Citrus Sinensis ID: 034996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYPHHPAAAPSPSPSDPAV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAAITVAIIAIAGVVLGWIAIEMACKPClekgreaidqslnpdydpdgdadtniraplyphhpaaapspspsdpav
Flexible Loop (DISEMBL)
MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYPHhpaaapspspsdpav
Low Complexity Region (SEG)
MaaitvaiiaiagvvlgwiaiEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRaplyphhpaaapspspsdpaV
Disordered region (IsUnstruct)
**AITVAIIAIAGVVLGWIAIEMACKPCLEK*********************************************
Disordered Region (DISOPRED)
****TVAIIAIAGVVLGWIAIEMACKPCLEKG********************************************
Disordered Region (DISEMBL)
MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYPHH**************
Disordered Region (DISPRO)
*AAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDP*******IRA********************
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYPHHPAAAPSPSPSDPAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
225443878	85	PREDICTED: uncharacterized protein LOC10	0.921	0.823	0.648	3e-19
224116100	59	predicted protein [Populus trichocarpa]	0.75	0.966	0.783	1e-17
449433730	86	PREDICTED: uncharacterized protein LOC10	0.789	0.697	0.721	6e-17
255557281	75	conserved hypothetical protein [Ricinus	0.736	0.746	0.758	1e-16
357447267	70	hypothetical protein MTR_2g019240 [Medic	0.907	0.985	0.633	5e-16
116790805	77	unknown [Picea sitchensis] gi|148910510|	0.894	0.883	0.573	2e-14
18403595	81	uncharacterized protein [Arabidopsis tha	0.947	0.888	0.613	5e-14
297826925	81	hypothetical protein ARALYDRAFT_902544 [	0.947	0.888	0.6	2e-13
242042974	85	hypothetical protein SORBIDRAFT_02g00325	0.631	0.564	0.687	2e-12
357111592	83	PREDICTED: uncharacterized protein LOC10	0.618	0.566	0.702	3e-12

>gi|225443878|ref|XP_002277427.1| PREDICTED: uncharacterized protein LOC100243015 [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYP 60
          M  +T A+IAIAGVVLGWI IE+ACKPCLE+GR+AID+SLNPDYDPD D + +IRAPL P
Sbjct: 1  MGGLTSAVIAIAGVVLGWITIEIACKPCLEQGRQAIDRSLNPDYDPDDDQNVDIRAPLNP 60

Query: 61 HHPAAAPSPSPSDP 74
              ++  P  SDP
Sbjct: 61 ----SSSLPQDSDP 70

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116100|ref|XP_002331997.1| predicted protein [Populus trichocarpa] gi|118481900|gb|ABK92885.1| unknown [Populus trichocarpa] gi|222874765|gb|EEF11896.1| predicted protein [Populus trichocarpa]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 52/60 (86%), Gaps = 3/60 (5%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYP 60
          MAA+T A+IAIAGVVLGWIAIE+ACKPCLEKGREAID+SLNPDYDPD   D  IR P+ P
Sbjct: 1  MAAVTSALIAIAGVVLGWIAIEIACKPCLEKGREAIDRSLNPDYDPD---DDEIRVPINP 57

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433730|ref|XP_004134650.1| PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus] gi|449519468|ref|XP_004166757.1| PREDICTED: uncharacterized protein LOC101224807 [Cucumis sativus]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 51/61 (83%), Gaps = 1/61 (1%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYP 60
          M AIT A+IAI  VV GWI IE+ACKPCLEKGREAID+SLNPD+DPD D  ++IRAPL P
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPD-DEVSDIRAPLNP 59

Query: 61 H 61
          +
Sbjct: 60 N 60

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557281|ref|XP_002519671.1| conserved hypothetical protein [Ricinus communis] gi|223541088|gb|EEF42644.1| conserved hypothetical protein [Ricinus communis]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 2/58 (3%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPL 58
          MAAIT A+IA+AGV+LGWIAIEMACKPCLE+GR AI +SLNPDYDPD   D N+ APL
Sbjct: 1  MAAITSALIAVAGVILGWIAIEMACKPCLEQGRNAIGRSLNPDYDPDD--DLNVHAPL 56

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447267|ref|XP_003593909.1| hypothetical protein MTR_2g019240 [Medicago truncatula] gi|355482957|gb|AES64160.1| hypothetical protein MTR_2g019240 [Medicago truncatula]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDG-DADTNIRAPLY 59
          M AIT A+IA+ GV+LGWI IE+ACKPCLE+GR+AID++LNPDYDPD  D+   +RAPL 
Sbjct: 1  MGAITGAVIAVVGVILGWITIEIACKPCLEQGRQAIDRNLNPDYDPDDEDSAAAVRAPLN 60

Query: 60 PHHPAAAPSPS 70
          P  P AA + S
Sbjct: 61 P-APVAAKTVS 70

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790805|gb|ABK25746.1| unknown [Picea sitchensis] gi|148910510|gb|ABR18330.1| unknown [Picea sitchensis]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 48/68 (70%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYP 60
          M A+  A IAI G++LGW+AIEMACKPCLE GR AID+SL+P+YDPD + D +   P Y 
Sbjct: 1  MGALVTAAIAIVGLILGWVAIEMACKPCLEAGRNAIDRSLDPNYDPDENIDRSSGLPAYQ 60

Query: 61 HHPAAAPS 68
            P   PS
Sbjct: 61 ALPDQEPS 68

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403595|ref|NP_565793.1| uncharacterized protein [Arabidopsis thaliana] gi|20197084|gb|AAM14909.1| Expressed protein [Arabidopsis thaliana] gi|21554021|gb|AAM63102.1| unknown [Arabidopsis thaliana] gi|51968766|dbj|BAD43075.1| hypothetical protein [Arabidopsis thaliana] gi|51970512|dbj|BAD43948.1| hypothetical protein [Arabidopsis thaliana] gi|51970622|dbj|BAD44003.1| hypothetical protein [Arabidopsis thaliana] gi|51971725|dbj|BAD44527.1| hypothetical protein [Arabidopsis thaliana] gi|51971883|dbj|BAD44606.1| hypothetical protein [Arabidopsis thaliana] gi|51971887|dbj|BAD44608.1| hypothetical protein [Arabidopsis thaliana] gi|88010859|gb|ABD38864.1| At2g34585 [Arabidopsis thaliana] gi|330253901|gb|AEC08995.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNP---DYDPDGDADTNIRAP 57
          MAAIT A+IAIAG++LGWI IE+ACKPCLE GREAID+SLNP     D D D+ +++RAP
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVRAP 60

Query: 58 LYPHHPAAAPSPSPS 72
          L P+HP     P P+
Sbjct: 61 LIPNHPPDNSDPDPT 75

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826925|ref|XP_002881345.1| hypothetical protein ARALYDRAFT_902544 [Arabidopsis lyrata subsp. lyrata] gi|297327184|gb|EFH57604.1| hypothetical protein ARALYDRAFT_902544 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 3/75 (4%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNP---DYDPDGDADTNIRAP 57
          MAAIT A+IAIAG++LGWI IE+ACKPCLE GREAID+SLNP     D D D  +++ AP
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLETGREAIDRSLNPDYDPDDQDVDTSSDLHAP 60

Query: 58 LYPHHPAAAPSPSPS 72
          L P+ P     P PS
Sbjct: 61 LIPNLPPDNSDPDPS 75

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242042974|ref|XP_002459358.1| hypothetical protein SORBIDRAFT_02g003250 [Sorghum bicolor] gi|241922735|gb|EER95879.1| hypothetical protein SORBIDRAFT_02g003250 [Sorghum bicolor]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDG 48
          M A+  A+IAIA VVLGWI IEMACKPCLE GR A+D++L+P+YDPD 
Sbjct: 1  MGAVVTAVIAIAAVVLGWITIEMACKPCLETGRRAMDRALDPNYDPDS 48

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111592|ref|XP_003557596.1| PREDICTED: uncharacterized protein LOC100843802 [Brachypodium distachyon]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 40/47 (85%)

Query: 1  MAAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPD 47
          M A+  A+IAIA VVLGWI IEMACKPCLE GR A+D++L+P+YDPD
Sbjct: 1  MGAVVTAVIAIAAVVLGWITIEMACKPCLETGRRAMDRALDPNYDPD 47

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:505006290	81	AT2G34585 "AT2G34585" [Arabido	0.421	0.395	0.757	1.8e-09

TAIR|locus:505006290 AT2G34585 "AT2G34585" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query:    22 EMACKPCLEKGREAIDQSLNPDYDPDG-DADTN 53
             E+ACKPCLE GREAID+SLNPDYDPD  D D++
Sbjct:    22 ELACKPCLESGREAIDRSLNPDYDPDDQDVDSS 54


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.136   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        36   0.00091  102 3  11 23  0.35    26
                                                     29  0.47    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  381 (41 KB)
  Total size of DFA:  63 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.09u 0.10s 7.19t   Elapsed:  00:00:01
  Total cpu time:  7.09u 0.10s 7.19t   Elapsed:  00:00:01
  Start:  Fri May 10 04:30:34 2013   End:  Fri May 10 04:30:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028308001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (85 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00