Citrus Sinensis ID: 035132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MNKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Secondary Structure (PSIPRED)
cccccccEEccEEEEEEccEEHHccccEEEEEHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEccEEEEEEHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnksvdstlgaGAYILVGTVarehsgpaltlsfpyswnsfcFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Flexible Loop (DISEMBL)
mnksvdstlgAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Low Complexity Region (SEG)
MNKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Disordered region (IsUnstruct)
********LGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR**
Disordered Region (DISOPRED)
*NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Disordered Region (DISEMBL)
MNKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Disordered Region (DISPRO)
****VDSTLGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRRC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q8GYB4	609	Cationic amino acid trans	yes	no	0.416	0.049	0.833	5e-07
Q9ASS7	635	Cationic amino acid trans	no	no	0.416	0.047	0.766	3e-06
Q8W4K3	600	Cationic amino acid trans	no	no	0.416	0.05	0.733	4e-06
Q09143	622	High affinity cationic am	yes	no	0.402	0.046	0.655	0.0001
P30823	624	High affinity cationic am	yes	no	0.402	0.046	0.655	0.0001
P30825	629	High affinity cationic am	yes	no	0.402	0.046	0.655	0.0002

>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 26/30 (86%)

Query: 4  SVDSTLGAGAYILVGTVAREHSGPALTLSF 33
           V ST+GAG YILVGTVAREHSGPAL LSF
Sbjct: 42 GVGSTIGAGVYILVGTVAREHSGPALALSF 71

Permease involved in the transport of the cationic neutral or acidic amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/30 (76%), Positives = 26/30 (86%)

Query: 4  SVDSTLGAGAYILVGTVAREHSGPALTLSF 33
           V +T+GAG YILVGTVAREHSGP+L LSF
Sbjct: 53 GVGATIGAGVYILVGTVAREHSGPSLALSF 82

Permease involved in the transport of the cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 26/30 (86%)

Query: 4  SVDSTLGAGAYILVGTVAREHSGPALTLSF 33
           V +T+GAG YILVGTVAREH+GPAL +SF
Sbjct: 37 GVGTTIGAGVYILVGTVAREHTGPALAVSF 66

Permease involved in the transport of the cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF 33
          V STLGAG Y+L G VARE++GPA+ +SF
Sbjct: 42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Mus musculus (taxid: 10090)

>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF 33
          V STLGAG Y+L G VARE++GPA+ +SF
Sbjct: 42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Rattus norvegicus (taxid: 10116)

>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF 33
          V STLGAG Y+L G VARE++GPA+ +SF
Sbjct: 42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
225439247	639	PREDICTED: high affinity cationic amino	0.583	0.065	0.595	8e-06
296085920	619	unnamed protein product [Vitis vinifera]	0.569	0.066	0.608	8e-06
414869027	624	TPA: hypothetical protein ZEAMMB73_21705	0.569	0.065	0.608	9e-06
392937547	650	cationic amino acid transporter 2 [Solan	0.569	0.063	0.608	9e-06
357155746	635	PREDICTED: high affinity cationic amino	0.583	0.066	0.595	9e-06
326529443	633	predicted protein [Hordeum vulgare subsp	0.569	0.064	0.608	1e-05
403224705	595	putative cationic amino acid transporter	0.402	0.048	0.862	1e-05
77556627	505	amino acid permease family protein, puta	0.569	0.081	0.586	1e-05
77556626	563	amino acid permease family protein, puta	0.569	0.072	0.586	1e-05
115489644	621	Os12g0623500 [Oryza sativa Japonica Grou	0.402	0.046	0.827	2e-05

>gi|225439247|ref|XP_002271330.1| PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera]

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 5/47 (10%)

Query: 4  SVDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
           V ST+GAG YILVGTVAREHSGPALT+SF       + ++FC+  L
Sbjct: 52 GVGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAEL 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085920|emb|CBI31244.3| unnamed protein product [Vitis vinifera]

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 5/46 (10%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
          V ST+GAG YILVGTVAREHSGPALT+SF       + ++FC+  L
Sbjct: 33 VGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAEL 78

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869027|tpg|DAA47584.1| TPA: hypothetical protein ZEAMMB73_217051 [Zea mays]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 5/46 (10%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
          V ST+GAG Y+LVGTVAREHSGPALTLSF       + ++FC+  L
Sbjct: 42 VGSTIGAGVYVLVGTVAREHSGPALTLSFLIAGIAAALSAFCYAEL 87

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392937547|gb|AFM93785.1| cationic amino acid transporter 2 [Solanum lycopersicum]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 5/46 (10%)

Query: 5   VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
           V ST+GAG YILVGTVAREHSGPALT+SF       + ++FC+  L
Sbjct: 64  VGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAEL 109

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357155746|ref|XP_003577224.1| PREDICTED: high affinity cationic amino acid transporter 1-like [Brachypodium distachyon]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 5/47 (10%)

Query: 4  SVDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
           V ST+GAG Y+LVGTVAREHSGPALTLSF       + ++FC+  L
Sbjct: 51 GVGSTVGAGVYVLVGTVAREHSGPALTLSFLIAGIAAALSAFCYAEL 97

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326529443|dbj|BAK04668.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326533870|dbj|BAJ93708.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 5/46 (10%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
          V ST+GAG Y+LVGTVAREHSGPALTLSF       + ++FC+  L
Sbjct: 50 VGSTVGAGVYVLVGTVAREHSGPALTLSFLIAGIAAALSAFCYAEL 95

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403224705|emb|CCJ47142.1| putative cationic amino acid transporter, partial [Hordeum vulgare subsp. vulgare]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF 33
          V ST+GAG Y+LVGTVAREHSGPALTLSF
Sbjct: 12 VGSTVGAGVYVLVGTVAREHSGPALTLSF 40

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556627|gb|ABA99423.1| amino acid permease family protein, putative, expressed [Oryza sativa Japonica Group]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 5/46 (10%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
          V ST+GAG Y+LVGTVAREH+GPALTLSF       + ++FC+  L
Sbjct: 45 VGSTIGAGVYVLVGTVAREHAGPALTLSFLIAGVAAALSAFCYAEL 90

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556626|gb|ABA99422.1| amino acid permease family protein, putative, expressed [Oryza sativa Japonica Group]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 5/46 (10%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
          V ST+GAG Y+LVGTVAREH+GPALTLSF       + ++FC+  L
Sbjct: 45 VGSTIGAGVYVLVGTVAREHAGPALTLSFLIAGVAAALSAFCYAEL 90

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489644|ref|NP_001067309.1| Os12g0623500 [Oryza sativa Japonica Group] gi|77556625|gb|ABA99421.1| amino acid permease family protein, putative, expressed [Oryza sativa Japonica Group] gi|113649816|dbj|BAF30328.1| Os12g0623500 [Oryza sativa Japonica Group] gi|215694025|dbj|BAG89224.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765383|dbj|BAG87080.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 27/29 (93%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSF 33
          V ST+GAG Y+LVGTVAREH+GPALTLSF
Sbjct: 45 VGSTIGAGVYVLVGTVAREHAGPALTLSF 73

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2167462	609	CAT3 "cationic amino acid tran	0.569	0.067	0.608	4.3e-07
TAIR|locus:2196245	635	CAT2 "cationic amino acid tran	0.402	0.045	0.793	2.6e-06
UNIPROTKB|Q5JR49	121	SLC7A1 "High affinity cationic	0.402	0.239	0.655	9e-06
ZFIN|ZDB-GENE-041114-206	644	slc7a3a "solute carrier family	0.402	0.045	0.655	1.9e-05
UNIPROTKB|F1RSU0	429	SLC7A1 "Uncharacterized protei	0.402	0.067	0.689	7.8e-05
ZFIN|ZDB-GENE-091116-69	652	slc7a1 "solute carrier family	0.402	0.044	0.689	8.4e-05
ZFIN|ZDB-GENE-040426-2105	653	zgc:63694 "zgc:63694" [Danio r	0.402	0.044	0.689	8.4e-05
UNIPROTKB|G3MV65	622	Slc7a1 "Solute carrier family	0.402	0.046	0.655	0.00013
UNIPROTKB|G3MV66	622	Slc7a1 "Solute carrier family	0.402	0.046	0.655	0.00013
MGI|MGI:88117	622	Slc7a1 "solute carrier family	0.402	0.046	0.655	0.00013

TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 28/46 (60%), Positives = 33/46 (71%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF-----PYSWNSFCFFSL 45
             V ST+GAG YILVGTVAREHSGPAL LSF       + ++FC+  L
Sbjct:    43 VGSTIGAGVYILVGTVAREHSGPALALSFLIAGISAALSAFCYAEL 88

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IGI

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2196245 CAT2 "cationic amino acid transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V +T+GAG YILVGTVAREHSGP+L LSF
Sbjct:    54 VGATIGAGVYILVGTVAREHSGPSLALSF 82

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|Q5JR49 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE++GPA+ +SF
Sbjct:    42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

GO:0016020 "membrane" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-041114-206 slc7a3a "solute carrier family 7 (cationic amino acid transporter, y+ system), member 3a" [Danio rerio (taxid:7955)]

 Score = 97 (39.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE +GPA+ L F
Sbjct:    41 VGSTLGAGVYVLAGEVAREKAGPAIVLCF 69

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RSU0 SLC7A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 103 (41.3 bits), Expect = 7.8e-05, P = 7.8e-05
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE +GPA+ LSF
Sbjct:    42 VGSTLGAGVYVLAGAVAREDAGPAIVLSF 70

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-091116-69 slc7a1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 1" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE++GPA+ LSF
Sbjct:    42 VGSTLGAGVYVLAGAVARENAGPAIVLSF 70

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2105 zgc:63694 "zgc:63694" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE++GPA+ LSF
Sbjct:    42 VGSTLGAGVYVLAGAVARENAGPAIVLSF 70

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3MV65 Slc7a1 "Solute carrier family 7 member 1" [Mus musculus musculus (taxid:39442)]

 Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE++GPA+ +SF
Sbjct:    42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

GO:0015181 "arginine transmembrane transporter activity" evidence=IDA

GO:0015809 "arginine transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IC

UNIPROTKB|G3MV66 Slc7a1 "Solute carrier family 7 member 1" [Mus musculus molossinus (taxid:57486)]

 Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE++GPA+ +SF
Sbjct:    42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

GO:0015181 "arginine transmembrane transporter activity" evidence=IDA

GO:0015809 "arginine transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IC

MGI|MGI:88117 Slc7a1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 1" [Mus musculus (taxid:10090)]

 Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query:     5 VDSTLGAGAYILVGTVAREHSGPALTLSF 33
             V STLGAG Y+L G VARE++GPA+ +SF
Sbjct:    42 VGSTLGAGVYVLAGAVARENAGPAIVISF 70

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=ISO;IDA

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0015809 "arginine transport" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IC

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYB4	CAAT3_ARATH	No assigned EC number	0.8333	0.4166	0.0492	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	7e-07

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 5  VDSTLGAGAYILVGTVAREHSGPALTLSFPYS 36
          + ST+GAG Y+L G VAR  SGPA+ LSF  S
Sbjct: 40 IGSTIGAGIYVLTGEVARNDSGPAIVLSFLIS 71

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.56
PRK10836	489	lysine transporter; Provisional	99.54
PRK11021	410	putative transporter; Provisional	99.53
PRK10249	458	phenylalanine transporter; Provisional	99.5
PRK15049	499	L-asparagine permease; Provisional	99.5
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.48
PRK11387	471	S-methylmethionine transporter; Provisional	99.46
PRK10746	461	putative transport protein YifK; Provisional	99.46
PRK10238	456	aromatic amino acid transporter; Provisional	99.44
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.44
PRK10580	457	proY putative proline-specific permease; Provision	99.42
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.41
KOG1286	554	consensus Amino acid transporters [Amino acid tran	99.37
PRK10655	438	potE putrescine transporter; Provisional	99.37
PRK10644	445	arginine:agmatin antiporter; Provisional	99.36
KOG1287	479	consensus Amino acid transporters [Amino acid tran	99.3
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.3
TIGR00913	478	2A0310 amino acid permease (yeast).	99.25
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.25
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.24
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.21
TIGR00911	501	2A0308 L-type amino acid transporter.	99.21
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.16
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.11
TIGR00909	429	2A0306 amino acid transporter.	99.05
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.99
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.97
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	98.94
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.91
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.82
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.76
TIGR00930	953	2a30 K-Cl cotransporter.	98.7
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.44
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.44
PRK15238	496	inner membrane transporter YjeM; Provisional	98.42
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.23
PHA02764	399	hypothetical protein; Provisional	97.97
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.19
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.14
KOG1289	550	consensus Amino acid transporters [Amino acid tran	96.73
PRK09664	415	tryptophan permease TnaB; Provisional	96.37
TIGR00814	397	stp serine transporter. The HAAAP family includes	96.37
PRK10483	414	tryptophan permease; Provisional	96.31
PRK15132	403	tyrosine transporter TyrP; Provisional	96.07
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	95.95
PRK13629	443	threonine/serine transporter TdcC; Provisional	94.6
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	93.04
PF03845	320	Spore_permease: Spore germination protein; InterPr	92.37
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	84.25

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.56  E-value=6e-15  Score=110.66  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|+|++||..++ .+||..+++|+++     +.++||+||+ ++ +|++||.|+|++++.|+-|
T Consensus         1 ~~~ig~~IGsGif~~~g~~~~-~aG~~~ll~~~i~gi~~~~~al~~aEL~-s~-~P~~Gg~y~y~~~~~G~~~   70 (446)
T PRK10197          1 MLSIAGVIGASLFVGSSVAIA-EAGPAVLLAYLFAGLLVVMIMRMLAEMA-VA-TPDTGSFSTYADKAIGRWA   70 (446)
T ss_pred             CeeecchhHhHHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHcChHH
Confidence            589999999999999999885 6899999999998     8899999999 98 9999999999999999754

>PRK10836 lysine transporter; Provisional

Probab=99.54  E-value=3.8e-15  Score=112.65  Aligned_cols=65  Identities=12%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||++||.+++ .+||. ++++|+++     ++++||+||+ ++ +|++||.|.|+++|.++-|
T Consensus        24 ~l~vG~~IGsGif~~~g~~~~-~aGp~~~l~a~~i~g~~~~~~al~~aEL~-s~-~P~sGg~y~y~~~~~g~~~   94 (489)
T PRK10836         24 MIAIGGSIGTGLFVASGATIS-QAGPGGALLSYMLIGLMVYFLMTSLGELA-AY-MPVSGSFATYGQNYVEEGF   94 (489)
T ss_pred             HHHHhhhhhhhhhHhhhHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCCCHHHHHHHHcChHH
Confidence            578999999999999999986 68995 78899998     8999999999 98 9999999999999998765

>PRK11021 putative transporter; Provisional

Probab=99.53  E-value=4.4e-15  Score=109.47  Aligned_cols=65  Identities=14%  Similarity=0.045  Sum_probs=60.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++.+|+|||+|||++||.+++ .+||..+++|+++     +.++||+||+ ++ +|++||.|.|+++..|+.|
T Consensus         8 ~l~~g~~IGsGif~~~g~~~~-~aG~~~~~~~~i~~~~~~~~al~~aEl~-s~-~P~aGG~y~y~~~~~G~~~   77 (410)
T PRK11021          8 GLLSTSLLGTGVFAVPALAAL-VAGNNSLWAWPLLILLIFPIAIVFARLG-RH-FPHAGGPAHFVGMAFGPRL   77 (410)
T ss_pred             HHHHHHHHhhHHHHhHHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHhHHHHhCchh
Confidence            467899999999999999885 6899999999998     8999999999 98 9999999999999998865

>PRK10249 phenylalanine transporter; Provisional

Probab=99.50  E-value=2.7e-14  Score=107.49  Aligned_cols=65  Identities=11%  Similarity=0.114  Sum_probs=60.5

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|||++||..++ .+||+.+++|+++     +.++||+||+ ++ +|++||.|.|+++++|+-|
T Consensus        30 ~i~ig~~IGsGif~~~g~~~~-~aGp~~~l~~li~~~~~~~~~~~~aEl~-~~-~P~~Gg~~~y~~~~~g~~~   99 (458)
T PRK10249         30 LIALGGAIGTGLFLGIGPAIQ-MAGPAVLLGYGVAGIIAFLIMRQLGEMV-VE-EPVSGSFAHFAYKYWGPFA   99 (458)
T ss_pred             hhhhhcccchhHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhChHH
Confidence            678999999999999999885 6999999999998     9999999999 98 9999999999999999854

>PRK15049 L-asparagine permease; Provisional

Probab=99.50  E-value=2.3e-14  Score=109.51  Aligned_cols=65  Identities=17%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||++||.+++ .+||..+++|+++     +.++||+||+ ++ +|++||.|.|++++.|+-+
T Consensus        37 ~i~~G~~IGsGiF~~~g~~~~-~aGp~~il~~li~~i~~~~v~~slaELa-s~-~P~aGg~y~y~~~~~G~~~  106 (499)
T PRK15049         37 MIAIGGAIGTGLFLGAGARLQ-MAGPALALVYLICGLFSFFILRALGELV-LH-RPSSGSFVSYAREFLGEKA  106 (499)
T ss_pred             HHhhhccccchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhCcHh
Confidence            578999999999999999885 7999999999998     8899999999 98 9999999999999998754

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.48  E-value=1.4e-14  Score=112.44  Aligned_cols=66  Identities=35%  Similarity=0.616  Sum_probs=61.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|.|||+|||+++|.++.+.+||+++++|+++     +.++||+|++ ++ +|++||.|.|.++-.|+.|
T Consensus        37 ~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaEla-s~-~P~sGg~Y~y~~~~~G~~~  107 (557)
T TIGR00906        37 ALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFG-AR-VPKAGSAYLYSYVTVGELW  107 (557)
T ss_pred             HHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCcceeeHHHHhCcHH
Confidence            56889999999999999988778999999999998     8999999999 98 9999999999999988764

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.46  E-value=3.5e-14  Score=106.85  Aligned_cols=65  Identities=12%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||++||.+++ .+|| +++++|+++     ++++||+||+ ++ +|++||.|.|+++..|+-|
T Consensus        23 ~l~ig~~IG~Gif~~~g~~~~-~~G~~~~~l~~~i~~~~~~~~~~~~aELa-s~-~P~aGG~y~y~~~~~g~~~   93 (471)
T PRK11387         23 MLSLGGVIGTGLFFNTGYIIS-TTGAAGTLLAYLIGALVVYLVMQCLGELS-VA-MPETGAFHVYAARYLGPAT   93 (471)
T ss_pred             HHHHHhhhhhHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCCCHHHHHHHhcChHH
Confidence            578999999999999999886 6887 688899998     8999999999 98 9999999999999988764

>PRK10746 putative transport protein YifK; Provisional

Probab=99.46  E-value=5.2e-14  Score=106.36  Aligned_cols=65  Identities=11%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|+|+.||...+ .+||+++++|+++     ++++|++||+ ++ +|++||.++|+++++|+-|
T Consensus        19 ~i~ig~~IGtGlf~~~g~~l~-~aGp~~~l~~~i~g~~~~~v~~~~aEl~-~~-~P~sGg~~~y~~~~~g~~~   88 (461)
T PRK10746         19 LIALGGTIGVGLFMGAASTLK-WAGPSVLLAYIIAGLFVFFIMRSMGEML-FL-EPVTGSFAVYAHRYMSPFF   88 (461)
T ss_pred             HHHHHhhhhhhHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHhCcHH
Confidence            578999999999999999885 6999999999998     8899999999 88 9999999999999999865

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.44  E-value=7.3e-14  Score=105.08  Aligned_cols=65  Identities=9%  Similarity=0.113  Sum_probs=59.6

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|+|+.||.+++ .+||.++++|+++     ++++|++|++ ++ +|.+||.|.|++++.|+-+
T Consensus        21 ~i~ig~~IGsGif~~~g~~~~-~~Gp~~i~~~~i~gi~~~~v~~s~aEl~-s~-~P~aGg~y~~~~~~~g~~~   90 (456)
T PRK10238         21 LIALGGAIGTGLFLGSASVIQ-SAGPGIILGYAIAGFIAFLIMRQLGEMV-VE-EPVAGSFSHFAYKYWGSFA   90 (456)
T ss_pred             HHHhhccccchHHHhhHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHcCcHH
Confidence            578999999999999999986 6899999999998     8999999999 98 9999999999999988743

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.44  E-value=6.6e-14  Score=104.44  Aligned_cols=63  Identities=13%  Similarity=0.127  Sum_probs=55.8

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||.+|+.++ + +||..+++|+++     +.++||+||+ ++ +|++||.|+|+++ .|+-|
T Consensus        14 ~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~-s~-~P~~GG~y~y~~~-~g~~~   81 (435)
T PRK10435         14 GVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLA-TK-NPQQGGPIAYAGE-ISPAF   81 (435)
T ss_pred             HHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCChhHHHHH-HCcHH
Confidence            46789999999999999875 3 799999999998     8999999999 98 9999999999998 56543

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.42  E-value=1.1e-13  Score=103.71  Aligned_cols=65  Identities=9%  Similarity=0.055  Sum_probs=59.8

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|+|+.||..++ .+||..+++|+++     +.++||+||+ ++ +|++||.|.|+++.+|+.+
T Consensus        18 ~i~vg~~IG~Gif~~~g~~~~-~aG~~~~l~~~i~~i~~~~~a~~~aEl~-s~-~P~~Gg~y~y~~~~~G~~~   87 (457)
T PRK10580         18 FMALGSAIGTGLFYGSADAIK-MAGPSVLLAYIIGGVAAYIIMRALGEMS-VH-NPAASSFSRYAQENLGPLA   87 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCCCHHHHHHHHcCcHH
Confidence            467899999999999999875 7999999999998     8899999999 98 9999999999999998865

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.41  E-value=1.4e-13  Score=102.52  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|+|++||...+ .+||..+++|+++     +.++||+||+ ++ +|++||.|+|+++..|+-+
T Consensus        21 ~i~ig~~IGsGif~~~g~~~~-~~G~~~~i~~~i~~v~~~~~a~~~aEl~-s~-~P~~Gg~~~~~~~~~g~~~   90 (452)
T TIGR01773        21 MLSIAGVIGAGLFVGSGSAIA-SAGPAALLAYLLAGLLVVFIMRMLGEMA-VA-NPDTGSFSTYADDAIGRWA   90 (452)
T ss_pred             HHHHhhhhhchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHhCcHH
Confidence            467899999999999999886 6899988999998     9999999999 98 9999999999999998754

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.37  E-value=1.2e-13  Score=108.66  Aligned_cols=67  Identities=18%  Similarity=0.341  Sum_probs=62.5

Q ss_pred             CeEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhh
Q 035132            1 MNKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCW   69 (72)
Q Consensus         1 ~~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~   69 (72)
                      +++++|++||+|+|+.+|.++++.+||+++++|+++     ++++||+|++ ++ +|+ +|+++.|+.++++.-|
T Consensus        38 ~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~-~~-~P~~aGs~~~ya~~~i~e~~  110 (554)
T KOG1286|consen   38 QMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFA-VR-FPVSAGSFYTYAYRFVGESL  110 (554)
T ss_pred             EEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHh-ee-cccccccceeeeeeeeCcHH
Confidence            479999999999999999999988888999999998     9999999999 99 999 5999999999998876

>PRK10655 potE putrescine transporter; Provisional

Probab=99.37  E-value=3.3e-13  Score=100.07  Aligned_cols=64  Identities=13%  Similarity=0.033  Sum_probs=57.2

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||.+|+.+. + +||..+++|+++     +.++||+||+ ++ +|++||.|+|+++..|+-+
T Consensus        15 ~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~-~~-~P~~GG~y~y~~~~~G~~~   83 (438)
T PRK10655         15 ILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCG-MF-SRKSGGMGGYAEYAFGKSG   83 (438)
T ss_pred             HHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHh-hh-CCCCCchHHHHHHHcCcch
Confidence            46789999999999999865 3 799888999998     7899999999 98 9999999999999988754

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.36  E-value=4.4e-13  Score=99.94  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=55.8

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||.+|+.+++  .||..+++|+++     ..+++|+||+ ++ +|++||.|+|+++..|+-+
T Consensus        17 ~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~-s~-~P~aGG~y~~~~~~~g~~~   85 (445)
T PRK10644         17 LMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMS-SL-DPSPGGSYAYARRCFGPFL   85 (445)
T ss_pred             HHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCChhHHHHHHcCchH
Confidence            467899999999999998764  366777889886     8899999999 98 9999999999999887653

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.30  E-value=3.7e-12  Score=99.51  Aligned_cols=66  Identities=15%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             CeEeecceecchhhhhhHHHHHhccch-HHHH-HHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            1 MNKSVDSTLGAGAYILVGTVAREHSGP-ALTL-SFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         1 ~~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~l-a~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      +.+.+|.|||+|||++|..+.+ .+|+ +.-+ -|++.     .+++||+||+ ++ +|++||+|.|+....|+-|
T Consensus        20 v~livg~iIGsGIFvsp~~Vl~-~~gsvg~sL~iWv~~gi~s~~galcyaELG-T~-ipksGgd~ayi~~afg~~~   92 (479)
T KOG1287|consen   20 VSLIVGNIIGSGIFVSPKGVLA-NTGSVGLSLIIWVFCGIISIIGALCYAELG-TS-IPKSGGDYAYISEAFGPFP   92 (479)
T ss_pred             eeEEEEeeEecccccCcHHHHH-cCCchhHHHHHHHHHHHHHHHHHHHHHHHh-cc-ccCCCcchhhHHHHhccch
Confidence            3578999999999999999986 5665 2222 23333     9999999999 88 9999999999999887654

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.30  E-value=1.3e-12  Score=98.22  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCC-CcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSL-AICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~-Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+|||+|||.+|+.+++ .+||. .+++|+++     +.++||+||+ ++ +|++ ||.|+|+++..|+-+
T Consensus        10 ~l~vg~~IGsGif~~~~~~~~-~ag~~~~l~~w~i~~~~~~~~al~~aeL~-s~-~P~~gGG~y~y~~~~fG~~~   81 (468)
T TIGR03810        10 ALVVGSMIGSGIFSLPSDMAA-GAAAGAVLIGWVITGVGMLALAFSFQNLA-NK-KPELDGGVYSYAKAGFGPFM   81 (468)
T ss_pred             HHHHHhHHhhHHHHhHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCCChhhhHHhHcCcHH
Confidence            467899999999999999885 68885 67789888     8899999999 98 9997 599999999888743

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.25  E-value=5e-12  Score=94.70  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCC-CcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSL-AICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~-Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|||.+++..++ .+||. .+++|+++     +.++||+||+ ++ +|++ |+.++|++++.|+.|
T Consensus        11 ~l~vg~~IGsGif~~~~~~~~-~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~-s~-~P~~gG~~~~~~~~~~g~~~   82 (478)
T TIGR00913        11 MIALGGTIGTGLLVGSGTALA-TGGPAGLLIGYAIMGSIIYCVMQSLGEMA-TF-YPVVSGSFATYASRFVDPAF   82 (478)
T ss_pred             HHHHhccccchhhhcchhHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCCHHHHHHHHcCcHH
Confidence            467899999999999999986 68984 68899988     8999999999 98 9954 567789999998765

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.25  E-value=3.3e-12  Score=96.25  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|||..|+.+++ .+||. .+++|+++     +.+++|+|++ ++ +|+ +||.|+|+++-.|+-+
T Consensus        16 ~l~ig~vIGsGif~~~~~~~~-~~g~~~~~~~wli~~~~~~~~al~~aEl~-s~-~P~~sGG~y~y~~~~~G~~~   87 (473)
T TIGR00905        16 ALVIGSMIGSGIFSLPQNLAS-VAGPGAVIIGWIITGVGMLALAFVFAILA-TK-KPELDGGIYAYAREGFGPYI   87 (473)
T ss_pred             HHHHHHHHhHHHHHhHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCCChhhhHHhHccccc
Confidence            467899999999999999875 68885 67889998     8899999999 98 999 9999999999888754

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.24  E-value=2.9e-12  Score=95.36  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|.+||+|||.+++.++++..+| ..+++|+++     ..++||+||+ ++ +|++||.|.|+++..|+.+
T Consensus        17 ~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~-s~-~P~~GG~y~y~~~~~g~~~   88 (445)
T PRK11357         17 AIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELS-TA-YPENGADYVYLKNAGSRPL   88 (445)
T ss_pred             HHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCCceeeHHHhcCChh
Confidence            46788999999999999987643334 367788887     8999999999 98 9999999999999888754

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.21  E-value=9.2e-12  Score=93.89  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=57.9

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMC   68 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~   68 (72)
                      ++++|++||+|+|+.||..++ .+||+.+++|+++     +.++|++|++ +. .|+.|+.++|+++..|+-
T Consensus        29 ~i~vG~~IGsGif~~~g~~~~-~aGp~~i~~~~i~~i~~~~~~~s~aEl~-s~-~~~~~~~~~ya~~~~g~~   97 (469)
T PRK11049         29 LIAIGGAIGTGLFMGSGKTIS-LAGPSIIFVYMIIGFMLFFVMRAMGELL-LS-NLEYKSFSDFASDLLGPW   97 (469)
T ss_pred             HHHHhhHHHhHHHHHhhHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCcHHHHHHHHhCcH
Confidence            467999999999999999985 6999988899887     7899999999 87 999999999999998874

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.21  E-value=1.4e-11  Score=93.26  Aligned_cols=65  Identities=9%  Similarity=0.130  Sum_probs=55.6

Q ss_pred             eEeecceecchhhhhhHHHHHhccchH--HHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPA--LTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~--~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|++||+|||.+|+.+++ .+||.  .+++|+++     ..++||+||+ ++ +|++||.|+|+++..|+-+
T Consensus        51 ~l~vg~iiGsGif~~~~~~~~-~~G~~g~~~~~~ii~~i~~~~~al~~aELa-s~-~P~sGG~y~~~~~~~g~~~  122 (501)
T TIGR00911        51 GIIVGTIIGSGIFVSPKGVLK-NAGSVGLALIMWAVCGIFSIVGALVYAELG-TT-IPKSGGEYNYILEVFGPLL  122 (501)
T ss_pred             HhheeceEEeeEeecHHHHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCchhhhHHhHhCCHH
Confidence            567899999999999999886 57763  34677776     8899999999 98 9999999999999988754

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.16  E-value=2e-11  Score=95.11  Aligned_cols=65  Identities=11%  Similarity=0.164  Sum_probs=60.4

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+.||+|.|+.+|..++ .+||+++++|+++     +++.+.+||. .. .|++|++.+|+++|+|..+
T Consensus        22 lIAiGGaIGtGLFlGSg~~I~-~AGPSvlLaY~I~G~~~f~iMRaLGEm~-~~-~p~~gSF~~~a~~~lG~~A   91 (462)
T COG1113          22 LIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFLIMRALGEML-VA-NPVSGSFSDYARKYLGPWA   91 (462)
T ss_pred             HHHHhhhhhhhhhcccchhhh-hhCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCcHHHHHHHHhcchH
Confidence            578999999999999999995 7999999999999     9999999999 76 9999999999999998754

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.11  E-value=3.3e-11  Score=95.38  Aligned_cols=65  Identities=12%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      |+++|+.||+|.|+.+|...+ .+|| +++++|++.     +++.|.+||+ +. +|.+|++..|+++|++..|
T Consensus        53 MIAiGG~IGTGLfvgsG~~l~-~aGP~g~li~y~i~G~~vy~vm~sLGEma-~~-~P~sGsF~~ya~rfvdpa~  123 (541)
T COG0833          53 MIAIGGAIGTGLFVGSGKALS-QAGPAGLLIAYLIIGIMVYFVMQSLGELA-VF-YPVSGSFSTYATRFVDPAF  123 (541)
T ss_pred             HHHhccccccceeeecchhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCchhhhhhhhcCchH
Confidence            688999999999999999986 6999 677789887     8999999999 88 9999999999999998775

>TIGR00909 2A0306 amino acid transporter

Probab=99.05  E-value=7.8e-11  Score=86.74  Aligned_cols=65  Identities=17%  Similarity=0.280  Sum_probs=57.7

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++.++.+||+|+|.+|+.+.. .+||..+++|+++     ..+++|+|++ ++ +|++||.|+|.++..||-+
T Consensus        12 ~~~i~~~ig~gi~~~~~~~~~-~~G~~~~l~~li~~~~~~~~a~~~~el~-~~-~p~~Gg~y~~~~~~~G~~~   81 (429)
T TIGR00909        12 MLGIGAMIGTGIFVVTGIAAG-KAGPAVILSFVLAGLTALFIALVYAELA-AM-LPVAGSPYTYAYEAMGELT   81 (429)
T ss_pred             HHHHhhhhcchHHHhHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCcceeeHHHHhCcHH
Confidence            356789999999999999875 6899998999887     7899999999 98 9999999999999988754

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.99  E-value=1.1e-09  Score=79.87  Aligned_cols=67  Identities=13%  Similarity=-0.012  Sum_probs=54.4

Q ss_pred             CeEeecceecchhhhhhHHHHHhccch-HHH---HHHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132            1 MNKSVDSTLGAGAYILVGTVAREHSGP-ALT---LSFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         1 ~~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~---la~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      +++.+|++||+|||.+|+..++ ..++ +.+   ++|++. ..+++|+|+. ++ +|+++|.++|.++..||-++
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~-~g~~~~~~~~i~~~~~~~~~~l~~~el~-~~-~p~~~~~~~~~~~~~G~~~g   74 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAG-AWFIWTLLLLILLWFLMLHSGLLLLEVY-LT-YPGGASFNTIAKDLLGKTGN   74 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhCHHHH
Confidence            3688999999999999998774 4433 332   244445 9999999999 88 99999999999999998764

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.97  E-value=3e-10  Score=85.68  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             eecce-ecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            4 SVDST-LGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         4 ~vG~~-IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      +++.+ +++|||.+++.... .+||+.+++|+++     +.+++|+||+ ++ +|++||.|+|+++..|+-|
T Consensus        24 ~~~~~~~~~gi~~~~~~~~~-~~Gp~~~~~~li~~i~~l~~als~aEL~-s~-~P~aGG~Y~~~~~~~g~~~   92 (475)
T TIGR03428        24 GFSFVSILTTIFQLFGFGYG-FGGPAFFWTWPVVFVGQLLVALNFAELA-AR-YPISGAIYQWSRRMGGEVI   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCCHHHHHHHHcCccc
Confidence            44543 89999999999885 7999999999988     8999999999 98 9999999999999988743

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.94  E-value=3e-10  Score=85.26  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|+++|+|+|+..+.++. .+|| +.+++|+++     +.+.|++|++ .+ +|++||.|+|+++++|+-+
T Consensus         4 ~~~ig~~ig~g~f~~~g~~~~-~~G~~~~~la~li~~i~~~~~~~~~~ems-~~-~p~~Gg~y~y~~~~lg~~~   74 (478)
T PF00324_consen    4 MISIGGIIGTGLFLGSGFAIA-AAGPGGAPLAYLIAGIIVLLVALSLAEMS-RR-FPSAGGFYAYASRGLGPAL   74 (478)
T ss_pred             EeeHHHHHHHHHHHHHHHHHH-hcccccchhHhHHHHHHHHhhhhhhhhhh-hh-hccccchhhhhhhccCCcC
Confidence            688999999999999999886 6888 788888888     8899999999 98 9999999999999998743

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.91  E-value=1.4e-09  Score=79.51  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      ++.+|.++|+|+|..|  .+ +.+||..+++|+++      ..+++|+|++ ++ +|++||.|+|+++..|+.|.
T Consensus         8 ~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~~el~-~~-~p~~GG~y~~~~~~~g~~~g   77 (426)
T PF13520_consen    8 ALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSYAELS-SA-YPSAGGIYVWVSRAFGPFWG   77 (426)
T ss_dssp             HHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHHHHHH-TT-TTSSTTHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-CCCcCeeeehhhhcccccch
Confidence            3568899999999988  34 35899999888887      6889999999 88 99999999999999998774

...

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.82  E-value=1.8e-09  Score=81.18  Aligned_cols=57  Identities=5%  Similarity=-0.072  Sum_probs=50.0

Q ss_pred             chhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132           11 AGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus        11 sGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      +|+|.+.+...+ .+|| +++++|+++     +.+++|+||+ ++ +|++||.|.|++++.++-|+
T Consensus        31 ~g~~~~~~~~~~-~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~-s~-~P~~Gg~y~~~~~~~g~~~g   93 (482)
T TIGR00907        31 TGISTTYNYGLS-SGGAMSIVWGWIIAGAGSICIALSLAELS-SA-YPTSGGQYFWSAKLAPPRQM   93 (482)
T ss_pred             HHHHHHHHHhhh-cCCccchhHHHHHHHHHHHHHHHHHHHHH-hh-CCCCccHHHHHHHhcccccc
Confidence            799998887664 6898 678899998     8999999999 98 99999999999999987654

>TIGR00908 2A0305 ethanolamine permease

Probab=98.76  E-value=6.3e-09  Score=77.37  Aligned_cols=64  Identities=9%  Similarity=-0.062  Sum_probs=52.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++|.+|| |+|...+...+ .+|| +.+++|++.     ..++||+|++ ++ +|++||.|.|+++..|+-+
T Consensus        16 ~l~~~~~ig-g~~~~~~~~~~-~~G~~~~~~~~~i~~~~~~~~a~~~aEl~-s~-~P~~Gg~y~~~~~~~G~~~   85 (442)
T TIGR00908        16 GIGVGYVIS-GDYAGWNFGLA-QGGWGGFVVATLLVATMYLTFCFSLAELS-TM-IPTAGGGYGFARRAFGPWG   85 (442)
T ss_pred             HhHHHHHhh-ccchhHhhHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCCCHHHHHHHHhCcHH
Confidence            456788897 88888776664 5788 456677766     7789999999 98 9999999999999988754

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.70  E-value=1.6e-08  Score=83.76  Aligned_cols=63  Identities=6%  Similarity=0.015  Sum_probs=53.7

Q ss_pred             ecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            5 VDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         5 vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      +++|+|+|||+.++.++. .+|+. .++.|+++     ++++||+|++ ++.+|++||.|.|+++.+|.-+
T Consensus        89 ~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaLS~seia-Tng~p~aGG~Y~yisralGp~~  157 (953)
T TIGR00930        89 LLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGLSMSAIA-TNGVVKGGGAYYLISRSLGPEF  157 (953)
T ss_pred             hHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHhCcHH
Confidence            789999999999999996 57865 45667776     9999999999 6449999999999999888643

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.44  E-value=9.9e-08  Score=69.80  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             EeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            3 KSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         3 l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      +.++.++|+|+|..++..+. .+ |...++|+++     +.+++|+|++ +. +|++||.|.|+++-.|+.+
T Consensus        23 ~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~~~~el~-~~-~p~~GG~y~~~~~~~g~~~   90 (466)
T COG0531          23 LGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLALSYAELS-SA-IPSAGGAYAYAKRALGPRL   90 (466)
T ss_pred             HHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCeeeehhhhcCcch
Confidence            45788999999999998875 34 5555557776     6689999999 87 9999999999999998754

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.44  E-value=1.1e-07  Score=68.98  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ++.++.+||+|++..|+.+++ .+|+..+++++++     ..+++|+|+. .+ +|+. +.++|.++..||-+
T Consensus        10 ~l~~~~~iG~gil~~P~~~~~-~a~~~~wi~~ll~~~~~~~~~~~~~~l~-~~-~p~~-~~~~~~~~~~Gk~~   78 (359)
T TIGR00912        10 FLISSTMIGSGLLTLPALVSQ-SAGQDGWISIILGGLIIIFLLCLMIKIM-SK-FPEK-NFSEILSKYLGKIL   78 (359)
T ss_pred             HHHHHHHHHHHHHhhhHHHHh-ccCCCeeHHHHHHHHHHHHHHHHHHHHH-HH-CCCC-CHHHHHHHHhhHHH
Confidence            356789999999999998885 6888888888877     7889999999 98 9987 69999999999854

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.42  E-value=1.8e-07  Score=71.10  Aligned_cols=64  Identities=8%  Similarity=-0.129  Sum_probs=49.7

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhhhc
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCWRR   71 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~~~   71 (72)
                      ++++++++|.+-  .|.. . +..||+.++.|+++      ..++||+||+ ++ +|+ +||.|.|.++..|+-|.+
T Consensus        16 ~~~~~~vig~~~--~~~~-~-~~~G~~~i~~~~i~~~~~~l~~al~~aEL~-s~-~P~~aGG~Y~w~~~~~G~~~gf   86 (496)
T PRK15238         16 LMIFTSVFGFAN--SPRA-F-YLMGYSAIPWYILSAILFFIPFALMMAEYG-SA-FKDEKGGIYSWMNKSVGPKFAF   86 (496)
T ss_pred             HHHHHHHHhCCc--hHHH-H-HHcChHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCcHHHHHHHHcCchHHH
Confidence            356678888653  2322 2 24799998888877      4789999999 88 997 899999999999988753

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.23  E-value=9.8e-07  Score=66.59  Aligned_cols=45  Identities=9%  Similarity=0.078  Sum_probs=40.1

Q ss_pred             hccchHHHHHHHHH------HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132           23 EHSGPALTLSFPYS------WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus        23 ~~aGp~~~la~li~------~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ...||+.+++|+++      ..++||+||+ ++ +|++||.|.|+++..|+-|
T Consensus        26 a~~G~~~~~~~~i~~~~~~ip~al~~aEL~-~~-~P~~GG~y~~~~~a~G~~~   76 (474)
T TIGR03813        26 AEYGLSAAFYYLFAAIFFLVPVSLVAAELA-TA-WPEKGGVFRWVGEAFGARW   76 (474)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-CCCCCCceeeHhhhcChhH
Confidence            35899999999888      4888999999 88 9999999999999999765

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PHA02764 hypothetical protein; Provisional

Probab=97.97  E-value=5.6e-06  Score=63.66  Aligned_cols=44  Identities=5%  Similarity=-0.028  Sum_probs=38.9

Q ss_pred             ccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132           24 HSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus        24 ~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      ..|+..+++|+++     ..++||+|++ ++ +|++||.|.|+++-.|+.+
T Consensus        43 ~pG~nlLLAWLLGGLlALPgAL~YAELG-SA-mPrAGGdYVYISRAFGP~~   91 (399)
T PHA02764         43 LKNVNLLFAILIGAVFEIPLLLMYYKLT-TK-FPLNGGDYAYIRTAFSSKF   91 (399)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCceEEEhHHhhCccH
Confidence            4677888899988     8899999999 88 9999999999999888743

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.19  E-value=0.00049  Score=52.11  Aligned_cols=66  Identities=14%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccch--HHHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhhc
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGP--ALTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRR   71 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp--~~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~~   71 (72)
                      ++..|+.||+|+..+|-...  .+|.  ..++   +|.+. ..++.++|+. .+ .|+.-+..+.+++|.||-|+.
T Consensus        10 ~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~-~~-~~~~~~~~~~a~~~lG~~g~~   81 (394)
T PF03222_consen   10 LLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSGLLLAEVS-LN-TPEGSSLTSMAEKYLGKKGGI   81 (394)
T ss_pred             HHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhChHHHH
Confidence            35689999999999997654  3563  2222   34444 8999999999 87 999999999999999999874

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.14  E-value=0.0003  Score=54.29  Aligned_cols=54  Identities=13%  Similarity=0.026  Sum_probs=42.4

Q ss_pred             hhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhhccCC-CCCcHHHHHHHHHHHhhh
Q 035132           12 GAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLCRACK-SLAICWECLSLFIHMCWR   70 (72)
Q Consensus        12 GIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~~~~P-~~Gg~~~~~~~~~~~~~~   70 (72)
                      +++-.|. .+  ..|++.+.-|+++      ..++|++||+ ++ +| ++||.|.|+++..|+-|.
T Consensus        21 ~~~~~~~-~a--~~G~~~i~~~i~~~l~~~lp~al~~AELa-s~-~p~~~GG~y~wv~~a~G~~~G   81 (507)
T TIGR00910        21 AVYEYPT-FA--TSGFHLVFFLLLGGILWFIPVALCAAEMA-TV-DGWEEGGIFAWVSNTLGERFG   81 (507)
T ss_pred             HHHhhHH-HH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCCCeeeehhhccCccHH
Confidence            4555553 22  4688887777776      4799999999 87 97 999999999999998764

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.73  E-value=0.0023  Score=51.52  Aligned_cols=44  Identities=7%  Similarity=0.035  Sum_probs=39.4

Q ss_pred             chHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhhc
Q 035132           26 GPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRR   71 (72)
Q Consensus        26 Gp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~~   71 (72)
                      +|.++.+|+++     .++++.+|++ +. +|.+||-|.-+.++..+-|+|
T Consensus        82 ~~~~vwgwlIa~~~~i~va~slaEl~-Sa-~PtsGgLy~waa~lap~k~~~  130 (550)
T KOG1289|consen   82 PPTLVWGWLIAGFFSICVALSLAELC-SA-MPTSGGLYFWAAVLAPPKYGP  130 (550)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHH-hh-CCCCCcHHHHHHHhcCcchhh
Confidence            45777799999     8999999999 97 999999999999999888876

>PRK09664 tryptophan permease TnaB; Provisional

Probab=96.37  E-value=0.0059  Score=47.32  Aligned_cols=66  Identities=9%  Similarity=0.019  Sum_probs=51.8

Q ss_pred             eEeecceecchhhhhhHHHHHhccc--hHHHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhhc
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSG--PALTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRR   71 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aG--p~~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~~   71 (72)
                      ++..|++||+|++-+|-..+  .+|  |+.++   +|++- .+++.+.|.. .. +|+.-+...-+++++||-|+.
T Consensus        16 ~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~LlllEv~-l~-~~~g~~l~tma~~~LG~~g~~   87 (415)
T PRK09664         16 MVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGLLLLEAN-LN-YPVGSSFNTITKDLIGNTWNI   87 (415)
T ss_pred             HHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCHHHHHHHHcChHHHH
Confidence            56789999999999996443  355  33333   34444 8889999999 88 999889999999999999874

>TIGR00814 stp serine transporter

Probab=96.37  E-value=0.0025  Score=48.48  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=43.3

Q ss_pred             EeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhhhc
Q 035132            3 KSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCWRR   71 (72)
Q Consensus         3 l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~~~   71 (72)
                      ...|.+||+|++.+|....  ..|- ..++..+++     ...+.+.|.. .. .|. ..+..++.+++.||-|..
T Consensus        11 ~l~gt~IGaGiL~LP~~ag--~~G~i~~li~~l~~~pl~~~~~~ll~~~~-l~-~~~p~~~i~~~~~~~fGk~~G~   82 (397)
T TIGR00814        11 GLYGTAIGAGVLFLPIQAG--LGGLWVLVLMAIIAYPLTYFGHRALARFL-LS-SKNPCEDITEVVEEHFGKNWGI   82 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCCHHHHHHHHcCHHHHH
Confidence            3468899999999998632  3442 222222222     4455677775 33 454 788999999999998763

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10483 tryptophan permease; Provisional

Probab=96.31  E-value=0.005  Score=47.67  Aligned_cols=65  Identities=8%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             eEeecceecchhhhhhHHHHHhccc--hHHHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSG--PALTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aG--p~~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      ++..|++||+|++-+|-..+  .+|  |+.++   +|++- ..++...|.. .+ +|+.-+...-+++++||-|+
T Consensus        18 ~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~taLlllEv~-l~-~~~g~~~~tma~~~LG~~g~   88 (414)
T PRK10483         18 VIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSGLMILEAN-LN-YRIGSSFDTITKDLLGKGWN   88 (414)
T ss_pred             HHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCHHHHHHHHcChHHH
Confidence            45679999999999996443  345  34333   34444 8889999999 88 89988999999999999987

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=96.07  E-value=0.0096  Score=45.66  Aligned_cols=65  Identities=12%  Similarity=0.096  Sum_probs=49.0

Q ss_pred             eEeecceecchhhhhhHHHHHhccchH--HHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPA--LTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~--~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      ++..|+.||+|++.+|=...  .+|..  .++   +|.+- ..++.++|.. .. .|+.-+..+-+++++||-|+
T Consensus        10 ~li~GTaIGAGmLaLPi~~~--~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~-~~-~~~~~~~~~~a~~~LG~~g~   80 (403)
T PRK15132         10 FIVAGTTIGAGMLAMPLAAA--GVGFSVTLILLIGLWALMCYTALLLLEVY-QH-VPADTGLGTLAKRYLGRYGQ   80 (403)
T ss_pred             HHHHhcchhHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CCCCCCHHHHHHHHhChHHH
Confidence            45679999999999997554  36643  222   34422 7778899977 76 78778899999999999886

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=95.95  E-value=0.0071  Score=46.13  Aligned_cols=65  Identities=14%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             EeecceecchhhhhhHHHHHhccch--HHHH---HHHHH-HHHHHHHHhHhhccCCCCC-cHHHHHHHHHHHhhhc
Q 035132            3 KSVDSTLGAGAYILVGTVAREHSGP--ALTL---SFPYS-WNSFCFFSLLLCRACKSLA-ICWECLSLFIHMCWRR   71 (72)
Q Consensus         3 l~vG~~IGsGIF~~~g~v~~~~aGp--~~~l---a~li~-~~al~yaEL~~~~~~P~~G-g~~~~~~~~~~~~~~~   71 (72)
                      +..|++||+|+...|=..  ..+|-  .+++   +|... ...+++.|.. .. .|+.. +..+-+++|+|+-||.
T Consensus        17 ~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~-~~-~~~~~~~~~~~~~~~~G~~~~~   88 (415)
T COG0814          17 ILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEAL-LS-SPNGKASITSLVEDYLGKKGGI   88 (415)
T ss_pred             HHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCcccHHHHHHHHhCcchHH
Confidence            457899999999999532  24553  2222   34444 9999999999 87 99884 9999999999999973

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=94.60  E-value=0.089  Score=41.36  Aligned_cols=64  Identities=13%  Similarity=0.094  Sum_probs=47.8

Q ss_pred             eecceecchhhhhhHHHHHhccchHHHH-----HHHHH-HHHHHHHHhHhhccC-CCCCcHHHHHHHHHHHhhhc
Q 035132            4 SVDSTLGAGAYILVGTVAREHSGPALTL-----SFPYS-WNSFCFFSLLLCRAC-KSLAICWECLSLFIHMCWRR   71 (72)
Q Consensus         4 ~vG~~IGsGIF~~~g~v~~~~aGp~~~l-----a~li~-~~al~yaEL~~~~~~-P~~Gg~~~~~~~~~~~~~~~   71 (72)
                      ..|..||+|++.+|=...  ..|....+     +|.+. +..+.++|.. .. . |+..+..+-++++.||-|+.
T Consensus        28 l~GTAIGAGmLfLPI~~g--~~Gf~p~lillll~~p~m~~s~l~L~e~~-L~-~~~~~~~i~~v~~~~lG~~g~~   98 (443)
T PRK13629         28 LFGTAIGAGVLFFPIRAG--FGGLIPILLMLVLAYPIAFYCHRALARLC-LS-GSNPSGNITETVEEHFGKTGGV   98 (443)
T ss_pred             HHHHHHhHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc-cCCCCCCHHHHHHHHcChhHHH
Confidence            468999999999996543  46653222     33333 7789999999 65 6 66677899999999999874

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=93.04  E-value=0.24  Score=37.85  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=40.9

Q ss_pred             ceecchhhhhhHHHHHhccchHH---HHHHHHHHHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132            7 STLGAGAYILVGTVAREHSGPAL---TLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCW   69 (72)
Q Consensus         7 ~~IGsGIF~~~g~v~~~~aGp~~---~la~li~~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~   69 (72)
                      --+|+|.++.|..+.+ .+|..+   ++.|+++-+.+-..=+.  . .|++||.++++++-+||.+
T Consensus         7 mffGAGNlIfPp~lG~-~aG~~~~~a~lgf~ltgV~lpllgl~--a-v~~~gG~~~~l~~~~g~~f   68 (378)
T TIGR00796         7 LFFGAGNIIFPPMLGL-AAGEHVWTAALGFLLTGVGLPLLGLI--A-LALVGGGYDSLSARIGKVF   68 (378)
T ss_pred             HHHhhhHHhhhHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHh--e-eeecCCCHHHHHHHhChHH
Confidence            3479999999999886 577553   44666662222222222  3 8999999999999888754

transmembrane helical spanners.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=92.37  E-value=0.2  Score=36.07  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             eecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132            4 SVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         4 ~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      .+..++|+++...|+..+++ +| ..+++.+++     +.++.+..+. .+ +|+. ...|+.++..||-+.
T Consensus        11 ~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~-~~-~p~~-~l~~~~~~~~Gk~lg   77 (320)
T PF03845_consen   11 LISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLL-KR-FPGK-TLVEISEKLFGKWLG   77 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHH-HH-CCCC-CHHHHHHHHhCcHHH
Confidence            34578899999999999864 56 666666665     7778888899 88 8865 488999998887553

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=84.25  E-value=1.9  Score=33.76  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             eecceecchhhhhhHHHHHhccchHHHH-HHHHH--HHHHHHHHhHhhccCC-------CCCcHHHHHHHHHHHhh
Q 035132            4 SVDSTLGAGAYILVGTVAREHSGPALTL-SFPYS--WNSFCFFSLLLCRACK-------SLAICWECLSLFIHMCW   69 (72)
Q Consensus         4 ~vG~~IGsGIF~~~g~v~~~~aGp~~~l-a~li~--~~al~yaEL~~~~~~P-------~~Gg~~~~~~~~~~~~~   69 (72)
                      ++++.||+|=-......+ ...||++++ -|+.+  -.+..|+|-.++.-+.       ..||...|+++.+++-|
T Consensus        28 ala~~vG~GNI~GVa~AI-~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~  102 (416)
T PF01235_consen   28 ALAGTVGTGNIAGVATAI-AIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW  102 (416)
T ss_pred             HHHhccCcchHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch
Confidence            456778888666666555 479997776 56666  4557888876442122       23789999999998776

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.25
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.25
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.45
1ter_A	26	Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.	89.01

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.25  E-value=2.4e-12  Score=92.27  Aligned_cols=65  Identities=11%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      ++.+|++||+|+|..|+.+.  .+||..+++|+++     +.+++|+|++ ++ +|++||.|+|+++..|+-+.
T Consensus        17 ~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~-~~-~p~~Gg~y~~~~~~~G~~~g   86 (445)
T 3l1l_A           17 LMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMS-FL-DPSPGGSYAYARRCFGPFLG   86 (445)
T ss_dssp             HHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCTTTHHHHHHHHSCHHHH
T ss_pred             HHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH-cc-CCCCCCchhhHHhHcCChHH
Confidence            35689999999999999854  3799988999888     8889999999 98 99999999999999887653

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.25  E-value=2.2e-12  Score=92.61  Aligned_cols=64  Identities=20%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMC   68 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~   68 (72)
                      ++++|.+||+|+|..++..++ .+||..+++|+++     +.+++|+|++ ++ +|++||.|+|+++..|+-
T Consensus        15 ~l~~g~~iG~gi~~~~~~~~~-~~G~~~~~~~li~~~~~~~~~~~~~el~-~~-~P~~Gg~y~~~~~~~G~~   83 (444)
T 3gia_A           15 SMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYTKLG-AK-IVSNAGPIAFIHKAIGDN   83 (444)
T ss_dssp             HHHHHHHHHHHTTTSHHHHHH-HHGGGHHHHHHHHHHHHHHHHHHHHHHH-TT-CCCTTTHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCcHHHhHHHHhCcc
Confidence            357889999999999998774 6899999999988     8889999999 98 999999999999999874

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.45  E-value=1.6e-07  Score=68.45  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=46.6

Q ss_pred             eEeecceecchhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhh--ccCCCCCcHHHHHHHHHHHhhh
Q 035132            2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLC--RACKSLAICWECLSLFIHMCWR   70 (72)
Q Consensus         2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~--~~~P~~Gg~~~~~~~~~~~~~~   70 (72)
                      +++++.++|  ++..++  . ..+||..++.++++      ..+++|+|++ +  + +| +||.|.|+++..|+-|.
T Consensus        20 ~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~-s~~~-~P-~GG~y~~~~~~~g~~~g   88 (511)
T 4djk_A           20 AITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMA-TVDG-WE-EGGVFAWVSNTLGPRWG   88 (511)
T ss_dssp             HHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHH-TTSC-C----CHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccc-CC-CCChhhhHHhhcCchHH
Confidence            356788885  666665  2 35899988888777      3799999999 8  8 99 99999999999998764

>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1

Probab=89.01  E-value=0.072  Score=25.93  Aligned_cols=7  Identities=71%  Similarity=2.513  Sum_probs=6.3

Q ss_pred             HHhhhcC
Q 035132           66 HMCWRRC   72 (72)
Q Consensus        66 ~~~~~~~   72 (72)
                      ||||++|
T Consensus        12 hmcwkkc   18 (26)
T 1ter_A           12 HMCWKKC   18 (26)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHh
Confidence            8999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00