Citrus Sinensis ID: 034916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKEPREESQTAKLSSDNSKEHP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEcccccccccc
Coil and Loop (DISEMBL)
mnpqtdkiVRRTTMVATAVASYFLLTadygpepnaldpIKKAILSAESSVKEFifgskkepreesqtaklssdnskehp
Flexible Loop (DISEMBL)
mnpqtdkivrrtTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFifgskkepreesqtaklssdnskehp
Low Complexity Region (SEG)
MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKEPREESQTAKLSSDNSKEHP
Disordered region (IsUnstruct)
*******IVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAIL***********************************
Disordered Region (DISOPRED)
******K*VRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSV*****************************
Disordered Region (DISEMBL)
MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIF************************
Disordered Region (DISPRO)
*NPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFG***********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKEPREESQTAKLSSDNSKEHP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
255541566	61	conserved hypothetical protein [Ricinus	0.772	1.0	0.901	7e-25
224127652	61	predicted protein [Populus trichocarpa]	0.759	0.983	0.883	7e-24
334186244	71	uncharacterized protein [Arabidopsis tha	0.873	0.971	0.774	9e-24
297810127	71	hypothetical protein ARALYDRAFT_327720 [	0.898	1.0	0.723	2e-23
225454192	80	PREDICTED: uncharacterized protein LOC10	0.759	0.75	0.85	1e-21
297745269	64	unnamed protein product [Vitis vinifera]	0.759	0.937	0.85	1e-21
388501504	79	unknown [Medicago truncatula]	0.962	0.962	0.658	5e-21
356568382	74	PREDICTED: uncharacterized protein LOC10	0.936	1.0	0.658	7e-21
356504525	79	PREDICTED: uncharacterized protein LOC10	0.962	0.962	0.645	2e-20
356522628	72	PREDICTED: uncharacterized protein LOC10	0.911	1.0	0.643	4e-19

>gi|255541566|ref|XP_002511847.1| conserved hypothetical protein [Ricinus communis] gi|223549027|gb|EEF50516.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 60/61 (98%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNP+TDKIVRRTTMVATAVASYFLLTADYGP+PNA+DP+KKAILSAE+SVKEFIFGSKK 
Sbjct: 1  MNPKTDKIVRRTTMVATAVASYFLLTADYGPQPNAVDPVKKAILSAENSVKEFIFGSKKG 60

Query: 61 P 61
          P
Sbjct: 61 P 61

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127652|ref|XP_002320127.1| predicted protein [Populus trichocarpa] gi|222860900|gb|EEE98442.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 59/60 (98%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNP+TDKIVRRTTMVATAVASYFLLTADYGP+PNA++PIK+AILSA+SSVKEFIFGS KE
Sbjct: 1  MNPRTDKIVRRTTMVATAVASYFLLTADYGPQPNAVEPIKRAILSAQSSVKEFIFGSGKE 60

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186244|ref|NP_191962.2| uncharacterized protein [Arabidopsis thaliana] gi|49617787|gb|AAT67589.1| hypothetical protein At4G00530 [Arabidopsis thaliana] gi|60547841|gb|AAX23884.1| hypothetical protein At4g00530 [Arabidopsis thaliana] gi|332656495|gb|AEE81895.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 61/71 (85%), Gaps = 2/71 (2%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNPQTDK+VRRTTMVATAVASYFLLT DYGPEPN LDPIK+ IL+A+ SVK+FIFG K E
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

Query: 61 P--REESQTAK 69
          P  +E S TAK
Sbjct: 61 PSGKEPSDTAK 71

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810127|ref|XP_002872947.1| hypothetical protein ARALYDRAFT_327720 [Arabidopsis lyrata subsp. lyrata] gi|297318784|gb|EFH49206.1| hypothetical protein ARALYDRAFT_327720 [Arabidopsis lyrata subsp. lyrata]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 61/76 (80%), Gaps = 5/76 (6%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNPQTDK+VRRTTMVATAVASYFLLT DYGPEPN LDPIK+ ILSA+ SVK+FIFG K  
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILSAQDSVKQFIFGPKGG 60

Query: 61 PREESQTAKLSSDNSK 76
          P  + Q     SDN+K
Sbjct: 61 PSGKEQ-----SDNAK 71

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454192|ref|XP_002272715.1| PREDICTED: uncharacterized protein LOC100267043 [Vitis vinifera]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 55/60 (91%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNP+TDK+VRRTTMVATA ASYFLLTADYG EPNALDPIK AI SAE SVKEFIFGS+K+
Sbjct: 17 MNPRTDKLVRRTTMVATATASYFLLTADYGAEPNALDPIKNAIHSAERSVKEFIFGSEKD 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745269|emb|CBI40349.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 55/60 (91%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNP+TDK+VRRTTMVATA ASYFLLTADYG EPNALDPIK AI SAE SVKEFIFGS+K+
Sbjct: 1  MNPRTDKLVRRTTMVATATASYFLLTADYGAEPNALDPIKNAIHSAERSVKEFIFGSEKD 60

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501504|gb|AFK38818.1| unknown [Medicago truncatula]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 62/79 (78%), Gaps = 3/79 (3%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNP+TDK V+R T+VAT  ASYF LTADYGP+PNALDPIKK +LSA+S+VKEF  GSK E
Sbjct: 4  MNPKTDKFVKRLTIVATITASYFFLTADYGPKPNALDPIKKQLLSAQSTVKEFFLGSKSE 63

Query: 61 PREESQTAKLSSDNSKEHP 79
            EE    K  SD++K+HP
Sbjct: 64 -SEEKHIGK--SDSNKDHP 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568382|ref|XP_003552390.1| PREDICTED: uncharacterized protein LOC100804482 [Glycine max]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%), Gaps = 5/79 (6%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNPQ D++VRR TM+AT  ASYFLLTADY  EP  LDPIKK +LSAES+VKE++FGSKK+
Sbjct: 1  MNPQADRVVRRVTMIATITASYFLLTADY--EPTVLDPIKKGLLSAESTVKEYVFGSKKQ 58

Query: 61 PREESQTAKLSSDNSKEHP 79
            +E+Q  KL  D++KEHP
Sbjct: 59 S-QENQMEKL--DSNKEHP 74

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504525|ref|XP_003521046.1| PREDICTED: uncharacterized protein LOC100306571 [Glycine max] gi|255628915|gb|ACU14802.1| unknown [Glycine max]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 65/79 (82%), Gaps = 3/79 (3%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          M+P+T+K+VRR T V T  ASYFLLTADYGP+PNALDPIKK ILSA+S+VKE+I GSKKE
Sbjct: 4  MSPRTEKLVRRLTFVTTVAASYFLLTADYGPKPNALDPIKKQILSAQSTVKEYIVGSKKE 63

Query: 61 PREESQTAKLSSDNSKEHP 79
            +ES   +L  D++K++P
Sbjct: 64 -SQESHVGRL--DSNKDNP 79

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522628|ref|XP_003529948.1| PREDICTED: uncharacterized protein LOC100787462 [Glycine max]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
          MNP+T  ++RR T V TA ASYFLLTADYG +PNALDPIKK  LSA+S+VKE+I+GSKKE
Sbjct: 1  MNPRTSSVLRRLTFVTTAAASYFLLTADYGSQPNALDPIKKQKLSAQSTVKEYIWGSKKE 60

Query: 61 PREESQTAKLSSD 73
            +E+   KL S+
Sbjct: 61 S-QENHVGKLDSN 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:505006092	62	AT1G01725 "AT1G01725" [Arabido	0.784	1.0	0.725	1.5e-19

TAIR|locus:505006092 AT1G01725 "AT1G01725" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/62 (72%), Positives = 54/62 (87%)

Query:     1 MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60
             MNPQ +K+V+ T++VATAV SYFLLTADYGPEPNALDPI++ ILSA+ SVKEFIF SKK 
Sbjct:     1 MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query:    61 PR 62
              +
Sbjct:    61 DK 62


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.123   0.330    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        79   0.00091  102 3  11 23  0.47    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  423 (45 KB)
  Total size of DFA:  74 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.21u 0.08s 10.29t   Elapsed:  00:00:01
  Total cpu time:  10.21u 0.08s 10.29t   Elapsed:  00:00:01
  Start:  Fri May 10 03:32:44 2013   End:  Fri May 10 03:32:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140286 hypothetical protein (62 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00