Citrus Sinensis ID: 034797

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVSSQVNKAKQSEESLRTVMYLSCWGPN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcEEEEEEccccc
Coil and Loop (DISEMBL)
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVSSQVNKAKQSEESLRTVMYLSCWGPN
Flexible Loop (DISEMBL)
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSssssavvssqvnkakqseeslrtvmylscwgpn
Low Complexity Region (SEG)
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLssvsrstrklsssssavvssqvNKAKQSEESLRTVMYLSCWGPN
Disordered region (IsUnstruct)
******AWIVGAVEALKDQGFCRWNYTLKSLH****************************************TVMYLSCW***
Disordered Region (DISOPRED)
****SRA*IVGAVEALKDQGFCRWNYTLKSL******************************************VMYLSCWGPN
Disordered Region (DISEMBL)
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQH***********************************SLRTVMYLSCWGPN
Disordered Region (DISPRO)
*****RAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVS*************************ESLRTVMYLSCWGPN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVSSQVNKAKQSEESLRTVMYLSCWGPN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
225447663	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.764	6e-24
118489034	88	unknown [Populus trichocarpa x Populus d	0.975	0.920	0.704	8e-24
449493094	85	PREDICTED: uncharacterized protein LOC10	0.975	0.952	0.678	9e-24
224145559	88	predicted protein [Populus trichocarpa]	0.987	0.931	0.707	1e-23
225447659	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.752	1e-23
225447661	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.752	1e-23
225447667	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.741	3e-23
225447657	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.730	3e-23
225447649	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.741	4e-23
225447651	88	PREDICTED: uncharacterized protein LOC10	0.987	0.931	0.730	8e-23

>gi|225447663|ref|XP_002275464.1| PREDICTED: uncharacterized protein LOC100252779 [Vitis vinifera]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 76/89 (85%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AWIV    GAVEALKDQGFCRWNYTL+S+HQHAKNNL S S++ +KLSSSSSA+
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS+V   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRVRDEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489034|gb|ABK96324.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 75/88 (85%), Gaps = 7/88 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MSS S+AW+V    G VEALKDQGFCRWNYTL+SLHQHAKN++ S S++ +KLSSSSSA+
Sbjct: 1  MSSASKAWLVAAAVGGVEALKDQGFCRWNYTLRSLHQHAKNHVGSASQA-KKLSSSSSAM 59

Query: 57 VSSQVN--KAKQSEESLRTVMYLSCWGP 82
          +S++V   +AKQSEESLR VMYLSCWGP
Sbjct: 60 ISNKVKDVRAKQSEESLRKVMYLSCWGP 87

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493094|ref|XP_004159191.1| PREDICTED: uncharacterized protein LOC101232328 [Cucumis sativus]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 6/87 (6%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MSS+ RAWIV    G VEALKDQG CRWN+T++S HQ+AKN++ SV ++TR L+ SS+AV
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYAKNHVRSVPQATR-LTGSSAAV 59

Query: 57 VSSQVNKAKQSEESLRTVMYLSCWGPN 83
          VSS+  + KQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSK-QQQKQSEESLRTVMYLSCWGPN 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145559|ref|XP_002325686.1| predicted protein [Populus trichocarpa] gi|222862561|gb|EEF00068.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MSS S+AW+V    G VEALKDQGFCRWNYTL+SLH HAKN++ S S++ +KLSSSSSA+
Sbjct: 1  MSSASKAWLVAAAIGGVEALKDQGFCRWNYTLRSLHHHAKNHVRSASQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          +S+ V   KAKQSEESLR VMYLSCWGPN
Sbjct: 60 ISNIVKEEKAKQSEESLRKVMYLSCWGPN 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447659|ref|XP_002275321.1| PREDICTED: uncharacterized protein LOC100263064 [Vitis vinifera]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 76/89 (85%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AW+V    GAVEALKDQGFCRWNYTL+S+HQHAKNNL S S++ RKLSSSSSA+
Sbjct: 1  MSHMRKAWVVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQA-RKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS++   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRMRDEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447661|ref|XP_002275421.1| PREDICTED: uncharacterized protein LOC100257932 [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 76/89 (85%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AWIV    GAVEALKDQGFCRWNYT++S+HQHAKNNL S S++ +KLSSSSSA+
Sbjct: 1  MSHMRKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHAKNNLRSFSQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS+V   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRVRDEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447667|ref|XP_002275551.1| PREDICTED: uncharacterized protein LOC100242538 [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 75/89 (84%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AW+V    GAVEALKDQGFCRWNYT++S+HQHAK NL S SR+ +KLSSSSSA+
Sbjct: 1  MSHMGKAWMVAASVGAVEALKDQGFCRWNYTMRSIHQHAKTNLRSFSRA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS+V   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRVRDEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447657|ref|XP_002275343.1| PREDICTED: uncharacterized protein LOC100240803 [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 75/89 (84%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AWIV    GAVEALKDQGFCRWNYT++SLHQHAKNNL S S++ +KLSSSSSA+
Sbjct: 1  MSHMGKAWIVATSMGAVEALKDQGFCRWNYTMRSLHQHAKNNLRSFSQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
           SS+V  +KAK+SEESLR VMYLSCWGPN
Sbjct: 60 ASSRVREDKAKKSEESLRAVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447649|ref|XP_002274919.1| PREDICTED: uncharacterized protein LOC100261290 [Vitis vinifera]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 75/89 (84%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AWIV    GAVEALKDQGFCRWNYTL+S+HQHAK NL S +++ +KLSSSSSA+
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFTQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS+V   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRVRDEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447651|ref|XP_002274988.1| PREDICTED: uncharacterized protein LOC100256196 [Vitis vinifera]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 75/89 (84%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AW+V    GAVEALKDQGFCRWNYTL+S+HQHAK NL S +++ +KLSSSSSA+
Sbjct: 1  MSHVGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS+V   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRVREEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2122799	90	AT4G10270 "AT4G10270" [Arabido	1.0	0.922	0.533	3.1e-19
TAIR|locus:1005716386	83	AT4G10265 "AT4G10265" [Arabido	0.939	0.939	0.511	3.2e-17
TAIR|locus:2134188	95	AT4G33560 "AT4G33560" [Arabido	0.975	0.852	0.309	9e-06

TAIR|locus:2122799 AT4G10270 "AT4G10270" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/90 (53%), Positives = 56/90 (62%)

Query:     1 MSSTSRAWIV----GAVEALKDQ-GFCRWNYTLKSLHQHAKNNLXXXXXXXXXXXXXXXX 55
             MSSTS+AW V    GAVEALKDQ G CRWNY L+S++QH +NN+                
Sbjct:     1 MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query:    56 XXXXX--XNKAKQSEESLRTVMYLSCWGPN 83
                      KAK++EESLRTVMYLSCWGPN
Sbjct:    61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:1005716386 AT4G10265 "AT4G10265" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 45/88 (51%), Positives = 54/88 (61%)

Query:     1 MSSTSRAWIV----GAVEALKDQ-GFCRWNYTLKSLHQHAKNNLXXXXXXXXXXXXXXXX 55
             MSS S+ W+V    GAVEALKDQ G CRWNY ++S +Q+ +NNL                
Sbjct:     1 MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query:    56 XXXXXXNKAKQSEESLRTVMYLSCWGPN 83
                   NK KQ+EESLRTVMYLSCWGP+
Sbjct:    61 T-----NKTKQAEESLRTVMYLSCWGPS 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2134188 AT4G33560 "AT4G33560" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/84 (30%), Positives = 35/84 (41%)

Query:     2 SSTSRAWIVGAVEALKDQGFCRWNYTLKSLHQHAKNNLXXXXXXXXXXXXXXXXXXXXXX 61
             +S + A  + AVE LKDQG  RWNY  + LH+ A   +                      
Sbjct:     7 ASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIR 66

Query:    62 NKAKQS---EESLRTVMYLSCWGP 82
             +K   +   E S    M LSC+GP
Sbjct:    67 SKPLSTTPFETSFEKAMGLSCFGP 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.125   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        61   0.00091  102 3  11 22  0.39    28
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  102 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.05u 0.14s 5.19t   Elapsed:  00:00:00
  Total cpu time:  5.05u 0.14s 5.19t   Elapsed:  00:00:00
  Start:  Fri May 10 01:22:05 2013   End:  Fri May 10 01:22:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
PLN00165	88	PLN00165, PLN00165, hypothetical protein; Provisio	3e-32
pfam12609	78	pfam12609, DUF3774, Wound-induced protein	2e-28

>gnl|CDD|165732 PLN00165, PLN00165, hypothetical protein; Provisional

 Score =  106 bits (266), Expect = 3e-32
 Identities = 68/89 (76%), Positives = 76/89 (85%), Gaps = 7/89 (7%)

Query: 1  MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAV 56
          MS   +AWIV    GAVEALKDQGFCRWNYTL+S+HQHAKNNL S S++ +KLSSSSSA+
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQA-KKLSSSSSAM 59

Query: 57 VSSQV--NKAKQSEESLRTVMYLSCWGPN 83
          VSS+V   KAKQSEESLRTVMYLSCWGPN
Sbjct: 60 VSSRVREEKAKQSEESLRTVMYLSCWGPN 88

Length = 88

>gnl|CDD|221661 pfam12609, DUF3774, Wound-induced protein

 Score = 96.7 bits (241), Expect = 2e-28
 Identities = 49/74 (66%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 10 VGAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVSSQVN-KAKQSE 68
          VGAVEALKDQG CRWNY L+SLHQ AK N    +    K SSSSS+  ++    KAKQ+E
Sbjct: 5  VGAVEALKDQGLCRWNYALRSLHQAAKANARRSASQAGKSSSSSSSASAAAAEVKAKQAE 64

Query: 69 ESLRTVMYLSCWGP 82
          ESLRTVMYLSCWGP
Sbjct: 65 ESLRTVMYLSCWGP 78

This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PLN00165	88	hypothetical protein; Provisional	100.0
PF12609	79	DUF3774: Wound-induced protein; InterPro: IPR02225	100.0

>PLN00165 hypothetical protein; Provisional

Probab=100.00  E-value=2e-49  Score=262.25  Aligned_cols=82  Identities=80%  Similarity=1.235  Sum_probs=73.6

Q ss_pred             CCccchhHHH----HHHHhhcccccccchhhhHHHHHHHhhhcchhhhccccCCCCcchhcc--cccccccchhhhhcce
Q 034797            1 MSSTSRAWIV----GAVEALKDQGFCRWNYTLKSLHQHAKNNLSSVSRSTRKLSSSSSAVVS--SQVNKAKQSEESLRTV   74 (83)
Q Consensus         1 Ms~~~~~w~v----gaVealKDQG~CRWn~alrS~~~~ak~~~~s~sq~~~~ls~sssa~~s--~~~~k~kqaEESLRtV   74 (83)
                      ||+++|+|||    ||||+|||||+|||||+|||||||+++|++|++|+ ++|++++++..+  .+++|.||+||+||||
T Consensus         1 Ms~~~r~w~vAaSvgaVEalkDQG~cRwny~lrS~~~~a~~~~~s~s~~-~~lss~~~~~~s~~~~~~k~kq~EEsLRtV   79 (88)
T PLN00165          1 MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQA-KKLSSSSSAMVSSRVREEKAKQSEESLRTV   79 (88)
T ss_pred             CccchhHHHHHHHHHHHhhccccCeeehhhHHHHHHHHHHhcccccccc-ccCCCcchhhhhhhhccccccchHHhhhee
Confidence            9999999998    99999999999999999999999999999999999 888766543222  2567889999999999


Q ss_pred             eeeecccCC
Q 034797           75 MYLSCWGPN   83 (83)
Q Consensus        75 MyLSCWGPn   83 (83)
                      |||||||||
T Consensus        80 MyLSCWGPN   88 (88)
T PLN00165         80 MYLSCWGPN   88 (88)
T ss_pred             eEecccCCC
Confidence            999999998

>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes

Probab=100.00  E-value=9.6e-40  Score=211.16  Aligned_cols=72  Identities=71%  Similarity=1.151  Sum_probs=62.8

Q ss_pred             HHHHHhhccc-ccccchhhhHHHHHHHhhhc-chhhhccccCCCCcch-hcccccccccchhhhhcceeeeecccC
Q 034797           10 VGAVEALKDQ-GFCRWNYTLKSLHQHAKNNL-SSVSRSTRKLSSSSSA-VVSSQVNKAKQSEESLRTVMYLSCWGP   82 (83)
Q Consensus        10 vgaVealKDQ-G~CRWn~alrS~~~~ak~~~-~s~sq~~~~ls~sssa-~~s~~~~k~kqaEESLRtVMyLSCWGP   82 (83)
                      |||||+|||| |+|||||+|||+|+++++++ ++.+|+ +++++++++ .....+++.||+|||||||||||||||
T Consensus         5 vgavealKDq~g~crwn~alrs~~~~a~~~~~~s~~~~-~~~~ss~~~~~~~~~~~~~k~aEEsLRtVMyLSCWGP   79 (79)
T PF12609_consen    5 VGAVEALKDQAGLCRWNYALRSLHQHAKANVRGSASQA-KRLSSSSSSSSAAAEEEKRKQAEESLRTVMYLSCWGP   79 (79)
T ss_pred             HHHHhccccccccccccHHHHHHHHHhhhccccccccc-cccCcccccccccccccccchhhhhhceeEEEeccCc
Confidence            6999999999 99999999999999999998 888888 777665442 222367899999999999999999999

Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00