Citrus Sinensis ID: 034777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSID
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEccccccccccc
Coil and Loop (DISEMBL)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSID
Flexible Loop (DISEMBL)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIlskssiemkdsid
Low Complexity Region (SEG)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNflssglagfflfEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSID
Disordered region (IsUnstruct)
*IRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS***********
Disordered Region (DISOPRED)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI*************
Disordered Region (DISEMBL)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS********
Disordered Region (DISPRO)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS*********
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSID
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
224082958	120	predicted protein [Populus trichocarpa]	1.0	0.7	0.809	4e-32
359492195	116	PREDICTED: uncharacterized protein LOC10	1.0	0.724	0.809	6e-32
255538852	117	conserved hypothetical protein [Ricinus	1.0	0.717	0.761	3e-30
388510708	124	unknown [Lotus japonicus]	0.988	0.669	0.759	4e-30
449469907	114	PREDICTED: uncharacterized protein LOC10	1.0	0.736	0.761	1e-28
357518849	120	hypothetical protein MTR_8g085700 [Medic	1.0	0.7	0.738	1e-28
297846056	118	hypothetical protein ARALYDRAFT_473326 [	1.0	0.711	0.738	2e-28
226497922	114	cell growth defect factor 2 [Zea mays] g	0.988	0.728	0.734	4e-28
145361239	118	cell growth defect factor -2 [Arabidopsi	1.0	0.711	0.738	4e-28
4926831	176	T17H7.16 [Arabidopsis thaliana]	1.0	0.477	0.738	6e-28

>gi|224082958|ref|XP_002306907.1| predicted protein [Populus trichocarpa] gi|222856356|gb|EEE93903.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 77/84 (91%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +I+YGLV+LFNV MWGCY+NSL+ LSSLQATVTNFA NFLSSGLAGFFLF+E LS QWFA
Sbjct: 33  VIKYGLVVLFNVTMWGCYVNSLKALSSLQATVTNFAANFLSSGLAGFFLFKETLSVQWFA 92

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL IV+GV+ILSKSSIE K+SID
Sbjct: 93  GALLIVIGVVILSKSSIERKESID 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492195|ref|XP_003634377.1| PREDICTED: uncharacterized protein LOC100259103 isoform 2 [Vitis vinifera] gi|359492197|ref|XP_002280550.2| PREDICTED: uncharacterized protein LOC100259103 isoform 1 [Vitis vinifera] gi|302142607|emb|CBI19810.3| unnamed protein product [Vitis vinifera]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 74/84 (88%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +I+YGLVI+FNV MWGCY+NSL+ LSSLQATVTNFA NFLSSGLAGFFLFEE L FQWFA
Sbjct: 33  VIKYGLVIIFNVTMWGCYVNSLKALSSLQATVTNFAANFLSSGLAGFFLFEEALPFQWFA 92

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL IV+GV ILSKSSIE K S D
Sbjct: 93  GALLIVIGVFILSKSSIERKASTD 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538852|ref|XP_002510491.1| conserved hypothetical protein [Ricinus communis] gi|223551192|gb|EEF52678.1| conserved hypothetical protein [Ricinus communis]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 74/84 (88%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           ++RY +V+LFNV MWGCY+NSLR LSSLQATVTNFATNF+SSGLAG+ +F E LS QWFA
Sbjct: 34  LVRYSVVVLFNVTMWGCYVNSLRALSSLQATVTNFATNFISSGLAGYIMFNETLSAQWFA 93

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL IVVGV+ILSKSSIE K S+D
Sbjct: 94  GALLIVVGVVILSKSSIEQKTSMD 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510708|gb|AFK43420.1| unknown [Lotus japonicus]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query: 2   IRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAG 61
           +RYGLV+LFNV MWGCY+NSL+ LSSLQATVTNFATNF+SSGLAGFF F E LSFQWFAG
Sbjct: 42  VRYGLVLLFNVTMWGCYVNSLKALSSLQATVTNFATNFISSGLAGFFFFREPLSFQWFAG 101

Query: 62  ALFIVVGVLILSKSSIEMKDSID 84
           AL I++GV+ILS SSI+ K + D
Sbjct: 102 ALLIIIGVVILSNSSIKKKVNTD 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469907|ref|XP_004152660.1| PREDICTED: uncharacterized protein LOC101208185 isoform 2 [Cucumis sativus] gi|449514655|ref|XP_004164441.1| PREDICTED: uncharacterized protein LOC101225317 isoform 2 [Cucumis sativus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 73/84 (86%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +IRY LVI FN+AMWGCY+NSL+ LSSLQAT TNF+ NFL SGLAGFFLFEE LSF+WF 
Sbjct: 31  LIRYVLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFRWFV 90

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL IV+GVLIL+KSSIE K+S D
Sbjct: 91  GALLIVIGVLILNKSSIEKKESKD 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518849|ref|XP_003629713.1| hypothetical protein MTR_8g085700 [Medicago truncatula] gi|355523735|gb|AET04189.1| hypothetical protein MTR_8g085700 [Medicago truncatula] gi|388493386|gb|AFK34759.1| unknown [Medicago truncatula]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 70/84 (83%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +I+YG V+ FNV MW CY+NSL+ LSSLQATVTNFATNF+SSGLAGFF F E LSFQWFA
Sbjct: 37  LIKYGFVVFFNVTMWCCYVNSLKALSSLQATVTNFATNFISSGLAGFFFFHEHLSFQWFA 96

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GA  I+VGV+ILS SSIE K S D
Sbjct: 97  GASLIIVGVIILSNSSIEKKVSAD 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846056|ref|XP_002890909.1| hypothetical protein ARALYDRAFT_473326 [Arabidopsis lyrata subsp. lyrata] gi|297336751|gb|EFH67168.1| hypothetical protein ARALYDRAFT_473326 [Arabidopsis lyrata subsp. lyrata]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 72/84 (85%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +I+YGLV++ NV MW CY+NSLR LSSLQATVTNFA NFLSSGLAG FLF+E LSF+WFA
Sbjct: 35  VIKYGLVVICNVVMWACYVNSLRALSSLQATVTNFAANFLSSGLAGLFLFQESLSFRWFA 94

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL I +GVLILSKSS++ K S D
Sbjct: 95  GALSITIGVLILSKSSVDKKVSSD 118

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497922|ref|NP_001147347.1| cell growth defect factor 2 [Zea mays] gi|195610364|gb|ACG27012.1| cell growth defect factor 2 [Zea mays] gi|414864533|tpg|DAA43090.1| TPA: cell growth defect factor 2 [Zea mays]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 70/83 (84%)

Query: 2   IRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAG 61
           ++YG VILFNV MWGCY+NSL+ LSSLQATVTNFA NFLSSGLAG+FLFEE L  +WFAG
Sbjct: 32  LKYGTVILFNVTMWGCYVNSLKALSSLQATVTNFAANFLSSGLAGYFLFEEPLPSKWFAG 91

Query: 62  ALFIVVGVLILSKSSIEMKDSID 84
           A  I++GV ILSKSSIE K + D
Sbjct: 92  ASLIILGVFILSKSSIEEKQNTD 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145361239|ref|NP_683335.2| cell growth defect factor -2 [Arabidopsis thaliana] gi|77999976|dbj|BAE46869.1| cell growth defect factor -2 [Arabidopsis thaliana] gi|332193163|gb|AEE31284.1| cell growth defect factor -2 [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 71/84 (84%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +I+YGLV++ NV MW CY+NSLR LSSLQATVTNFA NFLSSGLAG FLF+E LSF+WFA
Sbjct: 35  VIKYGLVVICNVVMWACYVNSLRALSSLQATVTNFAANFLSSGLAGLFLFQESLSFRWFA 94

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL I  GVLILSKSS++ K S D
Sbjct: 95  GALSITTGVLILSKSSVDKKVSSD 118

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4926831|gb|AAD32941.1|AC004135_16 T17H7.16 [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 71/84 (84%)

Query: 1   MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA 60
           +I+YGLV++ NV MW CY+NSLR LSSLQATVTNFA NFLSSGLAG FLF+E LSF+WFA
Sbjct: 93  VIKYGLVVICNVVMWACYVNSLRALSSLQATVTNFAANFLSSGLAGLFLFQESLSFRWFA 152

Query: 61  GALFIVVGVLILSKSSIEMKDSID 84
           GAL I  GVLILSKSS++ K S D
Sbjct: 153 GALSITTGVLILSKSSVDKKVSSD 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:504956166	118	AT1G30845 "AT1G30845" [Arabido	1.0	0.711	0.607	2.6e-22

TAIR|locus:504956166 AT1G30845 "AT1G30845" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/84 (60%), Positives = 60/84 (71%)

Query:     1 MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNXXXXXXXXXXXXEEQLSFQWFA 60
             +I+YGLV++ NV MW CY+NSLR LSSLQATVTNFA N            +E LSF+WFA
Sbjct:    35 VIKYGLVVICNVVMWACYVNSLRALSSLQATVTNFAANFLSSGLAGLFLFQESLSFRWFA 94

Query:    61 GALFIVVGVLILSKSSIEMKDSID 84
             GAL I  GVLILSKSS++ K S D
Sbjct:    95 GALSITTGVLILSKSSVDKKVSSD 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.137   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       84        72   0.00091  102 3  11 22  0.40    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  465 (50 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.59u 0.11s 5.70t   Elapsed:  00:00:00
  Total cpu time:  5.59u 0.11s 5.70t   Elapsed:  00:00:00
  Start:  Fri May 10 01:09:11 2013   End:  Fri May 10 01:09:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
COG2510	140	Predicted membrane protein [Function unknown]	99.62
PRK09541	110	emrE multidrug efflux protein; Reviewed	99.17
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.17
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	99.16
COG2076	106	EmrE Membrane transporters of cations and cationic	99.13
PRK11431	105	multidrug efflux system protein; Provisional	99.1
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.04
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.01
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.98
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.94
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.81
PRK11272	292	putative DMT superfamily transporter inner membran	98.79
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	98.75
PRK11689	295	aromatic amino acid exporter; Provisional	98.68
PLN00411	358	nodulin MtN21 family protein; Provisional	98.67
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.66
PRK15430	296	putative chloramphenical resistance permease RarD;	98.62
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.62
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.53
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.52
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.52
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.47
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.47
PRK15430	296	putative chloramphenical resistance permease RarD;	98.4
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.38
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.3
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.16
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.13
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.08
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.05
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.03
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.88
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.88
PLN00411	358	nodulin MtN21 family protein; Provisional	97.78
PRK11689	295	aromatic amino acid exporter; Provisional	97.56
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.55
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.46
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.38
PRK11272	292	putative DMT superfamily transporter inner membran	97.36
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.34
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.34
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.31
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.16
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.16
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.1
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.88
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.41
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.38
COG2962	293	RarD Predicted permeases [General function predict	95.45
KOG4831	125	consensus Unnamed protein [Function unknown]	95.39
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.96
PRK13499	345	rhamnose-proton symporter; Provisional	94.95
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.87
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.87
KOG1580	337	consensus UDP-galactose transporter related protei	94.55
COG2962	293	RarD Predicted permeases [General function predict	94.55
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	93.74
KOG3912	372	consensus Predicted integral membrane protein [Gen	93.05
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	92.22
KOG2765	416	consensus Predicted membrane protein [Function unk	91.96
PF01350	144	Flavi_NS4A: Flavivirus non-structural protein NS4A	91.75
KOG2922	335	consensus Uncharacterized conserved protein [Funct	91.03
PRK10532	293	threonine and homoserine efflux system; Provisiona	89.76
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	89.46
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	89.11
PRK13499	345	rhamnose-proton symporter; Provisional	88.24
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	87.32
KOG1582	367	consensus UDP-galactose transporter related protei	84.81
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	84.02
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	83.89
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	81.48

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.62  E-value=1.1e-15  Score=105.12  Aligned_cols=71  Identities=21%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            3 RYGLVILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         3 ~~~l~~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ++++..+.++++|.+|++|||.++ |.++++|++|.  +++++++++++||++|++.|+|+.+|.+|+++++++
T Consensus        69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~sv--vl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~~  140 (140)
T COG2510          69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSV--VLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSLR  140 (140)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccH--HHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEecC
Confidence            567889999999999999999976 79999999995  999999999999999999999999999999988753

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=99.17  E-value=2.4e-10  Score=75.65  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE   78 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~   78 (84)
                      ...+++=+....++.+|+|.-|-.+|...-.+++++.+++.|+++|||++|+.+++|+.+|+.|++.++..+++
T Consensus        34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~~  107 (110)
T PRK09541         34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRS  107 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45677778888999999999998899999999999999999999999999999999999999999999877543

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=99.17  E-value=1.8e-10  Score=75.81  Aligned_cols=71  Identities=24%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .++.+.+-++...++..++|.-|..+|...-. ++++.+++.|+++|||++|+++++|+.+|+.|+++++++
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~~  110 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGST  110 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            34556777888899999999988766666655 889999999999999999999999999999999998864

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=99.16  E-value=2.7e-10  Score=76.69  Aligned_cols=75  Identities=17%  Similarity=0.207  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE   78 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~   78 (84)
                      ..+.+++=+.+..++.+|+|.-|-.+|...=.+++++.+++.|+++|||++|+.+++|+.+|+.|++.++..+++
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~  107 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK  107 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            356677888899999999999888888888888999999999999999999999999999999999999876543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=99.13  E-value=3.2e-10  Score=75.22  Aligned_cols=75  Identities=23%  Similarity=0.175  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777            3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI   77 (84)
Q Consensus         3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~   77 (84)
                      +..+++++=..++.+..+|+|.-|-.+|..+=.+++.+.+++.|+++|+|++|+.+++|+.+|++|++.++..++
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s~  106 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGSR  106 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcCC
Confidence            456788899999999999999999899999999999999999999999999999999999999999999987653

>PRK11431 multidrug efflux system protein; Provisional

Probab=99.10  E-value=6.7e-10  Score=73.12  Aligned_cols=73  Identities=15%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI   77 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~   77 (84)
                      ...+++=+.++.+..+|+|.-|-.+|...=.++|.+.+++.|+++|||++|+++++|+.+|+.|++.++..+|
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~~  105 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLSTH  105 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccCC
Confidence            4567777888999999999989889999999999999999999999999999999999999999999986654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.04  E-value=1.1e-09  Score=80.57  Aligned_cols=80  Identities=11%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC--CCcccc
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS--SIEMKD   81 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~--~~~~~~   81 (84)
                      +.+.++++...|.+|.+++|+.++..+++..... .++++++|+++|||++++..++|..+|+.|++.....  .|.|-|
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~-Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~  290 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSME-PALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK  290 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            4577899999999999999998776776666654 8999999999999999999999999999999987655  344557


Q ss_pred             CCC
Q 034777           82 SID   84 (84)
Q Consensus        82 ~~~   84 (84)
                      |.|
T Consensus       291 ~~~  293 (293)
T PRK10532        291 EVD  293 (293)
T ss_pred             CCC
Confidence            777

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.01  E-value=2.2e-09  Score=72.64  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFF--LFEEQLSFQWFAGALFIVVGVLILSKSSI   77 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~--~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~   77 (84)
                      +.+.+++-++...++..+||+.|..+|... .+.+|+.+++.++.  +|||++|+++++|+.+|++|+++++++++
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~-~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSRAYPL-LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            346678888999999999999775555433 24557888888885  89999999999999999999999997644

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.98  E-value=3.5e-09  Score=70.23  Aligned_cols=71  Identities=14%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      ...++++=++++.+..+|+|.-|-.+|...=.+.|.+.+++.|+++|||++|+.+++|+.+|+.|++.++.
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl  108 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL  108 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            34567777888999999999999889999999999999999999999999999999999999999999863

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.94  E-value=7.5e-09  Score=66.97  Aligned_cols=71  Identities=21%  Similarity=0.335  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccc
Q 034777            8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMK   80 (84)
Q Consensus         8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~   80 (84)
                      .+.....+.+|.-|++..++.++  .-.++++++++++|+++|||++++++|.|+.++.+|+++++.++.+.+
T Consensus        42 ~~~~~~~~~~~~~a~~~~~~~v~--~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~~  112 (113)
T PF13536_consen   42 LLGFGVAYLLFFYALSYAPALVA--AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTGA  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcccC
Confidence            34445779999999999875333  444567999999999999999999999999999999999988765543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.81  E-value=1.1e-08  Score=64.04  Aligned_cols=67  Identities=19%  Similarity=0.429  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777            6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS   73 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~   73 (84)
                      +.++++...+.+|++|+|..+...+++... .+.+++.+++++++||++++++++|+.+++.|++++.
T Consensus        59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   59 LGLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            445568999999999999966544444433 3489999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.79  E-value=1.8e-08  Score=73.95  Aligned_cols=73  Identities=21%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777            6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM   79 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~   79 (84)
                      +.+.++...+.+|.+++|+.++..+++..... .+.+++.|++++||++++..++|..+|+.|+++++.+++.+
T Consensus       218 l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~-Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~~  290 (292)
T PRK11272        218 LAVFGSIIAISAYMYLLRNVRPALATSYAYVN-PVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYLF  290 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45678899999999999998877777776554 99999999999999999999999999999999998765543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=98.75  E-value=2.8e-08  Score=63.33  Aligned_cols=62  Identities=21%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFI   65 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lI   65 (84)
                      ..+.+.+-+....++.+|+|+-|..+|...-.+.+++.+++.|.++|||++|+.+++|+.+|
T Consensus        32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            34567788899999999999999888888888999999999999999999999999999986

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.68  E-value=6.6e-08  Score=71.20  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777            6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM   79 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~   79 (84)
                      ....++.+.+.+|.+++|+.++.++++.... +.++++++|++++||++++..++|.++|+.|+++...+.+++
T Consensus       220 ~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l-~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~  292 (295)
T PRK11689        220 LAAAAMGFGYAAWNVGILHGNMTLLATASYF-TPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK  292 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHh-HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence            3346789999999999999776665555544 389999999999999999999999999999998876655444

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.67  E-value=7.7e-08  Score=73.96  Aligned_cols=66  Identities=12%  Similarity=0.200  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            9 LFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         9 ~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .++.+.+.++.+++|..++.++++..... .++++++|++++||++++..++|.++|+.|+.+..++
T Consensus       264 i~t~lay~lw~~~v~~~ga~~as~~~~L~-PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        264 IITSVYYVIHSWTVRHKGPLYLAIFKPLS-ILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHhHH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            45678899999999986655555554443 8999999999999999999999999999999998865

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.66  E-value=1.6e-07  Score=68.46  Aligned_cols=70  Identities=17%  Similarity=0.128  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .+....+...+.++++|+|..++..+++.+... .++++++|+++|||++++++|+|+.+++.|++++..+
T Consensus        67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            445667889999999999998766666555543 8999999999999999999999999999999988754

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.62  E-value=9.1e-08  Score=70.48  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            7 VILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         7 ~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ...++...+.+|++|+|..++..+.+..... .+++.+.|++++||++++..+.|.++|+.|+.++..+
T Consensus       219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~-Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIG-PTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4557889999999999997765555555543 8999999999999999999999999998887765544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.62  E-value=2.3e-07  Score=67.65  Aligned_cols=66  Identities=17%  Similarity=0.267  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCc-eeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777            5 GLVILFNVAMWGCYINSLRVLSS-LQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL   72 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s-~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll   72 (84)
                      .+..+++...+.+|++++|..+. ..++...+.  .+++.++|++++||+++++.++|..+|+.|++++
T Consensus       215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~--pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTS--IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCceEEEeecccH--HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            34567788999999999999664 555555444  7999999999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.53  E-value=2.6e-07  Score=65.40  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGV   69 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv   69 (84)
                      +.+..+++...+.+|++|+|+.++..+++..... .+.+++++++++||++++.++.|..+++.|+
T Consensus       195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~-pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       195 LYLGLIGTALAYFLWNKGLTLVDPSAASILALAE-PLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            3456677899999999999997766666655543 8999999999999999999999999999996

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.52  E-value=5.3e-07  Score=63.84  Aligned_cols=71  Identities=15%  Similarity=0.046  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS   76 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~   76 (84)
                      .+...+..+.+.+|+.|++..++..+++.. +...+++++++++++||+++++++.|+.+.+.|++++..++
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~-~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~  121 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLL-YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG  121 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHH-hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence            344566789999999999997766665553 33489999999999999999999999999999999987654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.52  E-value=4.2e-07  Score=66.93  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .+.++++...+.+|.+++|+.+...++.... +..++++++|++++||++++..++|..+|+.|+.+...+
T Consensus       219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSL-LVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            3457889999999999999866545554443 458999999999999999999999999999999987554

>TIGR00688 rarD rarD protein

Probab=98.47  E-value=6.6e-07  Score=64.14  Aligned_cols=69  Identities=22%  Similarity=0.176  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      .+..++-...|.+|+.|+|..+...|++.-. .+.+++++++++++|||++.++|+|+.+-+.|++++..
T Consensus        74 ~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        74 LLCGLLIGFNWWLFIWAVNNGSSLEVSLGYL-INPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            4455567788999999999988777777755 46999999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.47  E-value=2e-07  Score=68.33  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=55.0

Q ss_pred             HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcccc
Q 034777           16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKD   81 (84)
Q Consensus        16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~   81 (84)
                      ..++.++|+.++.++++... ...++++++|+++|||++++..++|..+++.|+.+.++..++|+|
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~-l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~  300 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNC-MKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK  300 (302)
T ss_pred             HHHHHHHccCCchHHHHHhh-hhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence            35668899988777777744 458999999999999999999999999999999999887666654

specificities overlap.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.40  E-value=1.3e-06  Score=64.39  Aligned_cols=68  Identities=18%  Similarity=0.270  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777            6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      +...+.+..|.+|+.|++..++..+++.... +.+.+++++++++||+++.++|+|+.+-++|++++..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~-~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFI-NPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            3455667789999999999988888888765 4999999999999999999999999999999998753

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.38  E-value=1.3e-06  Score=58.41  Aligned_cols=67  Identities=27%  Similarity=0.371  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777            4 YGLVILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI   71 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l   71 (84)
                      +..-++.|..+-..|+-.|++.| |...|+.| |++|++|++.|+++.+|..+++.++|+.+|+.|+.+
T Consensus        44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~N-sl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIAN-SLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeeehHHh-HHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            44557889999999999999977 66666665 455999999999999999999999999999999875

Many members are annotated as potential transmembrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.30  E-value=4.6e-06  Score=58.60  Aligned_cols=69  Identities=25%  Similarity=0.307  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ..++...+++.+|+++++..+...++... ....+.+.+.++++++|++++..++|..+|+.|+++.+.+
T Consensus       220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         220 LGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            34455558999999999997665555544 3347788888999999999999999999999999998876

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.16  E-value=7.5e-06  Score=60.04  Aligned_cols=70  Identities=16%  Similarity=0.043  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      +....++++....+...+++..+...+++.+.. +.++++++++++++|+++.++++|+.+.+.|+.+...
T Consensus        68 ~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~-~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~  137 (302)
T TIGR00817        68 LLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAM-EPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc-chHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence            345666778888899999999887777777744 4899999999999999999999999999999987653

specificities overlap.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.13  E-value=7.2e-06  Score=60.83  Aligned_cols=69  Identities=22%  Similarity=0.327  Sum_probs=61.1

Q ss_pred             HHHHHHHHH----HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHccC
Q 034777            7 VILFNVAMW----GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQW----FAGALFIVVGVLILSKS   75 (84)
Q Consensus         7 ~~~~n~~mw----~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~----~~G~~lIi~Gv~ll~~~   75 (84)
                      .......+|    .+|+.|.|......+.......+++.+++.|.++|||+.+.++    ++|+.+++.|+++++..
T Consensus        61 ~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        61 VGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            345556669    9999999998878888888888899999999999999999999    99999999999998765

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.08  E-value=1.9e-05  Score=58.16  Aligned_cols=64  Identities=19%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhccc-CceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777           11 NVAMWGCYINSLRVL-SSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        11 n~~mw~~y~kaL~~~-~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ....+.+|+.+++.+ ++..+.+. ...+.+.+.+++++++||+++.++++|+.+.++|+.++...
T Consensus        69 ~~~~~~~~~~~~~~~~~a~~a~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         69 SFGQFAFLFCAINFGMPAGLASLV-LQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHH-HHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            345666788898874 66666655 44668999999999999999999999999999999988754

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.05  E-value=1.9e-05  Score=55.43  Aligned_cols=75  Identities=21%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGF-FLFEEQLSFQWFAGALFIVVGVLILSKSSIEM   79 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~-~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~   79 (84)
                      ...........+.+|+.+++..+...+++..... .+.++++++ ++++|++++++|.|+.+...|++++.+.+...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          73 LLLALLGLALPFLLLFLALKYTSASVASLIIGLL-PLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            3445677888899999999987766666665544 789999997 66699999999999999999999998875543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.03  E-value=1.5e-05  Score=59.20  Aligned_cols=67  Identities=16%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHhc-ccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHcc
Q 034777            7 VILFNVAMWGCYINSLR-VLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWF----AGALFIVVGVLILSK   74 (84)
Q Consensus         7 ~~~~n~~mw~~y~kaL~-~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~----~G~~lIi~Gv~ll~~   74 (84)
                      .++++.....+|+.+++ ..++..+++.+... .+.+++.++++|||+.+++.+    +|..+|+.|+++++.
T Consensus       217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~-pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLG-VIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHcccccchhhHHHHHHHH-HHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            55557888899999999 77888888888776 999999999999999999999    999999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.88  E-value=4.8e-05  Score=57.87  Aligned_cols=68  Identities=18%  Similarity=0.284  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHH----HhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            7 VILFNVAMWGCYIN----SLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         7 ~~~~n~~mw~~y~k----aL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .++++++.+.+|..    ++++.+...+++.+.. -.+++.++|+++|||++++.+++|.++++.|+++-+..
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~l-k~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTL-KRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH-HHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            35567777777775    8888888888888874 48899999999999999999999999999999987653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.88  E-value=4.8e-05  Score=57.88  Aligned_cols=67  Identities=15%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777            7 VILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         7 ~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      ..+|+.........|++..+...+++.+. .+.++++++++++++|+++.+.++|+.+++.|+.+.+.
T Consensus       120 ~gl~~~~~~~~~~~sl~~~svs~~~iika-~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        120 QGLCHLFVHFGAVISMGLGAVSFTHVVKA-AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHH-hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            34444433444558888887777777777 56999999999999999999999999999999999874

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.78  E-value=8.4e-05  Score=57.26  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHcc
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFL------FEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~------f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      +++..+++.....+|+.++|..++..|++.+.. +.++++++++++      ++|++++.+++|+.+=++|+.++..
T Consensus        81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~-~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNI-TPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh-hHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            344555555566678999999888888877544 499999999999      7999999999999999999998654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.56  E-value=0.00049  Score=50.68  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhccc----CceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777           10 FNVAMWGCYINSLRVL----SSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        10 ~n~~mw~~y~kaL~~~----~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .....+.+++.+++..    ++..+.+.+ +.+.+++.+++++++||++++++|+|+.+-.+|++++...
T Consensus        70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~-~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         70 LFVSYEICLALSLGYANTRRQAIEVGMVN-YLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHH-HHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            3445566677788653    233333332 3458999999999999999999999999999999988654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.55  E-value=0.00044  Score=51.21  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM   79 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~   79 (84)
                      .+..+++..+-.+.+.-.++.+++..++..+. .-.++.+++..+|++++++..|.|+.++..|..+=+...++|
T Consensus       229 ~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~-Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  229 LLFSLTGALGQFFIFYLIKKFSALTTTIVTTL-RKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhhhhHHHH-HHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            34556666666666666777665554444433 268899999999999999999999999999999877654443

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.46  E-value=0.0008  Score=51.94  Aligned_cols=67  Identities=15%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH---HHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777            9 LFNVAMWGCY---INSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS   76 (84)
Q Consensus         9 ~~n~~mw~~y---~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~   76 (84)
                      .....+..+|   --.++.+++...++ ++......+.+++.++|||+.++..++|.++|+.|+++.+..+
T Consensus       238 ~~~~~lf~~y~l~p~~l~~ssAt~~nL-sLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  238 GYALCLFLFYSLVPIVLRMSSATFFNL-SLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhCccceeeh-HHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            3344445555   33456666555554 4455567889999999999999999999999999999987653

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.38  E-value=0.00068  Score=50.17  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS   76 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~   76 (84)
                      +....+++..+-.+-..||+.-|-..-++.+.+ ..+.+.++|++++|++.+.++++++.++.+|+++....+
T Consensus        67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~-~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~  138 (303)
T PF08449_consen   67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSS-KPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD  138 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhh-HHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence            344556777777777889988554333344433 379999999999999999999999999999999876553

; GO: 0055085 transmembrane transport

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.36  E-value=0.0011  Score=48.65  Aligned_cols=61  Identities=16%  Similarity=0.013  Sum_probs=46.6

Q ss_pred             HHHHHHHHHh-cccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777           13 AMWGCYINSL-RVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        13 ~mw~~y~kaL-~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ....+|+-+. +..++..+++... .+.+++++++++ +||+++.++|+|+.+-++|+.++..+
T Consensus        81 ~~~~~~~~~~~~~~~a~~a~~l~~-~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         81 VGNGMVTVAEHQNVPSGIAAVVVA-TVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHH-HHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            3344555566 5566655655544 468999999975 79999999999999999999998754

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.34  E-value=0.00039  Score=51.06  Aligned_cols=60  Identities=22%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             HHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777           18 YINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE   78 (84)
Q Consensus        18 y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~   78 (84)
                      .+-+++.-|+.+-.+.+-+ -++.|++++++++|++++.++|.++.+++.|+.+.+.++..
T Consensus        34 ~~~al~~ld~~t~qvl~q~-kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   34 QFVALSYLDPSTFQVLSQS-KILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHhCCHHHHHHHHhh-HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            3456777554444455443 47999999999999999999999999999999998777444

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.34  E-value=0.0011  Score=43.60  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=43.4

Q ss_pred             HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777           16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI   71 (84)
Q Consensus        16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l   71 (84)
                      ..-+..++..+++..+|.+.. .-+.+.++|+++|+|++|++.+.|+.+.+.|+++
T Consensus        96 ~~~f~~i~~tS~lt~~v~~~~-K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   96 LSSFLLIKLTSPLTYSVLGNV-KRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHhhhcChhHHHHHHHH-HHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            334455666666666666554 3678899999999999999999999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.31  E-value=0.00088  Score=51.71  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777            5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS   76 (84)
Q Consensus         5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~   76 (84)
                      .++.++-...=.+..+|++..+-..+++.+... +..+.++++++++||.++.+++|+.+.+.|+.++...+
T Consensus        83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~-i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTS-IPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhh-hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            344445555556677888887766666666443 79999999999999999999999999999999876553

Some of the sequences in this family are annotated as putative membrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.16  E-value=0.0037  Score=47.30  Aligned_cols=72  Identities=25%  Similarity=0.360  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHhcccCc-eeeeehhhhHHHHHHHHHHHHHhccc--ccH----HHHHHHHHHHHHHHHHccCCCc
Q 034777            6 LVILFNVAMWGCYINSLRVLSS-LQATVTNFATNFLSSGLAGFFLFEEQ--LSF----QWFAGALFIVVGVLILSKSSIE   78 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s-~~ati~~~s~n~v~t~l~g~~~f~E~--l~~----~~~~G~~lIi~Gv~ll~~~~~~   78 (84)
                      .+..|...--.+..||||..|+ .+.|+..... ...+.+.|..+|+|-  .++    .-.+|...++.|+++++.+.++
T Consensus       218 ~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~-t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~  296 (300)
T PF05653_consen  218 VLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFF-TLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDK  296 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHhccceEEEeehhHHH-HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCch
Confidence            3444555555566679999665 5555554444 567788888999984  444    3467899999999999876443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.16  E-value=0.003  Score=47.76  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHccCCCcccc
Q 034777           14 MWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQW----FAGALFIVVGVLILSKSSIEMKD   81 (84)
Q Consensus        14 mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~----~~G~~lIi~Gv~ll~~~~~~~~~   81 (84)
                      .=..-++|.|.-...++.-++++...+.+++.|.++|||--+...    .+++++|++|+++-+.+++++++
T Consensus        58 Gq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   58 GQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            334567888886666777788999999999999999999555433    34678999999998887665543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.10  E-value=0.00057  Score=51.66  Aligned_cols=58  Identities=17%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             HHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777           16 GCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        16 ~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ..-+-|+...| +.++|.-..+  .+.+++++.+++||+++.+-+.|..+++.|..++...
T Consensus        65 ~~~~~Al~~ap~slv~Plg~~~--lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   65 ILNFVALGFAPASLVAPLGALS--LVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhh--hhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            34445666665 5777776655  6999999999999999999999999999999976544

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.88  E-value=0.00073  Score=52.15  Aligned_cols=64  Identities=20%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            9 LFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         9 ~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      -++++|-.||  |++..+-.-|+++.++. .+++.+++|.+++|+.|+...+|...-+.||+++.|.
T Consensus       107 G~tgvmlmyy--a~~~mslaDA~vItFss-Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  107 GFTGVMLMYY--ALMYMSLADAVVITFSS-PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             hhhHHHHHHH--HHhhcchhheEEEEecC-hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            3456665555  45665555667777765 8999999999999999999999999999999999876

>TIGR00803 nst UDP-galactose transporter

Probab=96.41  E-value=0.0011  Score=46.79  Aligned_cols=61  Identities=26%  Similarity=0.378  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777            8 ILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVL   70 (84)
Q Consensus         8 ~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~   70 (84)
                      +++|+..-.+..-.+|..+ .....+.  +.+.++++++++++|||++++..|.|+.++..|+.
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~--~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVT--ALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            3444444444444444433 3333333  44579999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.38  E-value=0.014  Score=44.54  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccCc-eeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777            3 RYGLVILFNVAMWGCYINSLRVLSS-LQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVL   70 (84)
Q Consensus         3 ~~~l~~~~n~~mw~~y~kaL~~~~s-~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~   70 (84)
                      .+++.++..++.|.+=--||+.-|. .-++..  |+-..+.++.|+.++||.+|+.+|+|+.+|+.+..
T Consensus       212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~Ll--SLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLL--SLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHHhcccchHHHHHHHhhCChhHHHHHH--HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            4556677888889888889988653 444443  44589999999999999999999999999999887

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.45  E-value=0.058  Score=41.46  Aligned_cols=65  Identities=26%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777            8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS   73 (84)
Q Consensus         8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~   73 (84)
                      .+.=...|..|.=|...+....|+.-=. +|..++.++|.++|||++++.+|+-+.+-.+||....
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~-InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~  143 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYF-INPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT  143 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            3344556888888888776555543332 4678899999999999999999999999999998643

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=95.39  E-value=0.045  Score=37.09  Aligned_cols=63  Identities=27%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHH
Q 034777            8 ILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQL-SFQWFAGALFIVVGVLIL   72 (84)
Q Consensus         8 ~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l-~~~~~~G~~lIi~Gv~ll   72 (84)
                      ++.|...-..|+--|+..+ |+..++.| |+.|++++.+|..+ ||+. --+..+|+.+++.|+.+.
T Consensus        59 FllNqcgSaly~~tLa~a~islavpv~n-sltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   59 FLLNQCGSALYYLTLASAPISLAVPVTN-SLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHHhhHHHHHHHHhcCCceeeeeecc-hhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence            6778888899999998876 66666666 45599999999776 6655 456789999999999874

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.96  E-value=0.0047  Score=47.06  Aligned_cols=70  Identities=21%  Similarity=0.417  Sum_probs=52.9

Q ss_pred             HHHHHHHHHH----HHHHhcccCceeeeehhhhHHHHHHHHHHHHHhccccc-HHHHHH---HHHHHHHHHHHccCCC
Q 034777            8 ILFNVAMWGC----YINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLS-FQWFAG---ALFIVVGVLILSKSSI   77 (84)
Q Consensus         8 ~~~n~~mw~~----y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~-~~~~~G---~~lIi~Gv~ll~~~~~   77 (84)
                      .+....-|.+    =+||++.....+|.-.+++.-.+.+.++|.+.|||=-+ .+..+|   +++|+.|+.+-+.+++
T Consensus        62 ~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          62 GFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             HHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            3444555543    57888887778888889999999999999999999544 445555   5688889988777654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.95  E-value=0.098  Score=40.77  Aligned_cols=63  Identities=14%  Similarity=0.052  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHcc
Q 034777           12 VAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQL-------SFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus        12 ~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l-------~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      +..=..+.+++|.-.-..+.-+++++-.++.++++.++|||=-       -..-.+|++++++|+++.+.
T Consensus        84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3344578899998666667777888889999999999999732       23467899999999999988

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.0095  Score=46.43  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC-CCccc
Q 034777            3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS-SIEMK   80 (84)
Q Consensus         3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~-~~~~~   80 (84)
                      +...|++-++.-+..|.=|   -.+++++.-..|  ++.+++++..+++|++++.-.+|..+.++|-.++-.. +||+|
T Consensus        70 G~ltm~vGei~NFaAYaFA---PasLVtPLGAls--vi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~  143 (335)
T KOG2922|consen   70 GMLTMIVGEIANFAAYAFA---PASLVTPLGALS--VIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE  143 (335)
T ss_pred             HHHHHHHHhHhhHHHHhhc---hHhhhccchhHH--HHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence            4556777777777777632   235677777777  5999999999999999999999999999999976554 44443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.87  E-value=0.012  Score=44.13  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccccCC
Q 034777           16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSI   83 (84)
Q Consensus        16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~~~   83 (84)
                      ..|.+||++-+...++-. +..|-.++-++++.++|++....+.+...+-+.|+++++..++|.+.|+
T Consensus        68 Y~Yl~AL~~is~s~asai-~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~  134 (290)
T KOG4314|consen   68 YLYLLALKKISASDASAI-FACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEI  134 (290)
T ss_pred             cHHHHHHHhcChhhhHHH-HHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhh
Confidence            368999998654444443 3567788889999999999999999999999999999998888876653

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.55  E-value=0.3  Score=37.55  Aligned_cols=65  Identities=12%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777            6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI   71 (84)
Q Consensus         6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l   71 (84)
                      +..+|.++.=.|-++-..+-+.+.++|..+-= =.++.+++.++|+.++++++|+|..++..|+..
T Consensus       246 l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTR-KfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  246 LLAIASCLGQWFIFKTVEEFGPLTCSIVTTTR-KFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCeeEEEEeehH-HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            34455555555555555553334444443322 367899999999999999999999999999886

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.55  E-value=0.13  Score=39.50  Aligned_cols=72  Identities=13%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .+.+.+..|++...+|..|-|.-|-.+--+..- ....+..+.|.++|||+++.-++..-++|-.|+++.+.+
T Consensus       213 LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqY-i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         213 LLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQY-IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            356778999999999999998865221111221 225667889999999999999999999999999987766

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=93.74  E-value=0.48  Score=37.23  Aligned_cols=55  Identities=16%  Similarity=0.286  Sum_probs=45.3

Q ss_pred             HHHHHhcccCceeeeeh-hhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777           17 CYINSLRVLSSLQATVT-NFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS   73 (84)
Q Consensus        17 ~y~kaL~~~~s~~ati~-~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~   73 (84)
                      .++-++...|+.+-.|+ ++-  +..|+++..++++++++.++|.-..+...|+.+.+
T Consensus       108 l~yval~~ldaatyqVt~qlK--I~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  108 LQYVALSNLDAATYQVTYQLK--ILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHhcCCchhhhhhhhHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            56667777665444444 334  58899999999999999999999999999999998

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=93.05  E-value=0.15  Score=39.91  Aligned_cols=37  Identities=19%  Similarity=0.441  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777           39 FLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        39 ~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      ++++.+++.-+++.++++.+|+|+..+++|++.+...
T Consensus       123 iIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen  123 IIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             hhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            6899999999999999999999999999999976543

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=92.22  E-value=0.49  Score=36.85  Aligned_cols=68  Identities=25%  Similarity=0.306  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhcc----cCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777            7 VILFNVAMWGCYINSLRV----LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus         7 ~~~~n~~mw~~y~kaL~~----~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .+.+|++-=.+=.|+.-.    .+|+..|++-+-= =.++.+++...|+.+.+++.|+|..++..|.++-+..
T Consensus       244 yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlR-KFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  244 YLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLR-KFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             HHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHH-HHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            356666665555565532    3455555543322 2467889999999999999999999999999986544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=91.96  E-value=0.1  Score=41.76  Aligned_cols=59  Identities=12%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777           16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .+|-.||+..+..--||.+... -.++.++|..+-+|++|+.+.++.++=+.|+++++..
T Consensus       174 l~~naALa~TsVAS~TilSStS-s~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  174 LTSNAALAFTSVASTTILSSTS-SFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             HHHHHHhhhhhhhhhhhhhhcc-hHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence            3577788876655555665443 3677888888889999999999999999999998876

>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein

Probab=91.75  E-value=2.4  Score=29.60  Aligned_cols=72  Identities=13%  Similarity=0.224  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccccCC
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSI   83 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~~~   83 (84)
                      +++..+++.....++.+        .-.+.+++++.+.-+..+++.+--.+++.+..|+.++..=+.+.=...++||.|.
T Consensus        54 ~~ll~~~T~G~~~~lm~--------~kgi~rm~lG~~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS~  125 (144)
T PF01350_consen   54 VVLLGVMTLGVFWFLMR--------RKGIGRMSLGMLVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQRSQ  125 (144)
T ss_pred             HHHHHHHHHHHHHhhhc--------CCCcchhhHHHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcCCc
Confidence            34455555554444432        2347789999999999999999999999999999999887776666677777654

This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.03  E-value=0.62  Score=36.51  Aligned_cols=72  Identities=17%  Similarity=0.162  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccc-CceeeeehhhhHHHHHHHHHHHHHhcc--cccHH----HHHHHHHHHHHHHHHccC
Q 034777            3 RYGLVILFNVAMWGCYINSLRVL-SSLQATVTNFATNFLSSGLAGFFLFEE--QLSFQ----WFAGALFIVVGVLILSKS   75 (84)
Q Consensus         3 ~~~l~~~~n~~mw~~y~kaL~~~-~s~~ati~~~s~n~v~t~l~g~~~f~E--~l~~~----~~~G~~lIi~Gv~ll~~~   75 (84)
                      ++..+..|...-..+--|||+.. .+.+.|+--.-. .-++.+.|...|+|  ..+..    -.+|...++.|++++++.
T Consensus       229 ~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~f-Ttl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~  307 (335)
T KOG2922|consen  229 FLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMF-TTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT  307 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence            34455666666667778999995 456666654433 56777888899998  44443    467889999999999765

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=89.76  E-value=1.2  Score=32.74  Aligned_cols=60  Identities=17%  Similarity=0.075  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777            8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus         8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      ..+......+++.|+|..++..+++.... +.+.+++++    +|+.  .++.++.+.++|+.++..
T Consensus        78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t-~Pi~~~ll~----~~~~--~~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         78 GVSLGGMNYLFYLSIQTVPLGIAVALEFT-GPLAVALFS----SRRP--VDFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHHHHh----cCCh--HHHHHHHHHHHHHheeee
Confidence            34566677788899999887777766643 467776665    2543  456777888999988754

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=89.46  E-value=0.48  Score=31.71  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777           40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL   72 (84)
Q Consensus        40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll   72 (84)
                      .+-+.++.+.+||++++....|..+++.++..+
T Consensus        74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             heeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            344677889999999999999999999988754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=89.11  E-value=0.38  Score=36.44  Aligned_cols=53  Identities=23%  Similarity=0.431  Sum_probs=36.5

Q ss_pred             HHHHHhcc-cCceeeeehhhhHHHHHHHHHHHHHhcccccHH----HHHHHHHHHHHHHH
Q 034777           17 CYINSLRV-LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQ----WFAGALFIVVGVLI   71 (84)
Q Consensus        17 ~y~kaL~~-~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~----~~~G~~lIi~Gv~l   71 (84)
                      +|+-|.+. +.+.--+..-++  .+.+++-|.++|||+=+.+    .++|..+|+.|.++
T Consensus       211 ~~~is~~~~G~a~af~lSQ~~--vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  211 FYLISAQKNGVATAFTLSQLG--VVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHhHHhccchhhhhHHhHH--HHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            45555555 323333333334  7999999999999987765    56788999888765

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=88.24  E-value=3  Score=32.63  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             HHHHHHhcccCceeeee---hhhhHHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHccC
Q 034777           16 GCYINSLRVLSSLQATV---TNFATNFLSSGLAGFFLFEEQLS------FQWFAGALFIVVGVLILSKS   75 (84)
Q Consensus        16 ~~y~kaL~~~~s~~ati---~~~s~n~v~t~l~g~~~f~E~l~------~~~~~G~~lIi~Gv~ll~~~   75 (84)
                      .+|.-+-+......+.+   ...+.+.+++++-|. ++||.=+      ..-++|.++++.|.+++...
T Consensus       275 ~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        275 FFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            34555444433333334   666777888999897 5999877      56699999999999998765

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.32  E-value=3.6  Score=32.05  Aligned_cols=53  Identities=26%  Similarity=0.329  Sum_probs=46.9

Q ss_pred             cccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777           23 RVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS   76 (84)
Q Consensus        23 ~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~   76 (84)
                      |..|++.-|+.- ..|-..+.+.+.++++++.++...+|+.+=+.|-++=+...
T Consensus       250 ~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  250 RVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             hhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence            567888888888 99999999999999999999999999999888888776664

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=84.81  E-value=4.8  Score=31.60  Aligned_cols=45  Identities=27%  Similarity=0.387  Sum_probs=38.5

Q ss_pred             cCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777           25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI   71 (84)
Q Consensus        25 ~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l   71 (84)
                      +....|||+..-  =.+|.++++++|..++|.|..-|..+++.|+.+
T Consensus       285 GA~~aatvTTaR--KavTi~lSfllFsKPfT~qy~~~gllv~lgI~L  329 (367)
T KOG1582|consen  285 GALIAATVTTAR--KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYL  329 (367)
T ss_pred             chhHHHHHHHhH--hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHh
Confidence            344667777666  378899999999999999999999999999986

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=84.02  E-value=0.51  Score=36.44  Aligned_cols=40  Identities=18%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcccc
Q 034777           42 SGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKD   81 (84)
Q Consensus        42 t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~   81 (84)
                      ....|+++|+|++|+...+|+++=+.|+++=++....+++
T Consensus       275 vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  275 VIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             EEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3456889999999999999999999999998887555443

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.89  E-value=2.5  Score=28.31  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777           40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK   74 (84)
Q Consensus        40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~   74 (84)
                      ..=+.++.+.++|++.+..+.|..+|..|+.++=+
T Consensus        81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            33467889999999999999999999999987643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=81.48  E-value=5.6  Score=31.33  Aligned_cols=43  Identities=21%  Similarity=0.433  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777           35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI   77 (84)
Q Consensus        35 ~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~   77 (84)
                      .++.++++++.++.+|+-++|..-.+|+.+++..+.+=+..++
T Consensus       283 ~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~  325 (345)
T KOG2234|consen  283 TSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA  325 (345)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence            3556799999999999999999999999999999999885544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.37
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.34

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.37  E-value=2.9e-12  Score=82.83  Aligned_cols=74  Identities=19%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI   77 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~   77 (84)
                      ..+.+++..+.+.++.+|+|..|..+|...-.+.+++++++.|+++|||++|+++++|+.+|+.|+++++..++
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~  106 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45677889999999999999998877777766788999999999999999999999999999999999988653

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.34  E-value=1.6e-12  Score=87.66  Aligned_cols=73  Identities=19%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777            4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS   76 (84)
Q Consensus         4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~   76 (84)
                      ..+.+++.++.+.++.+|+|..|..+|...-.++++++++++|+++|||++|+++++|+++|++|++++++.+
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3577889999999999999998877777765577899999999999999999999999999999999997753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00