" [Dros 0.767 0.420 0.393 2.2e-09
SGD|S000003022138 ERV14 "COPII-coated vesicle pr 0.941 0.586 0.309 6.8e-08
MGI|MGI:1925828139 Cnih4 "cornichon homolog 4 (Dr 0.930 0.575 0.349 8.7e-08
RGD|1559740139 Cnih4 "cornichon homolog 4 (Dr 0.930 0.575 0.337 8.7e-08
UNIPROTKB|E1C103139 CNIH4 "Uncharacterized protein 0.883 0.546 0.337 1.4e-07
TAIR|locus:2082199 AT3G12180 "AT3G12180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 38/86 (44%), Positives = 52/86 (60%)

Query:     1 MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFXXXXXX 60
             MA     W +   +++AL+AS FYQ++CL DLE+D +NPFE S+RIN  V PEF      
Sbjct:     1 MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query:    61 XXXXXVTGHWIMFLLGVPLVCYHVNL 86
                  +T HW+ FL+ VP+  YH  L
Sbjct:    61 CLLFLLTWHWVFFLVAVPVTVYHAML 86




GO:0003674 "molecular_function" evidence=ND
GO:0016020 "membrane" evidence=ISS
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
TAIR|locus:2034660 AT1G12390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118101 AT4G12090 "AT4G12090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015514 AT1G62880 "AT1G62880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034655 AT1G12340 "AT1G12340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0243513 cnir "cornichon related" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000003022 ERV14 "COPII-coated vesicle protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1925828 Cnih4 "cornichon homolog 4 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1559740 Cnih4 "cornichon homolog 4 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C103 CNIH4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT3G12180
cornichon family protein; cornichon family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- intracellular signaling cascade; LOCATED IN- endomembrane system, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Cornichon (InterPro-IPR003377); BEST Arabidopsis thaliana protein match is- cornichon family protein (TAIR-AT1G12390.1); Has 450 Blast hits to 450 proteins in 121 species- Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 30 (source- NCBI BLink). (146 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G66070
translation initiation factor-related; translation initiation factor-related; FUNCTIONS IN- mol [...] (226 aa)
       0.462
AT4G26410
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (263 aa)
       0.462
AT3G55960
NLI interacting factor (NIF) family protein; NLI interacting factor (NIF) family protein; FUNCT [...] (305 aa)
       0.460
AT5G12010
unknown protein; unknown protein; INVOLVED IN- response to salt stress; LOCATED IN- chloroplast [...] (502 aa)
       0.456
MAPKKK7
MAPKKK7; ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase/ prote [...] (1368 aa)
       0.456
AT2G20930
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport, ER to Golgi [...] (140 aa)
       0.435
AT1G68730
zinc finger (DNL type) family protein; zinc finger (DNL type) family protein; LOCATED IN- chlor [...] (170 aa)
       0.430
MIS12
MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE); encodes a homologue of the yeast (S. pombe) [...] (285 aa)
       0.424
AT3G59000
F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (491 aa)
       0.417
YAB5
YAB5 (YABBY5); transcription factor; YABBY5 (YAB5); FUNCTIONS IN- transcription factor activity [...] (164 aa)
       0.417

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
pfam03311128 pfam03311, Cornichon, Cornichon protein 2e-23
PLN00174160 PLN00174, PLN00174, predicted protein; Provisional 0.003
>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein Back     alignment and domain information
 Score = 85.7 bits (213), Expect = 2e-23
 Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 1  MALIFLFWFLMS-AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGL 59
          MA  F   ++++  IN AL+    Y ++ L DLE+D INP +  SR+N  V PE++L G 
Sbjct: 1  MAFEFWLLYILALLINAALLFLQVYFVIMLSDLEADYINPIDLCSRLNPLVLPEYILHGF 60

Query: 60 FCILLLVTGHWIMFLLGVPLVCYHVNL 86
           C+L L+TGHW +FLL +PL+ Y+V L
Sbjct: 61 LCLLFLLTGHWFVFLLNLPLLAYNVYL 87


Length = 128

>gnl|CDD|177769 PLN00174, PLN00174, predicted protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 86
KOG2729137 consensus ER vesicle integral membrane protein inv 100.0
PF03311128 Cornichon: Cornichon protein; InterPro: IPR003377 100.0
PLN00174160 predicted protein; Provisional 99.96
PF0140529 PsbT: Photosystem II reaction centre T protein; In 82.98
PRK1187531 psbT photosystem II reaction center protein T; Rev 81.32
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
Probab=100.00  E-value=1e-38  Score=221.41  Aligned_cols=86  Identities=45%  Similarity=0.860  Sum_probs=83.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034719            1 MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLV   80 (86)
Q Consensus         1 m~~~~~~~i~all~~~~ll~~~vy~li~l~DLe~D~iNp~d~c~~lN~lv~PE~~~h~~l~~l~ll~g~W~~~lln~Pl~   80 (86)
                      |.+++++|..+++.+++++++++||+|+++|||+||+||+|+|||+||+|+||++.||++|++++++|||+++++|+|++
T Consensus         3 ~~~~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l   82 (137)
T KOG2729|consen    3 FTFAAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLL   82 (137)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcC
Q 034719           81 CYHVNL   86 (86)
Q Consensus        81 ~y~~~~   86 (86)
                      +||+|+
T Consensus        83 ~y~~~~   88 (137)
T KOG2729|consen   83 AYNAWL   88 (137)
T ss_pred             HHHHHH
Confidence            999974



>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling Back     alignment and domain information
>PLN00174 predicted protein; Provisional Back     alignment and domain information
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae Back     alignment and domain information
>PRK11875 psbT photosystem II reaction center protein T; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
3arc_T32 Photosystem II reaction center protein T; PSII, me 81.66
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T* Back     alignment and structure
Probab=81.66  E-value=2.1  Score=22.46  Aligned_cols=22  Identities=18%  Similarity=0.161  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 034719            4 IFLFWFLMSAINIALIASTFYQ   25 (86)
Q Consensus         4 ~~~~~i~all~~~~ll~~~vy~   25 (86)
                      |++.|.+.++.+.+.+|++|++
T Consensus         2 Ea~vYt~ll~~tlgiiFFAI~F   23 (32)
T 3arc_T            2 ETITYVFIFACIIALFFFAIFF   23 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHhhhh
Confidence            7899999999999999888764




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00