Citrus Sinensis ID: 035039

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MEIIESTSNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccccccccEEEEccccEEEccccccHHHHHcccccEEEHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccccccEEEEEccccEEEcccccHHHHHHHcccccEHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meiiestsnssktsipalsspsklsskrllfdrrygwvfdewkdpseealaggrgmfCIVPLAKACLKTASESVS
Flexible Loop (DISEMBL)
meiiestsnssktsipalsspsklsskrlLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS
Low Complexity Region (SEG)
MEIIESTSNSSKTSIPAlsspsklsskrllFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS
Disordered region (IsUnstruct)
***************************RLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLK*******
Disordered Region (DISOPRED)
****************************LLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASE***
Disordered Region (DISEMBL)
************************SSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACL********
Disordered Region (DISPRO)
*************************SKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASES**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIIESTSNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
224145048	137	predicted protein [Populus trichocarpa]	0.88	0.481	0.704	2e-19
225460067	145	PREDICTED: uncharacterized protein LOC10	0.64	0.331	0.833	9e-19
297740940	143	unnamed protein product [Vitis vinifera]	0.64	0.335	0.833	9e-19
297821311	93	predicted protein [Arabidopsis lyrata su	0.76	0.612	0.719	3e-18
18399621	93	uncharacterized protein [Arabidopsis tha	0.76	0.612	0.719	5e-18
255569088	77	conserved hypothetical protein [Ricinus	0.706	0.688	0.754	2e-16
351724181	133	uncharacterized protein LOC100306013 [Gl	0.853	0.481	0.617	4e-16
116781400	117	unknown [Picea sitchensis] gi|148906634|	0.533	0.341	0.75	2e-12
357111024	136	PREDICTED: uncharacterized protein LOC10	0.666	0.367	0.58	3e-12
218199405	136	hypothetical protein OsI_25585 [Oryza sa	0.613	0.338	0.608	3e-12

>gi|224145048|ref|XP_002325507.1| predicted protein [Populus trichocarpa] gi|222862382|gb|EEE99888.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 55/71 (77%), Gaps = 5/71 (7%)

Query: 4  IESTSNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLA 63
          +ES SN  K  I  L    K  S RLLFDRRYGWVFDEWKDPSEEAL+GGRGMFCI+PLA
Sbjct: 1  MESASN--KIRIATLP---KRHSHRLLFDRRYGWVFDEWKDPSEEALSGGRGMFCILPLA 55

Query: 64 KACLKTASESV 74
          KA L TAS+S+
Sbjct: 56 KAFLTTASQSI 66

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460067|ref|XP_002274416.1| PREDICTED: uncharacterized protein LOC100248156 [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 46/48 (95%)

Query: 28 RLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
          RLLFDRRYGWVFDEWKDPS+EAL+GGRGMFCI+PLA A LKTAS+S++
Sbjct: 24 RLLFDRRYGWVFDEWKDPSQEALSGGRGMFCILPLATALLKTASQSIN 71

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740940|emb|CBI31252.3| unnamed protein product [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 46/48 (95%)

Query: 28 RLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
          RLLFDRRYGWVFDEWKDPS+EAL+GGRGMFCI+PLA A LKTAS+S++
Sbjct: 22 RLLFDRRYGWVFDEWKDPSQEALSGGRGMFCILPLATALLKTASQSIN 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821311|ref|XP_002878538.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324377|gb|EFH54797.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query: 19 SSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
          ++ S  SS+RLLFDRRYGWV DEWKDPSEEALAGGRGMFC+VPL K   +TAS+S++
Sbjct: 5  ATASHRSSRRLLFDRRYGWVVDEWKDPSEEALAGGRGMFCVVPLTKTLFQTASQSIN 61

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399621|ref|NP_565502.1| uncharacterized protein [Arabidopsis thaliana] gi|20197723|gb|AAM15225.1| Expressed protein [Arabidopsis thaliana] gi|21554081|gb|AAM63162.1| unknown [Arabidopsis thaliana] gi|30725282|gb|AAP37663.1| At2g21195 [Arabidopsis thaliana] gi|110743855|dbj|BAE99762.1| hypothetical protein [Arabidopsis thaliana] gi|330252042|gb|AEC07136.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query: 19 SSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
          ++ S  SS+RLLFDRRYGWV DEWKDPSEEALAGGRGMFC+VPL K   +TAS+S++
Sbjct: 5  ATASNRSSRRLLFDRRYGWVVDEWKDPSEEALAGGRGMFCVVPLTKTLFQTASQSMN 61

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569088|ref|XP_002525513.1| conserved hypothetical protein [Ricinus communis] gi|223535192|gb|EEF36871.1| conserved hypothetical protein [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%)

Query: 23 KLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
          K  SKRLL+DRRYGWV DEWK+PSEEALAGGRGMFCI+PL+KA L +AS S +
Sbjct: 22 KRPSKRLLYDRRYGWVVDEWKEPSEEALAGGRGMFCILPLSKALLNSASHSAA 74

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724181|ref|NP_001236281.1| uncharacterized protein LOC100306013 [Glycine max] gi|255627277|gb|ACU13983.1| unknown [Glycine max]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 4/68 (5%)

Query: 8  SNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACL 67
          S SSK ++P     S+  SK+LLFDR YGWV DEWKDP+ EAL GGRGMFCI+PLAKA +
Sbjct: 3  STSSKVNVPN----SRQLSKQLLFDRCYGWVIDEWKDPAGEALDGGRGMFCILPLAKALV 58

Query: 68 KTASESVS 75
            AS+S++
Sbjct: 59 HKASQSIN 66

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116781400|gb|ABK22084.1| unknown [Picea sitchensis] gi|148906634|gb|ABR16468.1| unknown [Picea sitchensis]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 29 LLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLK 68
          L+FDRRYGWV+DEW+DP E AL GGRGMFCIVPL KA + 
Sbjct: 21 LIFDRRYGWVYDEWRDPGEVALVGGRGMFCIVPLTKATVN 60

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111024|ref|XP_003557315.1| PREDICTED: uncharacterized protein LOC100834430 [Brachypodium distachyon]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query: 26 SKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
           +RL+FDRRYGW+FDEW DP  +AL+GGRG FCI+P+A+  +  A+ SV+
Sbjct: 20 QRRLVFDRRYGWIFDEWTDPGVDALSGGRGTFCILPMAQLLMNAAASSVN 69

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199405|gb|EEC81832.1| hypothetical protein OsI_25585 [Oryza sativa Indica Group]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 39/46 (84%)

Query: 30 LFDRRYGWVFDEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
          +FDRRYGW+FDEW DP++ ALAGGRGMFC++P+A++ +  A  SV+
Sbjct: 25 VFDRRYGWIFDEWTDPADAALAGGRGMFCVLPMARSLVDVAVSSVT 70

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:505006263	100	AT2G21195 "AT2G21195" [Arabido	0.48	0.36	0.805	1e-11

TAIR|locus:505006263 AT2G21195 "AT2G21195" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query:    40 DEWKDPSEEALAGGRGMFCIVPLAKACLKTASESVS 75
             DEWKDPSEEALAGGRGMFC+VPL K   +TAS+SVS
Sbjct:    10 DEWKDPSEEALAGGRGMFCVVPLTKTLFQTASQSVS 45


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       75        62   0.00091  102 3  11 23  0.42    28
                                                     29  0.41    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.83u 0.13s 5.96t   Elapsed:  00:00:01
  Total cpu time:  5.83u 0.13s 5.96t   Elapsed:  00:00:01
  Start:  Fri May 10 05:09:46 2013   End:  Fri May 10 05:09:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00