Citrus Sinensis ID: 035282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTATSRGMA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTTSKRLAERKNARFQknvtrrgsvpessakkgsdypigpiLLGFFVFVVLGSSLFQIIRTATSRGMA
Flexible Loop (DISEMBL)
mttskrlaerknarfqknvtrrgsvpessakkgsdypiGPILLGFFVFVVLGSSLFQIIRtatsrgma
Low Complexity Region (SEG)
MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPIllgffvfvvlgsslfQIIRTATSRGMA
Disordered region (IsUnstruct)
***********************************YPIGPILLGFFVFVVLGSSLFQIIRT*******
Disordered Region (DISOPRED)
****************************************ILLGFFVFVVLGSSLFQIIRTATSR***
Disordered Region (DISEMBL)
*********RKNARFQK***************GSDYPIGPILLGFFVFVVLGSSLFQIIRTATSRGMA
Disordered Region (DISPRO)
******************V*RRGSVPESS**KGSDYPIGPILLGFFVFVVLGSSLFQIIRTATS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTATSRGMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q6TAW2	65	Stress-associated endopla	yes	no	0.735	0.769	0.48	2e-08
Q8N6R1	65	Stress-associated endopla	yes	no	0.735	0.769	0.48	2e-08
Q3T073	65	Stress-associated endopla	yes	no	0.735	0.769	0.48	2e-08
Q5REZ1	66	Stress-associated endopla	no	no	0.735	0.757	0.450	2e-06
Q9R2C1	66	Stress-associated endopla	no	no	0.735	0.757	0.431	8e-06
Q9Z1W5	66	Stress-associated endopla	no	no	0.735	0.757	0.431	8e-06
Q9Y6X1	66	Stress-associated endopla	no	no	0.735	0.757	0.431	8e-06
Q3ZBR1	66	Stress-associated endopla	no	no	0.735	0.757	0.431	8e-06
Q553P6	59	Probable stress-associate	yes	no	0.838	0.966	0.4	8e-05

>sp|Q6TAW2|SERP2_MOUSE Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus GN=Serp2 PE=3 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++   +   YP+GP LL  FVFVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQS 60

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.
Mus musculus (taxid: 10090)

>sp|Q8N6R1|SERP2_HUMAN Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens GN=SERP2 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++   +   YP+GP LL  FVFVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQS 60

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.

Homo sapiens (taxid: 9606)

>sp|Q3T073|SERP2_BOVIN Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus GN=SERP2 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++   +   YP+GP LL  FVFVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQS 60

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.

Bos taurus (taxid: 9913)

>sp|Q5REZ1|SERP1_PONAB Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii GN=SERP1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 12 NARFQKNVTRRGSVPESSAKK-GSDYPIGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++S    G    +GP LL  F+FVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTSRNAPGEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Pongo abelii (taxid: 9601)

>sp|Q9R2C1|SERP1_RAT Stress-associated endoplasmic reticulum protein 1 OS=Rattus norvegicus GN=Serp1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYP-IGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++S     +   +GP LL  F+FVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1W5|SERP1_MOUSE Stress-associated endoplasmic reticulum protein 1 OS=Mus musculus GN=Serp1 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYP-IGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++S     +   +GP LL  F+FVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Mus musculus (taxid: 10090)

>sp|Q9Y6X1|SERP1_HUMAN Stress-associated endoplasmic reticulum protein 1 OS=Homo sapiens GN=SERP1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYP-IGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++S     +   +GP LL  F+FVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Homo sapiens (taxid: 9606)

>sp|Q3ZBR1|SERP1_BOVIN Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus GN=SERP1 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 12 NARFQKNVTRRGSVPESSAKKGSDYP-IGPILLGFFVFVVLGSSLFQIIRT 61
          N +  KN+T+RG+V ++S     +   +GP LL  F+FVV GS++FQII++
Sbjct: 11 NEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQS 61

Interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. Protects unfolded target proteins against degradation during ER stress. May facilitate glycosylation of target proteins after termination of ER stress. May modulate the use of N-glycosylation sites on target proteins.

Bos taurus (taxid: 9913)

>sp|Q553P6|SERP_DICDI Probable stress-associated endoplasmic reticulum protein OS=Dictyostelium discoideum GN=serp PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          M+ S+ L + K+ ++Q+N+ +RG    S  KK     I P +LGF +FVV+GS+L QI++
Sbjct: 1  MSQSRTLRQ-KSQKYQENIEKRGVA--SPKKKEDGLNINPYVLGFIIFVVVGSTLLQILK 57

May interact with target proteins during translocation into the lumen of the endoplasmic reticulum. May protect unfolded target proteins against degradation and facilitate correct glycosylation.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
218186086	572	hypothetical protein OsI_36788 [Oryza sa	1.0	0.118	0.764	1e-25
359496950	68	PREDICTED: stress-associated endoplasmic	1.0	1.0	0.838	1e-25
242071797	68	hypothetical protein SORBIDRAFT_05g02538	1.0	1.0	0.779	3e-25
224086534	68	predicted protein [Populus trichocarpa]	1.0	1.0	0.808	8e-25
357152094	68	PREDICTED: stress-associated endoplasmic	1.0	1.0	0.764	9e-25
115488784	68	Os12g0514100 [Oryza sativa Japonica Grou	1.0	1.0	0.764	9e-25
242085670	68	hypothetical protein SORBIDRAFT_08g01654	1.0	1.0	0.764	1e-24
326517519	68	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.764	1e-24
226502438	68	LOC100286259 [Zea mays] gi|195635597|gb|	1.0	1.0	0.764	2e-24
297738467	477	unnamed protein product [Vitis vinifera]	1.0	0.142	0.764	3e-24

>gi|218186086|gb|EEC68513.1| hypothetical protein OsI_36788 [Oryza sativa Indica Group]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/68 (76%), Positives = 65/68 (95%)

Query: 1   MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
           MTTS+RLA+RK A+FQKN+T+RGSVPE++ KKG+DYP+GP++LGFF+FVV+GSSLFQIIR
Sbjct: 505 MTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIR 564

Query: 61  TATSRGMA 68
           TATS GMA
Sbjct: 565 TATSGGMA 572

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496950|ref|XP_003635381.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like isoform 1 [Vitis vinifera] gi|359496952|ref|XP_003635382.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like isoform 2 [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 64/68 (94%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTSKRLA+RK A+FQKN+T+RGSVPE+S KKG DYP+GPILLGFFVFVV+GSSLFQIIR
Sbjct: 1  MTTSKRLADRKVAKFQKNITKRGSVPETSTKKGYDYPVGPILLGFFVFVVVGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TATS GMA
Sbjct: 61 TATSGGMA 68

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242071797|ref|XP_002451175.1| hypothetical protein SORBIDRAFT_05g025380 [Sorghum bicolor] gi|241937018|gb|EES10163.1| hypothetical protein SORBIDRAFT_05g025380 [Sorghum bicolor]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 65/68 (95%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTS+RLA+RK A+FQKN+TRRGSVPE++ KKG+DYP+GP++LGFF+FVV+GSSLFQIIR
Sbjct: 1  MTTSRRLADRKTAKFQKNITRRGSVPETTVKKGNDYPVGPVVLGFFIFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TATS GMA
Sbjct: 61 TATSGGMA 68

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086534|ref|XP_002307905.1| predicted protein [Populus trichocarpa] gi|118489449|gb|ABK96527.1| unknown [Populus trichocarpa x Populus deltoides] gi|222853881|gb|EEE91428.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 63/68 (92%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTSKRL+ERK A+F KN+T+RGSVPE+S KKG DYP+GPILLGFFVFVV+GSSLFQIIR
Sbjct: 1  MTTSKRLSERKVAKFHKNITKRGSVPETSTKKGYDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TA+S GMA
Sbjct: 61 TASSGGMA 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357152094|ref|XP_003576008.1| PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Brachypodium distachyon]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 66/68 (97%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTS+RLA++K+A+FQKN+T+RGSVPE++ KKG+DYP+GPI+LGFF+FVV+GSSLFQIIR
Sbjct: 1  MTTSRRLADKKSAKFQKNITKRGSVPETTVKKGNDYPVGPIVLGFFIFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TATS GMA
Sbjct: 61 TATSGGMA 68

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488784|ref|NP_001066879.1| Os12g0514100 [Oryza sativa Japonica Group] gi|113649386|dbj|BAF29898.1| Os12g0514100 [Oryza sativa Japonica Group] gi|125536811|gb|EAY83299.1| hypothetical protein OsI_38508 [Oryza sativa Indica Group] gi|215768129|dbj|BAH00358.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617172|gb|EEE53304.1| hypothetical protein OsJ_36275 [Oryza sativa Japonica Group]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 66/68 (97%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTS+RLA+RK+A+FQKN+T+RGSVPE++ KKG+DYP+GP++LGFF+FVV+GSSLFQIIR
Sbjct: 1  MTTSRRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TATS GMA
Sbjct: 61 TATSGGMA 68

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242085670|ref|XP_002443260.1| hypothetical protein SORBIDRAFT_08g016540 [Sorghum bicolor] gi|241943953|gb|EES17098.1| hypothetical protein SORBIDRAFT_08g016540 [Sorghum bicolor]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 66/68 (97%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTS+RLA+RK+A+FQKN+T+RGSVPE++ KKG+DYP+GPI+LGFF+FVV+GSSLFQIIR
Sbjct: 1  MTTSRRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPIVLGFFIFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TATS G+A
Sbjct: 61 TATSGGLA 68

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326517519|dbj|BAK03678.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 65/68 (95%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTS+RLA+RK A+FQKN+T+RGSVPE++ KKG+DYP+GPI+LGFF+FVV+GSSLFQIIR
Sbjct: 1  MTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPIVLGFFIFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TA+S GMA
Sbjct: 61 TASSGGMA 68

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226502438|ref|NP_001152618.1| LOC100286259 [Zea mays] gi|195635597|gb|ACG37267.1| membrane protein [Zea mays] gi|195658231|gb|ACG48583.1| membrane protein [Zea mays] gi|223949939|gb|ACN29053.1| unknown [Zea mays] gi|414591750|tpg|DAA42321.1| TPA: hypothetical protein ZEAMMB73_764372 [Zea mays]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 65/68 (95%)

Query: 1  MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
          MTTS+RLA+RK A+FQKN+TRRGSVPE++ KKG+DYP+GP++LGFF+FVV+GSSLFQIIR
Sbjct: 1  MTTSRRLADRKTAKFQKNITRRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIR 60

Query: 61 TATSRGMA 68
          TATS G+A
Sbjct: 61 TATSGGVA 68

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738467|emb|CBI27668.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/68 (76%), Positives = 64/68 (94%)

Query: 1   MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIR 60
           MTTS+RLA+RK  +F+KN+T+RGSVPE++ KKGSDYP+GP+LLGFFVFVV+GSSLFQIIR
Sbjct: 410 MTTSRRLADRKVEKFEKNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIR 469

Query: 61  TATSRGMA 68
           TATS G+A
Sbjct: 470 TATSGGVA 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2015969	68	AT1G27330 "AT1G27330" [Arabido	1.0	1.0	0.558	1.1e-14
TAIR|locus:2015984	68	AT1G27350 "AT1G27350" [Arabido	1.0	1.0	0.558	1.1e-14

TAIR|locus:2015969 AT1G27330 "AT1G27330" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/68 (55%), Positives = 45/68 (66%)

Query:     1 MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPIXXXXXXXXXXXXXXXQIIR 60
             MTTSKRLA+RK  +F KN+ +RG VPE++ KKG DYP+GPI               QIIR
Sbjct:     1 MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query:    61 TATSRGMA 68
             TATS GMA
Sbjct:    61 TATSGGMA 68

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2015984 AT1G27350 "AT1G27350" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/68 (55%), Positives = 45/68 (66%)

Query:     1 MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPIXXXXXXXXXXXXXXXQIIR 60
             MTTSKRLA+RK  +F KN+ +RG VPE++ KKG DYP+GPI               QIIR
Sbjct:     1 MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query:    61 TATSRGMA 68
             TATS GMA
Sbjct:    61 TATSGGMA 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.125   0.334    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        53   0.00091  102 3  10 23  0.42    27
                                                     29  0.50    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  443 (47 KB)
  Total size of DFA:  77 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.28u 0.15s 8.43t   Elapsed:  00:00:00
  Total cpu time:  8.28u 0.15s 8.43t   Elapsed:  00:00:00
  Start:  Fri May 10 07:06:06 2013   End:  Fri May 10 07:06:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q553P6	SERP_DICDI	No assigned EC number	0.4	0.8382	0.9661	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
pfam06624	63	pfam06624, RAMP4, Ribosome associated membrane pro	9e-23

>gnl|CDD|219110 pfam06624, RAMP4, Ribosome associated membrane protein RAMP4

 Score = 81.6 bits (202), Expect = 9e-23
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 4  SKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTAT 63
          SK+  +  N +F KN+T+RG+VP+S  KK   YP+GP LLG F+FVV GS++FQII++  
Sbjct: 3  SKQRMKVANEKFSKNITKRGNVPKSLKKKEEKYPVGPWLLGLFIFVVCGSAIFQIIQSIR 62

Query: 64 S 64
           
Sbjct: 63 M 63

This family consists of several ribosome associated membrane protein RAMP4 (or SERP1) sequences. Stabilisation of membrane proteins in response to stress involves the concerted action of a rescue unit in the ER membrane comprised of SERP1/RAMP4, other components of the translocon, and molecular chaperones in the ER. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG3491	65	consensus Predicted membrane protein [Function unk	100.0
PF06624	63	RAMP4: Ribosome associated membrane protein RAMP4;	99.97
PF06724	73	DUF1206: Domain of Unknown Function (DUF1206); Int	89.37
PF10661	145	EssA: WXG100 protein secretion system (Wss), prote	82.72
PHA02513	135	V1 structural protein V1; Reviewed	82.57
PHA00739	92	V3 structural protein VP3	81.35

>KOG3491 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=5.2e-33  Score=167.22  Aligned_cols=65  Identities=57%  Similarity=0.977  Sum_probs=60.1

Q ss_pred             CChHHHHHHHHHHHHhhhhhhcCCCCCccccCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 035282            1 MTTSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTATSRG   66 (68)
Q Consensus         1 mtp~qR~aN~k~~Kf~kni~krGkv~~~~~kk~~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~~~~   66 (68)
                      ||++||. ..+++||+|||.+||+|+++..++++||||+||+||||+||||||++|||||+++.|+
T Consensus         1 m~~Kqr~-~~anekfsKNi~~RGnVakt~~~~e~kypvgPwLlglFvFVVcGSa~FqIIr~~~mG~   65 (65)
T KOG3491|consen    1 MTSKQRA-DRANEKFSKNILKRGNVAKTTTKKEKKYPVGPWLLGLFVFVVCGSALFQIIRTATMGG   65 (65)
T ss_pred             CchHHHH-HHHHHHHhHHHHhcCCccccccCccccCCcchHHHHHHHHHhhcHHHHHHHHHHhccC
Confidence            8888876 3556699999999999999999999999999999999999999999999999999885

>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum

Probab=99.97  E-value=2.1e-32  Score=164.46  Aligned_cols=58  Identities=53%  Similarity=0.946  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhcCCCCCccccCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHH
Q 035282            3 TSKRLAERKNARFQKNVTRRGSVPESSAKKGSDYPIGPILLGFFVFVVLGSSLFQIIRTAT   63 (68)
Q Consensus         3 p~qR~aN~k~~Kf~kni~krGkv~~~~~kk~~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~   63 (68)
                      +.||+||+   ||+||+++||+++++.++++++|||||||||||+||||||+||||||+|+
T Consensus         5 ~~~r~an~---kf~kni~krG~v~~~~k~k~~k~pVgp~~L~l~iFVV~Gs~ifqiir~i~   62 (63)
T PF06624_consen    5 RRMRRANE---KFSKNITKRGKVPKSLKKKEKKYPVGPWLLGLFIFVVCGSAIFQIIRSIQ   62 (63)
T ss_pred             HHHHHHHH---HHHhhHHhcCCCccccccccccCCcCHHHHhhhheeeEcHHHHHHHHHHh
Confidence            34466666   99999999999999988888899999999999999999999999999986

It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].

>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins

Probab=89.37  E-value=0.94  Score=26.54  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=28.0

Q ss_pred             CCCCchHHHHHHHHHHHHhHHHHHHHHHHHh
Q 035282           34 SDYPIGPILLGFFVFVVLGSSLFQIIRTATS   64 (68)
Q Consensus        34 ~k~pV~p~~l~lfiFVV~Gs~ifeiir~~~~   64 (68)
                      ...|.|+|++++....++|-+++++++-+..
T Consensus        41 ~~~p~G~~ll~~vg~gli~~gi~~~~~a~~~   71 (73)
T PF06724_consen   41 LEQPFGRWLLGAVGLGLIGYGIWQFVKAVYR   71 (73)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3799999999999999999999999987653

>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []

Probab=82.72  E-value=2.8  Score=28.37  Aligned_cols=57  Identities=18%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhhhh-hcCCCCCccc-cCCCCCCchHHHHHHHHH--HHHhHHHHHHHHHH
Q 035282            6 RLAERKNARFQKNVT-RRGSVPESSA-KKGSDYPIGPILLGFFVF--VVLGSSLFQIIRTA   62 (68)
Q Consensus         6 R~aN~k~~Kf~kni~-krGkv~~~~~-kk~~k~pV~p~~l~lfiF--VV~Gs~ifeiir~~   62 (68)
                      +.++.|..-|+.+.. +.-.+..+.. ....+.|++|.|+++++.  ++++|+|.=++|-+
T Consensus        83 ~v~~~k~~LFs~~y~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~g~ll~i~~giy~~~r~~  143 (145)
T PF10661_consen   83 TVKETKDSLFSSDYQVKADEVASSPNTENKTKKPISPTILLSIGGILLAICGGIYVVLRKV  143 (145)
T ss_pred             hHHHHHHHhhccccccchhhhhcchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555566665442 2211111111 123578999999887754  44557787777754

This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.

>PHA02513 V1 structural protein V1; Reviewed

Probab=82.57  E-value=1.5  Score=29.80  Aligned_cols=27  Identities=37%  Similarity=0.871  Sum_probs=20.5

Q ss_pred             CCCCchHHHHHHHHHHHHhHHHHHHHHH
Q 035282           34 SDYPIGPILLGFFVFVVLGSSLFQIIRT   61 (68)
Q Consensus        34 ~k~pV~p~~l~lfiFVV~Gs~ifeiir~   61 (68)
                      +...++ .++++|+|+++|-.+|+.|-+
T Consensus        63 e~~n~k-~ii~L~IFIliGivl~~pI~s   89 (135)
T PHA02513         63 EGTNIG-VLLGLFIFILIGIVLLPVITS   89 (135)
T ss_pred             ccccHH-HHHHHHHHHHHHHHHhhHHHH
Confidence            445554 468999999999999995543

>PHA00739 V3 structural protein VP3

Probab=81.35  E-value=1.3  Score=28.54  Aligned_cols=19  Identities=37%  Similarity=0.775  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q 035282           41 ILLGFFVFVVLGSSLFQII   59 (68)
Q Consensus        41 ~~l~lfiFVV~Gs~ifeii   59 (68)
                      -.+++++|.++|-.+|+-|
T Consensus         7 ~iifL~iFi~iGivlf~pI   25 (92)
T PHA00739          7 QIIFLFIFILIGIVLFQPI   25 (92)
T ss_pred             HHHHHHHHHHHHHhhcchh
Confidence            4689999999999999954

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00