Citrus Sinensis ID: 035193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MPSYLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVEK
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEEcc
Coil and Loop (DISEMBL)
MPSYLDAFFQInfkheipadrtgdfNMIYDFLRENWNIVKWVALGVVILQnrfrmgrvdLTFRFALVVEK
Flexible Loop (DISEMBL)
MPSYLDAFFQInfkheipadrtGDFNMIYDFLRENWNIVKWVALGVVILqnrfrmgrvdLTFRFALVVEK
Low Complexity Region (SEG)
MPSYLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVEK
Disordered region (IsUnstruct)
***YLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVV**
Disordered Region (DISOPRED)
*PSYLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVEK
Disordered Region (DISEMBL)
MPSYLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVEK
Disordered Region (DISPRO)
*PSYLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVEK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSYLDAFFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVVEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
118481618	280	unknown [Populus trichocarpa]	0.757	0.189	0.573	2e-12
255573421	280	conserved hypothetical protein [Ricinus	0.757	0.189	0.573	5e-12
356511490	277	PREDICTED: uncharacterized protein LOC54	0.757	0.191	0.573	6e-12
358248102	277	uncharacterized protein LOC100793680 [Gl	0.757	0.191	0.557	1e-11
388504306	282	unknown [Lotus japonicus]	0.757	0.187	0.557	1e-11
357482319	294	GMFP4 [Medicago truncatula] gi|355512780	0.585	0.139	0.707	5e-11
357482323	289	GMFP4 [Medicago truncatula] gi|355512782	0.585	0.141	0.707	5e-11
357482321	220	GMFP4 [Medicago truncatula] gi|355512781	0.585	0.186	0.707	9e-11
224138040	280	predicted protein [Populus trichocarpa]	0.614	0.153	0.627	1e-10
388518773	220	unknown [Medicago truncatula]	0.585	0.186	0.707	1e-10

>gi|118481618|gb|ABK92751.1| unknown [Populus trichocarpa]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 8/61 (13%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALV 67
           FF  ++K EIP D+TGDF+M+YDFL+E WNIVKWVALG+VIL+         L F  AL+
Sbjct: 133 FFDKSWKEEIPTDKTGDFDMLYDFLKEKWNIVKWVALGIVILEA--------LIFLLALL 184

Query: 68  V 68
           V
Sbjct: 185 V 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573421|ref|XP_002527636.1| conserved hypothetical protein [Ricinus communis] gi|223532941|gb|EEF34707.1| conserved hypothetical protein [Ricinus communis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 8/61 (13%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALV 67
           FF  ++K EIP D+TGDF+MIYDFL+E W IV+WVALGVVIL+         L F  AL+
Sbjct: 133 FFDKSWKEEIPTDKTGDFDMIYDFLKEKWKIVRWVALGVVILEA--------LLFVLALI 184

Query: 68  V 68
           V
Sbjct: 185 V 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511490|ref|XP_003524459.1| PREDICTED: uncharacterized protein LOC547883 [Glycine max]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 8/61 (13%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALV 67
           FF  ++K EIP D+TGDF+MIY FLRENWNIV+WVALG+VI +         L F  AL+
Sbjct: 130 FFDKSWKEEIPTDKTGDFDMIYGFLRENWNIVRWVALGIVIFEA--------LLFVLALI 181

Query: 68  V 68
           V
Sbjct: 182 V 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248102|ref|NP_001240069.1| uncharacterized protein LOC100793680 [Glycine max] gi|255641974|gb|ACU21254.1| unknown [Glycine max]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 8/61 (13%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALV 67
           FF  ++K EIP D+TGDF+MIY+FLRENWN+V+WVALG+VI +         L F  AL+
Sbjct: 130 FFDKSWKEEIPKDKTGDFDMIYEFLRENWNVVRWVALGIVIFEA--------LLFVLALI 181

Query: 68  V 68
           V
Sbjct: 182 V 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504306|gb|AFK40219.1| unknown [Lotus japonicus]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 8/61 (13%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALV 67
           FF  ++K EIP D+TG+F+MIY+FLRENWNIV+WVALG+VI +         L F  AL+
Sbjct: 135 FFDKSWKKEIPTDKTGNFDMIYEFLRENWNIVRWVALGIVIFEA--------LLFVLALI 186

Query: 68  V 68
           V
Sbjct: 187 V 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482319|ref|XP_003611445.1| GMFP4 [Medicago truncatula] gi|355512780|gb|AES94403.1| GMFP4 [Medicago truncatula]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVI 48
           FF  ++K EIP D+TGDF+MIY FLRENW+IV+WVALG+VI
Sbjct: 146 FFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482323|ref|XP_003611447.1| GMFP4 [Medicago truncatula] gi|355512782|gb|AES94405.1| GMFP4 [Medicago truncatula]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVI 48
           FF  ++K EIP D+TGDF+MIY FLRENW+IV+WVALG+VI
Sbjct: 141 FFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482321|ref|XP_003611446.1| GMFP4 [Medicago truncatula] gi|355512781|gb|AES94404.1| GMFP4 [Medicago truncatula]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVI 48
           FF  ++K EIP D+TGDF+MIY FLRENW+IV+WVALG+VI
Sbjct: 72  FFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138040|ref|XP_002326503.1| predicted protein [Populus trichocarpa] gi|222833825|gb|EEE72302.1| predicted protein [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 37/43 (86%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQ 50
           FF  ++K  +P D++GDF+MIY FL+ENWNIV+WVALG+VIL+
Sbjct: 133 FFDKSWKEVLPTDKSGDFDMIYKFLKENWNIVRWVALGIVILE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518773|gb|AFK47448.1| unknown [Medicago truncatula]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 8   FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVI 48
           FF  ++K EIP D+TGDF+MIY FLRENW+IV+WVALG+VI
Sbjct: 72  FFDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVALGIVI 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2033718	280	TOM2A "tobamovirus multiplicat	0.614	0.153	0.581	9.8e-11

TAIR|locus:2033718 TOM2A "tobamovirus multiplication 2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 25/43 (58%), Positives = 36/43 (83%)

Query:     8 FFQINFKHEIPADRTGDFNMIYDFLRENWNIVKWVALGVVILQ 50
             FF  +++ E+P+DRTG+F+ IY+FLRENW IV+WVALG V+ +
Sbjct:   133 FFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFE 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.333   0.146   0.467    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 21  0.37    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  106 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.81u 0.12s 6.93t   Elapsed:  00:00:01
  Total cpu time:  6.81u 0.12s 6.93t   Elapsed:  00:00:01
  Start:  Fri May 10 06:25:58 2013   End:  Fri May 10 06:25:59 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=ISS

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01180051 Putative uncharacterized protein (267 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG3882	237	consensus Tetraspanin family integral membrane pro	95.78
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	92.2

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=95.78  E-value=0.017  Score=40.11  Aligned_cols=40  Identities=25%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             CCCChHHHHHHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhh
Q 035193           21 RTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVV   68 (70)
Q Consensus        21 pTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvL   68 (70)
                      ..|=++.+++++++|..+..++++++.++|.        +.+++|+.|
T Consensus       185 ~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~--------~~~~~a~~l  224 (237)
T KOG3882|consen  185 TEGCLEKLSSWLESNLLIIGGVGLGIAVLEL--------LGMILACCL  224 (237)
T ss_pred             ccccHHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence            4688899999999999999999999999999        999999976

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=92.20  E-value=0.077  Score=33.66  Aligned_cols=44  Identities=18%  Similarity=0.338  Sum_probs=13.9

Q ss_pred             CCCCCCCChHHHHHHHhhhhhhHhhhhhhhhhhhcccccccchhHHHHHhhh
Q 035193           17 IPADRTGDFNMIYDFLRENWNIVKWVALGVVILQNRFRMGRVDLTFRFALVV   68 (70)
Q Consensus        17 iP~DpTG~f~~~~~Fv~~N~~IckWV~L~vv~~Q~~f~~~~~~Ls~llAmvL   68 (70)
                      -+....|=.+.++++++++....-++++++.++|.        +++++|+.|
T Consensus       174 ~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~a~~l  217 (221)
T PF00335_consen  174 NSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQL--------IGIILACCL  217 (221)
T ss_dssp             HCCTST-HHHHHHHHHCT----------------------------------
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence            34566788899999999999999999999999999        999998875

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00