Citrus Sinensis ID: 035017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNLG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqefnfadnlhiwdtllsdpdgpqetqLRVCCVMLILIRRRLLAGDITSnlkllqnypptnisHLLYVANKLRNLG
Flexible Loop (DISEMBL)
MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKllqnypptnishLLYVANKLRNLG
Low Complexity Region (SEG)
MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNLG
Disordered region (IsUnstruct)
****NFADNLHIWDTLLSDPD*PQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANK*****
Disordered Region (DISOPRED)
MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNLG
Disordered Region (DISEMBL)
MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNLG
Disordered Region (DISPRO)
**EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q9NVG8	400	TBC1 domain family member	yes	no	0.947	0.18	0.465	3e-11
Q8R3D1	400	TBC1 domain family member	yes	no	0.947	0.18	0.465	6e-11

>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEF   D + IWD+L +D D   +  L VCC ML+LIR +LL GD T N++LLQ+YP T+
Sbjct: 327 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPITD 385

Query: 62  ISHLLYVANKLRN 74
           +  +L  A +L++
Sbjct: 386 VCQILQKAKELQD 398

May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)

>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEF   D + IWD+L +D +   +  L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct: 327 QEFLLPDVIRIWDSLFADGNR-FDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 385

Query: 62  ISHLLYVANKLRN 74
           +  +L  A +L++
Sbjct: 386 VCQILQKAKELQD 398

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
255554050	468	conserved hypothetical protein [Ricinus	0.947	0.153	0.916	3e-32
115441721	368	Os01g0908100 [Oryza sativa Japonica Grou	0.934	0.192	0.887	2e-31
218189570	368	hypothetical protein OsI_04852 [Oryza sa	0.934	0.192	0.887	2e-31
223942745	367	unknown [Zea mays]	0.934	0.193	0.873	2e-31
224060367	356	predicted protein [Populus trichocarpa]	0.947	0.202	0.902	3e-31
225433604	437	PREDICTED: TBC1 domain family member 13	0.947	0.164	0.888	3e-31
15236337	449	RabGAP/TBC domain-containing protein [Ar	0.947	0.160	0.847	4e-31
297804944	452	RabGAP/TBC domain-containing protein [Ar	0.947	0.159	0.847	5e-31
242059607	367	hypothetical protein SORBIDRAFT_03g04324	0.947	0.196	0.875	5e-31
224128968	339	predicted protein [Populus trichocarpa]	0.960	0.215	0.876	5e-31

>gi|255554050|ref|XP_002518065.1| conserved hypothetical protein [Ricinus communis] gi|223542661|gb|EEF44198.1| conserved hypothetical protein [Ricinus communis]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 69/72 (95%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD+LHIWDTLLSDP+GPQET LR+CC MLILIRRRLLAGD TSNLKLLQNYPPTN
Sbjct: 392 QEFNFADSLHIWDTLLSDPEGPQETLLRICCTMLILIRRRLLAGDFTSNLKLLQNYPPTN 451

Query: 62  ISHLLYVANKLR 73
           ISHLLYVANKLR
Sbjct: 452 ISHLLYVANKLR 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441721|ref|NP_001045140.1| Os01g0908100 [Oryza sativa Japonica Group] gi|56785115|dbj|BAD82753.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group] gi|56785363|dbj|BAD82321.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group] gi|113534671|dbj|BAF07054.1| Os01g0908100 [Oryza sativa Japonica Group] gi|215701486|dbj|BAG92910.1| unnamed protein product [Oryza sativa Japonica Group] gi|222619721|gb|EEE55853.1| hypothetical protein OsJ_04475 [Oryza sativa Japonica Group]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 67/71 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD +HIWDTLLSDPDGPQET LR+CC MLIL+R+RLLAGD TSNLKLLQNYPPTN
Sbjct: 297 QEFNFADTIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTN 356

Query: 62  ISHLLYVANKL 72
           ISHLLYVANKL
Sbjct: 357 ISHLLYVANKL 367

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189570|gb|EEC71997.1| hypothetical protein OsI_04852 [Oryza sativa Indica Group]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 67/71 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD +HIWDTLLSDPDGPQET LR+CC MLIL+R+RLLAGD TSNLKLLQNYPPTN
Sbjct: 297 QEFNFADTIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTN 356

Query: 62  ISHLLYVANKL 72
           ISHLLYVANKL
Sbjct: 357 ISHLLYVANKL 367

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223942745|gb|ACN25456.1| unknown [Zea mays]

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/71 (87%), Positives = 66/71 (92%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD +HIWDTLLSDP GPQET LR+CC MLIL+R+RLLAGD TSNLKLLQNYPPTN
Sbjct: 296 QEFNFADTIHIWDTLLSDPGGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTN 355

Query: 62  ISHLLYVANKL 72
           ISHLLYVANKL
Sbjct: 356 ISHLLYVANKL 366

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060367|ref|XP_002300164.1| predicted protein [Populus trichocarpa] gi|222847422|gb|EEE84969.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 68/72 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD+LHIWDTLLSDP+GPQET LRVCC MLILIRRRLLAGD TS LKLLQNYPPTN
Sbjct: 285 QEFNFADSLHIWDTLLSDPEGPQETLLRVCCAMLILIRRRLLAGDFTSILKLLQNYPPTN 344

Query: 62  ISHLLYVANKLR 73
           ISH+LYVANKLR
Sbjct: 345 ISHMLYVANKLR 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433604|ref|XP_002271213.1| PREDICTED: TBC1 domain family member 13 [Vitis vinifera] gi|298205157|emb|CBI17216.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 68/72 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD+LHIWDTLLSDP+GPQET LR+CC MLIL+RRRLLAGD TSNLKLLQNYP TN
Sbjct: 361 QEFNFADSLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPSTN 420

Query: 62  ISHLLYVANKLR 73
           ISHLLYVANKLR
Sbjct: 421 ISHLLYVANKLR 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236337|ref|NP_193109.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|4455302|emb|CAB36837.1| putative protein [Arabidopsis thaliana] gi|7268077|emb|CAB78415.1| putative protein [Arabidopsis thaliana] gi|332657918|gb|AEE83318.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 68/72 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNF ++LHIWDTLLSDP+GPQET LR+CC MLIL+RRRLLAGD TSNLKLLQNYPPTN
Sbjct: 376 QEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPPTN 435

Query: 62  ISHLLYVANKLR 73
           ISH+LYVA+KLR
Sbjct: 436 ISHMLYVADKLR 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804944|ref|XP_002870356.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316192|gb|EFH46615.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 68/72 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNF ++LHIWDTLLSDP+GPQET LR+CC MLIL+RRRLLAGD TSNLKLLQNYPPTN
Sbjct: 379 QEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPPTN 438

Query: 62  ISHLLYVANKLR 73
           ISH+LYVA+KLR
Sbjct: 439 ISHMLYVADKLR 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059607|ref|XP_002458949.1| hypothetical protein SORBIDRAFT_03g043240 [Sorghum bicolor] gi|241930924|gb|EES04069.1| hypothetical protein SORBIDRAFT_03g043240 [Sorghum bicolor]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 68/72 (94%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD +HIWDTLLSDPDGPQET LR+CC MLIL+R+RLLAGD TSNLKLLQNYPPTN
Sbjct: 296 QEFNFADIIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPTN 355

Query: 62  ISHLLYVANKLR 73
           ISHLLYVANKL+
Sbjct: 356 ISHLLYVANKLQ 367

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128968|ref|XP_002328857.1| predicted protein [Populus trichocarpa] gi|222839287|gb|EEE77624.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 68/73 (93%)

Query: 2   QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
           QEFNFAD++HIWDTLLSDP+GPQET LRVCC MLIL+RRRLLAGD TS LKLLQNYPPTN
Sbjct: 263 QEFNFADSIHIWDTLLSDPEGPQETLLRVCCAMLILVRRRLLAGDFTSILKLLQNYPPTN 322

Query: 62  ISHLLYVANKLRN 74
           ISHLLYVANKLR 
Sbjct: 323 ISHLLYVANKLRG 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2119435	449	AT4G13730 [Arabidopsis thalian	0.947	0.160	0.847	1.1e-30
UNIPROTKB|B3KW04	219	TBC1D13 "TBC1 domain family me	0.947	0.328	0.465	1.5e-12
UNIPROTKB|E2RQB4	400	TBC1D13 "Uncharacterized prote	0.947	0.18	0.479	3.6e-12
UNIPROTKB|F1RR65	400	TBC1D13 "Uncharacterized prote	0.947	0.18	0.479	3.6e-12
UNIPROTKB|J9NWF3	403	TBC1D13 "Uncharacterized prote	0.947	0.178	0.479	3.7e-12
UNIPROTKB|Q9NVG8	400	TBC1D13 "TBC1 domain family me	0.947	0.18	0.465	7.7e-12
UNIPROTKB|F1MXD4	399	TBC1D13 "Uncharacterized prote	0.947	0.180	0.465	2.1e-11
MGI|MGI:2385326	400	Tbc1d13 "TBC1 domain family, m	0.947	0.18	0.465	2.1e-11
RGD|1591937	400	Tbc1d13 "TBC1 domain family, m	0.947	0.18	0.452	7.4e-11
ZFIN|ZDB-GENE-080204-86	414	tbc1d13 "TBC1 domain family, m	0.789	0.144	0.524	1.7e-10

TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 61/72 (84%), Positives = 68/72 (94%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEFNF ++LHIWDTLLSDP+GPQET LR+CC MLIL+RRRLLAGD TSNLKLLQNYPPTN
Sbjct:   376 QEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPPTN 435

Query:    62 ISHLLYVANKLR 73
             ISH+LYVA+KLR
Sbjct:   436 ISHMLYVADKLR 447

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|B3KW04 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D D   +  L VCC ML+LIR +LL GD T N++LLQ+YP T+
Sbjct:   146 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPITD 204

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   205 VCQILQKAKELQD 217

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E2RQB4 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D D   +  L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct:   327 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 385

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   386 VCQILQKAKELQD 398

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D D   +  L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct:   327 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 385

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   386 VCQILQKAKELQD 398

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|J9NWF3 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D D   +  L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct:   330 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 388

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   389 VCQILQKAKELQD 401

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 7.7e-12, P = 7.7e-12
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D D   +  L VCC ML+LIR +LL GD T N++LLQ+YP T+
Sbjct:   327 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPITD 385

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   386 VCQILQKAKELQD 398

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MXD4 TBC1D13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D +   +  L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct:   326 QEFVLPDVIRIWDSLFADSNR-FDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 384

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   385 VCQVLQKAKELQD 397

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

MGI|MGI:2385326 Tbc1d13 "TBC1 domain family, member 13" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D +   +  L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct:   327 QEFLLPDVIRIWDSLFADGNR-FDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 385

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   386 VCQILQKAKELQD 398

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

RGD|1591937 Tbc1d13 "TBC1 domain family, member 13" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/73 (45%), Positives = 49/73 (67%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L +D +   +  L VCC MLILIR +LL GD T N++LLQ+YP ++
Sbjct:   327 QEFLLPDVIRIWDSLFADGNR-FDFLLLVCCAMLILIREQLLKGDFTVNMRLLQDYPISD 385

Query:    62 ISHLLYVANKLRN 74
             +  +L  A +L++
Sbjct:   386 VCKILQKAKELQD 398

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query:     2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
             QEF   D + IWD+L S  D   E  + VCC MLILIR +LLAGD T+N++LLQ+YP ++
Sbjct:   327 QEFLLPDVIRIWDSLFSHQDR-FEFLIPVCCAMLILIRDQLLAGDFTTNMRLLQDYPISD 385

Query:    62 I 62
             +
Sbjct:   386 V 386

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BGIOSIBCE004666 annotation not avaliable (321 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG4567	370	consensus GTPase-activating protein [General funct	99.91
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	99.83
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.61
KOG1093	725	consensus Predicted protein kinase (contains TBC a	99.16
KOG2224	781	consensus Uncharacterized conserved protein, conta	98.35
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	98.23
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	97.98
KOG2223	586	consensus Uncharacterized conserved protein, conta	97.96
COG5210	496	GTPase-activating protein [General function predic	97.7
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	97.48
KOG2595	395	consensus Predicted GTPase activator protein [Sign	97.04
KOG3636	669	consensus Uncharacterized conserved protein, conta	96.42
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	96.11
KOG2222	848	consensus Uncharacterized conserved protein, conta	95.76
PRK05255	171	hypothetical protein; Provisional	87.24
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	86.36
KOG4347	671	consensus GTPase-activating protein VRP [General f	86.2
PF04751	157	DUF615: Protein of unknown function (DUF615); Inte	81.25

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=99.91  E-value=1e-24  Score=150.85  Aligned_cols=73  Identities=55%  Similarity=0.973  Sum_probs=70.9

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRN   74 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv~~ll~~A~~l~~   74 (76)
                      +||||++||++|||++||+++ .++|+.|+|+|||+..|+.|+++||+.+|++|||||+.|++.++..|.++|+
T Consensus       289 sQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~~A~~Lr~  361 (370)
T KOG4567|consen  289 SQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTDISKMLAVADSLRD  361 (370)
T ss_pred             hccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999998 8999999999999999999999999999999999999999999999999984

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=7.3e-21  Score=135.51  Aligned_cols=74  Identities=34%  Similarity=0.612  Sum_probs=70.5

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT-----NISHLLYVANKLRN   74 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~   74 (76)
                      +||||+.-++|+||+|+|++++..+||+|+|+|.|+++|++|+++||.+.|.+|||+|+.     +++.++..|+.++.
T Consensus       396 mRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~  474 (484)
T KOG1092|consen  396 MREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKS  474 (484)
T ss_pred             HhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence            599999999999999999988899999999999999999999999999999999999985     69999999998764

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2e-15  Score=110.67  Aligned_cols=72  Identities=29%  Similarity=0.492  Sum_probs=68.8

Q ss_pred             cccchhcHHHHHH-HHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC-CCHHHHHHHHHhhhh
Q 035017            2 QEFNFADNLHIWD-TLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP-TNISHLLYVANKLRN   74 (76)
Q Consensus         2 rEf~l~~~~~lWD-~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~-~dv~~ll~~A~~l~~   74 (76)
                      ||||+.|++.+|| +++++.. +..++.|+.||||+++|+.|+..++..|++.|.|||. .|++.+++.|..++.
T Consensus       290 REfpL~dLLiVWD~~l~~d~p-r~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~~  363 (625)
T KOG1091|consen  290 REFPLQDLLIVWDHVLIFDSP-RGILVACMFVSMLLYIRDSLLSSEYQTCLQYLMNYPEIIDVDKFIEKALHLQK  363 (625)
T ss_pred             chhHHHHHHHHhhhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            8999999999999 8888876 8999999999999999999999999999999999998 699999999999985

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=99.16  E-value=4.8e-11  Score=88.43  Aligned_cols=71  Identities=23%  Similarity=0.386  Sum_probs=67.2

Q ss_pred             cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Q 035017            2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNL   75 (76)
Q Consensus         2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv~~ll~~A~~l~~~   75 (76)
                      -+||++..+.+||.++.+++   .|.+++++|++.+.|+.|+..+|.||+.++...|+.|++.++++.+++.+.
T Consensus       522 hvlpl~kil~LwD~lml~~~---SFplmi~vAil~~lR~~LLa~nfne~illf~d~pdldId~~Ires~~l~e~  592 (725)
T KOG1093|consen  522 HVLPLHKILHLWDNLMLGHS---SFPLMIGVAILIQLRDPLLACNFNECILLFSDLPDLDIDVCIRESYHLMET  592 (725)
T ss_pred             hhccHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhhhhhhhCCchhheeeeccCCcccHHHHHHHHhhhhhC
Confidence            47999999999999999987   899999999999999999999999999999999999999999999988764

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=98.35  E-value=5.8e-07  Score=65.89  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=60.5

Q ss_pred             cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC--HHHHHHHHhCCCC-CCHHHHHHHHHhh
Q 035017            2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD--ITSNLKLLQNYPP-TNISHLLYVANKL   72 (76)
Q Consensus         2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d--f~~~l~~Lq~~p~-~dv~~ll~~A~~l   72 (76)
                      ||||-+.++|+|++.||+.- ...||+|+|+|++-...++.++.+  -.+.+..+.|+.. +|-+-++++|..+
T Consensus       656 ref~ea~airiweacwa~y~-tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~l  728 (781)
T KOG2224|consen  656 REFPEAEAIRIWEACWAHYL-TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGL  728 (781)
T ss_pred             hcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHH
Confidence            89999999999999999865 679999999999999999988755  3577777788877 6999999998754

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=98.23  E-value=1.5e-06  Score=55.83  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL   43 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll   43 (76)
                      ++++|.++++++|| ++.++.  ..++.++|+|++...|++||
T Consensus       175 ~~~l~~~~~~~lwD-~l~~g~--~~~l~~~~lail~~~~~~il  214 (214)
T PF00566_consen  175 SRSLPFDDVLRLWD-FLLEGY--KFFLFFIALAILKYLRDQIL  214 (214)
T ss_dssp             TTTS-HHHHHHHHH-HHHHCT--THHHHHHHHHHHHHTHHHHH
T ss_pred             CCcCCHHHHHHHHH-HHHcCC--CcHHHHHHHHHHHHHHHHhC
Confidence            47899999999999 444543  24499999999999999986

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=97.98  E-value=1.9e-05  Score=58.08  Aligned_cols=71  Identities=24%  Similarity=0.381  Sum_probs=60.2

Q ss_pred             cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHhCCCC-CCHHHHHHHHHhhh
Q 035017            2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG--DITSNLKLLQNYPP-TNISHLLYVANKLR   73 (76)
Q Consensus         2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~--df~~~l~~Lq~~p~-~dv~~ll~~A~~l~   73 (76)
                      |||..+|+++||+.+|++.. ..+|++|++.|++-.-++.|+..  +|.+.++.....+. .|...++..|....
T Consensus       368 rEf~~ed~l~LWEvlw~~~~-~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~  441 (488)
T KOG2197|consen  368 REFEFEDSLRLWEVLWTDLP-SPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALE  441 (488)
T ss_pred             cccccccHHHHHHHHHhcCc-cchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHH
Confidence            89999999999999999876 55999999999999988888864  58888887866665 68888888877654

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=97.96  E-value=1.9e-05  Score=57.88  Aligned_cols=60  Identities=22%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC-CCHHH
Q 035017            2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP-TNISH   64 (76)
Q Consensus         2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~-~dv~~   64 (76)
                      ...|++-..|+||+++-+++   +|.+-.+++++...+++|+.+||..+.++|-++|. .-.+.
T Consensus       486 kslpldlacRIwDvy~rdge---eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~ee  546 (586)
T KOG2223|consen  486 KSLPLDLACRIWDVYCRDGE---EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEE  546 (586)
T ss_pred             ccCChHHhhhhhheeeecch---HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHH
Confidence            35688999999999999987   99999999999999999999999999999999997 44333

>COG5210 GTPase-activating protein [General function prediction only]

Probab=97.70  E-value=7e-05  Score=54.84  Aligned_cols=46  Identities=28%  Similarity=0.517  Sum_probs=38.4

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHH
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITS   49 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~   49 (76)
                      .++||++.++|+||++|+++.   ++..-+.+|++...|++++..+...
T Consensus       388 ~~~~p~e~~lriwD~lf~eg~---~~l~~~~~~~l~~~~~~l~~~~~~~  433 (496)
T COG5210         388 VREFPLEYALRIWDCLFLEGS---SMLFQLALAILKLLRDKLLKLDSDE  433 (496)
T ss_pred             HhcCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhccCchh
Confidence            379999999999999999987   7777788888888888888766543

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.00025  Score=51.76  Aligned_cols=52  Identities=23%  Similarity=0.383  Sum_probs=42.7

Q ss_pred             cchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC-HHHHHHHHhCCC
Q 035017            4 FNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD-ITSNLKLLQNYP   58 (76)
Q Consensus         4 f~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d-f~~~l~~Lq~~p   58 (76)
                      .|.+.++|+||++|.++.   ++++-+++|++...++++++.+ -.+.++.++.+.
T Consensus       331 lP~~t~LrIwD~~f~eGs---kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~  383 (436)
T KOG2058|consen  331 LPSETVLRIWDCLFYEGS---KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLT  383 (436)
T ss_pred             ccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence            478899999999999987   8999999999999999999864 455555554444

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=97.04  E-value=0.0027  Score=45.47  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             chhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC--HHHHHHHHhCCCC-CCHHHHHHHHHh
Q 035017            5 NFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD--ITSNLKLLQNYPP-TNISHLLYVANK   71 (76)
Q Consensus         5 ~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d--f~~~l~~Lq~~p~-~dv~~ll~~A~~   71 (76)
                      ++..++|+.|.++|...   -..+|+|.|++++-|.++++.|  .+..=.+|+.+|. ...+.+++.+..
T Consensus       232 ~~~~vvRlfD~Flas~p---l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~  298 (395)
T KOG2595|consen  232 DIRIVVRLFDFFLASHP---LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVL  298 (395)
T ss_pred             hHHHHHHHHHHHHhcCc---chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHH
Confidence            45679999999999875   4999999999999999999865  4444556899997 689999988753

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=96.42  E-value=0.011  Score=43.97  Aligned_cols=67  Identities=18%  Similarity=0.341  Sum_probs=55.8

Q ss_pred             chhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--C-HHHHHHHHhCCCC----CCHHHHHHHHHhhh
Q 035017            5 NFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG--D-ITSNLKLLQNYPP----TNISHLLYVANKLR   73 (76)
Q Consensus         5 ~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~--d-f~~~l~~Lq~~p~----~dv~~ll~~A~~l~   73 (76)
                      +.+.+.-+||-|+-..+  ..++.|+++-+|+.-|++|+..  | -.+++++|.|.|.    -|++...+.|..+.
T Consensus       198 Stev~~a~WdlY~qqaD--PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~  271 (669)
T KOG3636|consen  198 STEVCHALWDLYIQQAD--PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS  271 (669)
T ss_pred             hHHHHHHHHHHHHhcCC--ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence            45677889999999875  5788889999999999999863  3 6899999999997    28999988887654

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=96.11  E-value=0.014  Score=42.17  Aligned_cols=55  Identities=27%  Similarity=0.346  Sum_probs=50.5

Q ss_pred             ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC
Q 035017            3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT   60 (76)
Q Consensus         3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~   60 (76)
                      .||++-+.++||.++.++   ......+..+++....+.+...+|.+.++.+++-++.
T Consensus       316 k~p~~~~~ri~d~~~~~g---~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~~~  370 (397)
T KOG1102|consen  316 KFPLELVLRIWDALFVEG---VSILFRFSLALLKHKADDLLDLDFESLLSYLRVDLPK  370 (397)
T ss_pred             cccHHHHHHHhHHHHHhc---hHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhcccHh
Confidence            588999999999999998   4888899999999999999999999999999998763

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=95.76  E-value=0.035  Score=41.82  Aligned_cols=66  Identities=17%  Similarity=0.324  Sum_probs=50.1

Q ss_pred             cchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHhCCCC--CCHHHHHHHHHhh
Q 035017            4 FNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLA-----GDITSNLKLLQNYPP--TNISHLLYVANKL   72 (76)
Q Consensus         4 f~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~-----~df~~~l~~Lq~~p~--~dv~~ll~~A~~l   72 (76)
                      |...-.+|+||.+|-++.   --++-+.++||.....+|.+     .+-.++...|..+|.  .|++.++++|-.+
T Consensus       345 ~~~killriwd~~fy~g~---i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~  417 (848)
T KOG2222|consen  345 FHMKILLRIWDFFFYEGG---INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEF  417 (848)
T ss_pred             HHHHHHHHHHHhheecCc---chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhc
Confidence            556678999999999875   22344667787777777654     246788899999998  5999999998654

>PRK05255 hypothetical protein; Provisional

Probab=87.24  E-value=1.6  Score=28.46  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHhCCCCCC---HHHHHHHHHh
Q 035017           33 VMLILIRRRLLAGDITSNLKLLQNYPPTN---ISHLLYVANK   71 (76)
Q Consensus        33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~d---v~~ll~~A~~   71 (76)
                      --+..+|+.|+++|-+..=.++..||..|   +..+++.|.+
T Consensus       107 h~lE~wRdrLi~~~d~al~e~~~~~P~~DrQ~LRqLiR~A~k  148 (171)
T PRK05255        107 HKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKK  148 (171)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHH
Confidence            36789999999977666777899999987   5556666654

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=86.36  E-value=2.5  Score=33.69  Aligned_cols=64  Identities=16%  Similarity=0.308  Sum_probs=53.4

Q ss_pred             ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC-HHHHHHHHhCCCC-C---CHHHHHHHH
Q 035017            3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD-ITSNLKLLQNYPP-T---NISHLLYVA   69 (76)
Q Consensus         3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d-f~~~l~~Lq~~p~-~---dv~~ll~~A   69 (76)
                      .||+-=|-|+.|.+|-.+.   +-..-++.+++-..+..|++.| |.+++.++++.-+ .   ..+.++.+-
T Consensus       754 Qf~lGfvarvfd~~flq~t---evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~emeki~~qv  822 (948)
T KOG4436|consen  754 QFPLGFVARVFDLIFLQGT---EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTEMEKIIKQV  822 (948)
T ss_pred             hCcchHHHHHHHHHHhhcc---chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            5788889999999999876   8888999999999999999987 9999999998755 2   455555543

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=86.20  E-value=1.5  Score=33.94  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=45.8

Q ss_pred             ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHhCC
Q 035017            3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG-DITSNLKLLQNY   57 (76)
Q Consensus         3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~-df~~~l~~Lq~~   57 (76)
                      -+|++..+++=|++|-++.   ..++-+++|++....++|++. |=++.|..|+||
T Consensus       372 ~m~le~a~~ilD~FF~eG~---rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y  424 (671)
T KOG4347|consen  372 LMPLEYAVRILDCFFYEGP---RVLFQIALAILKQNAERILSATDDGEAMMVLGNY  424 (671)
T ss_pred             HcchHHHHHHHhhhhhccc---HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHH
Confidence            3688999999999999986   788889999999999999975 468899999887

>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised

Probab=81.25  E-value=4.7  Score=25.80  Aligned_cols=39  Identities=31%  Similarity=0.376  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHhCCCCCCH---HHHHHHHHh
Q 035017           33 VMLILIRRRLLAGDITSNLKLLQNYPPTNI---SHLLYVANK   71 (76)
Q Consensus        33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv---~~ll~~A~~   71 (76)
                      -.+..+|+.|+++|-+..=.++..||..|.   ..+++.|.+
T Consensus        96 h~lE~wRdrLi~~~~~al~e~~~~~p~~D~Q~LRqLiR~a~k  137 (157)
T PF04751_consen   96 HRLERWRDRLIADDDSALTEFLAEYPDADRQQLRQLIRNARK  137 (157)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHHHHHSTTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHCChhhHHHHHHHHHHHHH
Confidence            368899999999888888888999999874   445555554

The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2qfz_A	345	Crystal Structure Of Human Tbc1 Domain Family Membe		4e-04

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 1   MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPP 59
           M+E      + +WDT  S+PDG     L VC   L+  R+ +L   D    L  LQN P 
Sbjct: 255 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT 314
Query: 60  T-----NISHLLYVANKLR 73
                 +IS LL  A +L+
Sbjct: 315 AHWDDEDISLLLAEAYRLK 333

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	1e-14
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	3e-10
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	1e-07

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score = 65.4 bits (159), Expect = 1e-14
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 1   MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPP 59
           M+E      + +WDT  S+PDG     L VC   L+  R+ +L   D    L  LQN P 
Sbjct: 255 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT 314

Query: 60  TN-----ISHLLYVANKLRNL 75
            +     IS LL  A +L+  
Sbjct: 315 AHWDDEDISLLLAEAYRLKFA 335

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 1   MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT 60
           M+EF     + +WDT LS+      +         I          + S +   +++   
Sbjct: 242 MREFQMGTVIRMWDTYLSETSQEVTSSY-SMSSNDIKPPVTPTEPRVASFVTPTKDFQSP 300

Query: 61  NISHLLYVANK 71
             +      N 
Sbjct: 301 TTALSNMTPNN 311

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 1   MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLA-GDITSNLKLLQNYPP 59
                 +    +WD ++S   G  +  + V   +L+  + +++A        K L+N P 
Sbjct: 213 AGCLPESSLQRVWDKVVS---GSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ 269

Query: 60  TNISHLLYVANKL 72
            +   ++  A  L
Sbjct: 270 DSSDAIVSKAIDL 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.74
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.71
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.7
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.64
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.58
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.52
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.52
2p0t_A	176	UPF0307 protein pspto_4464; APC85033, conserved pu	81.15

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.74  E-value=7.1e-18  Score=115.07  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=66.3

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCH-HHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDI-TSNLKLLQNYPPTNISHLLYVANKLRN   74 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df-~~~l~~Lq~~p~~dv~~ll~~A~~l~~   74 (76)
                      +||||+++++|+||++|+++.   +++.++|+|+|..+|++|++.+| ++++++||++|+.|++.+++.|..+++
T Consensus       213 ~~~~p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~di~~ll~~A~~l~~  284 (294)
T 3qwl_A          213 AGCLPESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWH  284 (294)
T ss_dssp             TTTSCHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence            589999999999999999654   89999999999999999999997 788999999999999999999999864

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.71  E-value=6.3e-18  Score=118.64  Aligned_cols=74  Identities=31%  Similarity=0.499  Sum_probs=66.7

Q ss_pred             CcccchhcHHHHHHHHhcCC---------------------------------------------------C--------
Q 035017            1 MQEFNFADNLHIWDTLLSDP---------------------------------------------------D--------   21 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~---------------------------------------------------~--------   21 (76)
                      +||||+++++|+||++|+++                                                   .        
T Consensus       242 ~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (396)
T 1fkm_A          242 MREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQ  321 (396)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccc
Confidence            48999999999999999976                                                   1        


Q ss_pred             -CCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017           22 -GPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT-----NISHLLYVANKLRN   74 (76)
Q Consensus        22 -~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~   74 (76)
                       +...++.|+|+|||..+|++|++.||+++|++||++|+.     |++.+++.|..++.
T Consensus       322 ~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~  380 (396)
T 1fkm_A          322 SSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS  380 (396)
T ss_dssp             -CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence             124799999999999999999999999999999999984     79999999998774

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.70  E-value=4e-17  Score=112.15  Aligned_cols=74  Identities=36%  Similarity=0.596  Sum_probs=67.6

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPPT-----NISHLLYVANKLRN   74 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll-~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~   74 (76)
                      +||||+++++|+||++|+++.+...|+.|+|+|+|...|++|+ ..||++++++||++|+.     |++.+++.|..++.
T Consensus       255 ~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~  334 (345)
T 2qfz_A          255 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKF  334 (345)
T ss_dssp             TTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHH
Confidence            5899999999999999999874456999999999999999999 48999999999999986     69999999999875

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.64  E-value=3.4e-16  Score=107.48  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=66.5

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC-CCHHHHHHHHHhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP-TNISHLLYVANKLR   73 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~-~dv~~ll~~A~~l~   73 (76)
                      +++||+++++|+||++|+++.   .++.++|+|++...|++|++.||++++++||++|. .|++.+++.|..++
T Consensus       239 ~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~~~a~~l~  309 (334)
T 2qq8_A          239 SKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFASIATIQ  309 (334)
T ss_dssp             TTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred             cccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence            589999999999999999976   89999999999999999999999999999999998 69999999999875

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=99.58  E-value=5.3e-15  Score=99.81  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=65.2

Q ss_pred             Ccccc-hhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHhCCCC-CCHHHHHHHHHhhhh
Q 035017            1 MQEFN-FADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG--DITSNLKLLQNYPP-TNISHLLYVANKLRN   74 (76)
Q Consensus         1 ~rEf~-l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~--df~~~l~~Lq~~p~-~dv~~ll~~A~~l~~   74 (76)
                      +++++ +++++|+||++|+++.   .+++|+|+|++...|++|++.  |+++++.+|+++|. .|++.+++.|..+++
T Consensus       213 ~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~  287 (292)
T 4hl4_A          213 GHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV  287 (292)
T ss_dssp             TTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             hhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            47885 9999999999999986   799999999999999999985  79999999999995 899999999999874

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.52  E-value=7.5e-15  Score=99.58  Aligned_cols=70  Identities=24%  Similarity=0.371  Sum_probs=63.7

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHh-CCCC-----CCHHHHHHHHHhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQ-NYPP-----TNISHLLYVANKLR   73 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq-~~p~-----~dv~~ll~~A~~l~   73 (76)
                      +++||+++++|+||++|+++.   .++.++|+|++...|++|++.||++++++|+ ++|.     .|++.+++.|..++
T Consensus       200 ~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~  275 (310)
T 3hzj_A          200 TAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIK  275 (310)
T ss_dssp             TTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred             hccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhcC
Confidence            589999999999999999986   7899999999999999999999999999997 4563     38999999999885

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.52  E-value=2.3e-14  Score=97.85  Aligned_cols=70  Identities=10%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHhCCCC-C---CHHHHHHHHHhhh
Q 035017            1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG-DITSNLKLLQNYPP-T---NISHLLYVANKLR   73 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~-df~~~l~~Lq~~p~-~---dv~~ll~~A~~l~   73 (76)
                      +++||+++++|+||++|+++.   .++.++|+|++...|++|++. ||++++++|+++|+ .   |++.+++.|..++
T Consensus       234 ~~~lp~~~~lrlwD~~l~~g~---~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~  308 (331)
T 3qye_A          234 ASQFPLGFVARVFDMIFLQGT---EVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD  308 (331)
T ss_dssp             TTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred             hhhCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence            479999999999999999986   699999999999999999986 89999999999544 4   7999999998775

>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1

Probab=81.15  E-value=3.1  Score=26.29  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHhCCCCCC---HHHHHHHHHh
Q 035017           33 VMLILIRRRLLAGDITSNLKLLQNYPPTN---ISHLLYVANK   71 (76)
Q Consensus        33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~d---v~~ll~~A~~   71 (76)
                      -.+..+|+.|++++=+..=.++..||..|   +..+++.|.+
T Consensus       106 h~lE~wRdrLi~~gd~al~e~~~~~P~~DrQ~LRqLiR~A~k  147 (176)
T 2p0t_A          106 HNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQH  147 (176)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHH
Confidence            45889999999876556666788999987   5566766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	4e-09

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (113), Expect = 4e-09
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 4   FNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN-- 61
            N   N  + D+         E  + VC   LI    +L+  D    +  LQN P  +  
Sbjct: 110 SNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWT 169

Query: 62  ---ISHLLYVANKLRNL 75
              I  LL  A   ++L
Sbjct: 170 ETDIEMLLSEAFIWQSL 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.79
d2p0ta1	148	Uncharacterized protein PSPTO4464 {Pseudomonas syr	87.56

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=5.2e-20  Score=116.71  Aligned_cols=74  Identities=31%  Similarity=0.514  Sum_probs=66.9

Q ss_pred             CcccchhcHHHHHHHHhcCCC-----------------------------------------------------------
Q 035017            1 MQEFNFADNLHIWDTLLSDPD-----------------------------------------------------------   21 (76)
Q Consensus         1 ~rEf~l~~~~~lWD~l~a~~~-----------------------------------------------------------   21 (76)
                      +||||+++++|+||++|++++                                                           
T Consensus        47 ~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (188)
T d1fkma2          47 MREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQ  126 (188)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             hccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhhhccccccccccchhhhhhccccccccccccccchhhhhhccccccc
Confidence            489999999999999999632                                                           


Q ss_pred             -CCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017           22 -GPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT-----NISHLLYVANKLRN   74 (76)
Q Consensus        22 -~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~   74 (76)
                       +..+++.|+|+|+|...|++|+++||+++|++|||+|+.     |++.++++|+.+++
T Consensus       127 ~~~~~~~~~~c~A~L~~~r~~Ll~~df~~~l~~Lq~~P~~~~~~~di~~ll~~A~~~~~  185 (188)
T d1fkma2         127 SSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS  185 (188)
T ss_dssp             -CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHH
Confidence             235889999999999999999999999999999999984     89999999988875

>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: All alpha proteins
fold: PSPTO4464-like
superfamily: PSPTO4464-like
family: PSPTO4464-like
domain: Uncharacterized protein PSPTO4464
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.56  E-value=0.62  Score=27.09  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHhCCCCCC---HHHHHHHHHh
Q 035017           33 VMLILIRRRLLAGDITSNLKLLQNYPPTN---ISHLLYVANK   71 (76)
Q Consensus        33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~d---v~~ll~~A~~   71 (76)
                      .-+..+|+.|+++|-+..=.++..||..|   +..+++.|.+
T Consensus        82 h~lE~wRdrLi~~~~~al~e~~~~~P~~DrQ~LRqLiR~A~k  123 (148)
T d2p0ta1          82 HNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQH  123 (148)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHCcchHHHHHHHHHHHHHH
Confidence            46889999999988777778889999987   4556666654