Citrus Sinensis ID: 035270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELSDWSDES
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEccHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLfyeselsdwsdes
Flexible Loop (DISEMBL)
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYEselsdwsdes
Low Complexity Region (SEG)
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELSDWSDES
Disordered region (IsUnstruct)
****WIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES*********
Disordered Region (DISOPRED)
****WIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYE**********
Disordered Region (DISEMBL)
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES*********
Disordered Region (DISPRO)
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES*********
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELSDWSDES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
225438569	191	PREDICTED: uncharacterized protein LOC10	0.985	0.356	0.794	6e-26
224081248	202	stress enhanced protein 2 [Populus trich	0.985	0.336	0.794	1e-24
356525533	197	PREDICTED: uncharacterized protein LOC10	1.0	0.350	0.710	1e-23
255575559	201	conserved hypothetical protein [Ricinus	0.985	0.338	0.764	2e-23
356512744	206	PREDICTED: uncharacterized protein LOC10	1.0	0.334	0.728	6e-23
449448410	230	PREDICTED: uncharacterized protein LOC10	0.985	0.295	0.691	3e-21
297825055	202	hypothetical protein ARALYDRAFT_481062 [	0.985	0.336	0.617	9e-18
18399845	202	stress enhanced protein 2 [Arabidopsis t	0.985	0.336	0.602	3e-17
14423380	170	Unknown protein [Arabidopsis thaliana] g	0.985	0.4	0.602	4e-17
357166247	193	PREDICTED: uncharacterized protein LOC10	0.985	0.352	0.588	4e-17

>gi|225438569|ref|XP_002280145.1| PREDICTED: uncharacterized protein LOC100252506 [Vitis vinifera] gi|296082497|emb|CBI21502.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 63/68 (92%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           MD+Q I EAGGVC+GA+  AA+FAWFSSARNRVGR+FT+SCNTFIDSLID+I+DGLFYES
Sbjct: 123 MDLQGIAEAGGVCVGAVACAAVFAWFSSARNRVGRIFTISCNTFIDSLIDRIIDGLFYES 182

Query: 61  ELSDWSDE 68
           E +DWSDE
Sbjct: 183 ESNDWSDE 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081248|ref|XP_002306351.1| stress enhanced protein 2 [Populus trichocarpa] gi|222855800|gb|EEE93347.1| stress enhanced protein 2 [Populus trichocarpa]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 61/68 (89%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           MD+  IEEA GVCLGA+  AAIFAWFSSARNRVGR+FT+ CNTFIDSLID+IVDGLFY++
Sbjct: 134 MDLVGIEEAVGVCLGAVTCAAIFAWFSSARNRVGRIFTIGCNTFIDSLIDEIVDGLFYDT 193

Query: 61  ELSDWSDE 68
           E SDWSDE
Sbjct: 194 EPSDWSDE 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525533|ref|XP_003531379.1| PREDICTED: uncharacterized protein LOC100783763 [Glycine max]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 59/69 (85%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           MD++ I EAGGVCLGA+  AA+FAWF SARNRVGR+FT+SCN FIDS+IDQI+DGLFYE 
Sbjct: 129 MDIEGITEAGGVCLGAVTCAALFAWFCSARNRVGRIFTVSCNAFIDSVIDQIIDGLFYEG 188

Query: 61  ELSDWSDES 69
           + +DW DE 
Sbjct: 189 DPTDWPDEP 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575559|ref|XP_002528680.1| conserved hypothetical protein [Ricinus communis] gi|223531903|gb|EEF33719.1| conserved hypothetical protein [Ricinus communis]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 59/68 (86%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           MD+Q I EA GVCLGA+  AA+FAWFSSARNRVGR+FT SCNTFID LID+IVDGLFYE 
Sbjct: 133 MDVQGIAEAAGVCLGAVTCAAVFAWFSSARNRVGRIFTTSCNTFIDLLIDEIVDGLFYEG 192

Query: 61  ELSDWSDE 68
           E SD+SD+
Sbjct: 193 ENSDYSDD 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512744|ref|XP_003525076.1| PREDICTED: uncharacterized protein LOC100806676 [Glycine max]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 60/70 (85%), Gaps = 1/70 (1%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           MD++ I EAGGVCLGA+  AA+FAWFSSARNRVGR+FT+SCN FIDS+IDQIVDGLFYE 
Sbjct: 137 MDIEGITEAGGVCLGAVTCAALFAWFSSARNRVGRIFTVSCNAFIDSVIDQIVDGLFYEG 196

Query: 61  -ELSDWSDES 69
            + +DW DE 
Sbjct: 197 DDPTDWPDEP 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448410|ref|XP_004141959.1| PREDICTED: uncharacterized protein LOC101206288 [Cucumis sativus] gi|449521904|ref|XP_004167969.1| PREDICTED: uncharacterized protein LOC101229262 [Cucumis sativus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 58/68 (85%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           MD++ IEE  GVCLGA+  A IFA+ S+ARNRVGR+F++SC TFIDSLIDQIVDGLFYE+
Sbjct: 162 MDLEGIEEGLGVCLGAVTLATIFAFSSNARNRVGRIFSISCTTFIDSLIDQIVDGLFYEN 221

Query: 61  ELSDWSDE 68
           +  DWSD+
Sbjct: 222 DTGDWSDD 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825055|ref|XP_002880410.1| hypothetical protein ARALYDRAFT_481062 [Arabidopsis lyrata subsp. lyrata] gi|297326249|gb|EFH56669.1| hypothetical protein ARALYDRAFT_481062 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 57/68 (83%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           +D++ + EA G  L A+  AAIFAW + +RNRVGR+FT+SCN+FIDSL+DQIVDGLFY++
Sbjct: 134 LDVEGLSEAIGAGLAAMGCAAIFAWLTISRNRVGRIFTVSCNSFIDSLVDQIVDGLFYDT 193

Query: 61  ELSDWSDE 68
           + SDWSD+
Sbjct: 194 KPSDWSDD 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399845|ref|NP_565524.1| stress enhanced protein 2 [Arabidopsis thaliana] gi|7384980|gb|AAF61626.1|AF133717_1 stress enhanced protein 2 [Arabidopsis thaliana] gi|4417289|gb|AAD20414.1| expressed protein [Arabidopsis thaliana] gi|21536637|gb|AAM60969.1| unknown [Arabidopsis thaliana] gi|330252153|gb|AEC07247.1| stress enhanced protein 2 [Arabidopsis thaliana]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 57/68 (83%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           +D++ + EA G  L A+  AA+FAW + +RNRVGR+FT+SCN+FIDSL+DQIVDGLFY++
Sbjct: 134 LDVEGLSEAIGAGLAAMGCAAMFAWLTISRNRVGRIFTVSCNSFIDSLVDQIVDGLFYDT 193

Query: 61  ELSDWSDE 68
           + SDWSD+
Sbjct: 194 KPSDWSDD 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423380|gb|AAK62372.1|AF386927_1 Unknown protein [Arabidopsis thaliana] gi|30102888|gb|AAP21362.1| At2g21970 [Arabidopsis thaliana]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 57/68 (83%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           +D++ + EA G  L A+  AA+FAW + +RNRVGR+FT+SCN+FIDSL+DQIVDGLFY++
Sbjct: 102 LDVEGLSEAIGAGLAAMGCAAMFAWLTISRNRVGRIFTVSCNSFIDSLVDQIVDGLFYDT 161

Query: 61  ELSDWSDE 68
           + SDWSD+
Sbjct: 162 KPSDWSDD 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357166247|ref|XP_003580648.1| PREDICTED: uncharacterized protein LOC100845758 [Brachypodium distachyon]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 50/68 (73%)

Query: 1   MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
           +D   IEEA GVCL  +  AA FAW SSAR R+GRM TL CN+F+D+LID +VD LF + 
Sbjct: 125 LDAVEIEEAAGVCLAVVASAATFAWVSSARGRIGRMLTLGCNSFVDALIDNVVDALFSDG 184

Query: 61  ELSDWSDE 68
           +L DWSD+
Sbjct: 185 QLQDWSDD 192

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2052489	202	SEP2 "stress enhanced protein	0.985	0.336	0.602	8.3e-19

TAIR|locus:2052489 SEP2 "stress enhanced protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 41/68 (60%), Positives = 57/68 (83%)

Query:     1 MDMQWIEEAGGVCLGAIVFAAIFAWFSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYES 60
             +D++ + EA G  L A+  AA+FAW + +RNRVGR+FT+SCN+FIDSL+DQIVDGLFY++
Sbjct:   134 LDVEGLSEAIGAGLAAMGCAAMFAWLTISRNRVGRIFTVSCNSFIDSLVDQIVDGLFYDT 193

Query:    61 ELSDWSDE 68
             + SDWSD+
Sbjct:   194 KPSDWSDD 201


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.41    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  109 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.19u 0.10s 7.29t   Elapsed:  00:00:01
  Total cpu time:  7.19u 0.10s 7.29t   Elapsed:  00:00:01
  Start:  Fri May 10 06:58:35 2013   End:  Fri May 10 06:58:36 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009765 "photosynthesis, light harvesting" evidence=ISS

GO:0016168 "chlorophyll binding" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
1l9l_A	74	Granulysin; saposin fold, membrane-lytic, antimicr	87.03

>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1

Probab=87.03  E-value=0.44  Score=28.28  Aligned_cols=38  Identities=11%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             HHhhhcchhhhhhhhhhHHHHHHHHHHHhhhcccCCCC
Q 035270           26 FSSARNRVGRMFTLSCNTFIDSLIDQIVDGLFYESELS   63 (69)
Q Consensus        26 ~ssAR~rVg~~ft~~cn~fvDslID~iVDgLFye~e~~   63 (69)
                      ....=++.+..+.--|.+|||.-.++||+.|=.+..|+
T Consensus        30 L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~P~   67 (74)
T 1l9l_A           30 ATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGETAQ   67 (74)
T ss_dssp             HHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            34455677877899999999999999999998776654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00