Citrus Sinensis ID: 034974

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGFWTFLEGLLLLANAFAILnedrflapRRWTLAElqaggrntlKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Flexible Loop (DISEMBL)
MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Low Complexity Region (SEG)
MGFWTFLEGllllanafailnEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Disordered region (IsUnstruct)
**FWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLV**
Disordered Region (DISOPRED)
MGFWTFLEGLLLLANAFAILNEDRFLAP********************IGLIHACQFMRLPLILLNLVTIIVKLVSG
Disordered Region (DISEMBL)
MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Disordered Region (DISPRO)
*GFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRLPLILLNLVTIIVKLVSG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
O13825	81	Protein transport protein	yes	no	0.987	0.938	0.443	1e-05
Q3B8G7	82	Immediate early response	N/A	no	0.961	0.902	0.376	7e-05

>sp|O13825|YOS1_SCHPO Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yos1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 2  GFWTFLEGLLLLANAFAILNEDRFLAPRRWT-LAELQAGGR-NTLKGQVIGLIHACQ-FM 58
          GF   L   LLL NA AIL+EDRFL    W+  A L  G R +T+K +++ LI A +  M
Sbjct: 3  GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVM 62

Query: 59 RLPLILLNLVTIIVKLVSG 77
            PLI +N + I+  LV G
Sbjct: 63 TFPLIAINTIVIVYNLVLG 81

Required for protein transport between endoplasmic reticulum and Golgi apparatus.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3B8G7|IR3IP_XENLA Immediate early response 3-interacting protein 1 OS=Xenopus laevis GN=ier3ip1 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 4  WTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQA--GGRNTLKGQVIGLIHACQ-FMRL 60
          +T L+  LL  NA A+L+E+RFL+   W +       G    +K Q++ LI + +  MR+
Sbjct: 6  YTLLQAALLCVNAVAVLHEERFLSKIGWGVDHGIGGFGEEPGMKSQLMNLIRSVRTVMRV 65

Query: 61 PLILLNLVTIIVKLVSG 77
          PLI++N VTI++ L+ G
Sbjct: 66 PLIIVNSVTIVLLLLFG 82

May be involved in protein transport between endoplasmic reticulum and Golgi apparatus.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
18404604	78	Yos1-like protein [Arabidopsis thaliana]	1.0	0.987	0.743	1e-25
356496142	94	PREDICTED: immediate early response 3-in	1.0	0.819	0.766	2e-25
356496140	77	PREDICTED: immediate early response 3-in	1.0	1.0	0.766	3e-25
62318566	78	hypothetical protein [Arabidopsis thalia	1.0	0.987	0.730	4e-25
351722241	94	uncharacterized protein LOC100500402 [Gl	1.0	0.819	0.753	5e-25
357469075	192	hypothetical protein MTR_4g019160 [Medic	1.0	0.401	0.766	1e-23
145332833	78	Yos1-like protein [Arabidopsis thaliana]	1.0	0.987	0.705	2e-23
116830163	79	unknown [Arabidopsis thaliana]	1.0	0.974	0.705	2e-23
224109396	77	predicted protein [Populus trichocarpa]	1.0	1.0	0.688	6e-23
224101087	77	predicted protein [Populus trichocarpa]	1.0	1.0	0.675	9e-23

>gi|18404604|ref|NP_565877.1| Yos1-like protein [Arabidopsis thaliana] gi|297827347|ref|XP_002881556.1| hypothetical protein ARALYDRAFT_902987 [Arabidopsis lyrata subsp. lyrata] gi|21536714|gb|AAM61046.1| unknown [Arabidopsis thaliana] gi|62319249|dbj|BAD94470.1| hypothetical protein [Arabidopsis thaliana] gi|88010893|gb|ABD38869.1| At2g37975 [Arabidopsis thaliana] gi|297327395|gb|EFH57815.1| hypothetical protein ARALYDRAFT_902987 [Arabidopsis lyrata subsp. lyrata] gi|330254379|gb|AEC09473.1| Yos1-like protein [Arabidopsis thaliana]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
          MGFWT +EGLLL ANA AILNEDRFLAP+ WTLAEL Q G RN+LKGQ+IGLIHAC +MR
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query: 60 LPLILLNLVTIIVKLVSG 77
          LPL+L NL+ I+ KL SG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496142|ref|XP_003516929.1| PREDICTED: immediate early response 3-interacting protein 1-like isoform 2 [Glycine max]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 65/77 (84%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL 60
          MGFWT LEG LL ANA AILNEDRFLA R WTLAE+    RN+LKGQVIGLI+ACQF+RL
Sbjct: 18 MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRL 77

Query: 61 PLILLNLVTIIVKLVSG 77
          PLIL N++TIIVKL SG
Sbjct: 78 PLILFNVITIIVKLFSG 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496140|ref|XP_003516928.1| PREDICTED: immediate early response 3-interacting protein 1-like isoform 1 [Glycine max]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 65/77 (84%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL 60
          MGFWT LEG LL ANA AILNEDRFLA R WTLAE+    RN+LKGQVIGLI+ACQF+RL
Sbjct: 1  MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRL 60

Query: 61 PLILLNLVTIIVKLVSG 77
          PLIL N++TIIVKL SG
Sbjct: 61 PLILFNVITIIVKLFSG 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62318566|dbj|BAD94948.1| hypothetical protein [Arabidopsis thaliana]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
          MGFWT +EGLLL ANA AILNEDRFLAP+ WTLAEL Q G RN+L+GQ+IGLIHAC +MR
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLEGQIIGLIHACHYMR 60

Query: 60 LPLILLNLVTIIVKLVSG 77
          LPL+L NL+ I+ KL SG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722241|ref|NP_001237493.1| uncharacterized protein LOC100500402 [Glycine max] gi|255630238|gb|ACU15474.1| unknown [Glycine max]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 65/77 (84%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL 60
          MGFWT LEG LL ANA AILNEDRFLA R WTLAE+    RN+LKGQV+GLI+ACQF+RL
Sbjct: 18 MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVMGLIYACQFLRL 77

Query: 61 PLILLNLVTIIVKLVSG 77
          PLIL N++TIIVKL SG
Sbjct: 78 PLILFNVITIIVKLFSG 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469075|ref|XP_003604822.1| hypothetical protein MTR_4g019160 [Medicago truncatula] gi|355505877|gb|AES87019.1| hypothetical protein MTR_4g019160 [Medicago truncatula]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 65/77 (84%)

Query: 1   MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL 60
           MGFWT LEGLLL ANA AILNEDRFLA R WTLAE+    RN+LKGQVIGLI+ACQF+RL
Sbjct: 116 MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPRRNSLKGQVIGLIYACQFLRL 175

Query: 61  PLILLNLVTIIVKLVSG 77
           PLIL N++ IIVKL SG
Sbjct: 176 PLILFNIIIIIVKLFSG 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332833|ref|NP_001078282.1| Yos1-like protein [Arabidopsis thaliana] gi|238480058|ref|NP_001154675.1| Yos1-like protein [Arabidopsis thaliana] gi|26450605|dbj|BAC42414.1| unknown protein [Arabidopsis thaliana] gi|26453084|dbj|BAC43618.1| unknown protein [Arabidopsis thaliana] gi|28416771|gb|AAO42916.1| At3g54082 [Arabidopsis thaliana] gi|98961619|gb|ABF59139.1| unknown protein [Arabidopsis thaliana] gi|332645664|gb|AEE79185.1| Yos1-like protein [Arabidopsis thaliana] gi|332645665|gb|AEE79186.1| Yos1-like protein [Arabidopsis thaliana]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 64/78 (82%), Gaps = 1/78 (1%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
          MGFWT L+GLLL ANA AILNEDRFL PR WTL EL Q   RN+ KGQ+IGLIHACQ+MR
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 60 LPLILLNLVTIIVKLVSG 77
          LPL+L+N   I++KL+SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830163|gb|ABK28039.1| unknown [Arabidopsis thaliana]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 64/78 (82%), Gaps = 1/78 (1%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
          MGFWT L+GLLL ANA AILNEDRFL PR WTL EL Q   RN+ KGQ+IGLIHACQ+MR
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 60 LPLILLNLVTIIVKLVSG 77
          LPL+L+N   I++KL+SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109396|ref|XP_002315182.1| predicted protein [Populus trichocarpa] gi|118482465|gb|ABK93155.1| unknown [Populus trichocarpa] gi|222864222|gb|EEF01353.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 62/77 (80%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL 60
          MG WT LEG LLLANAFAILNEDRFLAPR W+ +E   G   +LKGQ+IGLI+A Q+MR+
Sbjct: 1  MGLWTLLEGFLLLANAFAILNEDRFLAPRGWSFSEFSVGRTKSLKGQLIGLIYATQYMRV 60

Query: 61 PLILLNLVTIIVKLVSG 77
          PLI+LN + I VKLVSG
Sbjct: 61 PLIILNSICIFVKLVSG 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101087|ref|XP_002312137.1| predicted protein [Populus trichocarpa] gi|222851957|gb|EEE89504.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 62/77 (80%)

Query: 1  MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQFMRL 60
          MG WT LEG LLLANAFAILNEDRFLAPR W+ +E   G   +LKGQ+IGLI+A Q+MR+
Sbjct: 1  MGLWTLLEGFLLLANAFAILNEDRFLAPRGWSFSEFSVGRTKSLKGQLIGLIYATQYMRV 60

Query: 61 PLILLNLVTIIVKLVSG 77
          PL++LN + I VKLVSG
Sbjct: 61 PLVILNSICIFVKLVSG 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
TAIR|locus:505006304	78	AT2G37975 "AT2G37975" [Arabido	1.0	0.987	0.615	1.9e-21
TAIR|locus:4010713831	78	AT3G54085 "AT3G54085" [Arabido	1.0	0.987	0.576	9.2e-20
FB|FBgn0052069	80	CG32069 [Drosophila melanogast	0.961	0.925	0.368	4.3e-06
WB|WBGene00012371	80	W09G3.8 [Caenorhabditis elegan	1.0	0.962	0.320	1.5e-05
POMBASE|SPAC19A8.09	81	SPAC19A8.09 "ER to Golgi trans	0.987	0.938	0.341	0.00021

TAIR|locus:505006304 AT2G37975 "AT2G37975" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/78 (61%), Positives = 56/78 (71%)

Query:     1 MGFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
             MGFWT +EG            EDRFLAP+ WTLAEL Q G RN+LKGQ+IGLIHAC +MR
Sbjct:     1 MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query:    60 LPLILLNLVTIIVKLVSG 77
             LPL+L NL+ I+ KL SG
Sbjct:    61 LPLMLFNLIVIVFKLFSG 78

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713831 AT3G54085 "AT3G54085" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 45/78 (57%), Positives = 54/78 (69%)

Query:     1 MGFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTLAEL-QAGGRNTLKGQVIGLIHACQFMR 59
             MGFWT L+G            EDRFL PR WTL EL Q   RN+ KGQ+IGLIHACQ+MR
Sbjct:     1 MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query:    60 LPLILLNLVTIIVKLVSG 77
             LPL+L+N   I++KL+SG
Sbjct:    61 LPLMLINTAVIVLKLISG 78

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0052069 CG32069 [Drosophila melanogaster (taxid:7227)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 28/76 (36%), Positives = 39/76 (51%)

Query:     4 WTFLEGXXXXXXXXXXXXEDRFLAPRRW-TLAELQAGGRNTLKGQVIGLIHACQFM-RLP 61
             WT +E             E+RFLA   W   A  Q  G  T K QV+ LI + + + ++P
Sbjct:     5 WTLIESSLLCLNAVCILHEERFLAKFGWGRQAGQQDFGAPTAKDQVLNLIRSIRTVAKIP 64

Query:    62 LILLNLVTIIVKLVSG 77
             LI LN++ II KL+ G
Sbjct:    65 LIFLNIIAIIFKLLLG 80

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00012371 W09G3.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query:     1 MGFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTLAELQAGGRNTLKGQVIGLIHACQ-FMR 59
             + F+  LE              +RFL             G N++K Q++ LI A Q  MR
Sbjct:     3 LSFYALLEAALLVLNGIAILHRERFLKKYGLGAPSHSFDGSNSVKDQLVSLIFAVQTVMR 62

Query:    60 LPLILLNLVTIIVKLVSG 77
             +PLI +N+V I+ KL+ G
Sbjct:    63 MPLIAINIVVIVFKLILG 80

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC19A8.09 SPAC19A8.09 "ER to Golgi transport protein Yos1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 27/79 (34%), Positives = 37/79 (46%)

Query:     2 GFWTFLEGXXXXXXXXXXXXEDRFLAPRRWTL-AELQAGGR-NTLKGQVIGLIHACQ-FM 58
             GF   L              EDRFL    W+  A L  G R +T+K +++ LI A +  M
Sbjct:     3 GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVM 62

Query:    59 RLPLILLNLVTIIVKLVSG 77
               PLI +N + I+  LV G
Sbjct:    63 TFPLIAINTIVIVYNLVLG 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.146   0.464    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       77        65   0.00091  102 3  11 21  0.50    27
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  88 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.88u 0.14s 7.02t   Elapsed:  00:00:01
  Total cpu time:  6.88u 0.14s 7.02t   Elapsed:  00:00:01
  Start:  Fri May 10 04:12:32 2013   End:  Fri May 10 04:12:33 2013

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O13825	YOS1_SCHPO	No assigned EC number	0.4430	0.9870	0.9382	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_402488.1 annotation not avaliable (78 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	77
pfam08571	80	pfam08571, Yos1, Yos1-like	2e-22

>gnl|CDD|192073 pfam08571, Yos1, Yos1-like

 Score = 81.5 bits (202), Expect = 2e-22
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 3  FWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQAGG----RNTLKGQVIGLIHACQ-F 57
            + L  +LLL NA AIL+EDRFLA   W+ +     G     N++K Q+I LI A +  
Sbjct: 1  LGSLLYAILLLLNAIAILSEDRFLARIGWSSSAASGNGGGSSENSIKSQIINLISAVRTL 60

Query: 58 MRLPLILLNLVTIIVKLVSG 77
          MR+PLI +N++ I+ +LV G
Sbjct: 61 MRIPLIAINIIVIVYELVLG 80

In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
PF08571	80	Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos	100.0
KOG4779	82	consensus Predicted membrane protein [Function unk	100.0

>PF08571 Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex

Probab=100.00  E-value=2.6e-42  Score=221.32  Aligned_cols=75  Identities=47%  Similarity=0.763  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHHHhhcccccccccCcchhhhcc-C---CCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhcC
Q 034974            3 FWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQA-G---GRNTLKGQVIGLIHACQ-FMRLPLILLNLVTIIVKLVSG   77 (77)
Q Consensus         3 l~~ll~a~LL~~NAiaILnE~RFL~kiGw~~~~~~~-~---~~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~Ll~G   77 (77)
                      ||+++|+++||+||+|||||||||+|+||++++.++ |   +++|+|+|+++||+||| |||+|||++|+++|+|||+||
T Consensus         1 l~~Ll~a~LL~iNAiAILnE~RFL~kiGw~~~~~~~~g~~~~~~siK~qii~LI~aVrT~mRiPLI~iN~~vIv~~Lv~G   80 (80)
T PF08571_consen    1 LGSLLYASLLLINAIAILNEDRFLAKIGWSSSQNSGFGFGGDPNSIKAQIINLIRAVRTLMRIPLIFINILVIVYELVFG   80 (80)
T ss_pred             CHHHHHHHHHHHHHHHHcCHHHHhccCCCCCccccccccCCCCcCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence            699999999999999999999999999999988755 3   78999999999999999 999999999999999999998

Yos1 appears to be conserved in eukaryotes [].

>KOG4779 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2e-38  Score=203.02  Aligned_cols=77  Identities=39%  Similarity=0.649  Sum_probs=73.5

Q ss_pred             CchHHHHHHHHHHHHHHHhhcccccccccCcchhhhcc-C-CCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhcC
Q 034974            1 MGFWTFLEGLLLLANAFAILNEDRFLAPRRWTLAELQA-G-GRNTLKGQVIGLIHACQ-FMRLPLILLNLVTIIVKLVSG   77 (77)
Q Consensus         1 ~~l~~ll~a~LL~~NAiaILnE~RFL~kiGw~~~~~~~-~-~~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~Ll~G   77 (77)
                      ||+++++|+++||+||+|||||||||+|+||++|+..+ | +++++|+|+++||+||| +||+|||++|+++|+|+|++|
T Consensus         3 Fglg~llyv~LLlvNAvAvLsEeRFL~riGws~d~~~gFG~~q~tiKS~~~~LIravrTvmrvPLI~iN~ivIVy~LllG   82 (82)
T KOG4779|consen    3 FGLGSLLYVALLLVNAVAVLSEERFLKRIGWSTDQGIGFGEDQPTIKSQLMNLIRAVRTVMRVPLIIINSIVIVYLLLLG   82 (82)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCcccCcccCCCCccHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhC
Confidence            78999999999999999999999999999999998765 4 57999999999999999 999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00